Pregenerated sensors for SWI5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044627Ensembl transcript IDs: ENSMUST00000050410.11, ENSMUST00000113395.8, ENSMUST00000113397.9, ENSMUST00000113400.3, ENSMUST00000140406.8, ENSMUST00000183946.8
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCCATCCTCCTGTCCCTGTGGGCTGTAGATGAAAATCTCCAAGAAGCTGCTCAGATCCTCCTGTCCCTGTaGGCTGTAGATGAAAATCTC | + |
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Preference number: 2 (lower is better) Translates to: PILLSLWAVDENLQEAAQILLSL*AVDENL Trigger: GAGATTTTCATCTACAGCCCACAGGGACAGGAGGAT...CTGAGCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGGGACAGGAGGATGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113397.9 ENSMUST00000140406.8 |
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| 3UTR-3UTR TCA 90 bp | CTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCACCCCTGTGGGCTGTAGATaGAAATCTCCAAGAAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: LNIDNTHPSQYSSSLEPTPVGCR*KSPRSC Trigger: GCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGG...GGTGGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR TCA 90 bp | AACCTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCCCTGTGGGCTGTAGATaGAAATCTCCAAGAAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: NLNIDNTHPSQYSSSLEPPVGCR*KSPRSC Trigger: GCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGG...GGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR TCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCCCTGTGGGCTGTAGATaGAAATCTCCAAGAAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: NHMNILSRLCLLCPHPPVPVGCR*KSPRSC Trigger: GCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGG...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR CCA 90 bp | CTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCACCATCCTCCTGTCCCTGTaGGCTGTAGATGAAAATCTC | + |
|
Preference number: 2 (lower is better) Translates to: LNIDNTHPSQYSSSLEPTILLSL*AVDENL Trigger: GAGATTTTCATCTACAGCCCACAGGGACAGGAGGAT...GGTGGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR GCA 90 bp | CTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCACCATACTGTCTAGACTCTaGCTTTTATGCCCCCATCCT | + |
|
Preference number: 2 (lower is better) Translates to: LNIDNTHPSQYSSSLEPTILSRL*LLCPHP Trigger: AGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTAT...GGTGGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR GCA 90 bp | AACCTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCATACTGTCTAGACTCTaGCTTTTATGCCCCCATCCT | + |
|
Preference number: 2 (lower is better) Translates to: NLNIDNTHPSQYSSSLEPILSRL*LLCPHP Trigger: AGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTAT...GGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR TCA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTACCTGTGGGCTGTAGATaGAAATCTCCAAGAAGCTGC | + |
|
Preference number: 2 (lower is better) Translates to: LLICLLTKGTTTHTYSQVPVGCR*KSPRSC Trigger: GCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGG...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR TCA 90 bp | AAGAAGCTGCTCAGTCATTCAGGTTTAGATCAAAATCTGGATATAACTCCTTGGCCTGTGGGCTGTAGATaGAAATCTCCAAGAAGCTGC | + |
|
Preference number: 2 (lower is better) Translates to: KKLLSHSGLDQNLDITPWPVGCR*KSPRSC Trigger: GCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGG...CCAAGGAGTTATATCCAGATTTTGATCTAAACCTGAATGACTGAGCAGCTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113397.9 ENSMUST00000140406.8 |
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| 3UTR-3UTR GCA 90 bp | CAGTCATTCAGGTTTAGATCAAAATCTGGATATAACTCCTTGGTGGTAACGCCTATACTGTCTAGACTCTaGCTTTTATGCCCCCATCCT | + |
|
