RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SWSAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051238

Ensembl transcript IDs: ENSMUST00000053583.7

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCAACCACGGGGCTCTCCTCCAGCTCCCTAGTTTGTTTTTGTCTTTaGGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAACTTGCCACG +
Preference number: 1 (lower is better)
Translates to: PTTGLSSSSLVCFCL*GRVYVALVGLELAT
Trigger: CGTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCCGTGGTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR TCA 90 bp GAGCCAAGAACAGGAGCATACTCGATAGGCCCCGCCCTCAAGAGATaGGGCTGTAGGATCAGGAGTTCAAGGACAGCCTCAGCTAAGGAT +
Preference number: 1 (lower is better)
Translates to: EPRTGAYSIGPALKR*GCRIRSSRTASAKD
Trigger: ATCCTTAGCTGAGGCTGTCCTTGAACTCCTGATCCTACAGCCTCATCTCTTGAGGGCGGGGCCTATCGAGTATGCTCCTGTTCTTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CCA 90 bp CCTAGTTTGTTTTTGTCTTTGAGGCAGGGTCTATGTAGCCCTGGTTaGTCTGGAACTTGCCACGTAGAGCAGGCTGTTCTTAAACACATA +
Preference number: 1 (lower is better)
Translates to: PSLFLSLRQGLCSPG*SGTCHVEQAVLKHI
Trigger: TATGTGTTTAAGAACAGCCTGCTCTACGTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 90 bp CCCAACCACGGGGCTCTCCTCCAGCTCCCTAGTTTGTTTTTGTCTTaGAGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAACTTGCCAC +
Preference number: 2 (lower is better)
Translates to: PNHGALLQLPSLFLS*RQGLCSPGWSGTCH
Trigger: GTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCCGTGGTTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 90 bp GGAGGGCTGTGTGTTTCCACCCAAATGTGGAGGTCAGAAGACAACTaGCAGGAGTCAGTTCTTTCTACCACGAGGGTCCCGGGAATCAGT +
Preference number: 2 (lower is better)
Translates to: GGLCVSTQMWRSEDN*QESVLSTTRVPGIS
Trigger: ACTGATTCCCGGGACCCTCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGGTGGAAACACACAGCCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 90 bp AGGATTCCCAACCACGGGGCTCTCCTCCAGCTCCCTAGTTTGTTTTaGTCTTTGAGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAACT +
Preference number: 2 (lower is better)
Translates to: RIPNHGALLQLPSLF*SLRQGLCSPGWSGT
Trigger: AGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCCGTGGTTGGGAATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR-3UTR CCA 90 bp CATCACACCTGGCCCACTTTGGGTTTTGGAGACAGGGTCCAGTGTGAGCCAGCAAATTTATCATTAGTGTaGAGGGCTGTGTGTTTCCAC +
Preference number: 2 (lower is better)
Translates to: HHTWPTLGFGDRVQCEPANLSLV*RAVCFH
Trigger: GTGGAAACACACAGCCCTCCACACTAATGATAAATT...TGCTGGCTCACACTGGACCCTGTCTCCAAAACCCAAAGTGGGCCAGGTGTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR-3UTR CAA 90 bp CAGATAGAGAACCAAGGCTGTCACAGTGAGAGGATTCCCAACCACGGGGCTCTCGGCCCACTTTGGGTTTaGGAGACAGGGTCCAGTGTG +
