Pregenerated sensors for SVAL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029865

Ensembl transcript IDs: ENSMUST00000031898.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	CTACAGAAATTGATAGAAAAGATTATGTATTCCCTCAGGTGGTTTGGTGCCATGTTGTTCCTATTATCCTaGCCAGAGGCAATCTCCAGA	+
Preference number: 4 (lower is better) Translates to: LQKLIEKIMYSLRWFGAMLFLLS*PEAISR Trigger: TCTGGAGATTGCCTCTGGTCAGGATAATAGGAACAA...CATGGCACCAAACCACCTGAGGGAATACATAATCTTTTCTATCAATTTCTGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS-3UTR TCA 90 bp	TTTACTACAGAAATTGATAGAAAAGATTATGTATTCCCTCAGGTGGTTTGGTGCGATTGTCCTCAATACTaGTTTTCACCACCATGCATT	+
Preference number: 4 (lower is better) Translates to: FTTEIDRKDYVFPQVVWCDCPQY*FSPPCI Trigger: AATGCATGGTGGTGAAAATCAGTATTGAGGACAATC...GCACCAAACCACCTGAGGGAATACATAATCTTTTCTATCAATTTCTGTAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS-3UTR GCA 90 bp	ACAGAAATTGATAGAAAAGATTATGTATTCCCTCAGGTGGTTTGGTGCCATGGAAACTGTGAGTGTTACTaGAAATTCATTTGCCTTGTT	+
Preference number: 4 (lower is better) Translates to: TEIDRKDYVFPQVVWCHGNCECY*KFICLV Trigger: AACAAGGCAAATGAATTTGCAGTAACACTCACAGTT...TCCATGGCACCAAACCACCTGAGGGAATACATAATCTTTTCTATCAATTTCTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS-3UTR GCA 90 bp	CTACAGAAATTGATAGAAAAGATTATGTATTCCCTCAGGTGGTTTGGTGCCATGTGTTTACAGTACAAATaGAAGCAGTGTAAGTTGCTT	+
Preference number: 4 (lower is better) Translates to: LQKLIEKIMYSLRWFGAMCLQYK*KQCKLL Trigger: AAGCAACTTACACTGCTTGCATTTGTACTGTAAACA...CATGGCACCAAACCACCTGAGGGAATACATAATCTTTTCTATCAATTTCTGTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS-3UTR CAA 90 bp	ACTACAGAAATTGATAGAAAAGATTATGTATTCCCTCAGGTGGTTTGGTGCCATGAAGTGTGTAACAGCTaGGGGCTGGGAGAGAATTTG	+
Preference number: 5 (lower is better) Translates to: TTEIDRKDYVFPQVVWCHEVCNS*GLGENL Trigger: CAAATTCTCTCCCAGCCCCAAGCTGTTACACACTTC...ATGGCACCAAACCACCTGAGGGAATACATAATCTTTTCTATCAATTTCTGTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS TCA 90 bp	GAAGAAACTTTCAAATTTAGTGAAAGCAGATTGTTCCTATTATCCTaGCCAGAGGCAATCTCCAGAATTAAGCACAGAATCAGGAAGTGT	+
Preference number: 5 (lower is better) Translates to: EETFKFSESRLFLLS*PEAISRIKHRIRKC Trigger: ACACTTCCTGATTCTGTGCTTAATTCTGGAGATTGCCTCTGGTCAGGATAATAGGAACAATCTGCTTTCACTAAATTTGAAAGTTTCTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS GCA 90 bp	ATCCCAGAAGTAGTTGTTTACAGTACAAATGCAAGCAGTGTAAGTTaGTTTAGCAGAAAGATATTTGATGTTCGGATTGTCCTCAATACT	+
Preference number: 5 (lower is better) Translates to: IPEVVVYSTNASSVS*FSRKIFDVRIVLNT Trigger: AGTATTGAGGACAATCCGAACATCAAATATCTTTCTGCTAAAGCAACTTACACTGCTTGCATTTGTACTGTAAACAACTACTTCTGGGAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS TCA 72 bp	TTCAAATTTAGTGAAAGCAGATTGTTCCTATTATCCTaGCCAGAGGCAATCTCCAGAATTAAGCACAGAATC	+
Preference number: 6 (lower is better) Translates to: FKFSESRLFLLS*PEAISRIKHRI Trigger: GATTCTGTGCTTAATTCTGGAGATTGCCTCTGGTCAGGATAATAGGAACAATCTGCTTTCACTAAATTTGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031898.5
CDS CCA 72 bp	GATTTCACCTGTAACCGTCTCAACATAAGAAGTTACTaGAAATATGTTTTCACCATCAGGACATATCTCCTT	+
Preference number: 6 (lower is better) Translates to: DFTCNRLNIRSY*KYVFTIRTYLL Trigger: AAGGAGATATGTCCTGATGGTGAAAACATATTTCCAGTAACTTCTTATGTTGAGACGGTTACAGGTGAAATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031898.5