Pregenerated sensors for SVIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074093Ensembl transcript IDs: ENSMUST00000098414.5, ENSMUST00000209193.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTGTTCTAACAGGAGGAGGGCTTCCCATGGTGAGGGCTGGTGTGTaGTGCCTCTCTCCCCATTCAGCTGAGTCAGCTTTCCTATGTCAG | + |
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Preference number: 1 (lower is better) Translates to: SVLTGGGLPMVRAGV*CLSPHSAESAFLCQ Trigger: CTGACATAGGAAAGCTGACTCAGCTGAATGGGGAGAGAGGCAGCACACACCAGCCCTCACCATGGGAAGCCCTCCTCCTGTTAGAACAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CCA 90 bp | AGGAGACATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTaGCAGGATTCTCTTCCAGGTCTGATATACTTCATGACACCGTCC | + |
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Preference number: 1 (lower is better) Translates to: RRHQLKAIDCSCRSW*QDSLPGLIYFMTPS Trigger: GGACGGTGTCATGAAGTATATCAGACCTGGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATGTCTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209193.2 |
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| 3UTR TCA 90 bp | CAGGTTCTTATCAAGCATCCTGCTTCCTCTTTTCAATCACATTCATaGGATTCAAATCACCATTTAGTGCCTACGACATGTGTGGCCTTG | + |
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Preference number: 1 (lower is better) Translates to: QVLIKHPASSFQSHS*DSNHHLVPTTCVAL Trigger: CAAGGCCACACATGTCGTAGGCACTAAATGGTGATTTGAATCTCATGAATGTGATTGAAAAGAGGAAGCAGGATGCTTGATAAGAACCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR TCA 90 bp | ATATTTAGTGTCAGGATTGCACGAAAGGGCACTAATGACACAGTCTaGCTCTTAATGTGTGTTAAGAGGAGACATCAGCTGAAAGCCATT | + |
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Preference number: 1 (lower is better) Translates to: IFSVRIARKGTNDTV*LLMCVKRRHQLKAI Trigger: AATGGCTTTCAGCTGATGTCTCCTCTTAACACACATTAAGAGTCAGACTGTGTCATTAGTGCCCTTTCGTGCAATCCTGACACTAAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| 3UTR TCA 90 bp | CCCTTTCCGTTATCAACCCCAGAGACATGGATGCGTCTCTGTGTGTaGAGACAAGTCACAATTTGTTTAAGATGGAGTAGAAACATTTTA | + |
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Preference number: 1 (lower is better) Translates to: PFPLSTPETWMRLCV*RQVTICLRWSRNIL Trigger: TAAAATGTTTCTACTCCATCTTAAACAAATTGTGACTTGTCTTCACACACAGAGACGCATCCATGTCTCTGGGGTTGATAACGGAAAGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 90 bp | GTGGGTTATAAAAATAAAGACTTCCTTCACCTGAAGTCCTTCAAATaGGTCTTCAGGATTTTCCCTGATGATCAGCTTAAAGGCACTAAG | + |
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Preference number: 1 (lower is better) Translates to: VGYKNKDFLHLKSFK*VFRIFPDDQLKGTK Trigger: CTTAGTGCCTTTAAGCTGATCATCAGGGAAAATCCTGAAGACGCATTTGAAGGACTTCAGGTGAAGGAAGTCTTTATTTTTATAACCCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR TCA 90 bp | GACACACCGTCAGATACCTTGGGAGAGGAACAGACAAGCCAATGGCTCAGTTTCATCACAAGCGTGCTTTaGCAGGCTTGGACTTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: DTPSDTLGEEQTSQWLSFITSVL*QAWTFQ Trigger: TTGGAAAGTCCAAGCCTGTCAAAGCACGCTTGTGAT...GAAACTGAGCCATTGGCTTGTCTGTTCCTCTCCCAAGGTATCTGACGGTGTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR GCA 90 bp | ATGTGTGACACACCGTCAGATACCTTGGGAGAGGAACAGACAAGCCAATGGCTCCTGAAGTCCTTCAAATaGGTCTTCAGGATTTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: MCDTPSDTLGEEQTSQWLLKSFK*VFRIFP Trigger: AGGGAAAATCCTGAAGACGCATTTGAAGGACTTCAG...GAGCCATTGGCTTGTCTGTTCCTCTCCCAAGGTATCTGACGGTGTGTCACACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CAA 90 bp | ATTTCTTCTTTCCAGGATGATAAACATGCCTTCTCCAGGCAGCCATaGTTTCCCTTTCCGTTATCAACCCCAGAGACATGGATGCGTCTC | + |
