Pregenerated sensors for SVS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040132Ensembl transcript IDs: ENSMUST00000044953.3, ENSMUST00000109374.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GTTCTCAGTCAACAAGTACAAGTGATGCGGAAAGTTATCTTTTTATaGGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCCTAC | + |
|
Preference number: 2 (lower is better) Translates to: VLSQQVQVMRKVIFL*ESKCLRKLQGQKSY Trigger: GTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTACTTGTTGACTGAGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR-3UTR CAA 90 bp | GGCCAGAAGTCCTACAGAAAAGCAAATGTGAGTAGAGGGTTGTCCATGAACCAAGAAGGTATCATAGACTaGACTCTGGTGAGGCGAGTC | + |
|
Preference number: 3 (lower is better) Translates to: GQKSYRKANVSRGLSMNQEGIID*TLVRRV Trigger: GACTCGCCTCACCAGAGTCAAGTCTATGATACCTTC...TTGGTTCATGGACAACCCTCTACTCACATTTGCTTTTCTGTAGGACTTCTGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR GCA 72 bp | TCCCAATGCCATACAACTGTCTCTTCCTTTTGGAACTaGCCATTGGGAATATTCCCAAATCCAGACACAGTT | + |
|
Preference number: 3 (lower is better) Translates to: SQCHTTVSSFWN*PLGIFPNPDTV Trigger: AACTGTGTCTGGATTTGGGAATATTCCCAATGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR TCA 72 bp | TGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTaGGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAG | + |
|
Preference number: 3 (lower is better) Translates to: CGKLSFYWKASV*GSSRARSPTEK Trigger: CTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR-3UTR CAA 90 bp | AGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCATCCTTGATATTGATCTaGGTCTTTAGTTGGTCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: SDAESYLFIGKQVFEEAPSLILI*VFSWSV Trigger: CACTGACCAACTAAAGACCAAGATCAATATCAAGGA...TGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR TCA 72 bp | GTTCTCAGGAACCAGTTCTCAGTCAACAAGTACAAGTaGTGCGGAAAGTTATCTTTTTATTGGAAAGCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: VLRNQFSVNKYK*CGKLSFYWKAS Trigger: ACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTACTTGTTGACTGAGAACTGGTTCCTGAGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | GGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAGCAAAAAGCATAAATCCCTCTaGGGAGCTGCTCTGGAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: GKQVFEEAPGPEVLQKSKKHKSL*GAALEV Trigger: CACTTCCAGAGCAGCTCCTCAGAGGGATTTATGCTT...TTTGCTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | TTGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAGCAAATGTGAGTAGAGGGTCCTTTATAGGATTGTaGGCGCTCTTGTCCATATTG | + |
|
Preference number: 4 (lower is better) Translates to: LRKLQGQKSYRKANVSRGSFIGL*ALLSIL Trigger: CAATATGGACAAGAGCGCTCACAATCCTATAAAGGA...CCCTCTACTCACATTTGCTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR GCA 90 bp | CAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAGCAAATGTGAGAAGGCTTTCTTCAGCTaGTTCGTCACTTCCTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: QVFEEAPGPEVLQKSKCEKAFFS*FVTSSF Trigger: AAAGGAGGAAGTGACGAAGCAGCTGAAGAAAGCCTT...CTCACATTTGCTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | TATTGCTGTTTTTCCCAATGCCATACAACTGTCTCTTCCTTTTGGAACTGCCCACTGAGACGGCCTTTCTaGCCAAGCATAAATCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: YCCFSQCHTTVSSFWNCPLRRPF*PSINPS Trigger: AGAGGGATTTATGCTTGGTCAGAAAGGCCGTCTCAG...TGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGAAAAACAGCAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | TATTGCTGTTTTTCCCAATGCCATACAACTGTCTCTTCCTTTTGGAACTGCCCAAAAGTGCGGCCCCTTTaGCACTTGTATGCTCTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: YCCFSQCHTTVSSFWNCPKVRPL*HLYALV Trigger: CACAAGAGCATACAAGTGTCAAAGGGGCCGCACTTT...TGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGAAAAACAGCAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR CAA 72 bp | TGCCATACAACTGTCTCTTCCTTTTGGAACTGCCCATaGGGAATATTCCCAAATCCAGACACAGTTCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: CHTTVSSFWNCP*GIFPNPDTVLR Trigger: CCTGAGAACTGTGTCTGGATTTGGGAATATTCCCAATGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | AAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGGGCGTTGTGATTGCATaGAAAGGCTTTCTTCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KVIFLLESKCLRKLQGQKGVVIA*KGFLQL Trigger: CAGCTGAAGAAAGCCTTTTCATGCAATCACAACGCC...CTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | AGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCACCTCCAGATTTCAACTaGCCACCGGATTTCAGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SDAESYLFIGKQVFEEAPPPDFN*PPDFSC Trigger: ACAGCTGAAATCCGGTGGTCAGTTGAAATCTGGAGG...TGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CCA 90 bp | TGCTGTTTTTCCCAATGCCATACAACTGTCTCTTCCTTTTGGAACTGCCCATTGTTATTTGGGACACACTaGACTTCACTTGTCCAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: CCFSQCHTTVSSFWNCPLLFGTH*TSLVQR Trigger: CCTTTGGACAAGTGAAGTCCAGTGTGTCCCAAATAA...CAATGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGAAAAACAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CCA 90 bp | GGCCAGAAGTCCTACAGAAAAGCAAATGTGAGTAGAGGGTTGTCCATGAACCAATTTAGTTGGGCACCTTaGGATTTTAGTTGGCTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: GQKSYRKANVSRGLSMNQFSWAP*DFSWLK Trigger: TTTCAGCCAACTAAAATCCCAAGGTGCCCAACTAAA...TTGGTTCATGGACAACCCTCTACTCACATTTGCTTTTCTGTAGGACTTCTGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR CAA 72 bp | CAACAAGTACAAGTGATGCGGAAAGTTATCTTTTTATaGGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: QQVQVMRKVIFL*ESKCLRKLQGQ Trigger: CTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTACTTGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR CAA 72 bp | CTGTTTTTCCCAATGCCATACAACTGTCTCTTCCTTTaGGAACTGCCCATTGGGAATATTCCCAAATCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LFFPMPYNCLFL*ELPIGNIPKSR Trigger: TCTGGATTTGGGAATATTCCCAATGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGAAAAACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CCA 90 bp | CAAGTACAAGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGGAGCTGCTCTGGAAGTaGCCTTTTGTAGCCCCATAT | + |
|
Preference number: 4 (lower is better) Translates to: QVQVMRKVIFLLESKCLRELLWK*PFVAPY Trigger: ATATGGGGCTACAAAAGGCCACTTCCAGAGCAGCTC...CCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTACTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| 3UTR CAA 72 bp | ATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTaGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: MRKVIFLLESKC*RKLQGQKSYRK Trigger: TTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | GTACAAGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGTTGTCCAACCACAGCTaGCTGTCTTTCCAGAATGAG | + |
|
Preference number: 4 (lower is better) Translates to: VQVMRKVIFLLESKCLRKLSNHS*LSFQNE Trigger: CTCATTCTGGAAAGACAGTCAGCTGTGGTTGGACAA...CTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | GTACAAGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGACTTGTATGCTCTTGTaGAACACGTGTCTGGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: VQVMRKVIFLLESKCLRKTCMLL*NTCLGH Trigger: ATGACCCAGACACGTGTTTCACAAGAGCATACAAGT...CTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CCA 90 bp | AGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCTCTGTTTTCATCTGTTaGGTAGACTTCTGTTGTACT | + |