Preference number: 2 (lower is better) Translates to: QSFRFRSKSGYNSLVVTPILSRL*LLCPHP Trigger: AGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTAT...AGGCGTTACCACCAAGGAGTTATATCCAGATTTTGATCTAAACCTGAATGACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000113397.9 ENSMUST00000140406.8 |
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| 3UTR-3UTR TCA 90 bp | TCATTCAGGTTTAGATCAAAATCTGGATATAACTCCTTGGTGGTAACGCCTCGATCTGTGATACATCCTTaGTGTCATTGTACTCATGGA | + |
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Preference number: 2 (lower is better) Translates to: SFRFRSKSGYNSLVVTPRSVIHP*CHCTHG Trigger: TCCATGAGTACAATGACATCAAGGATGTATCACAGA...TCGAGGCGTTACCACCAAGGAGTTATATCCAGATTTTGATCTAAACCTGAATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| 3UTR-3UTR TCA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTCCCCAGCAGCATCTGTaGTACATCCTTGATGTCATT | + |
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Preference number: 2 (lower is better) Translates to: HMFINKRDNHTHLLTSMFPQQHL*YILDVI Trigger: AATGACATCAAGGATGTATCACAGATGCTGCTGGGG...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| 3UTR-3UTR CCA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTATCCTCCTGTCCCTGTaGGCTGTAGATGAAAATCTC | + |
|
Preference number: 2 (lower is better) Translates to: HMFINKRDNHTHLLTSMFILLSL*AVDENL Trigger: GAGATTTTCATCTACAGCCCACAGGGACAGGAGGAT...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR-3UTR CCA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTATGTCATTGTACTCATaGAGGAGGGAGATATGCTTC | + |
|
Preference number: 2 (lower is better) Translates to: HMFINKRDNHTHLLTSMFMSLYS*RREICF Trigger: GAAGCATATCTCCCTCCTCCATGAGTACAATGACAT...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| 3UTR TCA 72 bp | CAGCCAGCTTCCCCAGCAGCATCTGTGATACATCCTTaGTGTCATTGTACTCATGGAGGAGGGAGATATGCT | + |
|
Preference number: 3 (lower is better) Translates to: QPASPAASVIHP*CHCTHGGGRYA Trigger: AGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| 3UTR-3UTR CAA 90 bp | CTCCTGTCCCTGTGGGCTGTAGATGAAAATCTCCAAGAAGCTGCTCAGTCATTCACATCCTTGATGTCATaGTACTCATGGAGGAGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: LLSLWAVDENLQEAAQSFTSLMS*YSWRRE Trigger: CTCCCTCCTCCATGAGTACAATGACATCAAGGATGT...GAATGACTGAGCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGGGACAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| 3UTR-3UTR CAA 90 bp | CCCATCCTCCTGTCCCTGTGGGCTGTAGATGAAAATCTCCAAGAAGCTGCTCAGATCTGTGATACATCCTaGATGTCATTGTACTCATGG | + |
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Preference number: 3 (lower is better) Translates to: PILLSLWAVDENLQEAAQICDTS*MSLYSW Trigger: CCATGAGTACAATGACATCAAGGATGTATCACAGAT...CTGAGCAGCTTCTTGGAGATTTTCATCTACAGCCCACAGGGACAGGAGGATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| 3UTR-3UTR CAA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATTAGGAACCTTAACATaGACAATACCCACCCCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: LLICLLTKGTTTHTYSQVLGTLT*TIPTPP Trigger: GGGAGGGGTGGGTATTGTCAATGTTAAGGTTCCTAA...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR TCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCCTGACTCACCCCTCCTaGACCCTAAGGTCCGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: NHMNILSRLCLLCPHPPVLTHPS*TLRSGA Trigger: TGCCCCGGACCTTAGGGTTCAGGAGGGGTGAGTCAG...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000050410.11 ENSMUST00000113397.9 ENSMUST00000140406.8 |
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| CDS-3UTR TCA 90 bp | TCATTCAGGTTTAGATCAAAATCTGGATATAACTCCTTGGTGGTAACGCCTCGACTGACTCACCCCTCCTaGACCCTAAGGTCCGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SFRFRSKSGYNSLVVTPRLTHPS*TLRSGA Trigger: TGCCCCGGACCTTAGGGTTCAGGAGGGGTGAGTCAG...TCGAGGCGTTACCACCAAGGAGTTATATCCAGATTTTGATCTAAACCTGAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113397.9 ENSMUST00000140406.8 |
