RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SVA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023289

Ensembl transcript IDs: ENSMUST00000024059.5, ENSMUST00000117406.8

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACAACCCAGCAGTCTCCTaGAGTAAGAATACAATAAGG +
Preference number: 4 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNNPAVS*SKNTIR
Trigger: CCTTATTGTATTCTTACTTCAGGAGACTGCTGGGTT...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR TCA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACGACCAGAAAGGAACTTaGTGTATCTCTCATGTTCAG +
Preference number: 4 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNDQKGT*CISHVQ
Trigger: CTGAACATGAGAGATACATCAAGTTCCTTTCTGGTC...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR TCA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTTTTCATATTCAGTGTaGGTGTGTAGTTACGGGGTT +
Preference number: 4 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNFSYSV*VCSYGV
Trigger: AACCCCGTAACTACACACTCACACTGAATATGAAAA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR GCA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTCTACCTCCTGGCATTaGTTCACGTTGTTTTTAACT +
Preference number: 4 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNSTSWH*FTLFLT
Trigger: AGTTAAAAACAACGTGAAGCAATGCCAGGAGGTAGA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CCA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTTTATTTCTACCTCCTaGCATTGCTTCACGTTGTTT +
Preference number: 4 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNFISTS*HCFTLF
Trigger: AAACAACGTGAAGCAATGCCAGGAGGTAGAAATAAA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CAA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTTCTACCTCCTGGCATaGCTTCACGTTGTTTTTAAC +
Preference number: 5 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNFYLLA*LHVVFN
Trigger: GTTAAAAACAACGTGAAGCAATGCCAGGAGGTAGAA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CAA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACGGACCAGAAAGGAACTaGATGTATCTCTCATGTTCA +
Preference number: 5 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNGPERN*MYLSCS
Trigger: TGAACATGAGAGATACATCAAGTTCCTTTCTGGTCC...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CAA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTATGACTGCTCCAGGTaGATAGAACTTTTGAAGAGA +
Preference number: 5 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNYDCSR*IELLKR
Trigger: TCTCTTCAAAAGTTCTATCAACCTGGAGCAGTCATA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CAA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTGGCATTGCTTCACGTaGTTTTTAACTGTCAGTTGT +
Preference number: 5 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNWHCFT*FLTVSC
Trigger: ACAACTGACAGTTAAAAACAACGTGAAGCAATGCCA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CAA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACTGCAAGTTTCAAAAGTaGATGGACCAGAAAGGAACT +
Preference number: 5 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNCKFQK*MDQKGT
Trigger: AGTTCCTTTCTGGTCCATCAACTTTTGAAACTTGCA...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS-3UTR CAA 90 bp CGCACACACACAATCCTCTCCAAGAGTACGTTAGTGATGTGGTTCTATTGCAACAGGTTGATAGAACTTTaGAAGAGAAGCCATGCTGTA +
