Pregenerated sensors for SVOPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029830Ensembl transcript IDs: ENSMUST00000096040.11, ENSMUST00000172585.9
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGCGGTTCATCTTGGCAATGCTCTCTAGGGTGTTCAGTGCAGCCTaGGTGTTCCCAGTGGAGACGTTGAAGCGAGCAGATTCAGGGATA | + |
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Preference number: 1 (lower is better) Translates to: ERFILAMLSRVFSAA*VFPVETLKRADSGI Trigger: TATCCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGAACACCCAGGCTGCACTGAACACCCTAGAGAGCATTGCCAAGATGAACCGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR GCA 90 bp | TGGGTAGACCTCAGCAGTGTAAATGTAGATGGTGTTGAAGTTTGCTaGCACCAGGGCCCTCAGCATGAAGAGGAAGCCAATGAGGCCTGC | + |
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Preference number: 1 (lower is better) Translates to: WVDLSSVNVDGVEVC*HQGPQHEEEANEAC Trigger: GCAGGCCTCATTGGCTTCCTCTTCATGCTGAGGGCCCTGGTGGCAGCAAACTTCAACACCATCTACATTTACACTGCTGAGGTCTACCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR GCA 90 bp | GGTTGGGTAGACCTCAGCAGTGTAAATGTAGATGGTGTTGAAGTTTaGTGCCACCAGGGCCCTCAGCATGAAGAGGAAGCCAATGAGGCC | + |
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Preference number: 1 (lower is better) Translates to: GWVDLSSVNVDGVEV*CHQGPQHEEEANEA Trigger: GGCCTCATTGGCTTCCTCTTCATGCTGAGGGCCCTGGTGGCAGCAAACTTCAACACCATCTACATTTACACTGCTGAGGTCTACCCAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR CCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTaGTTTGGAGGTAGGCTTTTGATGTTTGTAGACAAGATCTCATGT | + |
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Preference number: 1 (lower is better) Translates to: LHPYLLLAPFNLRVY*FGGRLLMFVDKISC Trigger: ACATGAGATCTTGTCTACAAACATCAAAAGCCTACCTCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR-3UTR TCA 90 bp | TCAGACCCTCCCCTGAGTCCCCTGTGGTCTCCACCACCTCCGGTTCTGACTCCGGCTGTCCCTCTGGCATaGCTGAGCGGTTCATCTTGG | + |
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Preference number: 2 (lower is better) Translates to: SDPPLSPLWSPPPPVLTPAVPLA*LSGSSW Trigger: CCAAGATGAACCGCTCAGTCATGCCAGAGGGACAGC...CGGAGTCAGAACCGGAGGTGGTGGAGACCACAGGGGACTCAGGGGAGGGTCTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CCA 90 bp | TCAGACCCTCCCCTGAGTCCCCTGTGGTCTCCACCACCTCCGGTTCTGACTCCGCTCTTTTCTCCAGGATaGGCTCCACCAGCTGTCCCT | + |
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Preference number: 2 (lower is better) Translates to: SDPPLSPLWSPPPPVLTPLFSPG*APPAVP Trigger: AGGGACAGCTGGTGGAGCCCATCCTGGAGAAAAGAG...CGGAGTCAGAACCGGAGGTGGTGGAGACCACAGGGGACTCAGGGGAGGGTCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR CAA 90 bp | ATGGGCTCCACCAGCTGTCCCTCTGGCATGACTGAGCGGTTCATCTaGGCAATGCTCTCTAGGGTGTTCAGTGCAGCCTGGGTGTTCCCA | + |
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Preference number: 2 (lower is better) Translates to: MGSTSCPSGMTERFI*AMLSRVFSAAWVFP Trigger: TGGGAACACCCAGGCTGCACTGAACACCCTAGAGAGCATTGCCAAGATGAACCGCTCAGTCATGCCAGAGGGACAGCTGGTGGAGCCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR TCA 90 bp | CTGACTCCGACTTTGAACCGCAGACCAGATCCCGCTCGAGCAACTCAGCGCTGGTCCCTCTGGCATGACTaGGCGGTTCATCTTGGCAAT | + |
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Preference number: 2 (lower is better) Translates to: LTPTLNRRPDPARATQRWSLWHD*AVHLGN Trigger: ATTGCCAAGATGAACCGCTCAGTCATGCCAGAGGGA...CCAGCGCTGAGTTGCTCGAGCGGGATCTGGTCTGCGGTTCAAAGTCGGAGTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR CAA 90 bp | GTGCATCCCATGGTGATCGACAGGCTCAGCCGTCTGCCCAGGAAATaGATGCCCAGGATGTTTAAAGGGTTCAAAGCGATTTCCCCGAGG | + |