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| 3UTR CAA 72 bp | ACAGCCAGCTTCCCCAGCAGCATCTGTGATACATCCTaGATGTCATTGTACTCATGGAGGAGGGAGATATGC | + |
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Preference number: 4 (lower is better) Translates to: TASFPSSICDTS*MSLYSWRREIC Trigger: GCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| CDS-3UTR TCA 90 bp | AAGAAGCTGCTCAGTCATTCAGGTTTAGATCAAAATCTGGATATAACTCCTTGGCTGACTCACCCCTCCTaGACCCTAAGGTCCGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: KKLLSHSGLDQNLDITPWLTHPS*TLRSGA Trigger: TGCCCCGGACCTTAGGGTTCAGGAGGGGTGAGTCAG...CCAAGGAGTTATATCCAGATTTTGATCTAAACCTGAATGACTGAGCAGCTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113397.9 ENSMUST00000140406.8 |
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| 3UTR CAA 72 bp | TTCCCCAGCAGCATCTGTGATACATCCTTGATGTCATaGTACTCATGGAGGAGGGAGATATGCTTCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FPSSICDTSLMS*YSWRREICFSS Trigger: GCTGGAGAAGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113397.9 |
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| CDS-3UTR TCA 90 bp | CTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCACCCCCCAGCAGCATCTGTaGTACATCCTTGATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: LNIDNTHPSQYSSSLEPTPQQHL*YILDVI Trigger: AATGACATCAAGGATGTATCACAGATGCTGCTGGGG...GGTGGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAG 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR TCA 90 bp | CACAGGCATCTGCCTGGGCTCAAGACTCTGGATTTAGTTGGAGGAGGAAATAAATGTCTCTGCAGGCCATaGAGAACAGGAACCATTACT | + |
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Preference number: 4 (lower is better) Translates to: HRHLPGLKTLDLVGGGNKCLCRP*RTGTIT Trigger: AGTAATGGTTCCTGTTCTTCATGGCCTGCAGAGACA...TTTATTTCCTCCTCCAACTAAATCCAGAGTCTTGAGCCCAGGCAGATGCCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCCCCTCTGCTATTAACTaGGAGATCTCCTTGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: NHMNILSRLCLLCPHPPVPSAIN*EISLSS Trigger: GCTGGACAAGGAGATCTCCCAGTTAATAGCAGAGGG...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR TCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCCCCCAGCAGCATCTGTaGTACATCCTTGATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: NHMNILSRLCLLCPHPPVPQQHL*YILDVI Trigger: AATGACATCAAGGATGTATCACAGATGCTGCTGGGG...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR TCA 90 bp | AACCTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCCCCCAGCAGCATCTGTaGTACATCCTTGATGTCATT | + |
|
Preference number: 4 (lower is better) Translates to: NLNIDNTHPSQYSSSLEPPQQHL*YILDVI Trigger: AATGACATCAAGGATGTATCACAGATGCTGCTGGGG...GGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAGGTT 47% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR GCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCTGGAGGAGGGAGATATaGTTCTCCAGCTCAATCACA | + |
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Preference number: 4 (lower is better) Translates to: NHMNILSRLCLLCPHPPVWRREI*FSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCA...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR GCA 90 bp | AGTCACAGCCCAACTGGCCTGACTTCCATGACAACTGTTCTAGTCAGACAAATATGGAGGAGGGAGATATaGTTCTCCAGCTCAATCACA | + |
