Pregenerated sensors for SVBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028643Ensembl transcript IDs: ENSMUST00000030395.9, ENSMUST00000097908.4, ENSMUST00000106345.3, ENSMUST00000210595.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AATGAGCTCACAGACAAAGGCAGGCACCAGTTCCTCTaGCGGGGATGCAGGCTGGCTCACTCCCCAGGCGGC | + |
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Preference number: 3 (lower is better) Translates to: NELTDKGRHQFL*RGCRLAHSPGG Trigger: GCCGCCTGGGGAGTGAGCCAGCCTGCATCCCCGGCAGAGGAACTGGTGCCTGCCTTTGTCTGTGAGCTCATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| 3UTR-3UTR CAA 90 bp | ATAGGAAGTTCAGTGCAGAGGTCTCCACAAGTCCTGATTAGTTCTGTAAGGCTCTTCTGTAAGGCTCCATaGGGCCAGCTCAGGGTAACA | + |
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Preference number: 3 (lower is better) Translates to: IGSSVQRSPQVLISSVRLFCKAP*GQLRVT Trigger: TGTTACCCTGAGCTGGCCCAATGGAGCCTTACAGAA...GAGCCTTACAGAACTAATCAGGACTTGTGGAGACCTCTGCACTGAACTTCCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | ATGAGCTCACAGACAAAGGCAGGCACCAGTTCCTCTGCCGGGGATGCAGGCTGGTGCTGGGCAGATTTCTaGTTAGCCTTCTCCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: MSSQTKAGTSSSAGDAGWCWADF*LAFSTL Trigger: CAGAGTGGAGAAGGCTAAGCAGAAATCTGCCCAGCA...CCAGCCTGCATCCCCGGCAGAGGAACTGGTGCCTGCCTTTGTCTGTGAGCTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR CCA 90 bp | AGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTTCCTCTGCCGGGGATGCTGCTTCAGCTCCTGCTaGGCAGATTTCTGCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: SGNELTDKGRHQFLCRGCCFSSC*ADFCLA Trigger: GGCTAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCA...GCATCCCCGGCAGAGGAACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR CCA 90 bp | GGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTTGGGTCTGCAAGTCTTaGGGTCACAGCAGAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: GQLRVTVGMSSQTKAGTSWVCKS*GHSRAL Trigger: CAGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCA...ACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | AGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTTCCTCTGCCGGGGATGCTCATCAAACTGCTGCTaGTCCAGCTCCGTCATGACT | + |
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Preference number: 4 (lower is better) Translates to: SGNELTDKGRHQFLCRGCSSNCC*SSSVMT Trigger: AGTCATGACGGAGCTGGAGCAGCAGCAGTTTGATGA...GCATCCCCGGCAGAGGAACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR CCA 90 bp | GGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTTGCTTCAGCTCCTGCTaGGCAGATTTCTGCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: GQLRVTVGMSSQTKAGTSCFSSC*ADFCLA Trigger: GGCTAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCA...ACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | GGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTAACTCATCAAACTGCTaGTGCTCCAGCTCCGTCATG | + |
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Preference number: 4 (lower is better) Translates to: GQLRVTVGMSSQTKAGTSNSSNC*CSSSVM Trigger: CATGACGGAGCTGGAGCAGCAGCAGTTTGATGAGTT...ACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR GCA 90 bp | TGTAAGGCTCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACATCTGCTCTCTGTCTTTaGTTCAGCTCCTGCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: CKAPLGQLRVTVGMSSQTSALCL*FSSCWA Trigger: TGCCCAGCAGGAGCTGAAGCAAAGACAGAGAGCAGA...TGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGAGCCTTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | TGTAAGGCTCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACATGCTGGGCAGATTTCTaGTTAGCCTTCTCCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: CKAPLGQLRVTVGMSSQTCWADF*LAFSTL Trigger: CAGAGTGGAGAAGGCTAAGCAGAAATCTGCCCAGCA...TGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGAGCCTTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | GCTCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCACTTTGCTTCAGCTCCTaGTGGGCAGATTTCTGCTTA | + |
