RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SV2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053025

Ensembl transcript IDs: ENSMUST00000085164.7, ENSMUST00000165175.8, ENSMUST00000206344.2, ENSMUST00000207001.2

Found 302 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTATCCTGTAGACAGTaGGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGAT +
Preference number: 1 (lower is better)
Translates to: KSISPSVLSAVSCRQ*EAGGVAVLECPEKD
Trigger: ATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTCACTGTCTACAGGATACCGCGGACAGCACGGAAGGAGAAATGGACTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR GCA 90 bp GAAGCAGCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTaGAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATGGATGG +
Preference number: 1 (lower is better)
Translates to: EAAKYHGQITLHERG*RPWLHPSHIPCDGW
Trigger: CCATCCATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CCA 90 bp GGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATGGATaGACGGGAATTGCCCTTGGTTGGTTAGGCAAACAGGTTAAGGAG +
Preference number: 1 (lower is better)
Translates to: GCRPWLHPSHIPCDG*TGIALGWLGKQVKE
Trigger: CTCCTTAACCTGTTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR TCA 90 bp TGCTTACTGTGTGTGTTTACTGGAGTGTCCTCTCCCTGCCTGGGATaGAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGAT +
Preference number: 1 (lower is better)
Translates to: CLLCVFTGVSSPCLG*RDLKLSTQLWDPKD
Trigger: ATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAGGACACTCCAGTAAACACACACAGTAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CCA 90 bp AAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGACCATaGCTGCATCCTTCTCACATCCCGTGTGATGGATGGACGGGAATT +
Preference number: 1 (lower is better)
Translates to: KYHGQITLHERGCRP*LHPSHIPCDGWTGI
Trigger: AATTCCCGTCCATCCATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CCA 90 bp CCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTaGCTTGCCAAGTACATCCTCCGGACAGCAAGCAAGATGCTACCC +
Preference number: 1 (lower is better)
Translates to: PYQFEEKFPGKGNGT*LAKYILRTASKMLP
Trigger: GGGTAGCATCTTGCTTGCTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAAATTGGTAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CCA 90 bp TCCCAGACCTGTTTGAAAATGGTCATGAACCTGACCAGCCAGCGCTaGTACCAAGTTCCGGTTGAGCTCTGTATCTCAATGAATTCATCC +
Preference number: 1 (lower is better)
Translates to: SQTCLKMVMNLTSQR*YQVPVELCISMNSS
Trigger: GGATGAATTCATTGAGATACAGAGCTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAGGTTCATGACCATTTTCAAACAGGTCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR TCA 90 bp CAGAAATTATGTTCCCAGGCAAGACAGAGAGGCTGCCGAGGAAGCTaGCGAGGTAAATCAGAAAATCATTGTCCTCTTCAAAGTCCATGT +
Preference number: 1 (lower is better)
Translates to: QKLCSQARQRGCRGS*RGKSENHCPLQSPC
Trigger: ACATGGACTTTGAAGAGGACAATGATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCCTCTCTGTCTTGCCTGGGAACATAATTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR GCA 90 bp TACCAAGTTCCGGTTGAGCTCTGTATCTCAATGAATTCATCCATTTaGTTGGGAGTTTTGATGTGGGAAACCGTGAACACCTTTTCCGGG +
Preference number: 1 (lower is better)
Translates to: YQVPVELCISMNSSI*LGVLMWETVNTFSG
Trigger: CCCGGAAAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAAGCAAATGGATGAATTCATTGAGATACAGAGCTCAACCGGAACTTGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 90 bp ACTCTTTCCCACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATaGCTTGAACTGGCCTGGCATCTAAGTATTTCCACAGAACTGAGA +
Preference number: 1 (lower is better)
Translates to: TLSHCQLIFQRTRQR*LELAWHLSISTELR
Trigger: TCTCAGTTCTGTGGAAATACTTAGATGCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGTGGGAAAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CCA 90 bp ATCTTTATGAACTTATCGTTCACAAGCTTCCCATGTTGGTGGATCTaGTTTTCCATGGTAAAGTTGATCGTGGCGCCATGCACGTGCTCA +
Preference number: 1 (lower is better)
Translates to: IFMNLSFTSFPCWWI*FSMVKLIVAPCTCS
Trigger: TGAGCACGTGCATGGCGCCACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR TCA 90 bp AAGAGGTGGGGACCAGAGAAGCAGAGTAAACATGTTAGCCACACTTaGAAATGGGAAGTTCTCAAAGATTTCACTCTTTCCCACTGCCAA +
Preference number: 1 (lower is better)
Translates to: KRWGPEKQSKHVSHT*KWEVLKDFTLSHCQ
Trigger: TTGGCAGTGGGAAAGAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCTGCTTCTCTGGTCCCCACCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR GCA 90 bp AGAAAATCATTGTCCTCTTCAAAGTCCATGTGGCAGCCCTCCTTCTaGTCCAGAAAGGTGGAATTGATAAACCGACAGTTGATGAACTTG +
Preference number: 1 (lower is better)
Translates to: RKSLSSSKSMWQPSF*SRKVELINRQLMNL
Trigger: CAAGTTCATCAACTGTCGGTTTATCAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAATGATTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 90 bp AAATACATCTTTATGAACTTATCGTTCACAAGCTTCCCATGTTGGTaGATCTGGTTTTCCATGGTAAAGTTGATCGTGGCGCCATGCACG +
Preference number: 1 (lower is better)
Translates to: KYIFMNLSFTSFPCW*IWFSMVKLIVAPCT
Trigger: CGTGCATGGCGCCACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGATGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 90 bp TTAAAATACATCTTTATGAACTTATCGTTCACAAGCTTCCCATGTTaGTGGATCTGGTTTTCCATGGTAAAGTTGATCGTGGCGCCATGC +
Preference number: 1 (lower is better)
Translates to: LKYIFMNLSFTSFPC*WIWFSMVKLIVAPC
Trigger: GCATGGCGCCACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGATGTATTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR TCA 90 bp GTAAATGTGGATTCTAACTGTCTCGTACATTTCTTGAGTGGTAGCTaGGCACTGAGGTCTATTATCCCATTAAAGAACACTGTTATGAGG +
Preference number: 1 (lower is better)
Translates to: VNVDSNCLVHFLSGS*ALRSIIPLKNTVMR
Trigger: CCTCATAACAGTGTTCTTTAATGGGATAATAGACCTCAGTGCTCAGCTACCACTCAAGAAATGTACGAGACAGTTAGAATCCACATTTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CCA 90 bp CTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTaGAGCAATGAAGAAACGAATGTATCTCATGCCTTTTATTTCCTA +