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Preference number: 4 (lower is better) Translates to: SHSPTGLTSMTTVLVRQIWRREI*FSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCA...TATTTGTCTGACTAGAACAGTTGTCATGGAAGTCAGGCCAGTTGGGCTGTGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CCA 90 bp | GAAATAAATCCCACTGCATATTATAAAGAGCTGCCTTGGTCCTTGCTGCCACTGCCCTCTGCTATTAACTaGGAGATCTCCTTGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: EINPTAYYKELPWSLLPLPSAIN*EISLSS Trigger: GCTGGACAAGGAGATCTCCCAGTTAATAGCAGAGGG...CAGTGGCAGCAAGGACCAAGGCAGCTCTTTATAATATGCAGTGGGATTTATTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR TCA 90 bp | GAAATAAATCCCACTGCATATTATAAAGAGCTGCCTTGGTCCTTGCTGCCACTGCCCCAGCAGCATCTGTaGTACATCCTTGATGTCATT | + |
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Preference number: 4 (lower is better) Translates to: EINPTAYYKELPWSLLPLPQQHL*YILDVI Trigger: AATGACATCAAGGATGTATCACAGATGCTGCTGGGG...CAGTGGCAGCAAGGACCAAGGCAGCTCTTTATAATATGCAGTGGGATTTATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR GCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCCAGGTTGGTAAGTCCTaGTCAAAATCGTTCCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: NHMNILSRLCLLCPHPPVQVGKS*SKSFPS Trigger: ACTTGGGAACGATTTTGAGCAGGACTTACCAACCTG...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR TCA 90 bp | CTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCACCTCTGTGATACATCCTTaGTGTCATTGTACTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: LNIDNTHPSQYSSSLEPTSVIHP*CHCTHG Trigger: TCCATGAGTACAATGACATCAAGGATGTATCACAGA...GGTGGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR TCA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTAGTAGGACCTGTGCTTaGGATCCCAGCTTCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: HMFINKRDNHTHLLTSMFSRTCA*DPSFPS Trigger: GCTGGGGAAGCTGGGATCTCAAGCACAGGTCCTACT...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CCA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCATGTCATTGTACTCATaGAGGAGGGAGATATGCTTC | + |
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Preference number: 4 (lower is better) Translates to: NHMNILSRLCLLCPHPPVMSLYS*RREICF Trigger: GAAGCATATCTCCCTCCTCCATGAGTACAATGACAT...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| 3UTR CAA 72 bp | CACACCTACTCACAAGTATGTTTAGGAACCTTAACATaGACAATACCCACCCCTCCCAATACTCCTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: HTYSQVCLGTLT*TIPTPPNTPLL Trigger: GAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAGGTTCCTAAACATACTTGTGAGTAGGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113397.9 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR GCA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGGAGGAGGGAGATATaGTTCTCCAGCTCAATCACA | + |
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Preference number: 4 (lower is better) Translates to: LLICLLTKGTTTHTYSQVWRREI*FSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCA...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CCA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTCCCTCTGCTATTAACTaGGAGATCTCCTTGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: HMFINKRDNHTHLLTSMFPSAIN*EISLSS Trigger: GCTGGACAAGGAGATCTCCCAGTTAATAGCAGAGGG...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR GCA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTTGGAGGAGGGAGATATaGTTCTCCAGCTCAATCACA | + |
|
Preference number: 4 (lower is better) Translates to: HMFINKRDNHTHLLTSMFWRREI*FSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCA...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CCA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTAATGTCATTGTACTCATaGAGGAGGGAGATATGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LLICLLTKGTTTHTYSQVMSLYS*RREICF Trigger: GAAGCATATCTCCCTCCTCCATGAGTACAATGACAT...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR TCA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATCTGTGATACATCCTTaGTGTCATTGTACTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: LLICLLTKGTTTHTYSQVSVIHP*CHCTHG Trigger: TCCATGAGTACAATGACATCAAGGATGTATCACAGA...