Preference number: 3 (lower is better)
Translates to: QIENQGCHSERIPNHGALGPLWV*ETGSSV
Trigger: CACACTGGACCCTGTCTCCAAAACCCAAAGTGGGCC...GAGAGCCCCGTGGTTGGGAATCCTCTCACTGTGACAGCCTTGGTTCTCTATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR-3UTR CAA 90 bp TCTTTGAGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAACTTGCCACGTAGAGCACACCTGGCCCACTTaGGGTTTTGGAGACAGGGTC +
Preference number: 3 (lower is better)
Translates to: SLRQGLCSPGWSGTCHVEHTWPT*GFGDRV
Trigger: GACCCTGTCTCCAAAACCCAAAGTGGGCCAGGTGTG...CTCTACGTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR TCA 72 bp ACAGGAGCATACTCGATAGGCCCCGCCCTCAAGAGATaGGGCTGTAGGATCAGGAGTTCAAGGACAGCCTCA +
Preference number: 3 (lower is better)
Translates to: TGAYSIGPALKR*GCRIRSSRTAS
Trigger: TGAGGCTGTCCTTGAACTCCTGATCCTACAGCCTCATCTCTTGAGGGCGGGGCCTATCGAGTATGCTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR TCA 72 bp ATGACTCAGACAGATAGAGAACCAAGGCTGTCACAGTaGGAGGATTCCCAACCACGGGGCTCTCCTCCAGCT +
Preference number: 3 (lower is better)
Translates to: MTQTDREPRLSQ*EDSQPRGSPPA
Trigger: AGCTGGAGGAGAGCCCCGTGGTTGGGAATCCTCTCACTGTGACAGCCTTGGTTCTCTATCTGTCTGAGTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR TCA 72 bp GGGCTCTCCTCCAGCTCCCTAGTTTGTTTTTGTCTTTaGGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAA +
Preference number: 3 (lower is better)
Translates to: GLSSSSLVCFCL*GRVYVALVGLE
Trigger: TTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR GCA 72 bp AGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAACTTaGCACGTAGAGCAGGCTGTTCTTAAACACATACGT +
Preference number: 3 (lower is better)
Translates to: RQGLCSPGWSGT*HVEQAVLKHIR
Trigger: ACGTATGTGTTTAAGAACAGCCTGCTCTACGTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CCA 72 bp TTTTTGTCTTTGAGGCAGGGTCTATGTAGCCCTGGTTaGTCTGGAACTTGCCACGTAGAGCAGGCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: FLSLRQGLCSPG*SGTCHVEQAVL
Trigger: AAGAACAGCCTGCTCTACGTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR TCA 72 bp GCAGCAGATAAAAAGACCTGCACTAGGAAACATGGCTaGATCTCATTGACAACGGTGAGTGGGCAAAGGAAG +
Preference number: 3 (lower is better)
Translates to: AADKKTCTRKHG*ISLTTVSGQRK
Trigger: CTTCCTTTGCCCACTCACCGTTGTCAATGAGATTCAGCCATGTTTCCTAGTGCAGGTCTTTTTATCTGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR TCA 72 bp AGGAATATGGGTGAGGGTTTTTCACGGGAGTGGAAATaGCTCAGACAGATAGAGAACCAAGGCTGTCACAGT +
Preference number: 3 (lower is better)
Translates to: RNMGEGFSREWK*LRQIENQGCHS
Trigger: ACTGTGACAGCCTTGGTTCTCTATCTGTCTGAGTCATTTCCACTCCCGTGAAAAACCCTCACCCATATTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR GCA 90 bp CAGATAGAGAACCAAGGCTGTCACAGTGAGAGGATTCCCAACCACGGGGCTCTCATCCTCTCCTGGCCTTaGCGCGCAGCCGGCATTCAG +