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Preference number: 2 (lower is better) Translates to: VHPMVIDRLSRLPRK*MPRMFKGFKAISPR Trigger: CCTCGGGGAAATCGCTTTGAACCCTTTAAACATCCTGGGCATCAATTTCCTGGGCAGACGGCTGAGCCTGTCGATCACCATGGGATGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR CAA 90 bp | CTCTCTAGGGTGTTCAGTGCAGCCTGGGTGTTCCCAGTGGAGACGTaGAAGCGAGCAGATTCAGGGATAAACTTGAAGGCCATGATGAGG | + |
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Preference number: 2 (lower is better) Translates to: LSRVFSAAWVFPVET*KRADSGINLKAMMR Trigger: CCTCATCATGGCCTTCAAGTTTATCCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGAACACCCAGGCTGCACTGAACACCCTAGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CCA 90 bp | TCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAACCCCACTGCATTCTTaGTGTGTGCCTTCATTGCCT | + |
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Preference number: 2 (lower is better) Translates to: SGGRGRWISEFEALLVYKTPLHS*CVPSLP Trigger: AGGCAATGAAGGCACACACCAAGAATGCAGTGGGGT...TTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR-3UTR TCA 90 bp | TTGATGCCCAGGATGTTTAAAGGGTTCAAAGCGATTTCCCCGAGGGTGCTGATGCAGCGCTGGCCAGGATaGCCCCATAATAGGCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: LMPRMFKGFKAISPRVLMQRWPG*PHNRQK Trigger: CTTTTGCCTATTATGGGGTCATCCTGGCCAGCGCTG...CATCAGCACCCTCGGGGAAATCGCTTTGAACCCTTTAAACATCCTGGGCATCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR TCA 90 bp | TCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGTTGTTGATACCAAATaGGAAGTGTATCCTCCACCC | + |
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Preference number: 2 (lower is better) Translates to: SGGRGRWISEFEALLVYKVVDTK*EVYPPP Trigger: GGGTGGAGGATACACTTCTCATTTGGTATCAACAAC...TTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR-3UTR GCA 90 bp | GTAAATGCAGAAATAGCGCACACAACACAGACAGATGAGAAAAGACACAGGGCTCTACCATTGCTCCAATaGGACACAGGGAGCCGCTGG | + |
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Preference number: 2 (lower is better) Translates to: VNAEIAHTTQTDEKRHRALPLLQ*DTGSRW Trigger: CCAGCGGCTCCCTGTGTCGCATTGGAGCAATGGTAG...AGCCCTGTGTCTTTTCTCATCTGTCTGTGTTGTGTGCGCTATTTCTGCATTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGAAGGATATTGAACTCCTaGTCATCCTGCCCCCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGRILNS*SSCPLN Trigger: GTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCT...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR-3UTR CCA 90 bp | CATTTAATTTGCTGCAAAGCGCGTCCTTTGGTCTCAATGGGAAGAGTAAATGCAGTGTTCAGTGCAGCCTaGGTGTTCCCAGTGGAGACG | + |
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Preference number: 2 (lower is better) Translates to: HLICCKARPLVSMGRVNAVFSAA*VFPVET Trigger: CGTCTCCACTGGGAACACCCAGGCTGCACTGAACAC...TGCATTTACTCTTCCCATTGAGACCAAAGGACGCGCTTTGCAGCAAATTAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR GCA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGTGCATTCTTGGTGTGTaGCTTCATTGCCTTAATATA | + |