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Preference number: 4 (lower is better) Translates to: APLGQLRVTVGMSSQTKALCFSS*WADFCL Trigger: TAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCAAAG...TGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | TGTAAGGCTCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACATCATCAAACTGCTGCTaGTCCAGCTCCGTCATGACT | + |
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Preference number: 4 (lower is better) Translates to: CKAPLGQLRVTVGMSSQTSSNCC*SSSVMT Trigger: AGTCATGACGGAGCTGGAGCAGCAGCAGTTTGATGA...TGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGAGCCTTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR GCA 90 bp | TGTAAGGCTCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACACCAGGCGGCTGCATCTaGTTACAGAACTCATCAAAC | + |
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Preference number: 4 (lower is better) Translates to: CKAPLGQLRVTVGMSSQTPGGCI*LQNSSN Trigger: GTTTGATGAGTTCTGTAAGCAGATGCAGCCGCCTGG...TGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGAGCCTTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR GCA 90 bp | GCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTTCCTCGAGAGCATAGATCTCTaGTCTCTGTCTTTGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: AQGNSGNELTDKGRHQFLESIDL*SLSLLQ Trigger: CTGAAGCAAAGACAGAGAGCAGAGATCTATGCTCTC...GAGGAACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR GCA 90 bp | TCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCAGGGAGAGCATAGATCTCTaGTCTCTGTCTTTGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SIGPAQGNSGNELTDKGRESIDL*SLSLLQ Trigger: CTGAAGCAAAGACAGAGAGCAGAGATCTATGCTCTC...CCTGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR GCA 90 bp | AAAAGTCTACCCAGCAAGCACTGGGGCAGTTCTGAGAGTAGAAACCAGTGTGGTTGCTGGGCAGATTTCTaGTTAGCCTTCTCCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: KSLPSKHWGSSESRNQCGCWADF*LAFSTL Trigger: CAGAGTGGAGAAGGCTAAGCAGAAATCTGCCCAGCA...ACCACACTGGTTTCTACTCTCAGAACTGCCCCAGTGCTTGCTGGGTAGACTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | CAGAGGTCTCCACAAGTCCTGATTAGTTCTGTAAGGCTCCATTGGGCCAGCTCACTTTGCTTCAGCTCCTaGTGGGCAGATTTCTGCTTA | + |
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Preference number: 4 (lower is better) Translates to: QRSPQVLISSVRLHWASSLCFSS*WADFCL Trigger: TAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCAAAG...TGAGCTGGCCCAATGGAGCCTTACAGAACTAATCAGGACTTGTGGAGACCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | ATGAAAAGTCTACCCAGCAAGCACTGGGGCAGTTCTGAGAGTAGAAACCAGTGTTCTGCTCTCTGTCTTTaGTTCAGCTCCTGCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: MKSLPSKHWGSSESRNQCSALCL*FSSCWA Trigger: TGCCCAGCAGGAGCTGAAGCAAAGACAGAGAGCAGA...ACACTGGTTTCTACTCTCAGAACTGCCCCAGTGCTTGCTGGGTAGACTTTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | ATAGGAAGTTCAGTGCAGAGGTCTCCACAAGTCCTGATTAGTTCTGTAAGGCTCGTGAGACTCTGGGTCTaGAAGTCTTGGGGTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: IGSSVQRSPQVLISSVRLVRLWV*KSWGHS Trigger: GCTGTGACCCCAAGACTTGCAGACCCAGAGTCTCAC...GAGCCTTACAGAACTAATCAGGACTTGTGGAGACCTCTGCACTGAACTTCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS-3UTR