|
Preference number: 4 (lower is better) Translates to: SYLFIGKQVFEEAPGPEVSVFIC*VDFCCT Trigger: AGTACAACAGAAGTCTACCCAACAGATGAAAACAGA...GACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR TCA 90 bp | GTACAAGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGGGGATTTTAGTTGGCTaGAAGAGTTCAGTTGACCTT | + |
|
Preference number: 4 (lower is better) Translates to: VQVMRKVIFLLESKCLRKGILVG*KSSVDL Trigger: AAGGTCAACTGAACTCTTTCAGCCAACTAAAATCCC...CTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR GCA 90 bp | GTACAAGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCCTTTGACACTTGTATaGTCTTGTGAAACACGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: VQVMRKVIFLLESKCLRKPLTLV*SCETRV Trigger: GACACGTGTTTCACAAGAGCATACAAGTGTCAAAGG...CTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CCA 90 bp | TATTGCTGTTTTTCCCAATGCCATACAACTGTCTCTTCCTTTTGGAACTGCCCATTTATTTGGGATTCTTaGGATTTCACTTGTCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: YCCFSQCHTTVSSFWNCPFIWDS*DFTCPK Trigger: CTTTGGACAAGTGAAATCCCAAGAATCCCAAATAAA...TGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGAAAAACAGCAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS CCA 90 bp | AGTGCGGCCCCTTTGACACTTGTATGCTCTTGTGAAACACGTGTCTaGGTCATGTCACCACCACCCTGGCCATACACCCGGCGTTGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: SAAPLTLVCSCETRV*VMSPPPWPYTRRCD Trigger: ATCACAACGCCGGGTGTATGGCCAGGGTGGTGGTGACATGACCCAGACACGTGTTTCACAAGAGCATACAAGTGTCAAAGGGGCCGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 90 bp | GATCCCGAAACTGAGACGGCCTTTCTGACCAAGCATAAATCCCTCTaGGGAGCTGCTCTGGAAGTGGCCTTTTGTAGCCCCATATTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: DPETETAFLTKHKSL*GAALEVAFCSPILS Trigger: GGACAATATGGGGCTACAAAAGGCCACTTCCAGAGCAGCTCCTCAGAGGGATTTATGCTTGGTCAGAAAGGCCGTCTCAGTTTCGGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 90 bp | GCTCTGGAAGTGGCCTTTTGTAGCCCCATATTGTCCAACCACAGCTaGCTGTCTTTCCAGAATGAGGAGCAGAGAAAGGACGAAGACAGA | + |
|
Preference number: 5 (lower is better) Translates to: ALEVAFCSPILSNHS*LSFQNEEQRKDEDR Trigger: TCTGTCTTCGTCCTTTCTCTGCTCCTCATTCTGGAAAGACAGTCAGCTGTGGTTGGACAATATGGGGCTACAAAAGGCCACTTCCAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS-3UTR CAA 90 bp | GGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAGCAAATTCTTGGGATTTCACTaGTCCAAAGGCTGGTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GKQVFEEAPGPEVLQKSKFLGFH*SKGWSS Trigger: GGAGGACCAGCCTTTGGACAAGTGAAATCCCAAGAA...TTTGCTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS TCA 90 bp | ATTTCAGTTGGGATACTTGTCCATTACGACAAAGTGCGGCCCCTTTaGCACTTGTATGCTCTTGTGAAACACGTGTCTGGGTCATGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: ISVGILVHYDKVRPL*HLYALVKHVSGSCH Trigger: GTGACATGACCCAGACACGTGTTTCACAAGAGCATACAAGTGTCAAAGGGGCCGCACTTTGTCGTAATGGACAAGTATCCCAACTGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS-3UTR CAA 90 bp | TTGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAGCAAATGTGAGTAGAGGGTCCTCCAGATTTCAGTaGTCCACTGGATTTCAATTG | + |
|
Preference number: 5 (lower is better) Translates to: LRKLQGQKSYRKANVSRGSSRFQ*STGFQL Trigger: CAATTGAAATCCAGTGGACAACTGAAATCTGGAGGA...CCCTCTACTCACATTTGCTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS CCA 90 bp | ACTTCACTTGTCCAAAGGCTGATCCTCCAGATTTCAGCTGTCCACTaGATTTCACTTGGCCATAGGATTTTATTTGGGATTCTTGGGATT | + |