Preference number: 1 (lower is better)
Translates to: LSTFKFQPGSQKKLP*SNEETNVSHAFYFL
Trigger: TAGGAAATAAAAGGCATGAGATACATTCGTTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR TCA 90 bp ATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATaGAGAAACGAATGTATCTCATGCCTTTTATTTCCTAATGTGCAT +
Preference number: 1 (lower is better)
Translates to: IQVPTWISEKASLEQ*RNECISCLLFPNVH
Trigger: ATGCACATTAGGAAATAAAAGGCATGAGATACATTCGTTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCGTATCCTGTAGACAGTaGGAGGCAGGAGGCGTGGCT +
Preference number: 2 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSVSCRQ*EAGGVA
Trigger: AGCCACGCCTCCTGCCTCTCACTGTCTACAGGATAC...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR TCA 90 bp TCACATCCAGAGCATTCCAGGCTGCAATGCTGGTCCCACAGAACAGGCATTGCCAGCAGACTGCAGAGATaGGCATGGAGCCGCCAATCA +
Preference number: 2 (lower is better)
Translates to: SHPEHSRLQCWSHRTGIASRLQR*AWSRQS
Trigger: TGATTGGCGGCTCCATGCTCATCTCTGCAGTCTGCT...GGCAATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATGCTCTGGATGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR GCA 90 bp ATGCTGGTCCCACAGAACAGGCATTGCCAGCCGATCATCGCAGACTCGCTGTTGTGGCAGCCCTCCTTCTaGTCCAGAAAGGTGGAATTG +
Preference number: 2 (lower is better)
Translates to: MLVPQNRHCQPIIADSLLWQPSF*SRKVEL
Trigger: CAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCA...CAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CCA 90 bp TTGTCCTCTTCAAAGTCCATGTGGCAGCCCTCCTTCTGCTCCAGAAAGGTGGAACTGACCAGCCAGCGCTaGTACCAAGTTCCGGTTGAG +
Preference number: 2 (lower is better)
Translates to: LSSSKSMWQPSFCSRKVELTSQR*YQVPVE
Trigger: CTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAG...TTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATGAGGCGTGGCTGTGCTaGAGTGTCCTGAAAAAGATC +
Preference number: 2 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDEAWLC*SVLKKI
Trigger: GATCTTTTTCAGGACACTCCAGCACAGCCACGCCTC...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGTCCCAAGGATGGTTCTaGGCACCCCTAGTCAATCAC +
Preference number: 2 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQSQGWF*APLVNH
Trigger: GTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGA...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR TCA 90 bp GAAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTCTCCCTGCCTGGGATaGAGAGACCTGAAGCTAAGC +
Preference number: 2 (lower is better)
Translates to: ETSIRRSHNTVETAESIGSPCLG*RDLKLS
Trigger: GCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGA...GCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp GCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGACCATGGCTGTCCTGCGACCTTGAATaGAGAGTCCTCCCCAAATAT +
Preference number: 2 (lower is better)
Translates to: AKYHGQITLHERGCRPWLSCDLE*RVLPKY
Trigger: ATATTTGGGGAGGACTCTCCATTCAAGGTCGCAGGA...CAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCGTATCCTGTAGACAGTaGGAGGCAGGAGGCGTGGCT +
Preference number: 2 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSVSCRQ*EAGGVA
Trigger: AGCCACGCCTCCTGCCTCTCACTGTCTACAGGATAC...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR TCA 90 bp GCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGACCATGGCTGCCTGAGTTTCACAAATaGGCAACACAGGAGAGAGAA +
Preference number: 2 (lower is better)
Translates to: AKYHGQITLHERGCRPWLPEFHK*ATQERE
Trigger: TTCTCTCTCCTGTGTTGCTCATTTGTGAAACTCAGG...CAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAATTATCACATCAGACCTaGTGCATCTTCCTTCCCTGG +
Preference number: 2 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKLSHQT*CIFLPW
Trigger: CCAGGGAAGGAAGATGCATCAGGTCTGATGTGATAA...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR GCA 90 bp GCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGACCATGGCTGATCACCTCTTCGTTATaGAAAGTTCAGGATGCTTGG +
Preference number: 2 (lower is better)
Translates to: AKYHGQITLHERGCRPWLITSSL*KVQDAW
Trigger: CCAAGCATCCTGAACTTTGCATAACGAAGAGGTGAT...CAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp TCACATCCAGAGCATTCCAGGCTGCAATGCTGGTCCCACAGAACAGGCATTGCCTTGGGAGTTTTGATGTaGGAAACCGTGAACACCTTT +
Preference number: 2 (lower is better)
Translates to: SHPEHSRLQCWSHRTGIALGVLM*ETVNTF
Trigger: AAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAA...GGCAATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATGCTCTGGATGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CAA 90 bp ACAGCAAGCAAGATGCTACCCATTCGCACCAAGTTTCCTGCGACCTaGAATGGAGAGTCCTCCCCAAATATGGCTAAAATGTTGGCAACC +
Preference number: 2 (lower is better)
Translates to: TASKMLPIRTKFPAT*NGESSPNMAKMLAT
Trigger: GGTTGCCAACATTTTAGCCATATTTGGGGAGGACTCTCCATTCAAGGTCGCAGGAAACTTGGTGCGAATGGGTAGCATCTTGCTTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR TCA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCTGTGCTGGAGTGTCCTaGAAAAGATCTTCCCATCTG +
Preference number: 2 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGCAGVS*KRSSHL
Trigger: CAGATGGGAAGATCTTTTTCAGGACACTCCAGCACA...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp CCATTGCAGAGGGTACTGATGAACAAAAGCCACTCCCTCAGCCTAGCCTCCAGAAACAACCTATGGTCCTaGGTTTCACAAATGAGCAAC +
Preference number: 2 (lower is better)
Translates to: PLQRVLMNKSHSLSLASRNNLWS*VSQMSN
Trigger: GTTGCTCATTTGTGAAACTCAGGACCATAGGTTGTT...TCTGGAGGCTAGGCTGAGGGAGTGGCTTTTGTTCATCAGTACCCTCTGCAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCATCCCGTGTGATGGATaGACGGGAATTGCCCTTGGT +
Preference number: 2 (lower is better)
Translates to: TLISSGVTASYEAAKYHGIPCDG*TGIALG
Trigger: ACCAAGGGCAATTCCCGTCCATCCATCACACGGGAT...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCACTGTGTGTGTTTACTaGAGTGTCCTCTCCCTGCCT +