CCA 90 bp | TTCTGTAAGGCTCCATTGGGCCAGCTCAGGGTAACAGTGGGAATGAGCTCACAGCTTCTGAATGCTTCTTaGTTAGCTCTGACCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: FCKAPLGQLRVTVGMSSQLLNAS*LALTLL Trigger: CAGCAAGGTCAGAGCTAACCAAGAAGCATTCAGAAG...CTGTGAGCTCATTCCCACTGTTACCCTGAGCTGGCCCAATGGAGCCTTACAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS-3UTR GCA 90 bp | ATAGGAAGTTCAGTGCAGAGGTCTCCACAAGTCCTGATTAGTTCTGTAAGGCTCTCTGCTCTCTGTCTTTaGTTCAGCTCCTGCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: IGSSVQRSPQVLISSVRLSALCL*FSSCWA Trigger: TGCCCAGCAGGAGCTGAAGCAAAGACAGAGAGCAGA...GAGCCTTACAGAACTAATCAGGACTTGTGGAGACCTCTGCACTGAACTTCCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS-3UTR GCA 90 bp | ATAGGAAGTTCAGTGCAGAGGTCTCCACAAGTCCTGATTAGTTCTGTAAGGCTCAACTCATCAAACTGCTaGTGCTCCAGCTCCGTCATG | + |
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Preference number: 4 (lower is better) Translates to: IGSSVQRSPQVLISSVRLNSSNC*CSSSVM Trigger: CATGACGGAGCTGGAGCAGCAGCAGTTTGATGAGTT...GAGCCTTACAGAACTAATCAGGACTTGTGGAGACCTCTGCACTGAACTTCCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 |
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| CDS-3UTR CCA 90 bp | GCAGTTCTGAGAGTAGAAACCAGTGTGGTGGAAGTTACTTATAGGAAGTTCAGTTGCTTCAGCTCCTGCTaGGCAGATTTCTGCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: AVLRVETSVVEVTYRKFSCFSSC*ADFCLA Trigger: GGCTAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCA...ACTGAACTTCCTATAAGTAACTTCCACCACACTGGTTTCTACTCTCAGAACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 |
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| CDS GCA 90 bp | GGTCTGCAAGTCTTGGGGTCACAGCAGAGCTCTGCTCTCTGTCTTTaGTTCAGCTCCTGCTGGGCAGATTTCTGCTTAGCCTTCTCCACT | + |
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Preference number: 5 (lower is better) Translates to: GLQVLGSQQSSALCL*FSSCWADFCLAFST Trigger: AGTGGAGAAGGCTAAGCAGAAATCTGCCCAGCAGGAGCTGAAGCAAAGACAGAGAGCAGAGCTCTGCTGTGACCCCAAGACTTGCAGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS CCA 90 bp | CATGACTCTGTTGAGAGCATAGATCTGAGGCAGGGAGTGAGACTCTaGGTCTGCAAGTCTTGGGGTCACAGCAGAGCTCTGCTCTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: HDSVESIDLRQGVRL*VCKSWGHSRALLSV Trigger: GACAGAGAGCAGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCAGAGTCTCACTCCCTGCCTCAGATCTATGCTCTCAACAGAGTCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS-3UTR CAA 90 bp | CAGAGGTCTCCACAAGTCCTGATTAGTTCTGTAAGGCTCCATTGGGCCAGCTCACTGGGTCTGCAAGTCTaGGGGTCACAGCAGAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: QRSPQVLISSVRLHWASSLGLQV*GSQQSS Trigger: AGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCAG...TGAGCTGGCCCAATGGAGCCTTACAGAACTAATCAGGACTTGTGGAGACCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS CCA 90 bp | TCTTTCCGGGCAGGTGGATCCATGGTTTGGCTTCTGAATGCTTCTTaGTTAGCTCTGACCTTGCTGTGCGTTCCTAGTCGAGTCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SFRAGGSMVWLLNAS*LALTLLCVPSRVSS Trigger: TGAGGAGACTCGACTAGGAACGCACAGCAAGGTCAGAGCTAACCAAGAAGCATTCAGAAGCCAAACCATGGATCCACCTGCCCGGAAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS-3UTR CAA 90 bp | GCTCAGGGTAACAGTGGGAATGAGCTCACAGACAAAGGCAGGCACCAGTTCCTCAGGTGGATCCATGGTTaGGCTTCTGAATGCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: AQGNSGNELTDKGRHQFLRWIHG*ASECFL Trigger: CAAGAAGCATTCAGAAGCCAAACCATGGATCCACCT...GAGGAACTGGTGCCTGCCTTTGTCTGTGAGCTCATTCCCACTGTTACCCTGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS CCA 90 bp | TCTGAAGGCTGGTTCTTTAACTTTGGATTTTTCTTTCCGGGCAGGTaGATCCATGGTTTGGCTTCTGAATGCTTCTTGGTTAGCTCTGAC | + |
