RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SVS5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017004

Ensembl transcript IDs: ENSMUST00000017148.8, ENSMUST00000149370.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CAA 90 bp GGATCTTTAAGAAAACAAACACGAGGAGGAAGTGAGAGGCCCCGGACTGTTTCTAGGCCCCATGGAAACTaGAATCCTGAAGACATCACC +
Preference number: 3 (lower is better)
Translates to: GSLRKQTRGGSERPRTVSRPHGN*NPEDIT
Trigger: GGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCT...AGAAACAGTCCGGGGCCTCTCACTTCCTCCTCGTGTTTGTTTTCTTAAAGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR TCA 90 bp ACTGTTTCTAGGCCCCATGGAAACTTGAATCCTGAAGACATCACCGGCTTCTCTCTCCATGGCAGAACCTaGTCCACTGCCTCCCGCCCG +
Preference number: 4 (lower is better)
Translates to: TVSRPHGNLNPEDITGFSLHGRT*STASRP
Trigger: CGGGCGGGAGGCAGTGGATCAGGTTCTGCCATGGAG...AGAGAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCTAGAAACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017148.8
3UTR CAA 72 bp GAGAGGCCCCGGACTGTTTCTAGGCCCCATGGAAACTaGAATCCTGAAGACATCACCGGCTTCTCTCAGTTC +
Preference number: 4 (lower is better)
Translates to: ERPRTVSRPHGN*NPEDITGFSQF
Trigger: GAACTGAGAGAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCTAGAAACAGTCCGGGGCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR CCA 90 bp GGATCTTTAAGAAAACAAACACGAGGAGGAAGTGAGAGGCCCCGGACTGTTTCTCGCTGTATTCCTCCATaGCAGAACCTGATCCACTGC +
Preference number: 4 (lower is better)
Translates to: GSLRKQTRGGSERPRTVSRCIPP*QNLIHC
Trigger: GCAGTGGATCAGGTTCTGCCATGGAGGAATACAGCG...AGAAACAGTCCGGGGCCTCTCACTTCCTCCTCGTGTTTGTTTTCTTAAAGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017148.8
CDS-3UTR GCA 90 bp CGGACTGTTTCTAGGCCCCATGGAAACTTGAATCCTGAAGACATCACCGGCTTCAACTACTCATTTCGCTaGTGCTACTGCTTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: RTVSRPHGNLNPEDITGFNYSFR*CYCFPR
Trigger: ACGAGGAAAGCAGTAGCAGCAGCGAAATGAGTAGTT...GAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCTAGAAACAGTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR GCA 90 bp AGTGAGAGGCCCCGGACTGTTTCTAGGCCCCATGGAAACTTGAATCCTGAAGACACTCATTCCTCCTCCTaGTTGAGATCCTCTCATTTT +
Preference number: 4 (lower is better)
Translates to: SERPRTVSRPHGNLNPEDTHSSS*LRSSHF
Trigger: AAAATGAGAGGATCTCAAGCAGGAGGAGGAATGAGT...GTCTTCAGGATTCAAGTTTCCATGGGGCCTAGAAACAGTCCGGGGCCTCTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR TCA 90 bp GGATCTTTAAGAAAACAAACACGAGGAGGAAGTGAGAGGCCCCGGACTGTTTCTATTCCTCCTCCTGCTTaGGATCCTCTCATTTTGAGA +
Preference number: 4 (lower is better)
Translates to: GSLRKQTRGGSERPRTVSIPPPA*DPLILR
Trigger: TCTCAAAATGAGAGGATCTCAAGCAGGAGGAGGAAT...AGAAACAGTCCGGGGCCTCTCACTTCCTCCTCGTGTTTGTTTTCTTAAAGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR GCA 90 bp CATGGAAACTTGAATCCTGAAGACATCACCGGCTTCTCTCAGTTCAGTGACACCAACTACTCATTTCGCTaGTGCTACTGCTTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: HGNLNPEDITGFSQFSDTNYSFR*CYCFPR
Trigger: ACGAGGAAAGCAGTAGCAGCAGCGAAATGAGTAGTT...GGTGTCACTGAACTGAGAGAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR CCA 90 bp AGGCCCCATGGAAACTTGAATCCTGAAGACATCACCGGCTTCTCTCAGTTCAGTATTTTGAGACCAAAATaGCCGCCGGAACTACTCATT +
Preference number: 4 (lower is better)
Translates to: RPHGNLNPEDITGFSQFSILRPK*PPELLI
Trigger: AATGAGTAGTTCCGGCGGCCATTTTGGTCTCAAAAT...ACTGAACTGAGAGAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR GCA 90 bp GGATCTTTAAGAAAACAAACACGAGGAGGAAGTGAGAGGCCCCGGACTGTTTCTACTCATTCCTCCTCCTaGTTGAGATCCTCTCATTTT +