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Preference number: 2 (lower is better) Translates to: EEDIELLVILPPQPVYAGCILGV*LHCLNI Trigger: TATATTAAGGCAATGAAGGCACACACCAAGAATGCA...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR-3UTR TCA 90 bp | CATTTAATTTGCTGCAAAGCGCGTCCTTTGGTCTCAATGGGAAGAGTAAATGCAGTCTGCCCAGGAAATTaGTGCCCAGGATGTTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: HLICCKARPLVSMGRVNAVCPGN*CPGCLK Trigger: CTTTAAACATCCTGGGCATCAATTTCCTGGGCAGAC...TGCATTTACTCTTCCCATTGAGACCAAAGGACGCGCTTTGCAGCAAATTAAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR GCA 90 bp | TGTATCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGGGTGTGTGCCTTCATTaGCTTAATATAACTTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: CILHPYLLLAPFNLRVYWGVCLH*LNITCF Trigger: AAAGCAAGTTATATTAAGGCAATGAAGGCACACACC...CCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR TCA 72 bp | CCAGATCCCGCTCGAGCAACTCAGCGCTGGCCAGGATaGCCCCATAATAGGCAAAAGAAATTCCCAGCCATA | + |
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Preference number: 3 (lower is better) Translates to: PDPARATQRWPG*PHNRQKKFPAI Trigger: TATGGCTGGGAATTTCTTTTGCCTATTATGGGGTCATCCTGGCCAGCGCTGAGTTGCTCGAGCGGGATCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CAA 90 bp | GCCCTCAGCATGAAGAGGAAGCCAATGAGGCCTGCACTTGAAGTGCAGATATTGTTCCCAGTGGAGACGTaGAAGCGAGCAGATTCAGGG | + |
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Preference number: 3 (lower is better) Translates to: ALSMKRKPMRPALEVQILFPVET*KRADSG Trigger: CCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGAA...CAATATCTGCACTTCAAGTGCAGGCCTCATTGGCTTCCTCTTCATGCTGAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR GCA 72 bp | GAGGGTGCTGATGATCATGGTCCTGTAGTCAGAGGGTaGAAATATGTGGCAATAGCAGGGACTCAGACCCTC | + |
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Preference number: 3 (lower is better) Translates to: EGADDHGPVVRG*KYVAIAGTQTL Trigger: GAGGGTCTGAGTCCCTGCTATTGCCACATATTTGCACCCTCTGACTACAGGACCATGATCATCAGCACCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR GCA 72 bp | GACCTCAGCAGTGTAAATGTAGATGGTGTTGAAGTTTaGTGCCACCAGGGCCCTCAGCATGAAGAGGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: DLSSVNVDGVEV*CHQGPQHEEEA Trigger: GGCTTCCTCTTCATGCTGAGGGCCCTGGTGGCAGCAAACTTCAACACCATCTACATTTACACTGCTGAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CAA 90 bp | CTCTCTAGGGTGTTCAGTGCAGCCTGGGTGTTCCCAGTGGAGACGTTGAAGCGAGATTCAGGGATAAACTaGAAGGCCATGATGAGGATG | + |
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Preference number: 3 (lower is better) Translates to: LSRVFSAAWVFPVETLKRDSGIN*KAMMRM Trigger: CATCCTCATCATGGCCTTCAAGTTTATCCCTGAATC...TCGCTTCAACGTCTCCACTGGGAACACCCAGGCTGCACTGAACACCCTAGAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CAA 90 bp | TGTATCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGCAACTGAGGAGGATATaGAACTCCTGGTCATCCTGC | + |
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Preference number: 3 (lower is better) Translates to: CILHPYLLLAPFNLRVYWQLRRI*NSWSSC Trigger: GCAGGATGACCAGGAGTTCAATATCCTCCTCAGTTG...CCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGATACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR GCA 72 bp | CTCAGCAGTGTAAATGTAGATGGTGTTGAAGTTTGCTaGCACCAGGGCCCTCAGCATGAAGAGGAAGCCAAT | + |
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Preference number: 3 (lower is better) Translates to: LSSVNVDGVEVC*HQGPQHEEEAN Trigger: ATTGGCTTCCTCTTCATGCTGAGGGCCCTGGTGGCAGCAAACTTCAACACCATCTACATTTACACTGCTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| 3UTR-3UTR CAA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGAGAGGCTTGTATATATaGTTCCCTAAGGAAGAACCC | + |
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Preference number: 3 (lower is better) Translates to: SSTLTFSWPHSISGFIGLRGLYI*FPKEEP Trigger: GGGTTCTTCCTTAGGGAACAATATATACAAGCCTCT...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CCA 72 bp | CAAATGAGAAGTGTATCCTCCACCCTTACCTTCTCCTaGCCCCATTCAATCTCAGGGTTTATTGGTTTGGAG | + |
