Pregenerated sensors for SVS3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017003Ensembl transcript IDs: ENSMUST00000017147.8, ENSMUST00000109370.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGAGTGGGTCATGGCATCCGTGCAAGGTGTTGAGGACTAGAGAGTaGTCAGCATCTTCAGGACATCACAGTCCACACAGGTCAGGTGAC | + |
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Preference number: 1 (lower is better) Translates to: VSGSWHPCKVLRTRE*SASSGHHSPHRSGD Trigger: GTCACCTGACCTGTGTGGACTGTGATGTCCTGAAGATGCTGACCACTCTCTAGTCCTCAACACCTTGCACGGATGCCATGACCCACTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR-3UTR CCA 90 bp | CCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGTCAGCGAAGGAATGTGTGAGTaGGTCATGGCATCCGTGCAA | + |
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Preference number: 2 (lower is better) Translates to: PKPLGTWRFQQSKANDVSEGMCE*VMASVQ Trigger: TTGCACGGATGCCATGACCCACTCACACATTCCTTC...GCTGACATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR GCA 72 bp | CTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTaGAAGGTGTTGAGGACTAGAGAGTGGTCAGCATCT | + |
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Preference number: 3 (lower is better) Translates to: LRKECVSGSWHP*KVLRTREWSAS Trigger: AGATGCTGACCACTCTCTAGTCCTCAACACCTTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR CCA 72 bp | TCATGGCATCCGTGCAAGGTGTTGAGGACTAGAGAGTaGTCAGCATCTTCAGGACATCACAGTCCACACAGG | + |
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Preference number: 3 (lower is better) Translates to: SWHPCKVLRTRE*SASSGHHSPHR Trigger: CCTGTGTGGACTGTGATGTCCTGAAGATGCTGACCACTCTCTAGTCCTCAACACCTTGCACGGATGCCATGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR CCA 72 bp | TTAGAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATaGCATCCGTGCAAGGTGTTGAGGACTAGAGAGTGG | + |
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Preference number: 3 (lower is better) Translates to: LESLRKECVSGS*HPCKVLRTREW Trigger: CCACTCTCTAGTCCTCAACACCTTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR GCA 72 bp | TTCAACAGTCAAAAGCAAATGATGTCAGCAAGGCTCTaGTTATTAGAGAGCACCTGTGTGAGGTTGCTCCAA | + |
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Preference number: 3 (lower is better) Translates to: FNSQKQMMSARL*LLESTCVRLLQ Trigger: TTGGAGCAACCTCACACAGGTGCTCTCTAATAAGCAGAGCCTTGCTGACATCATTTGCTTTTGACTGTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR TCA 72 bp | AACACTACAAGAGTGTACGGATGTTTCAGTGTGAGTTaGTCATTTGAAAATGTGCCACCCAAGCACCGAAAC | + |
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Preference number: 3 (lower is better) Translates to: NTTRVYGCFSVS*SFENVPPKHRN Trigger: GTTTCGGTGCTTGGGTGGCACATTTTCAAATGATCAACTCACACTGAAACATCCGTACACTCTTGTAGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR TCA 72 bp | TGTGTAACACTACAAGAGTGTACGGATGTTTCAGTGTaGGTTGATCATTTGAAAATGTGCCACCCAAGCACC | + |
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Preference number: 3 (lower is better) Translates to: CVTLQECTDVSV*VDHLKMCHPST Trigger: GGTGCTTGGGTGGCACATTTTCAAATGATCAACTCACACTGAAACATCCGTACACTCTTGTAGTGTTACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| 3UTR CAA 72 bp | GAATGTGTGAGTGGGTCATGGCATCCGTGCAAGGTGTaGAGGACTAGAGAGTGGTCAGCATCTTCAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: ECVSGSWHPCKV*RTREWSASSGH Trigger: ATGTCCTGAAGATGCTGACCACTCTCTAGTCCTCAACACCTTGCACGGATGCCATGACCCACTCACACATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR TCA 90 bp | ACATTAGAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTGCAAGACTTGTCAGTTCCTGTaGACTGAGTGCCCCTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: TLESLRKECVSGSWHPCKTCQFL*TECPSH Trigger: ATGGGAGGGGCACTCAGTTCACAGGAACTGACAAGT...CTTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTCTAATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR TCA 90 bp | TCAGGACATCACAGTCCACACAGGTCAGGTGACTCCTCTAAATGTGTCTTAATTACTTGTCAGTTCCTGTaGACTGAGTGCCCCTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SGHHSPHRSGDSSKCVLITCQFL*TECPSH