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS TCA 90 bp | GTGCTTGAGATCCCAGCTTCCCCAGCAGCATCTGTGATACATCCTTaGTGTCATTGTACTCATGGAGGAGGGAGATATGCTTCTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: VLEIPASPAASVIHP*CHCTHGGGRYASPA Trigger: AGCTGGAGAAGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGGATCTCAAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS TCA 90 bp | GTTGGTAAGTCCTGCTCAAAATCGTTCCCAAGTAGGACCTGTGCTTaGGATCCCAGCTTCCCCAGCAGCATCTGTGATACATCCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: VGKSCSKSFPSRTCA*DPSFPSSICDTSLM Trigger: CATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGGATCTCAAGCACAGGTCCTACTTGGGAACGATTTTGAGCAGGACTTACCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CAA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCAACTGGGAGATCTCCTaGTCCAGCATGTCATGCTTC | + |
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Preference number: 5 (lower is better) Translates to: NHMNILSRLCLLCPHPPVNWEIS*SSMSCF Trigger: GAAGCATGACATGCTGGACAAGGAGATCTCCCAGTT...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CAA 90 bp | AACCTTAACATTGACAATACCCACCCCTCCCAATACTCCTCTTCTCTAGAACCCACATCCTTGATGTCATaGTACTCATGGAGGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: NLNIDNTHPSQYSSSLEPTSLMS*YSWRRE Trigger: CTCCCTCCTCCATGAGTACAATGACATCAAGGATGT...GGGTTCTAGAGAAGAGGAGTATTGGGAGGGGTGGGTATTGTCAATGTTAAGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CAA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCACATCCTTGATGTCATaGTACTCATGGAGGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: NHMNILSRLCLLCPHPPVTSLMS*YSWRRE Trigger: CTCCCTCCTCCATGAGTACAATGACATCAAGGATGT...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CAA 90 bp | CAAGAAGCTGCTCAGTCATTCAGGTTTAGATCAAAATCTGGATATAACTCCTTGAACTGGGAGATCTCCTaGTCCAGCATGTCATGCTTC | + |
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Preference number: 5 (lower is better) Translates to: QEAAQSFRFRSKSGYNSLNWEIS*SSMSCF Trigger: GAAGCATGACATGCTGGACAAGGAGATCTCCCAGTT...CAAGGAGTTATATCCAGATTTTGATCTAAACCTGAATGACTGAGCAGCTTCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CAA 90 bp | AACCATATGAACATACTGTCTAGACTCTGCCTTTTATGCCCCCATCCTCCTGTCATCTGTGATACATCCTaGATGTCATTGTACTCATGG | + |
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Preference number: 5 (lower is better) Translates to: NHMNILSRLCLLCPHPPVICDTS*MSLYSW Trigger: CCATGAGTACAATGACATCAAGGATGTATCACAGAT...GACAGGAGGATGGGGGCATAAAAGGCAGAGTCTAGACAGTATGTTCATATGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CAA 90 bp | AGTCACAGCCCAACTGGCCTGACTTCCATGACAACTGTTCTAGTCAGACAAATAATCTGTGATACATCCTaGATGTCATTGTACTCATGG | + |
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Preference number: 5 (lower is better) Translates to: SHSPTGLTSMTTVLVRQIICDTS*MSLYSW Trigger: CCATGAGTACAATGACATCAAGGATGTATCACAGAT...TATTTGTCTGACTAGAACAGTTGTCATGGAAGTCAGGCCAGTTGGGCTGTGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CAA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTAACATCCTTGATGTCATaGTACTCATGGAGGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: LLICLLTKGTTTHTYSQVTSLMS*YSWRRE Trigger: CTCCCTCCTCCATGAGTACAATGACATCAAGGATGT...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CAA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTCTGCAATCTCGCAGGTaGGTAAGTCCTGCTCAAAAT | + |
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Preference number: 5 (lower is better) Translates to: HMFINKRDNHTHLLTSMFLQSRR*VSPAQN Trigger: ATTTTGAGCAGGACTTACCAACCTGCGAGATTGCAG...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS-3UTR CAA 90 bp | CTGCTCATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTAATCTGTGATACATCCTaGATGTCATTGTACTCATGG | + |