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Preference number: 3 (lower is better) Translates to: QMRSVSSTLTFS*PHSISGFIGLE Trigger: CTCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGATACACTTCTCATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CCA 72 bp | AAACTAACTTTACAACTGAGGAGGATATTGAACTCCTaGTCATCCTGCCCCCTCAACCTGTATATGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: KLTLQLRRILNS*SSCPLNLYMLG Trigger: TCCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTCAGTTGTAAAGTTAGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CCA 72 bp | TACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTaGTTTGGAGGTAGGCTTTTGATGTTTGTAGACAAG | + |
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Preference number: 3 (lower is better) Translates to: YLLLAPFNLRVY*FGGRLLMFVDK Trigger: CTTGTCTACAAACATCAAAAGCCTACCTCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR GCA 72 bp | GAAGAACCCCACTGCATTCTTGGTGTGTGCCTTCATTaGCTTAATATAACTTGCTTTCTTAATTACCACGTG | + |
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Preference number: 3 (lower is better) Translates to: EEPHCILGVCLH*LNITCFLNYHV Trigger: CACGTGGTAATTAAGAAAGCAAGTTATATTAAGGCAATGAAGGCACACACCAAGAATGCAGTGGGGTTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR GCA 72 bp | CATGATTTAAATTCAGTGAAAATCAGTCTAATTTCTTaGCTTAGCTACAGAATCTCTGTCCTTCAGCCACAG | + |
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Preference number: 3 (lower is better) Translates to: HDLNSVKISLIS*LSYRISVLQPQ Trigger: CTGTGGCTGAAGGACAGAGATTCTGTAGCTAAGGCAAGAAATTAGACTGATTTTCACTGAATTTAAATCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | CTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGCCGTGCATCCCATGGTaGTCGACAGGCTCAGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: LEAEAGGFLSSRPSWSTKPCIPW*STGSAV Trigger: GACGGCTGAGCCTGTCGATCACCATGGGATGCACGG...CTTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | TCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAACTCAGACCCTCCCCTaGGTCCCCTGTGGTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SGGRGRWISEFEALLVYKTQTLP*VPCGLH Trigger: GTGGAGACCACAGGGGACTCAGGGGAGGGTCTGAGT...TTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | CTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGGGTTCTGGGGCTGCCTaGCTCAGTTTCCGAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LEAEAGGFLSSRPSWSTKGSGAA*LSFRRL Trigger: CAGCCTTCGGAAACTGAGCCAGGCAGCCCCAGAACC...CTTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | TCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGCTGTCCCTCTGGCATaGCTGAGCGGTTCATCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SGGRGRWISEFEALLVYKAVPLA*LSGSSW Trigger: CCAAGATGAACCGCTCAGTCATGCCAGAGGGACAGC...TTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR GCA 90 bp | TCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAATTGGTCTCTTTCTGCTaGGGTTCTGGGGCTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SGGRGRWISEFEALLVYKLVSFC*GSGAAW Trigger: CCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAA...TTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | CTGAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGAGCGCCCGAAGCCGATaGTCTCCACCGCATCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LRRILNSWSSCPLNLYMLSARSR*SPPHPP Trigger: TGGAGGATGCGGTGGAGACCATCGGCTTCGGGCGCT...CAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CAA 