Preference number: 4 (lower is better)
Translates to: QIENQGCHSERIPNHGALILSWP*RAAGIQ
Trigger: CTGAATGCCGGCTGCGCGGCAAGGCCAGGAGAGGAT...GAGAGCCCCGTGGTTGGGAATCCTCTCACTGTGACAGCCTTGGTTCTCTATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CCA 90 bp AGACAACTTGCAGGAGTCAGTTCTTTCTACCACGAGGGTCCCGGGAATCAGTCAGGTGCTGGGGCCTCATaGGCAGAGGCCAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RQLAGVSSFYHEGPGNQSGAGAS*AEASSW
Trigger: CCAGCTGCTGGCCTCTGCCCATGAGGCCCCAGCACC...TGACTGATTCCCGGGACCCTCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CCA 90 bp CCCAAATGTGGAGGTCAGAAGACAACTTGCAGGAGTCAGTTCTTTCTACCACGAGCCGAGCAACAGCAATaGCGGCCCGGCAGCGCCATC +
Preference number: 4 (lower is better)
Translates to: PKCGGQKTTCRSQFFLPRAEQQQ*RPGSAI
Trigger: GATGGCGCTGCCGGGCCGCCATTGCTGTTGCTCGGC...TCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR GCA 90 bp TCTTTGAGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGAACTTGCCACGTAGAGCCTAGGGCATCTGGCTaGAACCAGCACTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SLRQGLCSPGWSGTCHVEPRASG*NQHCAG
Trigger: TCCTGCACAGTGCTGGTTGCAGCCAGATGCCCTAGG...CTCTACGTGGCAAGTTCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 72 bp GGGGCTCTCCTCCAGCTCCCTAGTTTGTTTTTGTCTTaGAGGCAGGGTCTATGTAGCCCTGGTTGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: GALLQLPSLFLS*RQGLCSPGWSG
Trigger: TCCAGACCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 72 bp AACCACGGGGCTCTCCTCCAGCTCCCTAGTTTGTTTTaGTCTTTGAGGCAGGGTCTATGTAGCCCTGGTTGG +
Preference number: 4 (lower is better)
Translates to: NHGALLQLPSLF*SLRQGLCSPGW
Trigger: CCAACCAGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCCGTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR TCA 90 bp CTATGTGGAGTGGATCCACTCCGAACTGTACACCCTAAATACATGTGCAAGGTCGGGCAAGCCATGGGGTaGCCTTCATCTCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: LCGVDPLRTVHPKYMCKVGQAMG*PSSLHR
Trigger: CCTGTGGAGAGATGAAGGTCACCCCATGGCTTGCCC...GACCTTGCACATGTATTTAGGGTGTACAGTTCGGAGTGGATCCACTCCACATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR GCA 90 bp GGTCAGAAGACAACTTGCAGGAGTCAGTTCTTTCTACCACGAGGGTCCCGGGAATGGGGCATCGGCCTCTaGTTCTTTCTGGGTTTCAAG +
Preference number: 4 (lower is better)
Translates to: GQKTTCRSQFFLPRGSREWGIGL*FFLGFK
Trigger: CTTGAAACCCAGAAAGAAGCAGAGGCCGATGCCCCA...TTCCCGGGACCCTCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 72 bp ATTCCCAACCACGGGGCTCTCCTCCAGCTCCCTAGTTaGTTTTTGTCTTTGAGGCAGGGTCTATGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: IPNHGALLQLPS*FLSLRQGLCSP
Trigger: AGGGCTACATAGACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCCGTGGTTGGGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CCA 90 bp CCCAAATGTGGAGGTCAGAAGACAACTTGCAGGAGTCAGTTCTTTCTACCACGACTGAGCTTAGAAGCCTaGGCAAGCCATGGGGTGACC +
