Pregenerated sensors for SVS3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050383Ensembl transcript IDs: ENSMUST00000063132.6
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTGCTGCAACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTaGTGGCATCCGTGCAAGGTGTTAAGGACTACAGGGTGGTCAACA | + |
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Preference number: 1 (lower is better) Translates to: VAATLESLRKKCVSG*WHPCKVLRTTGWST Trigger: TGTTGACCACCCTGTAGTCCTTAACACCTTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTTGCAGCAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTATTAAGGACTACAGGGTaGTCAACATCTTCAGGACAT | + |
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Preference number: 2 (lower is better) Translates to: KDDMNLTVAGHERRWKSVLRTTG*STSSGH Trigger: ATGTCCTGAAGATGTTGACCACCCTGTAGTCCTTAA...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| 3UTR TCA 72 bp | ACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTaGTGGCATCCGTGCAAGGTGTTAAGGACTACAGGG | + |
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Preference number: 3 (lower is better) Translates to: TLESLRKKCVSG*WHPCKVLRTTG Trigger: CCCTGTAGTCCTTAACACCTTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| 3UTR CCA 72 bp | TGCAACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTaGGTGATGGCATCCGTGCAAGGTGTTAAGGACTAC | + |
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Preference number: 3 (lower is better) Translates to: CNIRKSQEEMCE*VMASVQGVKDY Trigger: GTAGTCCTTAACACCTTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR TCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAAACTTGTCAGTTCCTGTaGACTGAGTGCCTCTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQTCQFL*TECLSH Trigger: ATGGGAGAGGCACTCAGTTCACAGGAACTGACAAGT...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR TCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTATCAGTTCCTGTGAACTaGGTGCCTCTCCCATGTCAG | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVSVPVN*VPLPCQ Trigger: CTGACATGGGAGAGGCACTCAGTTCACAGGAACTGA...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR TCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAATTGGGATTTTATTTGTaGCTGGGATGGCAGCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQLGFYL*LGWQLG Trigger: TCCCAGCTGCCATCCCAGTCACAAATAAAATCCCAA...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR TCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTACTGCCCTTGACTTGCTaGGGAATGTCTTCTCGCAGA | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVLPLTC*GMSSRR Trigger: TCTGCGAGAAGACATTCCTCAGCAAGTCAAGGGCAG...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTAGACTGGGATGGCAGCTaGGATTTTTGTTGGGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVDWDGS*DFCWAS Trigger: GCTTGCCCAACAAAAATCCCAGCTGCCATCCCAGTC...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAAATGCTGCTGTTTTCCTaGACTGCCTGTGCTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQMLLFS*TACAFL Trigger: AAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCAT...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTAAATCACCCCTCCTCTTaGACAGTAGCACATCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVNHPSS*TVAHPR Trigger: CCTGGGATGTGCTACTGTCCAAGAGGAGGGGTGATT...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTATTCAGAGGGGCTCCGTaGGATTTCAGCATGGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVFRGAP*DFSMVC Trigger: ACAAACCATGCTGAAATCCCACGGAGCCCCTCTGAA...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTAGCGGCGTCTGAACTGTaGGTAGAATGCTGCTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVAASEL*VECCCF Trigger: AAAACAGCAGCATTCTACCCACAGTTCAGACGCCGC...