Pregenerated sensors for SVAL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014104Ensembl transcript IDs: ENSMUST00000014248.11, ENSMUST00000119995.2, ENSMUST00000120605.8
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGGGCAGGAAGTGTAAATaGCGTGAGCAGAAAGGTACT | + |
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Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWGRKCK*REQKGT Trigger: AGTACCTTTCTGCTCACGCCATTTACACTTCCTGCC...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR TCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGGAGCAGAAAGGTACTTaGTGCTTGGATTCATCACAG | + |
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Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWEQKGT*CLDSSQ Trigger: CTGTGATGAATCCAAGCATCAAGTACCTTTCTGCTC...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR CCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGACATATGCTCTTAGCTaGAACAACTTCTGCCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWTYALS*NNFCLP Trigger: GGGAAGGCAGAAGTTGTTCCAGCTAAGAGCATATGT...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR TCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGGATTCATCACAGTACTaGCTTTTACCACCATACATT | + |
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Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWDSSQY*LLPPYI Trigger: AATGTATGGTGGTAAAAGTCAGTACTGTGATGAATC...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR TCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGGTATTGTCAGAGACTTaGATATCCCAGAAGTATTTG | + |
|
Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWVLSET*ISQKYL Trigger: CAAATACTTCTGGGATATTCAAGTCTCTGACAATAC...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR GCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGAGTATTTGTTTGCACTaGAAAGGCAGGAAGTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWSICLH*KGRKCK Trigger: TTTACACTTCCTGCCTTTGCAGTGCAAACAAATACT...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR CCA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGTTTACCACCATACATTaGCCCACATTATTTTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: HPILFADRKEHSSSQIVWFTTIH*PTLFLT Trigger: GGTTAAAAATAATGTGGGCCAATGTATGGTGGTAAA...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS CCA 90 bp | AAGGCAGGAAGTGTAAATGGCGTGAGCAGAAAGGTACTTGATGCTTaGATTCATCACAGTACTGACTTTTACCACCATACATTGGCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: KAGSVNGVSRKVLDA*IHHSTDFYHHTLAH Trigger: GTGGGCCAATGTATGGTGGTAAAAGTCAGTACTGTGATGAATCCAAGCATCAAGTACCTTTCTGCTCACGCCATTTACACTTCCTGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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| CDS-3UTR CAA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGCCCAGAAGTATTTGTTaGCACTGCAAAGGCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: HPILFADRKEHSSSQIVWPRSIC*HCKGRK Trigger: CTTCCTGCCTTTGCAGTGCAAACAAATACTTCTGGG...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS-3UTR CAA 90 bp | CACCCTATTTTATTTGCTGACAGAAAAGAACACTCTTCTTCACAGATAGTTTGGATATCCCAGAAGTATTaGTTTGCACTGCAAAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: HPILFADRKEHSSSQIVWISQKY*FALQRQ Trigger: CTGCCTTTGCAGTGCAAACAAATACTTCTGGGATAT...CCAAACTATCTGTGAAGAAGAGTGTTCTTTTCTGTCAGCAAATAAAATAGGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120605.8 |
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| CDS TCA 72 bp | TCTGCCTTCCCTTGTAAGGCAGTATTGTCAGAGACTTaGATATCCCAGAAGTATTTGTTTGCACTGCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: SAFPCKAVLSET*ISQKYLFALQR Trigger: CCTTTGCAGTGCAAACAAATACTTCTGGGATATTCAAGTCTCTGACAATACTGCCTTACAAGGGAAGGCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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| CDS GCA 72 bp | CAGAGACTTGAATATCCCAGAAGTATTTGTTTGCACTaGAAAGGCAGGAAGTGTAAATGGCGTGAGCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: QRLEYPRSICLH*KGRKCKWREQK Trigger: TTTCTGCTCACGCCATTTACACTTCCTGCCTTTGCAGTGCAAACAAATACTTCTGGGATATTCAAGTCTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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| CDS GCA 72 bp | ATTGTCAGAGACTTGAATATCCCAGAAGTATTTGTTTaGACTGCAAAGGCAGGAAGTGTAAATGGCGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: IVRDLNIPEVFV*TAKAGSVNGVS Trigger: GCTCACGCCATTTACACTTCCTGCCTTTGCAGTGCAAACAAATACTTCTGGGATATTCAAGTCTCTGACAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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| CDS CCA 72 bp | AGTGTAAATGGCGTGAGCAGAAAGGTACTTGATGCTTaGATTCATCACAGTACTGACTTTTACCACCATACA | + |
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Preference number: 6 (lower is better) Translates to: SVNGVSRKVLDA*IHHSTDFYHHT Trigger: TGTATGGTGGTAAAAGTCAGTACTGTGATGAATCCAAGCATCAAGTACCTTTCTGCTCACGCCATTTACACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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| CDS CCA 72 bp | GGATTCATCACAGTACTGACTTTTACCACCATACATTaGCCCACATTATTTTTAACCTGGAGTGTTACTGTA | + |
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Preference number: 6 (lower is better) Translates to: GFITVLTFTTIH*PTLFLTWSVTV Trigger: TACAGTAACACTCCAGGTTAAAAATAATGTGGGCCAATGTATGGTGGTAAAAGTCAGTACTGTGATGAATCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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| CDS CAA 72 bp | TGGATTCATCACAGTACTGACTTTTACCACCATACATaGGCCCACATTATTTTTAACCTGGAGTGTTACTGT | + |
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Preference number: 6 (lower is better) Translates to: WIHHSTDFYHHT*AHIIFNLECYC Trigger: ACAGTAACACTCCAGGTTAAAAATAATGTGGGCCAATGTATGGTGGTAAAAGTCAGTACTGTGATGAATCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000014248.11 ENSMUST00000119995.2 ENSMUST00000120605.8 |
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