72 bp | ACCAGCTGTCCCTCTGGCATGACTGAGCGGTTCATCTaGGCAATGCTCTCTAGGGTGTTCAGTGCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: TSCPSGMTERFI*AMLSRVFSAAW Trigger: CCAGGCTGCACTGAACACCCTAGAGAGCATTGCCAAGATGAACCGCTCAGTCATGCCAGAGGGACAGCTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| CDS-3UTR GCA 90 bp | CTGAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGCTGCGGTTCTGGGGCTaGCTGGCTCAGTTTCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: LRRILNSWSSCPLNLYMLLRFWG*LAQFPK Trigger: CTTCGGAAACTGAGCCAGGCAGCCCCAGAACCGCAG...CAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR GCA 90 bp | TCTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGATGGTGTTGAAGTTTaGTGCCACCAGGGCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SGGRGRWISEFEALLVYKDGVEV*CHQGPQ Trigger: CTGAGGGCCCTGGTGGCAGCAAACTTCAACACCATC...TTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGGTGTTCAGTGCAGCCTaGGTGTTCCCAGTGGAGACG | + |
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Preference number: 4 (lower is better) Translates to: EEDIELLVILPPQPVYAGVFSAA*VFPVET Trigger: CGTCTCCACTGGGAACACCCAGGCTGCACTGAACAC...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | CTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGAAAACACCATCGTGGTaGCAAATGCCACCTGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LEAEAGGFLSSRPSWSTKKTPSW*QMPPAS Trigger: ACTGGCAGGTGGCATTTGTCACCACGATGGTGTTTT...CTTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGAGGAAGAGTGCAATGTaGAAGCGCCCGAAGCCGATG | + |
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Preference number: 4 (lower is better) Translates to: EEDIELLVILPPQPVYAGRKSAM*KRPKPM Trigger: CATCGGCTTCGGGCGCTTCCACATTGCACTCTTCCT...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CAA 72 bp | GTGTTCAGTGCAGCCTGGGTGTTCCCAGTGGAGACGTaGAAGCGAGCAGATTCAGGGATAAACTTGAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VFSAAWVFPVET*KRADSGINLKA Trigger: GGCCTTCAAGTTTATCCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGAACACCCAGGCTGCACTGAACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| CDS-3UTR GCA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGCATCGTGGTGACAAATaGCACCTGCCAGTTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: EEDIELLVILPPQPVYAGHRGDK*HLPVLQ Trigger: CTGGAGAACTGGCAGGTGGCATTTGTCACCACGATG...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR GCA 90 bp | CTGAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGTGTTGAAGTTTGCTaGCACCAGGGCCCTCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LRRILNSWSSCPLNLYMLGVEVC*HQGPQH Trigger: ATGCTGAGGGCCCTGGTGGCAGCAAACTTCAACACC...CAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR GCA 90 bp | TGTATCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGCTACCATTGCTCCAATaGGACACAGGGAGCCGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: CILHPYLLLAPFNLRVYWLPLLQ*DTGSRW Trigger: CCAGCGGCTCCCTGTGTCGCATTGGAGCAATGGTAG...CCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGATACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGATCCCAGTGGAGACGTTaGAGCGAGCAGATTCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGSQWRR*SEQIQG Trigger: TCCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGA...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGACAGCGCTGGCCAGGATaGCCCCATAATAGGCAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGQRWPG*PHNRQK Trigger: CTTTTGCCTATTATGGGGTCATCCTGGCCAGCGCTG...