RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SVS4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016998

Ensembl transcript IDs: ENSMUST00000017142.3

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCATGGGAAGTAAATGCCATCCAGGGACTGCCTCTGAGACCACATaGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCTGGCGATA +
Preference number: 1 (lower is better)
Translates to: SMGSKCHPGTASETT*ELYAEDIMGSVLAI
Trigger: TATCGCCAGAACAGAGCCCATGATGTCTTCAGCATACAGCTCCCATGTGGTCTCAGAGGCAGTCCCTGGATGGCATTTACTTCCCATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
3UTR CCA 90 bp AGACCACATGGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCTaGCGATATGGCTCCAGCATATTGGTCCAGATGTTCAGCTGGTCA +
Preference number: 1 (lower is better)
Translates to: RPHGSCMLKTSWALF*RYGSSILVQMFSWS
Trigger: TGACCAGCTGAACATCTGGACCAATATGCTGGAGCCATATCGCCAGAACAGAGCCCATGATGTCTTCAGCATACAGCTCCCATGTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
3UTR CCA 90 bp TGGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCTGGCGATATaGCTCCAGCATATTGGTCCAGATGTTCAGCTGGTCAATGCAGTA +
Preference number: 1 (lower is better)
Translates to: WELYAEDIMGSVLAI*LQHIGPDVQLVNAV
Trigger: TACTGCATTGACCAGCTGAACATCTGGACCAATATGCTGGAGCCATATCGCCAGAACAGAGCCCATGATGTCTTCAGCATACAGCTCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
3UTR GCA 90 bp ATGTTAGGTTTAAGAACCTCAAGACAAACAAGCATGGGAAGTAAATaGCATCCAGGGACTGCCTCTGAGACCACATGGGAGCTGTATGCT +
Preference number: 1 (lower is better)
Translates to: MLGLRTSRQTSMGSK*HPGTASETTWELYA
Trigger: AGCATACAGCTCCCATGTGGTCTCAGAGGCAGTCCCTGGATGGCATTTACTTCCCATGCTTGTTTGTCTTGAGGTTCTTAAACCTAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
3UTR CCA 72 bp GGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCTaGCGATATGGCTCCAGCATATTGGTCCAGATGTTC +
Preference number: 3 (lower is better)
Translates to: GSCMLKTSWALF*RYGSSILVQMF
Trigger: GAACATCTGGACCAATATGCTGGAGCCATATCGCCAGAACAGAGCCCATGATGTCTTCAGCATACAGCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
3UTR CCA 72 bp TATGCTGAAGACATCATGGGCTCTGTTCTGGCGATATaGCTCCAGCATATTGGTCCAGATGTTCAGCTGGTC +
Preference number: 3 (lower is better)
Translates to: YAEDIMGSVLAI*LQHIGPDVQLV
Trigger: GACCAGCTGAACATCTGGACCAATATGCTGGAGCCATATCGCCAGAACAGAGCCCATGATGTCTTCAGCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS-3UTR TCA 90 bp ACATGGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCTGGCGATATGGCTCTGGCTCAGAACTTCTTaGCATATGGCCTCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: TWELYAEDIMGSVLAIWLWLRTS*HMASAS
Trigger: GGAAGCAGAGGCCATATGTCAAGAAGTTCTGAGCCA...GAGCCATATCGCCAGAACAGAGCCCATGATGTCTTCAGCATACAGCTCCCATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS-3UTR CCA 90 bp CTGAGACCACATGGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCTGGCGAGAACTTCTTGACATATaGCCTCTGCTTCCCATCGAG +
Preference number: 4 (lower is better)
Translates to: LRPHGSCMLKTSWALFWRELLDI*PLLPIE
Trigger: CTCGATGGGAAGCAGAGGCCATATGTCAAGAAGTTC...TCGCCAGAACAGAGCCCATGATGTCTTCAGCATACAGCTCCCATGTGGTCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS-3UTR TCA 90 bp GACAAACAAGCATGGGAAGTAAATGCCATCCAGGGACTGCCTCTGAGACCACATCACTCGAGTGCATCTTaGGAAAACCGGCTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: DKQAWEVNAIQGLPLRPHHSSAS*ENRLFF
Trigger: AAAGAAGAGCCGGTTTTCTCAAGATGCACTCGAGTG...ATGTGGTCTCAGAGGCAGTCCCTGGATGGCATTTACTTCCCATGCTTGTTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS-3UTR GCA 90 bp AGTAAATGCCATCCAGGGACTGCCTCTGAGACCACATGGGAGCTGTATGCTGAAACAGTTTCTTCCGACTaGAAGAATTTTTCCTTAGTT +
Preference number: 4 (lower is better)
Translates to: SKCHPGTASETTWELYAETVSSD*KNFSLV
Trigger: AACTAAGGAAAAATTCTTGCAGTCGGAAGAAACTGT...TTCAGCATACAGCTCCCATGTGGTCTCAGAGGCAGTCCCTGGATGGCATTTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS-3UTR CAA 90 bp GAAGTAAATGCCATCCAGGGACTGCCTCTGAGACCACATGGGAGCTGTATGCTGCTGGCTCAGAACTTCTaGACATATGGCCTCTGCTTC +
Preference number: 5 (lower is better)
Translates to: EVNAIQGLPLRPHGSCMLLAQNF*TYGLCF
Trigger: GAAGCAGAGGCCATATGTCAAGAAGTTCTGAGCCAG...CAGCATACAGCTCCCATGTGGTCTCAGAGGCAGTCCCTGGATGGCATTTACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS GCA 90 bp CCTCTGCTTCCCATCGAGAAGCTCTCTCTGACAGTTTCTTCCGACTaGAAGAATTTTTCCTTAGTTTTCTTCCCAATGGCTCCTGTCACC +
Preference number: 5 (lower is better)
Translates to: PLLPIEKLSLTVSSD*KNFSLVFFPMAPVT
Trigger: GGTGACAGGAGCCATTGGGAAGAAAACTAAGGAAAAATTCTTGCAGTCGGAAGAAACTGTCAGAGAGAGCTTCTCGATGGGAAGCAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS-3UTR CAA 90 bp CTGCCTCTGAGACCACATGGGAGCTGTATGCTGAAGACATCATGGGCTCTGTTCGGCTCTTCTTTCTCTTaGAATATGAACTCTCACCTT +
Preference number: 5 (lower is better)
Translates to: LPLRPHGSCMLKTSWALFGSSFS*NMNSHL
Trigger: AAGGTGAGAGTTCATATTCAAAGAGAAAGAAGAGCC...GAACAGAGCCCATGATGTCTTCAGCATACAGCTCCCATGTGGTCTCAGAGGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3
CDS GCA 72 bp CCCATCGAGAAGCTCTCTCTGACAGTTTCTTCCGACTaGAAGAATTTTTCCTTAGTTTTCTTCCCAATGGCT +
Preference number: 6 (lower is better)
Translates to: PIEKLSLTVSSD*KNFSLVFFPMA
Trigger: AGCCATTGGGAAGAAAACTAAGGAAAAATTCTTGCAGTCGGAAGAAACTGTCAGAGAGAGCTTCTCGATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017142.3