Preference number: 4 (lower is better)
Translates to: GSLRKQTRGGSERPRTVSTHSSS*LRSSHF
Trigger: AAAATGAGAGGATCTCAAGCAGGAGGAGGAATGAGT...AGAAACAGTCCGGGGCCTCTCACTTCCTCCTCGTGTTTGTTTTCTTAAAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR CCA 90 bp GGATCTTTAAGAAAACAAACACGAGGAGGAAGTGAGAGGCCCCGGACTGTTTCTATTTTGAGACCAAAATaGCCGCCGGAACTACTCATT +
Preference number: 4 (lower is better)
Translates to: GSLRKQTRGGSERPRTVSILRPK*PPELLI
Trigger: AATGAGTAGTTCCGGCGGCCATTTTGGTCTCAAAAT...AGAAACAGTCCGGGGCCTCTCACTTCCTCCTCGTGTTTGTTTTCTTAAAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS TCA 90 bp ACTCCAAGAGTTCTCACTTACGCTGTATTCCTCCATGGCAGAACCTaGTCCACTGCCTCCCGCCCGAATCTTTATACCCATGTGACTACT +
Preference number: 5 (lower is better)
Translates to: TPRVLTYAVFLHGRT*STASRPNLYTHVTT
Trigger: AGTAGTCACATGGGTATAAAGATTCGGGCGGGAGGCAGTGGATCAGGTTCTGCCATGGAGGAATACAGCGTAAGTGAGAACTCTTGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017148.8
CDS-3UTR CAA 90 bp AGGCCCCGGACTGTTTCTAGGCCCCATGGAAACTTGAATCCTGAAGACATCACCTTGAGTATCCGGCTCTaGACCCTGGTTTTAAAGGAA +
Preference number: 5 (lower is better)
Translates to: RPRTVSRPHGNLNPEDITLSIRL*TLVLKE
Trigger: TTCCTTTAAAACCAGGGTCAAGAGCCGGATACTCAA...GGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCTAGAAACAGTCCGGGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR CAA 90 bp TCTAGGCCCCATGGAAACTTGAATCCTGAAGACATCACCGGCTTCTCTCAGTTCCATTCCTCCTCCTGCTaGAGATCCTCTCATTTTGAG +
Preference number: 5 (lower is better)
Translates to: SRPHGNLNPEDITGFSQFHSSSC*RSSHFE
Trigger: CTCAAAATGAGAGGATCTCAAGCAGGAGGAGGAATG...GAACTGAGAGAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS-3UTR CAA 90 bp ACTGTTTCTAGGCCCCATGGAAACTTGAATCCTGAAGACATCACCGGCTTCTCTCATTCCTCCTCCTGCTaGAGATCCTCTCATTTTGAG +
Preference number: 5 (lower is better)
Translates to: TVSRPHGNLNPEDITGFSHSSSC*RSSHFE
Trigger: CTCAAAATGAGAGGATCTCAAGCAGGAGGAGGAATG...AGAGAAGCCGGTGATGTCTTCAGGATTCAAGTTTCCATGGGGCCTAGAAACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2
CDS GCA 72 bp TTCCGCCGACTGAGAGAACCTTTCACGGGCTCCCCTTaGTTCTGTCACCAGAACGAGGAGCAATGTAAGGAG +
Preference number: 6 (lower is better)
Translates to: FRRLREPFTGSP*FCHQNEEQCKE
Trigger: CTCCTTACATTGCTCCTCGTTCTGGTGACAGAAGCAAGGGGAGCCCGTGAAAGGTTCTCTCAGTCGGCGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017148.8
CDS CCA 72 bp TACTCCAAGAGTTCTCACTTACGCTGTATTCCTCCATaGCAGAACCTGATCCACTGCCTCCCGCCCGAATCT +
Preference number: 6 (lower is better)
Translates to: YSKSSHLRCIPP*QNLIHCLPPES
Trigger: AGATTCGGGCGGGAGGCAGTGGATCAGGTTCTGCCATGGAGGAATACAGCGTAAGTGAGAACTCTTGGAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017148.8
CDS TCA 72 bp GTTCTCACTTACGCTGTATTCCTCCATGGCAGAACCTaGTCCACTGCCTCCCGCCCGAATCTTTATACCCAT +
Preference number: 6 (lower is better)
Translates to: VLTYAVFLHGRT*STASRPNLYTH
Trigger: ATGGGTATAAAGATTCGGGCGGGAGGCAGTGGATCAGGTTCTGCCATGGAGGAATACAGCGTAAGTGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017148.8
CDS TCA 72 bp AACTCATTCCTCCTCCTGCTTGAGATCCTCTCATTTTaGGACCAAAATGGCCGCCGGAACTACTCATTTCGC +
Preference number: 6 (lower is better)
Translates to: NSFLLLLEILSF*DQNGRRNYSFR
Trigger: GCGAAATGAGTAGTTCCGGCGGCCATTTTGGTCTCAAAATGAGAGGATCTCAAGCAGGAGGAGGAATGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017148.8
ENSMUST00000149370.2