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAATCAGTGAAGGCATCTTaGTATAGAATCACCCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQSVKAS*YRITPP Trigger: AGGAGGGGTGATTCTATACCAAGATGCCTTCACTGA...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR GCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTAAGCATCCTGGCCATATaGATGGTGCTTAGTTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVSILAI*MVLSLH Trigger: GTGCAAACTAAGCACCATGCATATGGCCAGGATGCT...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAAAGCTGGGATTTTTGTTaGGCAAGCTCATCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQSWDFC*ASSSSS Trigger: AGAAGAAGATGAGCTTGCCCAACAAAAATCCCAGCT...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR TCA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTATTTCAGCATGGTTTGTaGCTTCATCTGCCCTATGGT | + |
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Preference number: 4 (lower is better) Translates to: KDDMNLTVAGHERRWKSVFQHGL*LHLPYG Trigger: ACCATAGGGCAGATGAAGTCACAAACCATGCTGAAA...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR GCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAAGCATGGTGCTTAGTTTaGACAAAGATGCTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQAWCLV*TKMLSS Trigger: TGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGC...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAAGATTTTATTTGTGACTaGGATGGCAGCTGGGATTTT | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQDFICD*DGSWDF Trigger: AAAATCCCAGCTGCCATCCCAGTCACAAATAAAATC...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CCA 90 bp | AACATTAGAAAGTCTCAGGAAGAAATGTGTGAGTGGGTGATGGCATCCGTGCAAGATTTTACTTGGGTTTaGGATTTTATTTGTGACTGG | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEEMCEWVMASVQDFTWV*DFICDW Trigger: CCAGTCACAAATAAAATCCCAAACCCAAGTAAAATC...TTGCACGGATGCCATCACCCACTCACACATTTCTTCCTGAGACTTTCTAATGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CCA 90 bp | TTTCCTGGACTGCCTGTGCTTTCCTTTGAGCCTGTGAACCTTTGCTaGCTGTTGACGCACTTGGGCCAGGTCTTCAGCCAGGCCATATCC | + |
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Preference number: 5 (lower is better) Translates to: FPGLPVLSFEPVNLC*LLTHLGQVFSQAIS Trigger: GGATATGGCCTGGCTGAAGACCTGGCCCAAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAGTCCAGGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS TCA 90 bp | GTGGGTAGAATGCTGCTGTTTTCCTGGACTGCCTGTGCTTTCCTTTaGGCCTGTGAACCTTTGCTGGCTGTTGACGCACTTGGGCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: VGRMLLFSWTACAFL*ACEPLLAVDALGPG Trigger: ACCTGGCCCAAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCATTCTACCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS GCA 90 bp | TTCAGAGGGGCTCCGTGGGATTTCAGCATGGTTTGTGACTTCATCTaGCCTATGGTCTTTAGCTGGCCTGGTTGGGACTTCAGTTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: FRGAPWDFSMVCDFI*PMVFSWPGWDFSWA Trigger: AGCCCAACTGAAGTCCCAACCAGGCCAGCTAAAGACCATAGGGCAGATGAAGTCACAAACCATGCTGAAATCCCACGGAGCCCCTCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS TCA 90 bp | CTTCACAAACTATGTCTTCCTTTAAACTTGTCAGTTCCTGTGAACTaGGTGCCTCTCCCATGTCAGCATCAGCATCCTGGCCATATGCAT | + |
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Preference number: 5 (lower is better) Translates to: LHKLCLPLNLSVPVN*VPLPCQHQHPGHMH Trigger: ATGCATATGGCCAGGATGCTGATGCTGACATGGGAGAGGCACTCAGTTCACAGGAACTGACAAGTTTAAAGGAAGACATAGTTTGTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS GCA 90 bp | GCCATATGCATGGTGCTTAGTTTGCACAAAGATGCTTTCTTCAGGTaGCTCTTCCTGTTCTTCTTTGTGCCCATAGAGGAACTGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: AICMVLSLHKDAFFR*LFLFFFVPIEELAF Trigger: AAAAGCCAGTTCCTCTATGGGCACAAAGAAGAACAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGCATATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS-3UTR CAA 90 bp | AAAGATGATATGAACTTGACAGTGGCAGGGCATGAGAGAAGATGGAAAAGTGTATGCGTAGGATTTTACTaGGGTTTGGGATTTTATTTG | + |