Trigger: ATGGGAGGGGCACTCAGTTCACAGGAACTGACAAGT...AATTAAGACACATTTAGAGGAGTCACCTGACCTGTGTGGACTGTGATGTCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | AACATTAGAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTGCAACTGTGGGTAGAATGCTaGTGTTTTCCTGGACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEGMCEWVMASVQLWVEC*CFPGLP Trigger: AGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAG...TTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTCTAATGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CCA 90 bp | AACATTAGAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTGCAACGTGGGATTTCAGCATaGTTTGTGACTTCACCTGCC | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEGMCEWVMASVQRGISA*FVTSPA Trigger: GGCAGGTGAAGTCACAAACCATGCTGAAATCCCACG...TTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTCTAATGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | TCAGGACATCACAGTCCACACAGGTCAGGTGACTCCTCTAAATGTGTCTTAATTGCTGTTTTCCTGGACTaGCTGTGCTTTCCTTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SGHHSPHRSGDSSKCVLIAVFLD*LCFPLS Trigger: GCTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGC...AATTAAGACACATTTAGAGGAGTCACCTGACCTGTGTGGACTGTGATGTCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | TCAGGACATCACAGTCCACACAGGTCAGGTGACTCCTCTAAATGTGTCTTAATTCTGTGGGTAGAATGCTaGTGTTTTCCTGGACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SGHHSPHRSGDSSKCVLILWVEC*CFPGLP Trigger: AGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAG...AATTAAGACACATTTAGAGGAGTCACCTGACCTGTGTGGACTGTGATGTCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | AACATTAGAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTGCAAGAACTGTGGGTAGAATaGTGCTGTTTTCCTGGACTG | + |
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Preference number: 4 (lower is better) Translates to: NIRKSQEGMCEWVMASVQELWVE*CCFPGL Trigger: CAGTCCAGGAAAACAGCAGCATTCTACCCACAGTTC...TTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTCTAATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CCA 90 bp | TCAGGACATCACAGTCCACACAGGTCAGGTGACTCCTCTAAATGTGTCTTAATTCGTGGGATTTCAGCATaGTTTGTGACTTCACCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SGHHSPHRSGDSSKCVLIRGISA*FVTSPA Trigger: GGCAGGTGAAGTCACAAACCATGCTGAAATCCCACG...AATTAAGACACATTTAGAGGAGTCACCTGACCTGTGTGGACTGTGATGTCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | CCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGTCAGCGAGTTCTATCCCAGCTaGTTTCTTCTCCAGAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: PKPLGTWRFQQSKANDVSEFYPS*FLLQKE Trigger: CTCCTTCTGGAGAAGAAAGCAGCTGGGATAGAACTC...GCTGACATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | TTAGAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTGCAAGGTGTCATGGTGCTTAGTTTaGACAAAGATGCTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LESLRKECVSGSWHPCKVSWCLV*TKMLSS Trigger: TGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGA...CACCTTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | CAAGCACCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGAGTTCTATCCCAGCTaGTTTCTTCTCCAGAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: QAPKPLGTWRFQQSKANDEFYPS*FLLQKE Trigger: CTCCTTCTGGAGAAGAAAGCAGCTGGGATAGAACTC...ATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGGTGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CCA 90 bp | CCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGTCAGCTCAGCATCAGCATCCTaGCCATATTCATGGTGCTTA | + |
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Preference number: 4 (lower is better) Translates to: PKPLGTWRFQQSKANDVSSASAS*PYSWCL Trigger: TAAGCACCATGAATATGGCCAGGATGCTGATGCTGA...GCTGACATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CCA 90 bp | CAAGCACCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATTCAGCATCAGCATCCTaGCCATATTCATGGTGCTTA | + |