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Preference number: 2 (lower is better) Translates to: ISSFQDDKHAFSRQP*FPFPLSTPETWMRL Trigger: GAGACGCATCCATGTCTCTGGGGTTGATAACGGAAAGGGAAACAATGGCTGCCTGGAGAAGGCATGTTTATCATCCTGGAAAGAAGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTCTTTCCAGGATGATAAACATGCCTTCTCCAGGCAGCCATTGTTTCCCTAGCCATGGTCTACGATaGAGGGAAGAGAACGAGATG | + |
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Preference number: 2 (lower is better) Translates to: FLLSRMINMPSPGSHCFPSHGLR*REENEM Trigger: CATCTCGTTCTCTTCCCTTCATCGTAGACCATGGCT...AGGGAAACAATGGCTGCCTGGAGAAGGCATGTTTATCATCCTGGAAAGAAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCCTTCTCCAGGCAGCCATTGTTTCCCTTTCCGTTATCAACCCCAGAGACATGAACAGACAAGCCAATaGCTCAGTTTCTTCTTATGG | + |
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Preference number: 2 (lower is better) Translates to: MPSPGSHCFPFRYQPQRHEQTSQ*LSFFLW Trigger: CCATAAGAAGAAACTGAGCCATTGGCTTGTCTGTTC...ATGTCTCTGGGGTTGATAACGGAAAGGGAAACAATGGCTGCCTGGAGAAGGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTGTATCAGTTTCAGAATTACAATTAAGACTGAAGCTTGCATATGTTGGTCCATGCACAGGGCCTTaGAACAGCAGAGGGAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: PAVSVSELQLRLKLAYVGPCTGP*NSRGSP Trigger: TGGGCTCCCTCTGCTGTTCCAAGGCCCTGTGCATGG...ACCAACATATGCAAGCTTCAGTCTTAATTGTAATTCTGAAACTGATACAGCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR GCA 90 bp | TTTCTTCTTTCCAGGATGATAAACATGCCTTCTCCAGGCAGCCATTGTTTCCCTGACCAGGACACGCCATaGATATATACCTTTTGGATC | + |
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Preference number: 2 (lower is better) Translates to: FLLSRMINMPSPGSHCFPDQDTP*IYTFWI Trigger: GATCCAAAAGGTATATATGCATGGCGTGTCCTGGTC...AGGGAAACAATGGCTGCCTGGAGAAGGCATGTTTATCATCCTGGAAAGAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR CCA 90 bp | AACATAATAACATTTCTTCTTTCCAGGATGATAAACATGCCTTCTCCAGGCAGCAGTTGCCGGAGTTGGTaGCAGGATTCTCTTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: NIITFLLSRMINMPSPGSSCRSW*QDSLPG Trigger: ACCTGGAAGAGAATCCTGCCACCAACTCCGGCAACT...GCTGCCTGGAGAAGGCATGTTTATCATCCTGGAAAGAAGAAATGTTATTATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CAA 90 bp | TTGAACACATCTATTATCACTCATTTTCTCCAACCTGGTTCTCAGTaGGCCTCATCCCTTCACTACACATACCTTCATGCTTCTAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LNTSIITHFLQPGSQ*ASSLHYTYLHASSR Trigger: CCTGCTAGAAGCATGAAGGTATGTGTAGTGAAGGGATGAGGCCAACTGAGAACCAGGTTGGAGAAAATGAGTGATAATAGATGTGTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR TCA 90 bp | CCAGCTGTATCAGTTTCAGAATTACAATTAAGACTGAAGCTTGCATATGTTGGTACTAATGACACAGTCTaGCTCTTAATGTGTGTTAAG | + |
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Preference number: 2 (lower is better) Translates to: PAVSVSELQLRLKLAYVGTNDTV*LLMCVK Trigger: CTTAACACACATTAAGAGTCAGACTGTGTCATTAGT...ACCAACATATGCAAGCTTCAGTCTTAATTGTAATTCTGAAACTGATACAGCTGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 72 bp | GGAGGAGGGCTTCCCATGGTGAGGGCTGGTGTGTGCTaGCTCTCTCCCCATTCAGCTGAGTCAGCTTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: GGGLPMVRAGVC*LSPHSAESAFL Trigger: TAGGAAAGCTGACTCAGCTGAATGGGGAGAGAGGCAGCACACACCAGCCCTCACCATGGGAAGCCCTCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTCTTTCCAGGATGATAAACATGCCTTCTCCAGGCAGCCATTGTTTCCCTGCCATGCACAGGGCCTaGGAACAGCAGAGGGAGCCC | + |