Preference number: 4 (lower is better)
Translates to: PKCGGQKTTCRSQFFLPRLSLEA*ASHGVT
Trigger: GGTCACCCCATGGCTTGCCCAGGCTTCTAAGCTCAG...TCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR TCA 90 bp AGACAACTTGCAGGAGTCAGTTCTTTCTACCACGAGGGTCCCGGGAATCAGTCACTGGCTTCCAGCACTTaGATCTTTCTTCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: RQLAGVSSFYHEGPGNQSLASST*IFLLWA
Trigger: AGCCCAGAGAAGAAAGATTCAAGTGCTGGAAGCCAG...TGACTGATTCCCGGGACCCTCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR TCA 90 bp CAGATAGAGAACCAAGGCTGTCACAGTGAGAGGATTCCCAACCACGGGGCTCTCATCTGCACCTGTCTCTaGAGTAAGTATCCCATCCAA +
Preference number: 4 (lower is better)
Translates to: QIENQGCHSERIPNHGALICTCL*SKYPIQ
Trigger: TTGGATGGGATACTTACTTCAGAGACAGGTGCAGAT...GAGAGCCCCGTGGTTGGGAATCCTCTCACTGTGACAGCCTTGGTTCTCTATCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CCA 90 bp CCACCCAAATGTGGAGGTCAGAAGACAACTTGCAGGAGTCAGTTCTTTCTACCACGGCTTCCTGGGCACTaGGATCCTCTGCGAGATATT +
Preference number: 4 (lower is better)
Translates to: PPKCGGQKTTCRSQFFLPRLPGH*DPLRDI
Trigger: AATATCTCGCAGAGGATCCCAGTGCCCAGGAAGCCG...TGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
3UTR CAA 72 bp TGTGTTTCCACCCAAATGTGGAGGTCAGAAGACAACTaGCAGGAGTCAGTTCTTTCTACCACGAGGGTCCCG +
Preference number: 4 (lower is better)
Translates to: CVSTQMWRSEDN*QESVLSTTRVP
Trigger: CGGGACCCTCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGGTGGAAACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR TCA 90 bp CCCAAATGTGGAGGTCAGAAGACAACTTGCAGGAGTCAGTTCTTTCTACCACGAAGCTGGAGAAGCTCTTaGATTGAGGATGGGTACTGG +
Preference number: 4 (lower is better)
Translates to: PKCGGQKTTCRSQFFLPRSWRSS*IEDGYW
Trigger: CCAGTACCCATCCTCAATTCAAGAGCTTCTCCAGCT...TCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CCA 90 bp CCCAAATGTGGAGGTCAGAAGACAACTTGCAGGAGTCAGTTCTTTCTACCACGATTGGCTCCAAGACGGTaGCTAAAGAAGGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: PKCGGQKTTCRSQFFLPRLAPRR*LKKAAV
Trigger: TACTGCTGCCTTCTTTAGCCACCGTCTTGGAGCCAA...TCGTGGTAGAAAGAACTGACTCCTGCAAGTTGTCTTCTGACCTCCACATTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR GCA 90 bp CTATGTGGAGTGGATCCACTCCGAACTGTACACCCTAAATACATGTGCAAGGTCCTGCAACCAGCACTGTaGAGGAAAATATCGCTTAAG +
Preference number: 4 (lower is better)
Translates to: LCGVDPLRTVHPKYMCKVLQPAL*RKISLK
Trigger: CTTAAGCGATATTTTCCTGCACAGTGCTGGTTGCAG...GACCTTGCACATGTATTTAGGGTGTACAGTTCGGAGTGGATCCACTCCACATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 90 bp CAGCAGCGACGTCTGCGCAGAGCGCGGAGCGCCGAGCAACAGCAATaGCGGCCCGGCAGCGCCATCCTCTCCTGGCCTTGCCGCGCAGCC +
Preference number: 5 (lower is better)