Preference number: 2 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSTVCVY*SVLSLP
Trigger: AGGCAGGGAGAGGACACTCCAGTAAACACACACAGT...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR CCA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAAATCTGCTAGGTCACTaGGCTCCCAGAAGCTGCATG +
Preference number: 2 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKNLLGH*APRSCM
Trigger: CATGCAGCTTCTGGGAGCCCAGTGACCTAGCAGATT...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR CCA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCGACGGGAATTGCCCTTaGTTGGTTAGGCAAACAGGT +
Preference number: 2 (lower is better)
Translates to: TLISSGVTASYEAAKYHGDGNCP*LVRQTG
Trigger: ACCTGTTTGCCTAACCAACCAAGGGCAATTCCCGTC...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAAAAAGTTCAGGATGCTTaGGAAGAAAAGTCCGTCTAT +
Preference number: 2 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKKVQDA*EEKSVY
Trigger: ATAGACGGACTTTTCTTCCCAAGCATCCTGAACTTT...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATCAGAAAAAGCTTCCTTaGAGCAATGAAGAAACGAAT +
Preference number: 2 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDQKKLP*SNEETN
Trigger: ATTCGTTTCTTCATTGCTCCAAGGAAGCTTTTTCTG...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCCCTGAGTTTCACAAATaGGCAACACAGGAGAGAGAA +
Preference number: 2 (lower is better)
Translates to: TLISSGVTASYEAAKYHGPEFHK*ATQERE
Trigger: TTCTCTCTCCTGTGTTGCTCATTTGTGAAACTCAGG...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp ATGTTGGTGGATCTGGTTTTCCATGGTAAAGTTGATCGTGGCGCCATGCACGTGAGCTCTGTATCTCAATaGATTCATCCATTTGCTTGG +
Preference number: 2 (lower is better)
Translates to: MLVDLVFHGKVDRGAMHVSSVSQ*IHPFAW
Trigger: CCAAGCAAATGGATGAATTCATTGAGATACAGAGCT...CACGTGCATGGCGCCACGATCAACTTTACCATGGAAAACCAGATCCACCAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR GCA 90 bp CCATTGCAGAGGGTACTGATGAACAAAAGCCACTCCCTCAGCCTAGCCTCCAGATTTTATTTCCTAATGTaGATGCTAATGGCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: PLQRVLMNKSHSLSLASRFYFLM*MLMACF
Trigger: GAAACAGGCCATTAGCATGCACATTAGGAAATAAAA...TCTGGAGGCTAGGCTGAGGGAGTGGCTTTTGTTCATCAGTACCCTCTGCAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAAGAGGCGTGGCTGTGCTaGAGTGTCCTGAAAAAGATC +
Preference number: 2 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKEAWLC*SVLKKI
Trigger: GATCTTTTTCAGGACACTCCAGCACAGCCACGCCTC...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp GAAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCAAAGTTCAGGATGCTTaGGAAGAAAAGTCCGTCTAT +
Preference number: 2 (lower is better)
Translates to: ETSIRRSHNTVETAESIGKVQDA*EEKSVY
Trigger: ATAGACGGACTTTTCTTCCCAAGCATCCTGAACTTT...GCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp AGTTATGAAGCAGCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCATTCAAGTTCCAACCTaGATCTCAGAAAAAGCTTCC +
Preference number: 2 (lower is better)
Translates to: SYEAAKYHGQITLHERGCIQVPT*ISEKAS
Trigger: GGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAAT...GCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTCATAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCAGTCCTCCCCAAATATaGCTAAAATGTTGGCAACCT +
Preference number: 2 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSSPPQI*LKCWQP
Trigger: AGGTTGCCAACATTTTAGCCATATTTGGGGAGGACT...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 90 bp AAAACAAAAGCTCAGAAACCAGCATCAGGAGATCCCACAACACAGTaGAGACTGCTGAAAGTATCGGCTCCCAAACAAGCCATCATAAAA +
Preference number: 2 (lower is better)
Translates to: KTKAQKPASGDPTTQ*RLLKVSAPKQAIIK
Trigger: TTTTATGATGGCTTGTTTGGGAGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTTCTGAGCTTTTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTGAAGAACTCACATTTTaGAGAACTGTGGTTACCTTT +
Preference number: 2 (lower is better)
Translates to: KPASGDPTTQLRLLKVSAEELTF*RTVVTF
Trigger: AAAGGTAACCACAGTTCTTCAAAATGTGAGTTCTTC...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR GCA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAAATGCAAAGTTCAGGATaGTTGGGAAGAAAAGTCCGT +
Preference number: 2 (lower is better)
Translates to: PFHIQVPTWISEKASLEQMQSSG*LGRKVR
Trigger: ACGGACTTTTCTTCCCAAGCATCCTGAACTTTGCAT...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGGAGGCGTGGCTGTGCTaGAGTGTCCTGAAAAAGATC +
Preference number: 2 (lower is better)
Translates to: ILLKGWVFLYQSILKATVEAWLC*SVLKKI
Trigger: GATCTTTTTCAGGACACTCCAGCACAGCCACGCCTC...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR TCA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCGAAGAACTCACATTTTaGAGAACTGTGGTTACCTTT +
Preference number: 2 (lower is better)
Translates to: TLISSGVTASYEAAKYHGEELTF*RTVVTF
Trigger: AAAGGTAACCACAGTTCTTCAAAATGTGAGTTCTTC...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CCA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTAGGACTAGGCAAAGATaGCTTGAACTGGCCTGGCAT +
Preference number: 2 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPRTRQR*LELAWH
Trigger: ATGCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCT...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR TCA 90 bp AAGCTTCCTTGGAGCAATGAAGAAACGAATGTATCTCATGCCTTTTATTTCCTATGTGCTGGAGTGTCCTaGAAAAGATCTTCCCATCTG +
Preference number: 2 (lower is better)
Translates to: KLPWSNEETNVSHAFYFLCAGVS*KRSSHL
Trigger: CAGATGGGAAGATCTTTTTCAGGACACTCCAGCACA...TAGGAAATAAAAGGCATGAGATACATTCGTTTCTTCATTGCTCCAAGGAAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR GCA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGTGATACTTTCAAATaGAAATACGTAGTCTGCTCT +
Preference number: 2 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKGDTFK*KYVVCS