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Preference number: 3 (lower is better) Translates to: FLLSRMINMPSPGSHCFPAMHRA*EQQREP Trigger: GGGCTCCCTCTGCTGTTCCAAGGCCCTGTGCATGGC...AGGGAAACAATGGCTGCCTGGAGAAGGCATGTTTATCATCCTGGAAAGAAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 72 bp | AAGAGGAGACATCAGCTGAAAGCCATTGACTGCAGTTaGCGGAGTTGGTGGCAGGATTCTCTTCCAGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: KRRHQLKAIDCS*RSWWQDSLPGL Trigger: CAGACCTGGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATGTCTCCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| 3UTR-3UTR CAA 90 bp | TTAATGTGTGTTAAGAGGAGACATCAGCTGAAAGCCATTGACTGCAGTTGCCGGCTGCAGTTGCCGGAGTaGGTGGCAGGATTCTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LMCVKRRHQLKAIDCSCRLQLPE*VAGFSS Trigger: GGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAG...CCGGCAACTGCAGTCAATGGCTTTCAGCTGATGTCTCCTCTTAACACACATTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| 3UTR GCA 72 bp | TGTGTTAAGAGGAGACATCAGCTGAAAGCCATTGACTaGAGTTGCCGGAGTTGGTGGCAGGATTCTCTTCCA | + |
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Preference number: 3 (lower is better) Translates to: CVKRRHQLKAID*SCRSWWQDSLP Trigger: TGGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATGTCTCCTCTTAACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| 3UTR CCA 72 bp | CAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTaGCAGGATTCTCTTCCAGGTCTGATATACTTCATG | + |
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Preference number: 3 (lower is better) Translates to: QLKAIDCSCRSW*QDSLPGLIYFM Trigger: CATGAAGTATATCAGACCTGGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209193.2 |
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| 3UTR CCA 72 bp | CATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTaGTGGCAGGATTCTCTTCCAGGTCTGATATACTTC | + |
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Preference number: 3 (lower is better) Translates to: HQLKAIDCSCRS*WQDSLPGLIYF Trigger: GAAGTATATCAGACCTGGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209193.2 |
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| 3UTR TCA 72 bp | ACCAAGCCTTCTCTTTGCACGAGCCATGGTCTACGATaGAGGGAAGAGAACGAGATGTCTGTTCTAACAGGA | + |
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Preference number: 3 (lower is better) Translates to: TKPSLCTSHGLR*REENEMSVLTG Trigger: TCCTGTTAGAACAGACATCTCGTTCTCTTCCCTTCATCGTAGACCATGGCTCGTGCAAAGAGAAGGCTTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR CAA 90 bp | CCAGCTGTATCAGTTTCAGAATTACAATTAAGACTGAAGCTTGCATATGTTGGTCTGCAGTTGCCGGAGTaGGTGGCAGGATTCTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: PAVSVSELQLRLKLAYVGLQLPE*VAGFSS Trigger: GGAAGAGAATCCTGCCACCAACTCCGGCAACTGCAG...ACCAACATATGCAAGCTTCAGTCTTAATTGTAATTCTGAAACTGATACAGCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR-3UTR CAA 90 bp | GACACACCGTCAGATACCTTGGGAGAGGAACAGACAAGCCAATGGCTCAGTTTCTCTTTCACACTTTCATaGGCAACACCATGTTTGTAT | + |
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Preference number: 3 (lower is better) Translates to: DTPSDTLGEEQTSQWLSFSFTLS*ATPCLY Trigger: ATACAAACATGGTGTTGCCAATGAAAGTGTGAAAGA...GAAACTGAGCCATTGGCTTGTCTGTTCCTCTCCCAAGGTATCTGACGGTGTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR TCA 72 bp | GTCAGGATTGCACGAAAGGGCACTAATGACACAGTCTaGCTCTTAATGTGTGTTAAGAGGAGACATCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: VRIARKGTNDTV*LLMCVKRRHQL Trigger: CAGCTGATGTCTCCTCTTAACACACATTAAGAGTCAGACTGTGTCATTAGTGCCCTTTCGTGCAATCCTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| 3UTR CCA 72 bp | TTAAAAAGAGCATGTGTGACACACCGTCAGATACCTTaGGAGAGGAACAGACAAGCCAATGGCTCAGTTTCT | + |
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Preference number: 3 (lower is better) Translates to: LKRACVTHRQIP*ERNRQANGSVS Trigger: AGAAACTGAGCCATTGGCTTGTCTGTTCCTCTCCCAAGGTATCTGACGGTGTGTCACACATGCTCTTTTTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 72 bp | GTCTTGGCATCGATAGCAGCAGCAGCCTTGCACACTTaGATCTTCGCTTATTACGTAGTAAGAAGAAAACAA | + |