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Preference number: 5 (lower is better) Translates to: LLICLLTKGTTTHTYSQVICDTS*MSLYSW Trigger: CCATGAGTACAATGACATCAAGGATGTATCACAGAT...TACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATGAGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS-3UTR CAA 90 bp | CATATGTTTATTAACAAAAGGGACAACCACACACACCTACTCACAAGTATGTTTATCTGTGATACATCCTaGATGTCATTGTACTCATGG | + |
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Preference number: 5 (lower is better) Translates to: HMFINKRDNHTHLLTSMFICDTS*MSLYSW Trigger: CCATGAGTACAATGACATCAAGGATGTATCACAGAT...AAACATACTTGTGAGTAGGTGTGTGTGGTTGTCCCTTTTGTTAATAAACATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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| CDS TCA 72 bp | TCCTGCTCAAAATCGTTCCCAAGTAGGACCTGTGCTTaGGATCCCAGCTTCCCCAGCAGCATCTGTGATACA | + |
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Preference number: 6 (lower is better) Translates to: SCSKSFPSRTCA*DPSFPSSICDT Trigger: TGTATCACAGATGCTGCTGGGGAAGCTGGGATCTCAAGCACAGGTCCTACTTGGGAACGATTTTGAGCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS CAA 72 bp | GATCCCAGCTTCCCCAGCAGCATCTGTGATACATCCTaGATGTCATTGTACTCATGGAGGAGGGAGATATGC | + |
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Preference number: 6 (lower is better) Translates to: DPSFPSSICDTS*MSLYSWRREIC Trigger: GCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS CAA 90 bp | ACAGCCAGCTTCCCCAGCAGCATCTGTGATACATCCTTGATGTCATaGTACTCATGGAGGAGGGAGATATGCTTCTCCAGCTCAATCACA | + |
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Preference number: 6 (lower is better) Translates to: TASFPSSICDTSLMS*YSWRREICFSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000183946.8 |
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| CDS CAA 90 bp | GATCCCAGCTTCCCCAGCAGCATCTGTGATACATCCTTGATGTCATaGTACTCATGGAGGAGGGAGATATGCTTCTCCAGCTCAATCACA | + |
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Preference number: 6 (lower is better) Translates to: DPSFPSSICDTSLMS*YSWRREICFSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS CAA 90 bp | TCTGCAGGCCATGAAGAACAGGAACCATTACTGCAATCTCGCAGGTaGGTAAGTCCTGCTCAAAATCGTTCCCAAGTAGGACCTGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SAGHEEQEPLLQSRR*VSPAQNRSQVGPVL Trigger: AAGCACAGGTCCTACTTGGGAACGATTTTGAGCAGGACTTACCAACCTGCGAGATTGCAGTAATGGTTCCTGTTCTTCATGGCCTGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS TCA 72 bp | ATCCCAGCTTCCCCAGCAGCATCTGTGATACATCCTTaGTGTCATTGTACTCATGGAGGAGGGAGATATGCT | + |
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Preference number: 6 (lower is better) Translates to: IPASPAASVIHP*CHCTHGGGRYA Trigger: AGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCTGCTGGGGAAGCTGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS CAA 72 bp | CATGAAGAACAGGAACCATTACTGCAATCTCGCAGGTaGGTAAGTCCTGCTCAAAATCGTTCCCAAGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: HEEQEPLLQSRR*VSPAQNRSQVG Trigger: TCCTACTTGGGAACGATTTTGAGCAGGACTTACCAACCTGCGAGATTGCAGTAATGGTTCCTGTTCTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140406.8 |
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| CDS CCA 72 bp | AGCATCTGTGATACATCCTTGATGTCATTGTACTCATaGAGGAGGGAGATATGCTTCTCCAGCTCAATCACA | + |
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Preference number: 6 (lower is better) Translates to: SICDTSLMSLYS*RREICFSSSIT Trigger: TGTGATTGAGCTGGAGAAGCATATCTCCCTCCTCCATGAGTACAATGACATCAAGGATGTATCACAGATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050410.11 ENSMUST00000113395.8 ENSMUST00000113400.3 ENSMUST00000140406.8 ENSMUST00000183946.8 |
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