Trigger: AGAGCAGACTACGTATTTGCATTTGAAAGTATCACC...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR GCA 90 bp GTAGAAGGTGGTCGATTCGATGGTGCAGTTCTTGAAATACGTATCTGTGGATGTATGAATTCATCCATTTaGTTGGGAGTTTTGATGTGG +
Preference number: 2 (lower is better)
Translates to: VEGGRFDGAVLEIRICGCMNSSI*LGVLMW
Trigger: CCACATCAAAACTCCCAAGCAAATGGATGAATTCAT...ACATCCACAGATACGTATTTCAAGAACTGCACCATCGAATCGACCACCTTCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAAAGTCCTCCCCAAATATaGCTAAAATGTTGGCAACCT +
Preference number: 2 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKSPPQI*LKCWQP
Trigger: AGGTTGCCAACATTTTAGCCATATTTGGGGAGGACT...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CAA 90 bp TTTAAAATACATCTTTATGAACTTATCGTTCACAAGCTTCCCATGTaGGTGGATCTGGTTTTCCATGGTAAAGTTGATCGTGGCGCCATG +
Preference number: 2 (lower is better)
Translates to: FKIHLYELIVHKLPM*VDLVFHGKVDRGAM
Trigger: CATGGCGCCACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGATGTATTTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAACATTTTGAAGAACTGTaGTTACCTTTCCCCATCCTT +
Preference number: 2 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKHFEEL*LPFPIL
Trigger: AAGGATGGGGAAAGGTAACCACAGTTCTTCAAAATG...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CAA 90 bp GCAAAGTTCAGGATGCTTGGGAAGAAAAGTCCGTCTATATACATTTaGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCT +
Preference number: 2 (lower is better)
Translates to: AKFRMLGKKSPSIYI*LKGWVFLYQSILKA
Trigger: AGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAATGTATATAGACGGACTTTTCTTCCCAAGCATCCTGAACTTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR GCA 90 bp AGAGTAAACATGTTAGCCACACTTGAAAATGGGAAGTTCTCAAAGATTTCACTCATGCAAAGTTCAGGATaGTTGGGAAGAAAAGTCCGT +
Preference number: 2 (lower is better)
Translates to: RVNMLATLENGKFSKISLMQSSG*LGRKVR
Trigger: ACGGACTTTTCTTCCCAAGCATCCTGAACTTTGCAT...GAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR GCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAATGCAAAGTTCAGGATaGTTGGGAAGAAAAGTCCGT +
Preference number: 2 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKMQSSG*LGRKVR
Trigger: ACGGACTTTTCTTCCCAAGCATCCTGAACTTTGCAT...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR TCA 72 bp TCTCCTTCCGTGCTGTCCGCGGTATCCTGTAGACAGTaGGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCT +
Preference number: 3 (lower is better)
Translates to: SPSVLSAVSCRQ*EAGGVAVLECP
Trigger: AGGACACTCCAGCACAGCCACGCCTCCTGCCTCTCACTGTCTACAGGATACCGCGGACAGCACGGAAGGAGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CCA 72 bp CCGCGGTATCCTGTAGACAGTGAGAGGCAGGAGGCGTaGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCA +
Preference number: 3 (lower is better)
Translates to: PRYPVDSERQEA*LCWSVLKKIFP
Trigger: TGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTCACTGTCTACAGGATACCGCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CCA 72 bp GACCCCACTCCCCACTATGACAATCTGCTAGGTCACTaGGCTCCCAGAAGCTGCATGGAGGAGCTTAAGTGG +
Preference number: 3 (lower is better)
Translates to: DPTPHYDNLLGH*APRSCMEELKW
Trigger: CCACTTAAGCTCCTCCATGCAGCTTCTGGGAGCCCAGTGACCTAGCAGATTGTCATAGTGGGGAGTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR GCA 72 bp TTCCAGGCTGCAATGCTGGTCCCACAGAACAGGCATTaGCAGCCGATCATCGCAGACTCGCTGTTGCCAAAA +
Preference number: 3 (lower is better)
Translates to: FQAAMLVPQNRH*QPIIADSLLPK
Trigger: TTTTGGCAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CAA 90 bp ATGCTGGTCCCACAGAACAGGCATTGCCAGCCGATCATCGCAGACTCGCTGTTGGAGCCGCCAATCATCTaGAGTCTTCCAATTCTGTCC +
Preference number: 3 (lower is better)
Translates to: MLVPQNRHCQPIIADSLLEPPII*SLPILS
Trigger: GGACAGAATTGGAAGACTCAAGATGATTGGCGGCTC...CAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CAA 90 bp TGCAATGCTGGTCCCACAGAACAGGCATTGCCAGCCGATCATCGCAGACTCGCTCACAAGCTTCCCATGTaGGTGGATCTGGTTTTCCAT +
Preference number: 3 (lower is better)
Translates to: CNAGPTEQALPADHRRLAHKLPM*VDLVFH
Trigger: ATGGAAAACCAGATCCACCAACATGGGAAGCTTGTG...AGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR GCA 72 bp TATCCTGTAGACAGTGAGAGGCAGGAGGCGTGGCTGTaGTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTC +
Preference number: 3 (lower is better)
Translates to: YPVDSERQEAWL*WSVLKKIFPSV
Trigger: GACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTCACTGTCTACAGGATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CCA 72 bp CCTGTAGACAGTGAGAGGCAGGAGGCGTGGCTGTGCTaGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTT +
Preference number: 3 (lower is better)
Translates to: PVDSERQEAWLC*SVLKKIFPSVF
Trigger: AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTCACTGTCTACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR CAA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATGCTCTGTCTCTACCATaGCAGAGGGTACTGATGAAC +
Preference number: 3 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDALSLP*QRVLMN
Trigger: GTTCATCAGTACCCTCTGCAATGGTAGAGACAGAGC...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CAA 90 bp GTCATGAACCTGACCAGCCAGCGCTGGTACCAAGTTCCGGTTGAGCTCTGTATCATTTGCTTGGGAGTTTaGATGTGGGAAACCGTGAAC +
Preference number: 3 (lower is better)
Translates to: VMNLTSQRWYQVPVELCIICLGV*MWETVN
Trigger: GTTCACGGTTTCCCACATCAAAACTCCCAAGCAAAT...GATACAGAGCTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAGGTTCATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CAA 90 bp ATGCTGGTCCCACAGAACAGGCATTGCCAGCCGATCATCGCAGACTCGCTGTTGAATTCATCCATTTGCTaGGGAGTTTTGATGTGGGAA +
Preference number: 3 (lower is better)
Translates to: MLVPQNRHCQPIIADSLLNSSIC*GVLMWE
Trigger: TTCCCACATCAAAACTCCCAAGCAAATGGATGAATT...CAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 72 bp AGGAGCATATACTCCTTGCTTACTGTGTGTGTTTACTaGAGTGTCCTCTCCCTGCCTGGGATGAAGAGACCT +