Translates to: QQRRLRRARSAEQQQ*RPGSAILSWPCRAA
Trigger: GGCTGCGCGGCAAGGCCAGGAGAGGATGGCGCTGCCGGGCCGCCATTGCTGTTGCTCGGCGCTCCGCGCTCTGCGCAGACGTCGCTGCTG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 90 bp AGCGCCGAGCAACAGCAATGGCGGCCCGGCAGCGCCATCCTCTCCTaGCCTTGCCGCGCAGCCGGCATTCAGCACCCGCCTCAGCGCCTC +
Preference number: 5 (lower is better)
Translates to: SAEQQQWRPGSAILS*PCRAAGIQHPPQRL
Trigger: GAGGCGCTGAGGCGGGTGCTGAATGCCGGCTGCGCGGCAAGGCCAGGAGAGGATGGCGCTGCCGGGCCGCCATTGCTGTTGCTCGGCGCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS GCA 90 bp GAGCAACAGCAATGGCGGCCCGGCAGCGCCATCCTCTCCTGGCCTTaGCGCGCAGCCGGCATTCAGCACCCGCCTCAGCGCCTCCGCCAT +
Preference number: 5 (lower is better)
Translates to: EQQQWRPGSAILSWP*RAAGIQHPPQRLRH
Trigger: ATGGCGGAGGCGCTGAGGCGGGTGCTGAATGCCGGCTGCGCGGCAAGGCCAGGAGAGGATGGCGCTGCCGGGCCGCCATTGCTGTTGCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS GCA 90 bp CTAGGGCTCAGTTTGCCCAACTCTAGGCTGGCTCGAAGGCAGCAATaGTGTCCCAAGCCTAGGGCATCTGGCTGCAACCAGCACTGTGCA +
Preference number: 5 (lower is better)
Translates to: LGLSLPNSRLARRQQ*CPKPRASGCNQHCA
Trigger: TGCACAGTGCTGGTTGCAGCCAGATGCCCTAGGCTTGGGACAGCATTGCTGCCTTCGAGCCAGCCTAGAGTTGGGCAAACTGAGCCCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CAA 90 bp CATCACACCTGGCCCACTTTGGGTTTTGGAGACAGGGTCCAGTGTGAGCCAGCAGTCCTAGGGCTCAGTTaGCCCAACTCTAGGCTGGCT +
Preference number: 5 (lower is better)
Translates to: HHTWPTLGFGDRVQCEPAVLGLS*PNSRLA
Trigger: AGCCAGCCTAGAGTTGGGCAAACTGAGCCCTAGGAC...TGCTGGCTCACACTGGACCCTGTCTCCAAAACCCAAAGTGGGCCAGGTGTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 90 bp CAGTATCCAGAAGCAATGCAGCCAAGTAGGCGGCTTCCTGGGCACTaGGATCCTCTGCGAGATATTCTTCCAGGCCGTCCAGGAGTAGAA +
Preference number: 5 (lower is better)
Translates to: QYPEAMQPSRRLPGH*DPLRDILPGRPGVE
Trigger: TTCTACTCCTGGACGGCCTGGAAGAATATCTCGCAGAGGATCCCAGTGCCCAGGAAGCCGCCTACTTGGCTGCATTGCTTCTGGATACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS GCA 90 bp CTGGCTCGAAGGCAGCAATGCTGTCCCAAGCCTAGGGCATCTGGCTaGAACCAGCACTGTGCAGGAAAATATCGCTTAAGTAATGGCAGA +
Preference number: 5 (lower is better)
Translates to: LARRQQCCPKPRASG*NQHCAGKYRLSNGR
Trigger: TCTGCCATTACTTAAGCGATATTTTCCTGCACAGTGCTGGTTGCAGCCAGATGCCCTAGGCTTGGGACAGCATTGCTGCCTTCGAGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CAA 90 bp CTATGTGGAGTGGATCCACTCCGAACTGTACACCCTAAATACATGTGCAAGGTCAGCCCACAACTGCCATaGGCTCCAAGACGGTGGCTA +
Preference number: 5 (lower is better)
Translates to: LCGVDPLRTVHPKYMCKVSPQLP*APRRWL
Trigger: TAGCCACCGTCTTGGAGCCAATGGCAGTTGTGGGCT...GACCTTGCACATGTATTTAGGGTGTACAGTTCGGAGTGGATCCACTCCACATAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CAA 90 bp AACCACGGGGCTCTCCTCCAGCTCCCTAGTTTGTTTTTGTCTTTGAGGCAGGGTACTGGCTTCCAGCACTaGAATCTTTCTTCTCTGGGC +