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGTTTCTGCTGCGGTTCTaGGGCTGCCTGGCTCAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SSTLTFSWPHSISGFIGLFLLRF*GCLAQF Trigger: AAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAA...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGCTGAGCGGTTCATCTTaGCAATGCTCTCTAGGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: EEDIELLVILPPQPVYAGLSGSS*QCSLGC Trigger: ACACCCTAGAGAGCATTGCCAAGATGAACCGCTCAG...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGACTCTTTTCTCCAGGATaGGCTCCACCAGCTGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGLFSPG*APPAVP Trigger: AGGGACAGCTGGTGGAGCCCATCCTGGAGAAAAGAG...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | CTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGGCACTCATTAGGACCTaGGATATAAATGGAGCTACC | + |
|
Preference number: 4 (lower is better) Translates to: LEAEAGGFLSSRPSWSTKALIRT*DINGAT Trigger: GGTAGCTCCATTTATATCCCAGGTCCTAATGAGTGC...CTTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGTCCCTCTGGCATGACTaGGCGGTTCATCTTGGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: SSTLTFSWPHSISGFIGLSLWHD*AVHLGN Trigger: ATTGCCAAGATGAACCGCTCAGTCATGCCAGAGGGA...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGACACAACACAGACAGATaGGAAAAGACACAGGGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGHNTDR*EKTQGS Trigger: GGAGCCCTGTGTCTTTTCTCATCTGTCTGTGTTGTG...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CAA 72 bp | ATGGTGATCGACAGGCTCAGCCGTCTGCCCAGGAAATaGATGCCCAGGATGTTTAAAGGGTTCAAAGCGATT | + |
|
Preference number: 4 (lower is better) Translates to: MVIDRLSRLPRK*MPRMFKGFKAI Trigger: AATCGCTTTGAACCCTTTAAACATCCTGGGCATCAATTTCCTGGGCAGACGGCTGAGCCTGTCGATCACCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172585.9 |
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| CDS-3UTR TCA 90 bp | CTGAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGTTTATGATTAACCCTTaGGCATGGCCAGACACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LRRILNSWSSCPLNLYMLFMINP*AWPDTP Trigger: TGGAGTGTCTGGCCATGCTCAAGGGTTAATCATAAA...CAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGTCTGCCCAGGAAATTaGTGCCCAGGATGTTTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: SSTLTFSWPHSISGFIGLVCPGN*CPGCLK Trigger: CTTTAAACATCCTGGGCATCAATTTCCTGGGCAGAC...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGAAATGTAGATGGTGTTaGAGTTTGCTGCCACCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SSTLTFSWPHSISGFIGLKCRWC*SLLPPG Trigger: CCCTGGTGGCAGCAAACTTCAACACCATCTACATTT...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR GCA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGAAATGGAGCTACCATTaGTCCAATGCGACACAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSTLTFSWPHSISGFIGLKWSYH*SNATQG Trigger: TCCCTGTGTCGCATTGGAGCAATGGTAGCTCCATTT...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR GCA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGCCTGTAGTCAGAGGGTaGAAATATGTGGCAATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SSTLTFSWPHSISGFIGLPVVRG*KYVAIA Trigger: TGCTATTGCCACATATTTGCACCCTCTGACTACAGG...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGGACCAAAAAGGATGCTaGATACCATGTAGCCAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: EEDIELLVILPPQPVYAGDQKGC*IPCSQK Trigger: TTTTTGGCTACATGGTATCCAGCATCCTTTTTGGTC...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| 3UTR CAA 72 bp | GCTAGCCTCAAACTAACTTTACAACTGAGGAGGATATaGAACTCCTGGTCATCCTGCCCCCTCAACCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: ASLKLTLQLRRI*NSWSSCPLNLY Trigger: ATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTCAGTTGTAAAGTTAGTTTGAGGCTAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR TCA 90 bp | TGTATCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGAAAATTCAGTCTTTATaGTTAACCCTTGAGCATGGC | + |