Preference number: 3 (lower is better)
Translates to: RSIYSLLTVCVY*SVLSLPGMKRP
Trigger: AGGTCTCTTCATCCCAGGCAGGGAGAGGACACTCCAGTAAACACACACAGTAAGCAAGGAGTATATGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR TCA 72 bp TGTTCCCAGGCAAGACAGAGAGGCTGCCGAGGAAGCTaGCGAGGTAAATCAGAAAATCATTGTCCTCTTCAA +
Preference number: 3 (lower is better)
Translates to: CSQARQRGCRGS*RGKSENHCPLQ
Trigger: TTGAAGAGGACAATGATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCCTCTCTGTCTTGCCTGGGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR GCA 72 bp TTGTCCTCTTCAAAGTCCATGTGGCAGCCCTCCTTCTaGTCCAGAAAGGTGGAATTGATAAACCGACAGTTG +
Preference number: 3 (lower is better)
Translates to: LSSSKSMWQPSF*SRKVELINRQL
Trigger: CAACTGTCGGTTTATCAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 72 bp TGTTTGAAAATGGTCATGAACCTGACCAGCCAGCGCTaGTACCAAGTTCCGGTTGAGCTCTGTATCTCAATG +
Preference number: 3 (lower is better)
Translates to: CLKMVMNLTSQR*YQVPVELCISM
Trigger: CATTGAGATACAGAGCTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAGGTTCATGACCATTTTCAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR-3UTR CAA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCAATATGGCTAAAATGTaGGCAACCTTAGCAGCCACC +
Preference number: 3 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGNMAKM*ATLAAT
Trigger: GGTGGCTGCTAAGGTTGCCAACATTTTAGCCATATT...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR TCA 72 bp CAGCATCAAACAACCTATGGTCCTGAGTTTCACAAATaGGCAACACAGGAGAGAGAAGTACCTGCCCTACCA +
Preference number: 3 (lower is better)
Translates to: QHQTTYGPEFHK*ATQEREVPALP
Trigger: TGGTAGGGCAGGTACTTCTCTCTCCTGTGTTGCTCATTTGTGAAACTCAGGACCATAGGTTGTTTGATGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR-3UTR CAA 90 bp TTGTCCTCTTCAAAGTCCATGTGGCAGCCCTCCTTCTGCTCCAGAAAGGTGGAAAATGAATTCATCCATTaGCTTGGGAGTTTTGATGTG +
Preference number: 3 (lower is better)
Translates to: LSSSKSMWQPSFCSRKVENEFIH*LGSFDV
Trigger: CACATCAAAACTCCCAAGCAAATGGATGAATTCATT...TTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR TCA 72 bp AGACACACTTATCTCATCAGGAGTGACAGCAAGTTATaGAGCAGCCAAGTACCATGGCCAGATAACCCTTCA +
Preference number: 3 (lower is better)
Translates to: RHTYLIRSDSKL*SSQVPWPDNPS
Trigger: TGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR GCA 72 bp ATGATAGGTGATACTTTCAAATGCAAATACGTAGTCTaGTCTCTGAGCCCAGTATGTGTTGACCCCACTCCC +
Preference number: 3 (lower is better)
Translates to: MIGDTFKCKYVV*SLSPVCVDPTP
Trigger: GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTTGAAAGTATCACCTATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR GCA 72 bp GAAACGAATGTATCTCATGCCTTTTATTTCCTAATGTaGATGCTAATGGCCTGTTTCGAACGCCCCGAGCCA +
Preference number: 3 (lower is better)
Translates to: ETNVSHAFYFLM*MLMACFERPEP
Trigger: TGGCTCGGGGCGTTCGAAACAGGCCATTAGCATGCACATTAGGAAATAAAAGGCATGAGATACATTCGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR GCA 72 bp CCGGTTGAGCTCTGTATCTCAATGAATTCATCCATTTaGTTGGGAGTTTTGATGTGGGAAACCGTGAACACC +
Preference number: 3 (lower is better)
Translates to: PVELCISMNSSI*LGVLMWETVNT
Trigger: GGTGTTCACGGTTTCCCACATCAAAACTCCCAAGCAAATGGATGAATTCATTGAGATACAGAGCTCAACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 72 bp TTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTaGCATCTAAGTATTTCCACAGAACTGAGAAAACAC +
Preference number: 3 (lower is better)
Translates to: FQRTRQRWLELA*HLSISTELRKH
Trigger: GTGTTTTCTCAGTTCTGTGGAAATACTTAGATGCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CCA 72 bp CACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATaGCTTGAACTGGCCTGGCATCTAAGTATTTCCACA +
Preference number: 3 (lower is better)
Translates to: HCQLIFQRTRQR*LELAWHLSIST
Trigger: TGTGGAAATACTTAGATGCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR GCA 72 bp GTTTCACAAATGAGCAACACAGGAGAGAGAAGTACCTaGCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAG +
Preference number: 3 (lower is better)
Translates to: VSQMSNTGERST*PTNLKKSSQVK
Trigger: CTTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTGTTGCTCATTTGTGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CCA 72 bp TTTATGAACTTATCGTTCACAAGCTTCCCATGTTGGTaGATCTGGTTTTCCATGGTAAAGTTGATCGTGGCG +
Preference number: 3 (lower is better)
Translates to: FMNLSFTSFPCW*IWFSMVKLIVA
Trigger: CGCCACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR TCA 72 bp GGACCAGAGAAGCAGAGTAAACATGTTAGCCACACTTaGAAATGGGAAGTTCTCAAAGATTTCACTCTTTCC +
Preference number: 3 (lower is better)
Translates to: GPEKQSKHVSHT*KWEVLKDFTLS
Trigger: GGAAAGAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCTGCTTCTCTGGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR GCA 72 bp AAATGGGAAGTTCTCAAAGATTTCACTCTTTCCCACTaGCAACTTATATTCCAGAGGACTAGGCAAAGATGG +
Preference number: 3 (lower is better)
Translates to: KWEVLKDFTLSH*QLIFQRTRQRW
Trigger: CCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGTGGGAAAGAGTGAAATCTTTGAGAACTTCCCATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR-3UTR CAA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTACCTGCCCTACCAATTaGAAGAAAAGTTCCCAGGTA +
Preference number: 3 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPTCPTN*KKSSQV
Trigger: TACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGT...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR TCA 72 bp GATTCTAACTGTCTCGTACATTTCTTGAGTGGTAGCTaGGCACTGAGGTCTATTATCCCATTAAAGAACACT +
Preference number: 3 (lower is better)
Translates to: DSNCLVHFLSGS*ALRSIIPLKNT
Trigger: AGTGTTCTTTAATGGGATAATAGACCTCAGTGCTCAGCTACCACTCAAGAAATGTACGAGACAGTTAGAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR TCA 72 bp TGTTGTAGAAGGTGGTCGATTCGATGGTGCAGTTCTTaGAATACGTATCTGTGGATGTCACATCTTCAAAAT +