Preference number: 5 (lower is better)
Translates to: NHGALLQLPSLFLSLRQGTGFQH*NLSSLG
Trigger: GCCCAGAGAAGAAAGATTCAAGTGCTGGAAGCCAGT...ACCCTGCCTCAAAGACAAAAACAAACTAGGGAGCTGGAGGAGAGCCCCGTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 90 bp CTTCCAGCACTTGAATCTTTCTTCTCTGGGCTGAGCTTAGAAGCCTaGGCAAGCCATGGGGTGACCTTCATCTCTCCACAGGGTAAGAAA +
Preference number: 5 (lower is better)
Translates to: LPALESFFSGLSLEA*ASHGVTFISPQGKK
Trigger: TTTCTTACCCTGTGGAGAGATGAAGGTCACCCCATGGCTTGCCCAGGCTTCTAAGCTCAGCCCAGAGAAGAAAGATTCAAGTGCTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 90 bp GGAGACCCAGGACCAGGGAGGTTGTCACATCCCAAAGTTAAGGACTaGCTTCCAGCACTTGAATCTTTCTTCTCTGGGCTGAGCTTAGAA +
Preference number: 5 (lower is better)
Translates to: GDPGPGRLSHPKVKD*LPALESFFSGLSLE
Trigger: TTCTAAGCTCAGCCCAGAGAAGAAAGATTCAAGTGCTGGAAGCCAGTCCTTAACTTTGGGATGTGACAACCTCCCTGGTCCTGGGTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS-3UTR CAA 90 bp TGGGATACGGGCACCCAAGGAATGTGCAAGAGGAGCCAAGAACAGGAGCATACTGGAGAAGCTCTTGAATaGAGGATGGGTACTGGAAAC +
Preference number: 5 (lower is better)
Translates to: WDTGTQGMCKRSQEQEHTGEALE*RMGTGN
Trigger: GTTTCCAGTACCCATCCTCAATTCAAGAGCTTCTCC...AGTATGCTCCTGTTCTTGGCTCCTCTTGCACATTCCTTGGGTGCCCGTATCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS GCA 72 bp GGACCCGCGGCCTTCCCCTGCCGCCTCAAGGGCGGCTaGAAACAGCAGCGACGTCTGCGCAGAGCGCGGAGC +
Preference number: 6 (lower is better)
Translates to: GPAAFPCRLKGG*KQQRRLRRARS
Trigger: GCTCCGCGCTCTGCGCAGACGTCGCTGCTGTTTGCAGCCGCCCTTGAGGCGGCAGGGGAAGGCCGCGGGTCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CAA 90 bp CGAGCAACAGCAATGGCGGCCCGGCAGCGCCATCCTCTCCTGGCCTaGCCGCGCAGCCGGCATTCAGCACCCGCCTCAGCGCCTCCGCCA +
Preference number: 6 (lower is better)
Translates to: RATAMAARQRHPLLA*PRSRHSAPASAPPP
Trigger: TGGCGGAGGCGCTGAGGCGGGTGCTGAATGCCGGCTGCGCGGCAAGGCCAGGAGAGGATGGCGCTGCCGGGCCGCCATTGCTGTTGCTCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 72 bp CGTCTGCGCAGAGCGCGGAGCGCCGAGCAACAGCAATaGCGGCCCGGCAGCGCCATCCTCTCCTGGCCTTGC +
Preference number: 6 (lower is better)
Translates to: RLRRARSAEQQQ*RPGSAILSWPC
Trigger: GCAAGGCCAGGAGAGGATGGCGCTGCCGGGCCGCCATTGCTGTTGCTCGGCGCTCCGCGCTCTGCGCAGACG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS GCA 72 bp GCCGCCTCAAGGGCGGCTGCAAACAGCAGCGACGTCTaGGCAGAGCGCGGAGCGCCGAGCAACAGCAATGGC +
Preference number: 6 (lower is better)
Translates to: AASRAAANSSDV*AERGAPSNSNG
Trigger: GCCATTGCTGTTGCTCGGCGCTCCGCGCTCTGCGCAGACGTCGCTGCTGTTTGCAGCCGCCCTTGAGGCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 72 bp GAAGCAATGCAGCCAAGTAGGCGGCTTCCTGGGCACTaGGATCCTCTGCGAGATATTCTTCCAGGCCGTCCA +
