Pregenerated sensors for SVAL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062833

Ensembl transcript IDs: ENSMUST00000080742.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TTTGTAACTGTGAGTTCTACTATAACTTCATTTGTCCTGTTTGTCTaGGAGAGTCTCCTGTTGAGTGAAAGTGACTTGTTTCTATTGTCT	+
Preference number: 5 (lower is better) Translates to: FVTVSSTITSFVLFV*ESLLLSESDLFLLS Trigger: AGACAATAGAAACAAGTCACTTTCACTCAACAGGAGACTCTCTCAGACAAACAGGACAAATGAAGTTATAGTAGAACTCACAGTTACAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS TCA 72 bp	AGGCAGTCTCCAGAAGTAGGCTCAGAATCAGGAGCATaGCTCCTCCAGTCTGCTGGAGAATTTGAAGAGAAG	+
Preference number: 6 (lower is better) Translates to: RQSPEVGSESGA*LLQSAGEFEEK Trigger: CTTCTCTTCAAATTCTCCAGCAGACTGGAGGAGTCATGCTCCTGATTCTGAGCCTACTTCTGGAGACTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS TCA 72 bp	TCCACCTTCATTTGTAGGACAGCATTCTCAGAGACATaGACGTTCCAGAAGAATTTGGCAGAAGTACACACA	+
Preference number: 6 (lower is better) Translates to: STFICRTAFSET*TFQKNLAEVHT Trigger: TGTGTGTACTTCTGCCAAATTCTTCTGGAACGTTCATGTCTCTGAGAATGCTGTCCTACAAATGAAGGTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS CAA 90 bp	GAAGTACACACACAAGCAAGAGGGATTTCAGGAGTAGAAAGGTACTaGATATTTGGATTGTCCTCAGTACTGATTTCTATCCCCAAGCAT	+
Preference number: 6 (lower is better) Translates to: EVHTQARGISGVERY*IFGLSSVLISIPKH Trigger: ATGCTTGGGGATAGAAATCAGTACTGAGGACAATCCAAATATCAAGTACCTTTCTACTCCTGAAATCCCTCTTGCTTGTGTGTGTACTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS CAA 90 bp	CAAGCAAGAGGGATTTCAGGAGTAGAAAGGTACTTGATATTTGGATaGTCCTCAGTACTGATTTCTATCCCCAAGCATTTATCCACATTG	+
Preference number: 6 (lower is better) Translates to: QARGISGVERYLIFG*SSVLISIPKHLSTL Trigger: CAATGTGGATAAATGCTTGGGGATAGAAATCAGTACTGAGGACAATCCAAATATCAAGTACCTTTCTACTCCTGAAATCCCTCTTGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS TCA 72 bp	CTTCATTTGTCCTGTTTGTCTGAGAGAGTCTCCTGTTaGGTGAAAGTGACTTGTTTCTATTGTCTTGACCAT	+
Preference number: 6 (lower is better) Translates to: LHLSCLSERVSC*VKVTCFYCLDH Trigger: ATGGTCAAGACAATAGAAACAAGTCACTTTCACTCAACAGGAGACTCTCTCAGACAAACAGGACAAATGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS CCA 72 bp	AAGAGGGATTTCAGGAGTAGAAAGGTACTTGATATTTaGATTGTCCTCAGTACTGATTTCTATCCCCAAGCA	+
Preference number: 6 (lower is better) Translates to: KRDFRSRKVLDI*IVLSTDFYPQA Trigger: TGCTTGGGGATAGAAATCAGTACTGAGGACAATCCAAATATCAAGTACCTTTCTACTCCTGAAATCCCTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS TCA 72 bp	GTGAGTTCTACTATAACTTCATTTGTCCTGTTTGTCTaGGAGAGTCTCCTGTTGAGTGAAAGTGACTTGTTT	+
Preference number: 6 (lower is better) Translates to: VSSTITSFVLFV*ESLLLSESDLF Trigger: AAACAAGTCACTTTCACTCAACAGGAGACTCTCTCAGACAAACAGGACAAATGAAGTTATAGTAGAACTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080742.3
CDS CAA 72 bp	ACACAAGCAAGAGGGATTTCAGGAGTAGAAAGGTACTaGATATTTGGATTGTCCTCAGTACTGATTTCTATC	+
Preference number: 6 (lower is better) Translates to: TQARGISGVERY*IFGLSSVLISI Trigger: GATAGAAATCAGTACTGAGGACAATCCAAATATCAAGTACCTTTCTACTCCTGAAATCCCTCTTGCTTGTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080742.3

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