Pregenerated sensors for SVS6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017000Ensembl transcript IDs: ENSMUST00000017144.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAAGTCTCCATCCTCAGGACATGAGGCGCTTCATCGACACTGTGTaGCTCCATCATTTCTGTCCAGGTTTTCAGTTCCTTAGTTGCCAT | + |
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Preference number: 1 (lower is better) Translates to: GSLHPQDMRRFIDTV*LHHFCPGFQFLSCH Trigger: ATGGCAACTAAGGAACTGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATGTCCTGAGGATGGAGACTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| 3UTR TCA 72 bp | CATCCTCAGGACATGAGGCGCTTCATCGACACTGTGTaGCTCCATCATTTCTGTCCAGGTTTTCAGTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: HPQDMRRFIDTV*LHHFCPGFQFL Trigger: AAGGAACTGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATGTCCTGAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | TCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTTCAGTTCCTTAGTTGCCTTCACGGGGCCTCTTTaGAGCTGTTTCTGTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: STLCDSIISVQVFSSLVAFTGPL*SCFCHQ Trigger: CTGGTGACAGAAACAGCTGCAAAGAGGCCCCGTGAA...GGCAACTAAGGAACTGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | TCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTTCAGTTCCTTAGTTGCCCTGCAGATGCTCTCTTaGTGTCTTCCCCATCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: STLCDSIISVQVFSSLVALQMLS*CLPHLH Trigger: GTGAAGATGGGGAAGACAGCAAGAGAGCATCTGCAG...GGCAACTAAGGAACTGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | TCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTTCAGTTCCTTAGTTGCCAACTCTTCAATTGCTTaGGAGAACCTTTCACGGGGC | + |
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Preference number: 4 (lower is better) Translates to: STLCDSIISVQVFSSLVANSSIA*ENLSRG Trigger: GCCCCGTGAAAGGTTCTCGCAAGCAATTGAAGAGTT...GGCAACTAAGGAACTGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | GGACATGAGGCGCTTCATCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTTCTTGTGCAAACTGTTaGTTCTCCTTTTTCCGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GHEALHRHCVTPSFLSRFSCANC*FSFFRK Trigger: CTTGCGGAAAAAGGAGAAGCAACAGTTTGCACAAGA...AAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | GGACATGAGGCGCTTCATCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTAGAAAACTCTTCAATTaGTTGCGAGAACCTTTCACG | + |
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Preference number: 4 (lower is better) Translates to: GHEALHRHCVTPSFLSRFRKLFN*LREPFT Trigger: CGTGAAAGGTTCTCGCAAGCAATTGAAGAGTTTTCT...AAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | GGACATGAGGCGCTTCATCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTCCTCCTCATGGACAATaGTTTTTGGACTATTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: GHEALHRHCVTPSFLSRFPPHGQ*FLDYLL Trigger: AAGCAAATAGTCCAAAAAGCATTGTCCATGAGGAGG...AAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATGTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | GTTGTCTTTTTATTGGAAAGAGGATATTCTCATAACCACGGGTTTAGAAATCTCGCTTTTTGGACTATTTaGTTCAGAACTTTCACTAGA | + |
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Preference number: 4 (lower is better) Translates to: VVFLLERGYSHNHGFRNLAFWTI*FRTFTR Trigger: TCTAGTGAAAGTTCTGAAGCAAATAGTCCAAAAAGC...GAGATTTCTAAACCCGTGGTTATGAGAATATCCTCTTTCCAATAAAAAGACAAC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR GCA 90 bp | GTTGTCTTTTTATTGGAAAGAGGATATTCTCATAACCACGGGTTTAGAAATCTCTTTATCCATTTCTTGTaGAAACTGTTGCTTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VVFLLERGYSHNHGFRNLFIHFL*KLLLLL Trigger: AAGGAGAAGCAACAGTTTGCACAAGAAATGGATAAA...GAGATTTCTAAACCCGTGGTTATGAGAATATCCTCTTTCCAATAAAAAGACAAC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR CCA 90 bp | GTTGTCTTTTTATTGGAAAGAGGATATTCTCATAACCACGGGTTTAGAAATCTCATGGACAATGCTTTTTaGACTATTTGCTTCAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: VVFLLERGYSHNHGFRNLMDNAF*TICFRT Trigger: AGTTCTGAAGCAAATAGTCCAAAAAGCATTGTCCAT...GAGATTTCTAAACCCGTGGTTATGAGAATATCCTCTTTCCAATAAAAAGACAAC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR CAA 90 bp | GGACATGAGGCGCTTCATCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTCCTGCAGATGCTCTCTaGCTGTCTTCCCCATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GHEALHRHCVTPSFLSRFPADAL*LSSPSS Trigger: TGAAGATGGGGAAGACAGCAAGAGAGCATCTGCAGG...AAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR CAA 90 bp | TCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTTCAGTTCCTTAGTTGCCTTTCACGGGGCCTCTTaGCAGCTGTTTCTGTCACCA | + |
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Preference number: 5 (lower is better) Translates to: STLCDSIISVQVFSSLVAFHGAS*QLFLSP Trigger: TGGTGACAGAAACAGCTGCAAAGAGGCCCCGTGAAA...GGCAACTAAGGAACTGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS GCA 90 bp | AGAAAACTCTTCAATTGCTTGCGAGAACCTTTCACGGGGCCTCTTTaGAGCTGTTTCTGTCACCAGAACAAGGAGCATTGTAAGGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: RKLFNCLREPFTGPL*SCFCHQNKEHCKEK Trigger: TTTCTCCTTACAATGCTCCTTGTTCTGGTGACAGAAACAGCTGCAAAGAGGCCCCGTGAAAGGTTCTCGCAAGCAATTGAAGAGTTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS-3UTR CAA 90 bp | CATGAGGCGCTTCATCGACACTGTGTGACTCCATCATTTCTGTCCAGGTTTTCATTCTTGTGCAAACTGTaGCTTCTCCTTTTTCCGCAA | + |
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Preference number: 5 (lower is better) Translates to: HEALHRHCVTPSFLSRFSFLCKL*LLLFPQ Trigger: TTGCGGAAAAAGGAGAAGCAACAGTTTGCACAAGAA...TGAAAACCTGGACAGAAATGATGGAGTCACACAGTGTCGATGAAGCGCCTCATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS CAA 72 bp | CTTCAATTGCTTGCGAGAACCTTTCACGGGGCCTCTTaGCAGCTGTTTCTGTCACCAGAACAAGGAGCATTG | + |
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Preference number: 6 (lower is better) Translates to: LQLLARTFHGAS*QLFLSPEQGAL Trigger: CAATGCTCCTTGTTCTGGTGACAGAAACAGCTGCAAAGAGGCCCCGTGAAAGGTTCTCGCAAGCAATTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS GCA 72 bp | GCTTCAGAACTTTCACTAGAAAACTCTTCAATTGCTTaGGAGAACCTTTCACGGGGCCTCTTTGCAGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: ASELSLENSSIA*ENLSRGLFAAV Trigger: AACAGCTGCAAAGAGGCCCCGTGAAAGGTTCTCGCAAGCAATTGAAGAGTTTTCTAGTGAAAGTTCTGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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| CDS CAA 72 bp | TGCTTCAGAACTTTCACTAGAAAACTCTTCAATTGCTaGCGAGAACCTTTCACGGGGCCTCTTTGCAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: CFRTFTRKLFNC*REPFTGPLCSC Trigger: ACAGCTGCAAAGAGGCCCCGTGAAAGGTTCTCGCAAGCAATTGAAGAGTTTTCTAGTGAAAGTTCTGAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017144.3 |
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