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Preference number: 5 (lower is better) Translates to: KDDMNLTVAGHERRWKSVCVGFY*GLGFYL Trigger: CAAATAAAATCCCAAACCCAAGTAAAATCCTACGCA...TACACTTTTCCATCTTCTCTCATGCCCTGCCACTGTCAAGTTCATATCATCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CAA 90 bp | GGACTGCCTGTGCTTTCCTTTGAGCCTGTGAACCTTTGCTGGCTGTaGACGCACTTGGGCCAGGTCTTCAGCCAGGCCATATCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: GLPVLSFEPVNLCWL*THLGQVFSQAISSA Trigger: GGCAGAGGATATGGCCTGGCTGAAGACCTGGCCCAAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS TCA 72 bp | GCACAAAGTACCGAGGGTAGGGCCGAGAGCGGCGTCTaGACTGTGGGTAGAATGCTGCTGTTTTCCTGGACT | + |
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Preference number: 6 (lower is better) Translates to: AQSTEGRAESGV*TVGRMLLFSWT Trigger: AGTCCAGGAAAACAGCAGCATTCTACCCACAGTTCAGACGCCGCTCTCGGCCCTACCCTCGGTACTTTGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CAA 72 bp | TTTGAGCCTGTGAACCTTTGCTGGCTGTTGACGCACTaGGGCCAGGTCTTCAGCCAGGCCATATCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: FEPVNLCWLLTH*GQVFSQAISSA Trigger: GGCAGAGGATATGGCCTGGCTGAAGACCTGGCCCAAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS TCA 72 bp | ATGCTGCTGTTTTCCTGGACTGCCTGTGCTTTCCTTTaGGCCTGTGAACCTTTGCTGGCTGTTGACGCACTT | + |
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Preference number: 6 (lower is better) Translates to: MLLFSWTACAFL*ACEPLLAVDAL Trigger: AAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CCA 72 bp | GAACTGAGTGCCTCTCCCATGTCAGCATCAGCATCCTaGCCATATGCATGGTGCTTAGTTTGCACAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: ELSASPMSASAS*PYAWCLVCTKM Trigger: CATCTTTGTGCAAACTAAGCACCATGCATATGGCCAGGATGCTGATGCTGACATGGGAGAGGCACTCAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CCA 72 bp | TGTAGGACTTCAGAGGGGCTCCGTGGGATTTCAGCATaGTTTGTGACTTCATCTGCCCTATGGTCTTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: CRTSEGLRGISA*FVTSSALWSLA Trigger: AGCTAAAGACCATAGGGCAGATGAAGTCACAAACCATGCTGAAATCCCACGGAGCCCCTCTGAAGTCCTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS TCA 72 bp | CTATGTCTTCCTTTAAACTTGTCAGTTCCTGTGAACTaGGTGCCTCTCCCATGTCAGCATCAGCATCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LCLPLNLSVPVN*VPLPCQHQHPG Trigger: GCCAGGATGCTGATGCTGACATGGGAGAGGCACTCAGTTCACAGGAACTGACAAGTTTAAAGGAAGACATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS GCA 72 bp | GCATCAGCATCCTGGCCATATGCATGGTGCTTAGTTTaGACAAAGATGCTTTCTTCAGGTGCCTCTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: ASASWPYAWCLV*TKMLSSGASSC Trigger: ACAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGCATATGGCCAGGATGCTGATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CAA 72 bp | AGCATCAGCATCCTGGCCATATGCATGGTGCTTAGTTaGCACAAAGATGCTTTCTTCAGGTGCCTCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SISILAICMVLS*HKDAFFRCLFL Trigger: CAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGCATATGGCCAGGATGCTGATGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CAA 72 bp | GACAGTAGCACATCCCAGGACCTGGGTAGAAAGATTTaGTGTGATGAACACTGCCCTGTAGCTGCTCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: DSSTSQDLGRKI*CDEHCPVAALE Trigger: TTCAAGAGCAGCTACAGGGCAGTGTTCATCACACAAAATCTTTCTACCCAGGTCCTGGGATGTGCTACTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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| CDS CCA 72 bp | TGGGTTTGGGATTTTATTTGTGACTGGGATGGCAGCTaGGATTTTTGTTGGGCAAGCTCATCTTCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: WVWDFICDWDGS*DFCWASSSSSS Trigger: TGAAGAAGAAGATGAGCTTGCCCAACAAAAATCCCAGCTGCCATCCCAGTCACAAATAAAATCCCAAACCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063132.6 |
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