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Preference number: 5 (lower is better) Translates to: SEGWFFNFGFFFPGR*IHGLASECFLVSSD Trigger: GTCAGAGCTAACCAAGAAGCATTCAGAAGCCAAACCATGGATCCACCTGCCCGGAAAGAAAAATCCAAAGTTAAAGAACCAGCCTTCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS CCA 72 bp | CTGAGGCAGGGAGTGAGACTCTGGGTCTGCAAGTCTTaGGGTCACAGCAGAGCTCTGCTCTCTGTCTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: LRQGVRLWVCKS*GHSRALLSVFA Trigger: AGCAAAGACAGAGAGCAGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCAGAGTCTCACTCCCTGCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS CAA 72 bp | TCTGAGGCAGGGAGTGAGACTCTGGGTCTGCAAGTCTaGGGGTCACAGCAGAGCTCTGCTCTCTGTCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: SEAGSETLGLQV*GSQQSSALCLC Trigger: GCAAAGACAGAGAGCAGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCAGAGTCTCACTCCCTGCCTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS GCA 72 bp | AGCATAGATCTGAGGCAGGGAGTGAGACTCTGGGTCTaGAAGTCTTGGGGTCACAGCAGAGCTCTGCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SIDLRQGVRLWV*KSWGHSRALLS Trigger: AGAGAGCAGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCAGAGTCTCACTCCCTGCCTCAGATCTATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS CCA 72 bp | GTTGAGAGCATAGATCTGAGGCAGGGAGTGAGACTCTaGGTCTGCAAGTCTTGGGGTCACAGCAGAGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: VESIDLRQGVRL*VCKSWGHSRAL Trigger: CAGAGCTCTGCTGTGACCCCAAGACTTGCAGACCCAGAGTCTCACTCCCTGCCTCAGATCTATGCTCTCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106345.3 |
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| CDS GCA 72 bp | TTTCCGGGCAGGTGGATCCATGGTTTGGCTTCTGAATaGTTCTTGGTTAGCTCTGACCTTGCTGTGCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: FPGRWIHGLASE*FLVSSDLAVRS Trigger: GGAACGCACAGCAAGGTCAGAGCTAACCAAGAAGCATTCAGAAGCCAAACCATGGATCCACCTGCCCGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS CAA 90 bp | GATTTCTGCTTAGCCTTCTCCACTCTGAAGGCTGGTTCTTTAACTTaGGATTTTTCTTTCCGGGCAGGTGGATCCATGGTTTGGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: DFCLAFSTLKAGSLT*DFSFRAGGSMVWLL Trigger: CAGAAGCCAAACCATGGATCCACCTGCCCGGAAAGAAAAATCCAAAGTTAAAGAACCAGCCTTCAGAGTGGAGAAGGCTAAGCAGAAATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS CCA 72 bp | GGCAGATTTCTGCTTAGCCTTCTCCACTCTGAAGGCTaGTTCTTTAACTTTGGATTTTTCTTTCCGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GRFLLSLLHSEG*FFNFGFFFPGR Trigger: CCTGCCCGGAAAGAAAAATCCAAAGTTAAAGAACCAGCCTTCAGAGTGGAGAAGGCTAAGCAGAAATCTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000030395.9 ENSMUST00000097908.4 ENSMUST00000106345.3 ENSMUST00000210595.2 |
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| CDS CAA 72 bp | TTTGGATTTTTCTTTCCGGGCAGGTGGATCCATGGTTaGGCTTCTGAATGCTTCTTGGTTAGCTCTGACCTT | + |
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Preference number: 6 (lower is better) Translates to: FGFFFPGRWIHG*ASECFLVSSDL Trigger: AAGGTCAGAGCTAACCAAGAAGCATTCAGAAGCCAAACCATGGATCCACCTGCCCGGAAAGAAAAATCCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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| CDS CCA 72 bp | TGGTTCTTTAACTTTGGATTTTTCTTTCCGGGCAGGTaGATCCATGGTTTGGCTTCTGAATGCTTCTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: WFFNFGFFFPGR*IHGLASECFLV Trigger: AACCAAGAAGCATTCAGAAGCCAAACCATGGATCCACCTGCCCGGAAAGAAAAATCCAAAGTTAAAGAACCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097908.4 |
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