|
Preference number: 4 (lower is better) Translates to: CILHPYLLLAPFNLRVYWKIQSL*LTLEHG Trigger: GCCATGCTCAAGGGTTAATCATAAAGACTGAATTTT...CCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CCA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGAAGCCTCGGTATTTTGTaGGCAAAAATTCAGTCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGSLGIL*AKIQSL Trigger: TAAAGACTGAATTTTTGCCCACAAAATACCGAGGCT...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS TCA 90 bp | TGTGGAAGCGCCCGAAGCCGATGGTCTCCACCGCATCCTCCACCGTaGATGTCTTGGTCTCTTTCTGCTGCGGTTCTGGGGCTGCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: CGSARSRWSPPHPPP*MSWSLSAAVLGLPG Trigger: GCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGTGGAGGATGCGGTGGAGACCATCGGCTTCGGGCGCTTCCACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CCA 90 bp | GCCTCCACAACCCCGGTGCTGCCCATGATTAGGAAGAGTGCAATGTaGAAGCGCCCGAAGCCGATGGTCTCCACCGCATCCTCCACCGTG | + |
|
Preference number: 5 (lower is better) Translates to: ASTTPVLPMIRKSAM*KRPKPMVSTASSTV Trigger: CACGGTGGAGGATGCGGTGGAGACCATCGGCTTCGGGCGCTTCCACATTGCACTCTTCCTAATCATGGGCAGCACCGGGGTTGTGGAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CCA 90 bp | CGCATCCTCCACCGTGAATGTCTTGGTCTCTTTCTGCTGCGGTTCTaGGGCTGCCTGGCTCAGTTTCCGAAGGCTGATGATTGTCACGGG | + |
|
Preference number: 5 (lower is better) Translates to: RILHRECLGLFLLRF*GCLAQFPKADDCHG Trigger: CCCGTGACAATCATCAGCCTTCGGAAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGTGGAGGATGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CCA 90 bp | ACCGTGAATGTCTTGGTCTCTTTCTGCTGCGGTTCTGGGGCTGCCTaGCTCAGTTTCCGAAGGCTGATGATTGTCACGGGCTCTGTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: TVNVLVSFCCGSGAA*LSFRRLMIVTGSVC Trigger: GCAGACAGAGCCCGTGACAATCATCAGCCTTCGGAAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CAA 90 bp | CTGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCCTCCTGGTCTACAAAGCGTCTGCCCAGGAAATaGATGCCCAGGATGTTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: LEAEAGGFLSSRPSWSTKRLPRK*MPRMFK Trigger: TTTAAACATCCTGGGCATCAATTTCCTGGGCAGACG...CTTTGTAGACCAGGAGGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CAA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGTTCCCAGTGGAGACGTaGAAGCGAGCAGATTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: SSTLTFSWPHSISGFIGLFPVET*KRADSG Trigger: CCCTGAATCTGCTCGCTTCAACGTCTCCACTGGGAA...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CAA 90 bp | TCCTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGACTGAGCGGTTCATCTaGGCAATGCTCTCTAGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: SSTLTFSWPHSISGFIGLTERFI*AMLSRV Trigger: CACCCTAGAGAGCATTGCCAAGATGAACCGCTCAGT...CAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CAA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGGATTCAGGGATAAACTaGAAGGCCATGATGAGGATG | + |
|
Preference number: 5 (lower is better) Translates to: EEDIELLVILPPQPVYAGDSGIN*KAMMRM Trigger: CATCCTCATCATGGCCTTCAAGTTTATCCCTGAATC...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CAA 90 bp | CTCCACCCTTACCTTCTCCTGGCCCCATTCAATCTCAGGGTTTATTGGTTTGGATGCAAAGCGCGTCCTTaGGTCTCAATGGGAAGAGTA | + |
|