Preference number: 3 (lower is better)
Translates to: CCRRWSIRWCSS*NTYLWMSHLQN
Trigger: ATTTTGAAGATGTGACATCCACAGATACGTATTTCAAGAACTGCACCATCGAATCGACCACCTTCTACAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CCA 72 bp TTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTaGAGCAATGAAGAAACGAATGTATCTCATGCCTTT +
Preference number: 3 (lower is better)
Translates to: FKFQPGSQKKLP*SNEETNVSHAF
Trigger: AAAGGCATGAGATACATTCGTTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CCA 72 bp ATCTTTATGAACTTATCGTTCACAAGCTTCCCATGTTaGTGGATCTGGTTTTCCATGGTAAAGTTGATCGTG +
Preference number: 3 (lower is better)
Translates to: IFMNLSFTSFPC*WIWFSMVKLIV
Trigger: CACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR GCA 72 bp TTAGTGTATCACCTCTTCGTTATGCAAAGTTCAGGATaGTTGGGAAGAAAAGTCCGTCTATATACATTTTGC +
Preference number: 3 (lower is better)
Translates to: LVYHLFVMQSSG*LGRKVRLYTFC
Trigger: GCAAAATGTATATAGACGGACTTTTCTTCCCAAGCATCCTGAACTTTGCATAACGAAGAGGTGATACACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR GCA 72 bp CACAGATTTATACAATTCTCTCATGATCCTAAGCAATaGATTCCATATCACAAGAAAATGGAAAAGGACATC +
Preference number: 3 (lower is better)
Translates to: HRFIQFSHDPKQ*IPYHKKMEKDI
Trigger: GATGTCCTTTTCCATTTTCTTGTGATATGGAATGCATTGCTTAGGATCATGAGAGAATTGTATAAATCTGTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCCGTGGCCCTCTGGTTaGTGGGATACAGCTCAACTG +
Preference number: 4 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSPWPSG*WDTAQL
Trigger: CAGTTGAGCTGTATCCCACCAACCAGAGGGCCACGG...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCAGCCCCCAAGACCATCTaGTCTGGAGGGCGCCATCTT +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWAAPKTI*SGGRHL
Trigger: AAGATGGCGCCCTCCAGAGCAGATGGTCTTGGGGGC...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCATTCCAGGCTGCAATaGTGGTCCCACAGAACAGGC +
Preference number: 4 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSHSRLQ*WSHRTG
Trigger: GCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATG...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTAAGAAGAGGGTCCACTaGAAGCGCCCATGGCCACAC +
Preference number: 4 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSKKRVH*KRPWPH
Trigger: GTGTGGCCATGGGCGCTTCCAGTGGACCCTCTTCTT...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCCCAGGCCGCCCAAGATaGAGGCCCCTGCCATCATTC +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPPGRPR*RPLPSF
Trigger: GAATGATGGCAGGGGCCTTCATCTTGGGCGGCCTGG...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCTCCCTATGCCTGAGATaGGTCTGCAGAAGAGGAAGG +
Preference number: 4 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSSLCLR*VCRRGR
Trigger: CCTTCCTCTTCTGCAGACTCATCTCAGGCATAGGGA...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTCATTCCAGGCTGCAATaGTGGTCCCACAGAACAGGC +
Preference number: 4 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSHSRLQ*WSHRTG
Trigger: GCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATG...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 72 bp ATTCCAGGCTGCAATGCTGGTCCCACAGAACAGGCATaGCCAGCCGATCATCGCAGACTCGCTGTTGCCAAA +
Preference number: 4 (lower is better)
Translates to: IPGCNAGPTEQA*PADHRRLAVAK
Trigger: TTTGGCAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
CDS-3UTR TCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATTGGCCAGTGACATGCTaGGGACCTTCTTCCTTCCCA +
Preference number: 4 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDWPVTC*GPSSFP
Trigger: TGGGAAGGAAGAAGGTCCTCAGCATGTCACTGGCCA...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCAAGCCATAGTGTGGAATaGTGCTCCAGGCCATGGCAG +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWASHSVE*CSRPWQ
Trigger: CTGCCATGGCCTGGAGCATCATTCCACACTATGGCT...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGTGGGGCTTTCTGGCATaGACTTCAGAGCCACCATGG +
Preference number: 4 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQWGFLA*TSEPPW
Trigger: CCATGGTGGCTCTGAAGTTCATGCCAGAAAGCCCCA...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCGGCTGCCGAGGAAGCTaGCGAGGTAAATCAGAAAAT +
Preference number: 4 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSGCRGS*RGKSEN
Trigger: ATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCC...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCGCCCCCAAGACCATCTaGTCTGGAGGGCGCCATCTT +
Preference number: 4 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGAPKTI*SGGRHL
Trigger: AAGATGGCGCCCTCCAGAGCAGATGGTCTTGGGGGC...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCGCCCCCAAGACCATCTaGTCTGGAGGGCGCCATCTT +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPAPKTI*SGGRHL
Trigger: AAGATGGCGCCCTCCAGAGCAGATGGTCTTGGGGGC...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATCCACAGAACAGGCATTaGCAGCCGATCATCGCAGAC +
Preference number: 4 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDPQNRH*QPIIAD
Trigger: GTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGG...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAACTGACCAGCCAGCGCTaGTACCAAGTTCCGGTTGAG +
Preference number: 4 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKLTSQR*YQVPVE
Trigger: CTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAG...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAAAAGGCCGTGGCCCTCTaGTTGGTGGGATACAGCTCA +
Preference number: 4 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKKAVAL*LVGYSS
Trigger: TGAGCTGTATCCCACCAACCAGAGGGCCACGGCCTT...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTAAAGGCCGTGGCCCTCTaGTTGGTGGGATACAGCTCA +
Preference number: 4 (lower is better)
Translates to: GPKLGITKSISPSVLSAVKAVAL*LVGYSS
Trigger: TGAGCTGTATCCCACCAACCAGAGGGCCACGGCCTT...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTTGGCCAGTGACATGCTaGGGACCTTCTTCCTTCCCA +