Preference number: 5 (lower is better)
Translates to: RTHTILSKSTLVMWFYCNRLIEL*KRSHAV
Trigger: TACAGCATGGCTTCTCTTCAAAAGTTCTATCAACCT...GTTGCAATAGAACCACATCACTAACGTACTCTTGGAGAGGATTGTGTGTGTGCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117406.8
CDS CCA 90 bp GTAGTGGTTCGTCAGAGTCAGGACATTTGTTCTTATATGGCAGAATaGAGGCTGATAGTGTTAGGTAAGTGCTTTCAGAGACATATATAT +
Preference number: 5 (lower is better)
Translates to: VVVRQSQDICSYMAE*RLIVLGKCFQRHIY
Trigger: ATATATATGTCTCTGAAAGCACTTACCTAACACTATCAGCCTCCATTCTGCCATATAAGAACAAATGTCCTGACTCTGACGAACCACTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS CCA 90 bp AGGAACTTGATGTATCTCTCATGTTCAGTATTTATTTCTACCTCCTaGCATTGCTTCACGTTGTTTTTAACTGTCAGTTGTACTCGAAAT +
Preference number: 5 (lower is better)
Translates to: RNLMYLSCSVFISTS*HCFTLFLTVSCTRN
Trigger: ATTTCGAGTACAACTGACAGTTAAAAACAACGTGAAGCAATGCCAGGAGGTAGAAATAAATACTGAACATGAGAGATACATCAAGTTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS CCA 72 bp CGTCAGAGTCAGGACATTTGTTCTTATATGGCAGAATaGAGGCTGATAGTGTTAGGTAAGTGCTTTCAGAGA +
Preference number: 6 (lower is better)
Translates to: RQSQDICSYMAE*RLIVLGKCFQR
Trigger: TCTCTGAAAGCACTTACCTAACACTATCAGCCTCCATTCTGCCATATAAGAACAAATGTCCTGACTCTGACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS TCA 72 bp TTGTGTAAGCCATGGTACCAAAACCCAGCAGTCTCCTaGAGTAAGAATACAATAAGGAGATATATGACTGCT +
Preference number: 6 (lower is better)
Translates to: LCKPWYQNPAVS*SKNTIRRYMTA
Trigger: AGCAGTCATATATCTCCTTATTGTATTCTTACTTCAGGAGACTGCTGGGTTTTGGTACCATGGCTTACACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS CAA 90 bp ATGGTACATATGCAAGTTTCAAAAGTTGATGGACCAGAAAGGAACTaGATGTATCTCTCATGTTCAGTATTTATTTCTACCTCCTGGCAT +
Preference number: 6 (lower is better)
Translates to: MVHMQVSKVDGPERN*MYLSCSVFISTSWH
Trigger: ATGCCAGGAGGTAGAAATAAATACTGAACATGAGAGATACATCAAGTTCCTTTCTGGTCCATCAACTTTTGAAACTTGCATATGTACCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS CAA 90 bp CTTGATGTATCTCTCATGTTCAGTATTTATTTCTACCTCCTGGCATaGCTTCACGTTGTTTTTAACTGTCAGTTGTACTCGAAATTCATT +
Preference number: 6 (lower is better)
Translates to: LDVSLMFSIYFYLLA*LHVVFNCQLYSKFI
Trigger: AATGAATTTCGAGTACAACTGACAGTTAAAAACAACGTGAAGCAATGCCAGGAGGTAGAAATAAATACTGAACATGAGAGATACATCAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS CAA 72 bp TCAGTATTTATTTCTACCTCCTGGCATTGCTTCACGTaGTTTTTAACTGTCAGTTGTACTCGAAATTCATTC +
Preference number: 6 (lower is better)
Translates to: SVFISTSWHCFT*FLTVSCTRNSF
Trigger: GAATGAATTTCGAGTACAACTGACAGTTAAAAACAACGTGAAGCAATGCCAGGAGGTAGAAATAAATACTGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS TCA 72 bp TGCAAGTTTCAAAAGTTGATGGACCAGAAAGGAACTTaGTGTATCTCTCATGTTCAGTATTTATTTCTACCT +
Preference number: 6 (lower is better)
Translates to: CKFQKLMDQKGT*CISHVQYLFLP
Trigger: AGGTAGAAATAAATACTGAACATGAGAGATACATCAAGTTCCTTTCTGGTCCATCAACTTTTGAAACTTGCA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8
CDS CAA 72 bp ATGCAAGTTTCAAAAGTTGATGGACCAGAAAGGAACTaGATGTATCTCTCATGTTCAGTATTTATTTCTACC +
Preference number: 6 (lower is better)
Translates to: MQVSKVDGPERN*MYLSCSVFIST
Trigger: GGTAGAAATAAATACTGAACATGAGAGATACATCAAGTTCCTTTCTGGTCCATCAACTTTTGAAACTTGCAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024059.5
ENSMUST00000117406.8