Preference number: 5 (lower is better) Translates to: LHPYLLLAPFNLRVYWFGCKARP*VSMGRV Trigger: TACTCTTCCCATTGAGACCAAAGGACGCGCTTTGCA...TCCAAACCAATAAACCCTGAGATTGAATGGGGCCAGGAGAAGGTAAGGGTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS-3UTR CAA 90 bp | GAGGAGGATATTGAACTCCTGGTCATCCTGCCCCCTCAACCTGTATATGCTGGGTGTAGCCTCGGTATTTaGTGGGCAAAAATTCAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: EEDIELLVILPPQPVYAGCSLGI*WAKIQS Trigger: AGACTGAATTTTTGCCCACAAAATACCGAGGCTACA...CCCAGCATATACAGGTTGAGGGGGCAGGATGACCAGGAGTTCAATATCCTCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS TCA 90 bp | GCAGCATGTAGCCTCGGTATTTTGTGGGCAAAAATTCAGTCTTTATaGTTAACCCTTGAGCATGGCCAGACACTCCACAGCCTACCATCG | + |
|
Preference number: 5 (lower is better) Translates to: AACSLGILWAKIQSL*LTLEHGQTLHSLPS Trigger: CGATGGTAGGCTGTGGAGTGTCTGGCCATGCTCAAGGGTTAATCATAAAGACTGAATTTTTGCCCACAAAATACCGAGGCTACATGCTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CAA 90 bp | CGCCCGAAGCCGATGGTCTCCACCGCATCCTCCACCGTGAATGTCTaGGTCTCTTTCTGCTGCGGTTCTGGGGCTGCCTGGCTCAGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: RPKPMVSTASSTVNV*VSFCCGSGAAWLSF Trigger: GAAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGTGGAGGATGCGGTGGAGACCATCGGCTTCGGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS TCA 72 bp | GCCCGAAGCCGATGGTCTCCACCGCATCCTCCACCGTaGATGTCTTGGTCTCTTTCTGCTGCGGTTCTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: ARSRWSPPHPPP*MSWSLSAAVLG Trigger: CCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGTGGAGGATGCGGTGGAGACCATCGGCTTCGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CCA 72 bp | ACCCCGGTGCTGCCCATGATTAGGAAGAGTGCAATGTaGAAGCGCCCGAAGCCGATGGTCTCCACCGCATCC | + |
|
Preference number: 6 (lower is better) Translates to: TPVLPMIRKSAM*KRPKPMVSTAS Trigger: GGATGCGGTGGAGACCATCGGCTTCGGGCGCTTCCACATTGCACTCTTCCTAATCATGGGCAGCACCGGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS GCA 72 bp | GCATCCTCCACCGTGAATGTCTTGGTCTCTTTCTGCTaGGGTTCTGGGGCTGCCTGGCTCAGTTTCCGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: ASSTVNVLVSFC*GSGAAWLSFRR Trigger: CCTTCGGAAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGTGGAGGATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CCA 72 bp | GTCTTGGTCTCTTTCTGCTGCGGTTCTGGGGCTGCCTaGCTCAGTTTCCGAAGGCTGATGATTGTCACGGGC | + |
|
Preference number: 6 (lower is better) Translates to: VLVSFCCGSGAA*LSFRRLMIVTG Trigger: GCCCGTGACAATCATCAGCCTTCGGAAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS CCA 72 bp | CACCGTGAATGTCTTGGTCTCTTTCTGCTGCGGTTCTaGGGCTGCCTGGCTCAGTTTCCGAAGGCTGATGAT | + |
|
Preference number: 6 (lower is better) Translates to: HRECLGLFLLRF*GCLAQFPKADD Trigger: ATCATCAGCCTTCGGAAACTGAGCCAGGCAGCCCCAGAACCGCAGCAGAAAGAGACCAAGACATTCACGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS TCA 72 bp | TTTGTGGGCAAAAATTCAGTCTTTATGATTAACCCTTaGGCATGGCCAGACACTCCACAGCCTACCATCGTC | + |
|
Preference number: 6 (lower is better) Translates to: FVGKNSVFMINP*AWPDTPQPTIV Trigger: GACGATGGTAGGCTGTGGAGTGTCTGGCCATGCTCAAGGGTTAATCATAAAGACTGAATTTTTGCCCACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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| CDS TCA 72 bp | AGCCTCGGTATTTTGTGGGCAAAAATTCAGTCTTTATaGTTAACCCTTGAGCATGGCCAGACACTCCACAGC | + |
|
Preference number: 6 (lower is better) Translates to: SLGILWAKIQSL*LTLEHGQTLHS Trigger: GCTGTGGAGTGTCTGGCCATGCTCAAGGGTTAATCATAAAGACTGAATTTTTGCCCACAAAATACCGAGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096040.11 |
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