Preference number: 4 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFWPVTC*GPSSFP
Trigger: TGGGAAGGAAGAAGGTCCTCAGCATGTCACTGGCCA...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCAGGCATTGATGGCCAGTaGCATGCTGAGGACCTTCTT +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWAGIDGQ*HAEDLL
Trigger: AAGAAGGTCCTCAGCATGTCACTGGCCATCAATGCC...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAAAGCCATAGTGTGGAATaGTGCTCCAGGCCATGGCAG +
Preference number: 4 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKSHSVE*CSRPWQ
Trigger: CTGCCATGGCCTGGAGCATCATTCCACACTATGGCT...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCCTCAGCCATCAAGTCTaGCTGGCCCCCAAGACCATC +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPLSHQV*LAPKTI
Trigger: GATGGTCTTGGGGGCCAGGCAGACTTGATGGCTGAG...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCATGGCAGCCCTCCTTCTaGTCCAGAAAGGTGGAATTG +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWAWQPSF*SRKVEL
Trigger: CAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCA...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTCCACAGAACAGGCATTaGCAGCCGATCATCGCAGAC +
Preference number: 4 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFPQNRH*QPIIAD
Trigger: GTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGG...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGCACTGGAAGCGCCCATaGCCACACTCATCAATGATG +
Preference number: 4 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQHWKRP*PHSSMM
Trigger: CATCATTGATGAGTGTGGCCATGGGCGCTTCCAGTG...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAACTGACCAGCCAGCGCTaGTACCAAGTTCCGGTTGAG +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKLTSQR*YQVPVE
Trigger: CTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAG...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCATCTTCAAAGTCCATGTaGCAGCCCTCCTTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWASSKSM*QPSFCS
Trigger: GGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGA...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCCCGTGGCCCTCTGGTTaGTGGGATACAGCTCAACTG +
Preference number: 4 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGPWPSG*WDTAQL
Trigger: CAGTTGAGCTGTATCCCACCAACCAGAGGGCCACGG...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAACCGTGGCCCTCTGGTTaGTGGGATACAGCTCAACTG +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKPWPSG*WDTAQL
Trigger: CAGTTGAGCTGTATCCCACCAACCAGAGGGCCACGG...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCATTGACATCATCTGGATaGGGGATGCCTTGGTACTCG +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWALTSSG*GMPWYS
Trigger: CGAGTACCAAGGCATCCCTCATCCAGATGATGTCAA...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGATGGTCTCATATTGGTaGGCCAGCTCCTCCTCATCT +
Preference number: 4 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQMVSYW*ASSSSS
Trigger: AGATGAGGAGGAGCTGGCTCACCAATATGAGACCAT...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTGGCATTGATGGCCAGTaGCATGCTGAGGACCTTCTT +
Preference number: 4 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFGIDGQ*HAEDLL
Trigger: AAGAAGGTCCTCAGCATGTCACTGGCCATCAATGCC...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAAAGCCATAGTGTGGAATaGTGCTCCAGGCCATGGCAG +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKSHSVE*CSRPWQ
Trigger: CTGCCATGGCCTGGAGCATCATTCCACACTATGGCT...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCAGGCTGCCGAGGAAGCTaGCGAGGTAAATCAGAAAAT +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWAGCRGS*RGKSEN
Trigger: ATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCC...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGATACAGCTCAACTGTaGTCACATCCAGAGCATTCC +
Preference number: 4 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSDTAQL*SHPEHS
Trigger: GGAATGCTCTGGATGTGATCACAGTTGAGCTGTATC...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGCATCTGGATGAGGGATaGCTTGGTACTCGCCTTCAT +
Preference number: 4 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQHLDEG*LGTRLH
Trigger: ATGAAGGCGAGTACCAAGGCATCCCTCATCCAGATG...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCCATTCCAGGCTGCAATaGTGGTCCCACAGAACAGGC +
Preference number: 4 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGHSRLQ*WSHRTG
Trigger: GCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATG...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAAGCCCCAGCCATAGTGTaGAATGATGCTCCAGGCCAT +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKAPAIV*NDAPGH
Trigger: ATGGCCTGGAGCATCATTCCACACTATGGCTGGGGC...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCGCCCCAGCCATAGTGTaGAATGATGCTCCAGGCCAT +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPAPAIV*NDAPGH
Trigger: ATGGCCTGGAGCATCATTCCACACTATGGCTGGGGC...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAAGAACCTGGGGCTTTCTaGCATGAACTTCAGAGCCAC +
Preference number: 4 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKEPGAF*HELQSH
Trigger: GTGGCTCTGAAGTTCATGCCAGAAAGCCCCAGGTTC...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTCTGACCAGCCAGCGCTaGTACCAAGTTCCGGTTGAG +
Preference number: 4 (lower is better)
Translates to: KPASGDPTTQLRLLKVSALTSQR*YQVPVE
Trigger: CTCAACCGGAACTTGGTACCAGCGCTGGCTGGTCAG...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCATTGCTCTCGAGTCTCTaGCAATCGAAGGGCAATCAG +
Preference number: 4 (lower is better)
Translates to: KRPEAKHTALGSQGWFWALLSSL*QSKGNQ
Trigger: CTGATTGCCCTTCGATTGCCAGAGACTCGAGAGCAA...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTATTGACATCATCTGGATaGGGGATGCCTTGGTACTCG +
Preference number: 4 (lower is better)
Translates to: GPKLGITKSISPSVLSAVLTSSG*GMPWYS