Preference number: 6 (lower is better)
Translates to: EAMQPSRRLPGH*DPLRDILPGRP
Trigger: TGGACGGCCTGGAAGAATATCTCGCAGAGGATCCCAGTGCCCAGGAAGCCGCCTACTTGGCTGCATTGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS TCA 72 bp ATGGGCAGAGGCCAGCAGCTGGAGAAGCTCTTGAATTaGGGATGGGTACTGGAAACGAACCTTCTGGAGCCG +
Preference number: 6 (lower is better)
Translates to: MGRGQQLEKLLN*GWVLETNLLEP
Trigger: CGGCTCCAGAAGGTTCGTTTCCAGTACCCATCCTCAATTCAAGAGCTTCTCCAGCTGCTGGCCTCTGCCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CAA 72 bp CATGGGCAGAGGCCAGCAGCTGGAGAAGCTCTTGAATaGAGGATGGGTACTGGAAACGAACCTTCTGGAGCC +
Preference number: 6 (lower is better)
Translates to: HGQRPAAGEALE*RMGTGNEPSGA
Trigger: GGCTCCAGAAGGTTCGTTTCCAGTACCCATCCTCAATTCAAGAGCTTCTCCAGCTGCTGGCCTCTGCCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CAA 72 bp AAGAAACTCACTGACCACTCTGTCCTAGGGCTCAGTTaGCCCAACTCTAGGCTGGCTCGAAGGCAGCAATGC +
Preference number: 6 (lower is better)
Translates to: KKLTDHSVLGLS*PNSRLARRQQC
Trigger: GCATTGCTGCCTTCGAGCCAGCCTAGAGTTGGGCAAACTGAGCCCTAGGACAGAGTGGTCAGTGAGTTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CAA 72 bp AGTATCCCATCCAAGGGAGACCCAGGACCAGGGAGGTaGTCACATCCCAAAGTTAAGGACTGGCTTCCAGCA +
Preference number: 6 (lower is better)
Translates to: SIPSKGDPGPGR*SHPKVKDWLPA
Trigger: TGCTGGAAGCCAGTCCTTAACTTTGGGATGTGACAACCTCCCTGGTCCTGGGTCTCCCTTGGATGGGATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS GCA 72 bp AGGCAGCAATGCTGTCCCAAGCCTAGGGCATCTGGCTaGAACCAGCACTGTGCAGGAAAATATCGCTTAAGT +
Preference number: 6 (lower is better)
Translates to: RQQCCPKPRASG*NQHCAGKYRLS
Trigger: ACTTAAGCGATATTTTCCTGCACAGTGCTGGTTGCAGCCAGATGCCCTAGGCTTGGGACAGCATTGCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 72 bp ACAACAAGCCCACAACTGCCATTGGCTCCAAGACGGTaGCTAAAGAAGGCAGCAGTATCCAGAAGCAATGCA +
Preference number: 6 (lower is better)
Translates to: TTSPQLPLAPRR*LKKAAVSRSNA
Trigger: TGCATTGCTTCTGGATACTGCTGCCTTCTTTAGCCACCGTCTTGGAGCCAATGGCAGTTGTGGGCTTGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CCA 72 bp GGACCAGGGAGGTTGTCACATCCCAAAGTTAAGGACTaGCTTCCAGCACTTGAATCTTTCTTCTCTGGGCTG +
Preference number: 6 (lower is better)
Translates to: GPGRLSHPKVKD*LPALESFFSGL
Trigger: CAGCCCAGAGAAGAAAGATTCAAGTGCTGGAAGCCAGTCCTTAACTTTGGGATGTGACAACCTCCCTGGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7
CDS CAA 90 bp TCTGAAGTAAGTATCCCATCCAAGGGAGACCCAGGACCAGGGAGGTaGTCACATCCCAAAGTTAAGGACTGGCTTCCAGCACTTGAATCT +
Preference number: 6 (lower is better)
Translates to: SEVSIPSKGDPGPGR*SHPKVKDWLPALES
Trigger: AGATTCAAGTGCTGGAAGCCAGTCCTTAACTTTGGGATGTGACAACCTCCCTGGTCCTGGGTCTCCCTTGGATGGGATACTTACTTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053583.7