|
Preference number: 5 (lower is better) Translates to: TSLVQRLILQISAVH*ISLGHRILFGILGI Trigger: AATCCCAAGAATCCCAAATAAAATCCTATGGCCAAGTGAAATCCAGTGGACAGCTGAAATCTGGAGGATCAGCCTTTGGACAAGTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CCA 90 bp | CGCTGTTGTCCGAATTGGGATAAGTCTTCCTCTGTTTTCATCTGTTaGGTAGACTTCTGTTGTACTGAGAGGTCATCGTCACTAAATTGT | + |
|
Preference number: 5 (lower is better) Translates to: RCCPNWDKSSSVFIC*VDFCCTERSSSLNC Trigger: ACAATTTAGTGACGATGACCTCTCAGTACAACAGAAGTCTACCCAACAGATGAAAACAGAGGAAGACTTATCCCAATTCGGACAACAGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS-3UTR CAA 90 bp | AGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCACCATAGGATTTTACTaGGGATCCACCGGATTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: SYLFIGKQVFEEAPGPEVTIGFY*GSTGFQ Trigger: CTGAAATCCGGTGGATCCCAAGTAAAATCCTATGGT...GACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CAA 90 bp | TGCTGTTTTTCCCAATGCCATACAACTGTCTCTTCCTTTTGGAACTGCCCATTGGCTAAAGGAGGACTGTaGTTGAGATTTTTGTTGACC | + |
|
Preference number: 5 (lower is better) Translates to: CCFSQCHTTVSSFWNCPLAKGGL*LRFLLT Trigger: GGTCAACAAAAATCTCAACAACAGTCCTCCTTTAGC...CAATGGGCAGTTCCAAAAGGAAGAGACAGTTGTATGGCATTGGGAAAAACAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CAA 90 bp | GGAAAGCAAGTGTTTGAGGAAGCTCCAGGGCCAGAAGTCCTACAGAAAAGCAAATTTATGCTGAGTTTGTaGAGAAAAACCTTTGAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: GKQVFEEAPGPEVLQKSKFMLSL*RKTFEG Trigger: TCCCTCAAAGGTTTTTCTCAACAAACTCAGCATAAA...TTTGCTTTTCTGTAGGACTTCTGGCCCTGGAGCTTCCTCAAACACTTGCTTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CAA 90 bp | AGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCAACTTTGAGATTTTACTaGGCTAAAGGAGGACTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SDAESYLFIGKQVFEEAPTLRFY*AKGGLL Trigger: CAACAGTCCTCCTTTAGCCAAGTAAAATCTCAAAGT...TGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CAA 90 bp | GTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCAGTCCTTTATGCTGAGTTaGTTGAGAAAAACCTTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: VMRKVIFLLESKCLRKLQSFMLS*LRKTFE Trigger: CTCAAAGGTTTTTCTCAACAAACTCAGCATAAAGGA...CTGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CAA 90 bp | AGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGCTCCAAAAGGAGGACTGTTGTaGAGATTTTTGTTGACCATA | + |
|
Preference number: 5 (lower is better) Translates to: SDAESYLFIGKQVFEEAPKGGLL*RFLLTI Trigger: TATGGTCAACAAAAATCTCAACAACAGTCCTCCTTT...TGGAGCTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS-3UTR CAA 90 bp | GTACAAGTGATGCGGAAAGTTATCTTTTTATTGGAAAGCAAGTGTTTGAGGAAGTTTTATTTGGGATTCTaGGGATTTCAGTTGGGATAC | + |
|
Preference number: 5 (lower is better) Translates to: VQVMRKVIFLLESKCLRKFYLGF*GFQLGY Trigger: GTATCCCAACTGAAATCCCAAGAATCCCAAATAAAA...CTTCCTCAAACACTTGCTTTCCAATAAAAAGATAACTTTCCGCATCACTTGTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044953.3 |
||
| CDS TCA 72 bp | ACTGAGACGGCCTTTCTGACCAAGCATAAATCCCTCTaGGGAGCTGCTCTGGAAGTGGCCTTTTGTAGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: TETAFLTKHKSL*GAALEVAFCSP Trigger: GGGGCTACAAAAGGCCACTTCCAGAGCAGCTCCTCAGAGGGATTTATGCTTGGTCAGAAAGGCCGTCTCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CCA 72 bp | CCTTTGACACTTGTATGCTCTTGTGAAACACGTGTCTaGGTCATGTCACCACCACCCTGGCCATACACCCGG | + |
|