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Preference number: 3 (lower is better) Translates to: VLASIAAAALHT*IFAYYVVRRKQ Trigger: TTGTTTTCTTCTTACTACGTAATAAGCGAAGATGCAAGTGTGCAAGGCTGCTGCTGCTATCGATGCCAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 72 bp | TGTTTCCCTTTCCGTTATCAACCCCAGAGACATGGATaGGTCTCTGTGTGTGAAGACAAGTCACAATTTGTT | + |
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Preference number: 3 (lower is better) Translates to: CFPFRYQPQRHG*VSVCEDKSQFV Trigger: AACAAATTGTGACTTGTCTTCACACACAGAGACGCATCCATGTCTCTGGGGTTGATAACGGAAAGGGAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR TCA 72 bp | GCTGACGTCCTACGGACATGTAACTTCACGTTAATATaGTATGCCTTAGGTACACAAAATAAATTAGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: ADVLRTCNFTLI*YALGTQNKLAE Trigger: CTCTGCTAATTTATTTTGTGTACCTAAGGCATATCATATTAACGTGAAGTTACATGTCCGTAGGACGTCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR TCA 72 bp | ATCAAGCATCCTGCTTCCTCTTTTCAATCACATTCATaGGATTCAAATCACCATTTAGTGCCTACGACATGT | + |
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Preference number: 3 (lower is better) Translates to: IKHPASSFQSHS*DSNHHLVPTTC Trigger: ACATGTCGTAGGCACTAAATGGTGATTTGAATCTCATGAATGTGATTGAAAAGAGGAAGCAGGATGCTTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 72 bp | CAACACTGGAGATATATGTACGACCAGGACACGCCATaGATATATACCTTTTGGATCCATATTTTAACTACA | + |
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Preference number: 3 (lower is better) Translates to: QHWRYMYDQDTP*IYTFWIHILTT Trigger: TGTAGTTAAAATATGGATCCAAAAGGTATATATGCATGGCGTGTCCTGGTCGTACATATATCTCCAGTGTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR GCA 72 bp | AAAAATAAAGACTTCCTTCACCTGAAGTCCTTCAAATaGGTCTTCAGGATTTTCCCTGATGATCAGCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: KNKDFLHLKSFK*VFRIFPDDQLK Trigger: TTTAAGCTGATCATCAGGGAAAATCCTGAAGACGCATTTGAAGGACTTCAGGTGAAGGAAGTCTTTATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CCA 72 bp | AAGTACAGAACTCACATGTTTCTTTCACACTTTCATTaGCAACACCATGTTTGTATAGATCTTACAACTGTT | + |
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Preference number: 3 (lower is better) Translates to: KYRTHMFLSHFH*QHHVCIDLTTV Trigger: AACAGTTGTAAGATCTATACAAACATGGTGTTGCCAATGAAAGTGTGAAAGAAACATGTGAGTTCTGTACTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CAA 72 bp | ATATCGGTGGGGCAGGCCATAGCCATGCACAGGGCCTaGGAACAGCAGAGGGAGCCCACAGATGCCAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: ISVGQAIAMHRA*EQQREPTDAKS Trigger: GCTTTTGGCATCTGTGGGCTCCCTCTGCTGTTCCAAGGCCCTGTGCATGGCTATGGCCTGCCCCACCGATAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| CDS-3UTR GCA 90 bp | CATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTGGCAGGATTCTCTTCCATCTAAGTCCCCCTaGCGTTGGTGGCCCCGATGT | + |
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Preference number: 4 (lower is better) Translates to: HQLKAIDCSCRSWWQDSLPSKSP*RWWPRC Trigger: ACATCGGGGCCACCAACGGCAGGGGGACTTAGATGG...AAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| CDS-3UTR GCA 90 bp | CATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTGGCAGGATTCTCTTGTCGCCGCCTCCTTCTaGCTTCTTTCTGCTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: HQLKAIDCSCRSWWQDSLVAASF*LLSAAS Trigger: AGAGGCAGCAGAAAGAAGGCAGAAGGAGGCGGCGAC...AAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| CDS-3UTR GCA 90 bp | CATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTGGCAGGATTCTCTTCTTCTGCCTTCTTTCTaGTGCCTCTGCCAGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: HQLKAIDCSCRSWWQDSLLLPSF*CLCQLF Trigger: GAAAAGCTGGCAGAGGCAGCAGAAAGAAGGCAGAAG...AAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| CDS-3UTR GCA 90 bp | GACACACCGTCAGATACCTTGGGAGAGGAACAGACAAGCCAATGGCTCAGTTTCCCCGATGTCGCCATCTaGTTTTCTAACTGTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: DTPSDTLGEEQTSQWLSFPDVAI*FSNCSF Trigger: GAAGGAACAGTTAGAAAAGCAGATGGCGACATCGGG...GAAACTGAGCCATTGGCTTGTCTGTTCCTCTCCCAAGGTATCTGACGGTGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| CDS-3UTR GCA 90 bp | CATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTGGCAGGATTCTCTTCCCGATGTCGCCATCTaGTTTTCTAACTGTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: HQLKAIDCSCRSWWQDSLPDVAI*FSNCSF Trigger: GAAGGAACAGTTAGAAAAGCAGATGGCGACATCGGG...AAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| CDS-3UTR GCA 90 bp | ATGTGTGTTAAGAGGAGACATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTCTTCTGCCTTCTTTCTaGTGCCTCTGCCAGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: MCVKRRHQLKAIDCSCRSLLPSF*CLCQLF Trigger: GAAAAGCTGGCAGAGGCAGCAGAAAGAAGGCAGAAG...ACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATGTCTCCTCTTAACACACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| 3UTR CAA 72 bp | GCACTGAATGTCTTGGCATCGATAGCAGCAGCAGCCTaGCACACTTGCATCTTCGCTTATTACGTAGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: ALNVLASIAAAA*HTCIFAYYVVR Trigger: TCTTACTACGTAATAAGCGAAGATGCAAGTGTGCAAGGCTGCTGCTGCTATCGATGCCAAGACATTCAGTGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CAA 72 bp | TCTATTATCACTCATTTTCTCCAACCTGGTTCTCAGTaGGCCTCATCCCTTCACTACACATACCTTCATGCT | + |
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Preference number: 4 (lower is better) Translates to: SIITHFLQPGSQ*ASSLHYTYLHA Trigger: AGCATGAAGGTATGTGTAGTGAAGGGATGAGGCCAACTGAGAACCAGGTTGGAGAAAATGAGTGATAATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CAA 72 bp | GACAATGTCATAAATCACAAGCGTGCTTTGACAGGCTaGGACTTTCCAAGTACAGAACTCACATGTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: DNVINHKRALTG*DFPSTELTCFF Trigger: AAAGAAACATGTGAGTTCTGTACTTGGAAAGTCCAAGCCTGTCAAAGCACGCTTGTGATTTATGACATTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| 3UTR CAA 72 bp | CAAGTACAGAACTCACATGTTTCTTTCACACTTTCATaGGCAACACCATGTTTGTATAGATCTTACAACTGT | + |
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Preference number: 4 (lower is better) Translates to: QVQNSHVSFTLS*ATPCLYRSYNC Trigger: ACAGTTGTAAGATCTATACAAACATGGTGTTGCCAATGAAAGTGTGAAAGAAACATGTGAGTTCTGTACTTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098414.5 |
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| CDS-3UTR CAA 90 bp | CATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTTGGTGGCAGGATTCTCTTCCTTCTTCTTCTTTTTaGCCTCCACTGACTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: HQLKAIDCSCRSWWQDSLPSSSF*PPLTGC Trigger: ACATCCAGTCAGTGGAGGCAAAAAAGAAGAAGAAGG...AAGAGAATCCTGCCACCAACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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| CDS-3UTR CAA 90 bp | ATGTGTGTTAAGAGGAGACATCAGCTGAAAGCCATTGACTGCAGTTGCCGGAGTCCTTCTTCTTCTTTTTaGCCTCCACTGACTGGATGT | + |
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Preference number: 5 (lower is better) Translates to: MCVKRRHQLKAIDCSCRSPSSSF*PPLTGC Trigger: ACATCCAGTCAGTGGAGGCAAAAAAGAAGAAGAAGG...ACTCCGGCAACTGCAGTCAATGGCTTTCAGCTGATGTCTCCTCTTAACACACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098414.5 ENSMUST00000209193.2 |
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