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Preference number: 4 (lower is better) Translates to: QAPKPLGTWRFQQSKANDSASAS*PYSWCL Trigger: TAAGCACCATGAATATGGCCAGGATGCTGATGCTGA...ATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGGTGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR GCA 90 bp | CCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGTCAGCTCATGGTGCTTAGTTTaGACAAAGATGCTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: PKPLGTWRFQQSKANDVSSWCLV*TKMLSS Trigger: TGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGA...GCTGACATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 90 bp | CCGAGGGTAGGGCCGAGAGCGGCGTCTGAACTGTGGGTAGAATGCTaGTGTTTTCCTGGACTGCCTGTGCTTTCCTTTGAGCCTGTGAAC | + |
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Preference number: 5 (lower is better) Translates to: PRVGPRAASELWVEC*CFPGLPVLSFEPVN Trigger: GTTCACAGGCTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAGTTCAGACGCCGCTCTCGGCCCTACCCTCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 90 bp | GTACCGAGGGTAGGGCCGAGAGCGGCGTCTGAACTGTGGGTAGAATaGTGCTGTTTTCCTGGACTGCCTGTGCTTTCCTTTGAGCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: VPRVGPRAASELWVE*CCFPGLPVLSFEPV Trigger: CACAGGCTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAGTTCAGACGCCGCTCTCGGCCCTACCCTCGGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 90 bp | TTCAGAGGGGCTCCGTGGGATTTCAGCATGGTTTGTGACTTCACCTaGCCTATGGTCTTTAGCTGGCCTGGTTGGGACTTCAGTTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: FRGAPWDFSMVCDFT*PMVFSWPGWDFSWA Trigger: AGCCCAACTGAAGTCCCAACCAGGCCAGCTAAAGACCATAGGGCAGGTGAAGTCACAAACCATGCTGAAATCCCACGGAGCCCCTCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CAA 90 bp | TTGAGGACTAGAGAGTGGTCAGCATCTTCAGGACATCACAGTCCACACAGGTCAGAATCACCCCTCCTCTaGGACAGTAGCACATCCCAG | + |
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Preference number: 5 (lower is better) Translates to: LRTREWSASSGHHSPHRSESPLL*DSSTSQ Trigger: CTGGGATGTGCTACTGTCCAAGAGGAGGGGTGATTC...TGACCTGTGTGGACTGTGATGTCCTGAAGATGCTGACCACTCTCTAGTCCTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CAA 90 bp | TTGAGGACTAGAGAGTGGTCAGCATCTTCAGGACATCACAGTCCACACAGGTCATGGCAGCTGGGATTTTaGTTGGGCAAGCTCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: LRTREWSASSGHHSPHRSWQLGF*LGKLIF Trigger: GAAGATGAGCTTGCCCAACAAAAATCCCAGCTGCCA...TGACCTGTGTGGACTGTGATGTCCTGAAGATGCTGACCACTCTCTAGTCCTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CAA 90 bp | GAAAGTCTCAGGAAGGAATGTGTGAGTGGGTCATGGCATCCGTGCAAGGTGTTGCTGGGTAGAAAGATTTaGTGTGATGAACACTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: ESLRKECVSGSWHPCKVLLGRKI*CDEHCP Trigger: AGGGCAGTGTTCATCACACAAAATCTTTCTACCCAG...CAACACCTTGCACGGATGCCATGACCCACTCACACATTCCTTCCTGAGACTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 90 bp | CCCATGTCAGCATCAGCATCCTGGCCATATTCATGGTGCTTAGTTTaGACAAAGATGCTTTCTTCAGGTGCCTCTTCCTGTTCTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: PMSASASWPYSWCLV*TKMLSSGASSCSSL Trigger: CAAAGAAGAACAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGAATATGGCCAGGATGCTGATGCTGACATGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS TCA 90 bp | CTTCACAAACTATGTCTTCCTTTAAACTTGTCAGTTCCTGTGAACTaGGTGCCCCTCCCATGTCAGCATCAGCATCCTGGCCATATTCAT | + |
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Preference number: 5 (lower is better) Translates to: LHKLCLPLNLSVPVN*VPLPCQHQHPGHIH Trigger: ATGAATATGGCCAGGATGCTGATGCTGACATGGGAGGGGCACTCAGTTCACAGGAACTGACAAGTTTAAAGGAAGACATAGTTTGTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CAA 90 bp | CCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGTCAGCTGGCAGCTGGGATTTTaGTTGGGCAAGCTCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: PKPLGTWRFQQSKANDVSWQLGF*LGKLIF Trigger: GAAGATGAGCTTGCCCAACAAAAATCCCAGCTGCCA...GCTGACATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 90 bp | GCCATATTCATGGTGCTTAGTTTGCACAAAGATGCTTTCTTCAGGTaGCTCTTCCTGTTCTTCTTTGTGCCCATAGAGGAACTGGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: AIFMVLSLHKDAFFR*LFLFFFVPIEELVF Trigger: AAAAACCAGTTCCTCTATGGGCACAAAGAAGAACAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGAATATGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS-3UTR CAA 90 bp | CCGAAACCACTAGGAACTTGGAGATTTCAACAGTCAAAAGCAAATGATGTCAGCCTGGGTAGAAAGATTTaGTGTGATGAACACTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: PKPLGTWRFQQSKANDVSLGRKI*CDEHCP Trigger: AGGGCAGTGTTCATCACACAAAATCTTTCTACCCAG...GCTGACATCATTTGCTTTTGACTGTTGAAATCTCCAAGTTCCTAGTGGTTTCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS CCA 72 bp | GTACCGAGGGTAGGGCCGAGAGCGGCGTCTGAACTGTaGGTAGAATGCTGCTGTTTTCCTGGACTGCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: VPRVGPRAASEL*VECCCFPGLPV Trigger: CACAGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAGTTCAGACGCCGCTCTCGGCCCTACCCTCGGTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 72 bp | GGACTGCCTGTGCTTTCCTTTGAGCCTGTGAACCTTTaGTGGCTGTTGACGCACTTGGGCCAGGTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: GLPVLSFEPVNL*WLLTHLGQVFS Trigger: GCTGAAGACCTGGCCCAAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 72 bp | GGGCCGAGAGCGGCGTCTGAACTGTGGGTAGAATGCTaGTGTTTTCCTGGACTGCCTGTGCTTTCCTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: GPRAASELWVEC*CFPGLPVLSFE Trigger: CTCAAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAGTTCAGACGCCGCTCTCGGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS CCA 72 bp | CTGCCTGTGCTTTCCTTTGAGCCTGTGAACCTTTGCTaGCTGTTGACGCACTTGGGCCAGGTCTTCAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: LPVLSFEPVNLC*LLTHLGQVFSQ Trigger: CTGGCTGAAGACCTGGCCCAAGTGCGTCAACAGCCAGCAAAGGTTCACAGGCTCAAAGGAAAGCACAGGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 72 bp | GTAGGGCCGAGAGCGGCGTCTGAACTGTGGGTAGAATaGTGCTGTTTTCCTGGACTGCCTGTGCTTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: VGPRAASELWVE*CCFPGLPVLSF Trigger: AAAGGAAAGCACAGGCAGTCCAGGAAAACAGCAGCATTCTACCCACAGTTCAGACGCCGCTCTCGGCCCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS CCA 72 bp | CACCCCTCCTCTTGGACAGTAGCACATCCCAGGACCTaGGTAGAAAGATTTTGTGTGATGAACACTGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: HPSSWTVAHPRT*VERFCVMNTAL Trigger: CAGGGCAGTGTTCATCACACAAAATCTTTCTACCCAGGTCCTGGGATGTGCTACTGTCCAAGAGGAGGGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS TCA 72 bp | CTATGTCTTCCTTTAAACTTGTCAGTTCCTGTGAACTaGGTGCCCCTCCCATGTCAGCATCAGCATCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LCLPLNLSVPVN*VPLPCQHQHPG Trigger: GCCAGGATGCTGATGCTGACATGGGAGGGGCACTCAGTTCACAGGAACTGACAAGTTTAAAGGAAGACATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS CCA 72 bp | GAACTGAGTGCCCCTCCCATGTCAGCATCAGCATCCTaGCCATATTCATGGTGCTTAGTTTGCACAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: ELSAPPMSASAS*PYSWCLVCTKM Trigger: CATCTTTGTGCAAACTAAGCACCATGAATATGGCCAGGATGCTGATGCTGACATGGGAGGGGCACTCAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS CAA 72 bp | AGCATCAGCATCCTGGCCATATTCATGGTGCTTAGTTaGCACAAAGATGCTTTCTTCAGGTGCCTCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SISILAIFMVLS*HKDAFFRCLFL Trigger: CAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGAATATGGCCAGGATGCTGATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS CAA 90 bp | TCCCATGTCAGCATCAGCATCCTGGCCATATTCATGGTGCTTAGTTaGCACAAAGATGCTTTCTTCAGGTGCCTCTTCCTGTTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SHVSISILAIFMVLS*HKDAFFRCLFLFFF Trigger: AAAGAAGAACAGGAAGAGGCACCTGAAGAAAGCATCTTTGTGCAAACTAAGCACCATGAATATGGCCAGGATGCTGATGCTGACATGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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| CDS GCA 72 bp | CAGGACCTGGGTAGAAAGATTTTGTGTGATGAACACTaGCCTGTAGCTGCTCTTGAAATTGCACAAAGTACC | + |
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Preference number: 6 (lower is better) Translates to: QDLGRKILCDEH*PVAALEIAQST Trigger: GGTACTTTGTGCAATTTCAAGAGCAGCTACAGGGCAGTGTTCATCACACAAAATCTTTCTACCCAGGTCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017147.8 ENSMUST00000109370.2 |
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