Preference number: 6 (lower is better) Translates to: PLTLVCSCETRV*VMSPPPWPYTR Trigger: CCGGGTGTATGGCCAGGGTGGTGGTGACATGACCCAGACACGTGTTTCACAAGAGCATACAAGTGTCAAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 72 bp | ACAAAGTGCGGCCCCTTTGACACTTGTATGCTCTTGTaGAACACGTGTCTGGGTCATGTCACCACCACCCTG | + |
|
Preference number: 6 (lower is better) Translates to: TKCGPFDTCMLL*NTCLGHVTTTL Trigger: CAGGGTGGTGGTGACATGACCCAGACACGTGTTTCACAAGAGCATACAAGTGTCAAAGGGGCCGCACTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS GCA 72 bp | TCACCACCACCCTGGCCATACACCCGGCGTTGTGATTaGATGAAAAGGCTTTCTTCAGCTGCTTCGTCACTT | + |
|
Preference number: 6 (lower is better) Translates to: SPPPWPYTRRCD*MKRLSSAASSL Trigger: AAGTGACGAAGCAGCTGAAGAAAGCCTTTTCATGCAATCACAACGCCGGGTGTATGGCCAGGGTGGTGGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 72 bp | GTGGCCTTTTGTAGCCCCATATTGTCCAACCACAGCTaGCTGTCTTTCCAGAATGAGGAGCAGAGAAAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: VAFCSPILSNHS*LSFQNEEQRKD Trigger: GTCCTTTCTCTGCTCCTCATTCTGGAAAGACAGTCAGCTGTGGTTGGACAATATGGGGCTACAAAAGGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 72 bp | GGGATACTTGTCCATTACGACAAAGTGCGGCCCCTTTaGCACTTGTATGCTCTTGTGAAACACGTGTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: GILVHYDKVRPL*HLYALVKHVSG Trigger: CCCAGACACGTGTTTCACAAGAGCATACAAGTGTCAAAGGGGCCGCACTTTGTCGTAATGGACAAGTATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CCA 72 bp | GAGCGCTCTTGTCCATATTGCCGCTGTTGTCCGAATTaGGATAAGTCTTCCTCTGTTTTCATCTGTTGGGTA | + |
|
Preference number: 6 (lower is better) Translates to: ERSCPYCRCCPN*DKSSSVFICWV Trigger: TACCCAACAGATGAAAACAGAGGAAGACTTATCCCAATTCGGACAACAGCGGCAATATGGACAAGAGCGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 72 bp | GCCATAGGATTTTATTTGGGATTCTTGGGATTTCAGTaGGGATACTTGTCCATTACGACAAAGTGCGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: AIGFYLGFLGFQ*GYLSITTKCGP Trigger: GGGGCCGCACTTTGTCGTAATGGACAAGTATCCCAACTGAAATCCCAAGAATCCCAAATAAAATCCTATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 90 bp | CTGTCCACTGGATTTCACTTGGCCATAGGATTTTATTTGGGATTCTaGGGATTTCAGTTGGGATACTTGTCCATTACGACAAAGTGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: LSTGFHLAIGFYLGF*GFQLGYLSITTKCG Trigger: GCCGCACTTTGTCGTAATGGACAAGTATCCCAACTGAAATCCCAAGAATCCCAAATAAAATCCTATGGCCAAGTGAAATCCAGTGGACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CCA 72 bp | GTCCAAAGGCTGATCCTCCAGATTTCAGCTGTCCACTaGATTTCACTTGGCCATAGGATTTTATTTGGGATT | + |
|
Preference number: 6 (lower is better) Translates to: VQRLILQISAVH*ISLGHRILFGI Trigger: AATCCCAAATAAAATCCTATGGCCAAGTGAAATCCAGTGGACAGCTGAAATCTGGAGGATCAGCCTTTGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 90 bp | TTTCACTTGGCCATAGGATTTTATTTGGGATTCTTGGGATTTCAGTaGGGATACTTGTCCATTACGACAAAGTGCGGCCCCTTTGACACT | + |
|
Preference number: 6 (lower is better) Translates to: FHLAIGFYLGFLGFQ*GYLSITTKCGPFDT Trigger: AGTGTCAAAGGGGCCGCACTTTGTCGTAATGGACAAGTATCCCAACTGAAATCCCAAGAATCCCAAATAAAATCCTATGGCCAAGTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 72 bp | CTTTCTGTATTGCTCAAGATATCCTTTATAGGATTGTaGGCGCTCTTGTCCATATTGCCGCTGTTGTCCGAA | + |
|
Preference number: 6 (lower is better) Translates to: LSVLLKISFIGL*ALLSILPLLSE Trigger: TTCGGACAACAGCGGCAATATGGACAAGAGCGCTCACAATCCTATAAAGGATATCTTGAGCAATACAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CCA 72 bp | ATTTCAGCTGTCCATAGGATTTTATTTGGGACACACTaGACTTCACTTGTCCAAAGGCTGATCCTCCAGATT | + |
|
Preference number: 6 (lower is better) Translates to: ISAVHRILFGTH*TSLVQRLILQI Trigger: AATCTGGAGGATCAGCCTTTGGACAAGTGAAGTCCAGTGTGTCCCAAATAAAATCCTATGGACAGCTGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 72 bp | TTTTATTTGGGATTCTTGGGATTTCAGTTGGGATACTaGTCCATTACGACAAAGTGCGGCCCCTTTGACACT | + |
|
Preference number: 6 (lower is better) Translates to: FYLGFLGFQLGY*SITTKCGPFDT Trigger: AGTGTCAAAGGGGCCGCACTTTGTCGTAATGGACAAGTATCCCAACTGAAATCCCAAGAATCCCAAATAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 72 bp | CTGTCCACTGGATTTCACTTGGCCATAGGATTTTATTaGGGATTCTTGGGATTTCAGTTGGGATACTTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: LSTGFHLAIGFY*GFLGFQLGYLS Trigger: GGACAAGTATCCCAACTGAAATCCCAAGAATCCCAAATAAAATCCTATGGCCAAGTGAAATCCAGTGGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 90 bp | CACACTGGACTTCACTTGTCCAAAGGCCGATCCTCCAGATTTCAGTaGTCCACTGGATTTCAATTGTCCATAAGATTTTATTTGGGATTC | + |
|
Preference number: 6 (lower is better) Translates to: HTGLHLSKGRSSRFQ*STGFQLSIRFYLGF Trigger: GAATCCCAAATAAAATCTTATGGACAATTGAAATCCAGTGGACAACTGAAATCTGGAGGATCGGCCTTTGGACAAGTGAAGTCCAGTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS TCA 72 bp | AGGATTTTAGTTGGGCACCTTGGGATTTTAGTTGGCTaGAAGAGTTCAGTTGACCTTCTTCACCATAGGATT | + |
|
Preference number: 6 (lower is better) Translates to: RILVGHLGILVG*KSSVDLLHHRI Trigger: AATCCTATGGTGAAGAAGGTCAACTGAACTCTTTCAGCCAACTAAAATCCCAAGGTGCCCAACTAAAATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 90 bp | AGATTTCAGCTGTCCACTGGATTTCACTTGGCCATAGGATTTTATTaGGGATTCTTGGGATTTCAGTTGGGATACTTGTCCATTACGACA | + |
|
Preference number: 6 (lower is better) Translates to: RFQLSTGFHLAIGFY*GFLGFQLGYLSITT Trigger: TGTCGTAATGGACAAGTATCCCAACTGAAATCCCAAGAATCCCAAATAAAATCCTATGGCCAAGTGAAATCCAGTGGACAGCTGAAATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 90 bp | TCCAAAGGCCGATCCTCCAGATTTCAGTTGTCCACTGGATTTCAATaGTCCATAAGATTTTATTTGGGATTCTTGGGATTTCACTTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: SKGRSSRFQLSTGFQ*SIRFYLGFLGFHLS Trigger: GGACAAGTGAAATCCCAAGAATCCCAAATAAAATCTTATGGACAATTGAAATCCAGTGGACAACTGAAATCTGGAGGATCGGCCTTTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 90 bp | TTGTCCACTGGATTTCAATTGTCCATAAGATTTTATTTGGGATTCTaGGGATTTCACTTGTCCAAAGGCTGGTCCTCCAGATTTCAACTG | + |
|
Preference number: 6 (lower is better) Translates to: LSTGFQLSIRFYLGF*GFHLSKGWSSRFQL Trigger: CAGTTGAAATCTGGAGGACCAGCCTTTGGACAAGTGAAATCCCAAGAATCCCAAATAAAATCTTATGGACAATTGAAATCCAGTGGACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 72 bp | CTTCACTTGTCCAAAGGCCGATCCTCCAGATTTCAGTaGTCCACTGGATTTCAATTGTCCATAAGATTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: LHLSKGRSSRFQ*STGFQLSIRFY Trigger: ATAAAATCTTATGGACAATTGAAATCCAGTGGACAACTGAAATCTGGAGGATCGGCCTTTGGACAAGTGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 72 bp | CATACCTTCATCCATGGCAAATCCTTTATGCTGAGTTaGTTGAGAAAAACCTTTGAGGGATTTTTGTTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: HTFIHGKSFMLS*LRKTFEGFLLA Trigger: GGCCAACAAAAATCCCTCAAAGGTTTTTCTCAACAAACTCAGCATAAAGGATTTGCCATGGATGAAGGTATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||
| CDS CAA 72 bp | CGATCCTCCAGATTTCAGTTGTCCACTGGATTTCAATaGTCCATAAGATTTTATTTGGGATTCTTGGGATTT | + |
|
Preference number: 6 (lower is better) Translates to: RSSRFQLSTGFQ*SIRFYLGFLGF Trigger: AAATCCCAAGAATCCCAAATAAAATCTTATGGACAATTGAAATCCAGTGGACAACTGAAATCTGGAGGATCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044953.3 ENSMUST00000109374.2 |
||