Trigger: CGAGTACCAAGGCATCCCTCATCCAGATGATGTCAA...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCTCCCTATGCCTGAGATaGGTCTGCAGAAGAGGAAGG +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPSLCLR*VCRRGR
Trigger: CCTTCCTCTTCTGCAGACTCATCTCAGGCATAGGGA...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTTGGGGCTTTCTGGCATaGACTTCAGAGCCACCATGG +
Preference number: 4 (lower is better)
Translates to: KPASGDPTTQLRLLKVSAWGFLA*TSEPPW
Trigger: CCATGGTGGCTCTGAAGTTCATGCCAGAAAGCCCCA...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGAGCAGACTGCAGAGATaGGCATGGAGCCGCCAATCA +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMSRLQR*AWSRQS
Trigger: TGATTGGCGGCTCCATGCTCATCTCTGCAGTCTGCT...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCTGTAACATCGCTCTGTaGATCTTCTTCCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSCNIAL*IFFLIL
Trigger: CAGAATCAGGAAGAAGATGCACAGAGCGATGTTACA...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATGGCGCCATCTTGGTCTaGTTAGACTTGACATCATCT +
Preference number: 4 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDGAILV*LDLTSS
Trigger: AGATGATGTCAAGTCTAAGCAGACCAAGATGGCGCC...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAAAGGCTTCATCATGTTTaGCCATCTCCAGCAGGAACC +
Preference number: 4 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKRLHHV*PSPAGT
Trigger: GGTTCCTGCTGGAGATGGGCAAACATGATGAAGCCT...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTAGGCTTCATCATGTTTaGCCATCTCCAGCAGGAACC +
Preference number: 4 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFRLHHV*PSPAGT
Trigger: GGTTCCTGCTGGAGATGGGCAAACATGATGAAGCCT...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AGTTATGAAGCAGCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCTGGCAGCCCTCCTTCTaGTCCAGAAAGGTGGAATTG +
Preference number: 4 (lower is better)
Translates to: SYEAAKYHGQITLHERGCWQPSF*SRKVEL
Trigger: CAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCA...GCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTCATAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCTGGCAGCCCTCCTTCTaGTCCAGAAAGGTGGAATTG +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPWQPSF*SRKVEL
Trigger: CAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCA...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp GCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGACCATGGCTGAGACTTGACATCATCTaGATGAGGGATGCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: AKYHGQITLHERGCRPWLRLDII*MRDALV
Trigger: TACCAAGGCATCCCTCATCCAGATGATGTCAAGTCT...CAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGGCCATCAAGTCTGCCTaGCCCCCAAGACCATCTGCT +
Preference number: 4 (lower is better)
Translates to: YLPYQFEEKFPGKGNGTWAIKSA*PPRPSA
Trigger: AGCAGATGGTCTTGGGGGCCAGGCAGACTTGATGGC...CCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AGTTATGAAGCAGCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCCACTGGAAGCGCCCATaGCCACACTCATCAATGATG +
Preference number: 4 (lower is better)
Translates to: SYEAAKYHGQITLHERGCHWKRP*PHSSMM
Trigger: CATCATTGATGAGTGTGGCCATGGGCGCTTCCAGTG...GCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTCATAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGAAGAAGAGGGTCCACTaGAAGCGCCCATGGCCACAC +
Preference number: 4 (lower is better)
Translates to: YLPYQFEEKFPGKGNGTWKKRVH*KRPWPH
Trigger: GTGTGGCCATGGGCGCTTCCAGTGGACCCTCTTCTT...CCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAATCTTCAAAGTCCATGTaGCAGCCCTCCTTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKSSKSM*QPSFCS
Trigger: GGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGA...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGGATGGGGACCACTTTaGTTATCCCAACAAAAGAAG +
Preference number: 4 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSGWGPL*LSQQKK
Trigger: CTTCTTTTGTTGGGATAACCAAAGTGGTCCCCATCC...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTATTGCTCTCGAGTCTCTaGCAATCGAAGGGCAATCAG +
Preference number: 4 (lower is better)
Translates to: GPKLGITKSISPSVLSAVLLSSL*QSKGNQ
Trigger: CTGATTGCCCTTCGATTGCCAGAGACTCGAGAGCAA...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 72 bp GCTCAGAAACCAGCATCAGGAGATCCCACAACACAGTaGAGACTGCTGAAAGTATCGGCTCCCAAACAAGCC +
Preference number: 4 (lower is better)
Translates to: AQKPASGDPTTQ*RLLKVSAPKQA
Trigger: GGCTTGTTTGGGAGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTTCTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCATGGTCTCATATTGGTaGGCCAGCTCCTCCTCATCT +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPMVSYW*ASSSSS
Trigger: AGATGAGGAGGAGCTGGCTCACCAATATGAGACCAT...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTGGGGCTTTCTGGCATaGACTTCAGAGCCACCATGG +
Preference number: 4 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSWGFLA*TSEPPW
Trigger: CCATGGTGGCTCTGAAGTTCATGCCAGAAAGCCCCA...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CTCTCCCTGCCTGGGATGAAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCTATCATGGACTTGTTTaGGAATCATCCAGGCTTCAT +
Preference number: 4 (lower is better)
Translates to: LSLPGMKRPEAKHTALGSYHGLV*ESSRLH
Trigger: ATGAAGCCTGGATGATTCTCAAACAAGTCCATGATA...GGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTTCATCCCAGGCAGGGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAACTCAGCCATCAAGTCTaGCTGGCCCCCAAGACCATC +
Preference number: 4 (lower is better)
Translates to: PFHIQVPTWISEKASLEQLSHQV*LAPKTI
Trigger: GATGGTCTTGGGGGCCAGGCAGACTTGATGGCTGAG...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCAAGGCTCCATATCCCTaGACGAAGGAGGAGAGTGAA +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPKAPYP*TKEESE
Trigger: TTCACTCTCCTCCTTCGTGCAGGGATATGGAGCCTT...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAAAAGGCTCCATATCCCTaGACGAAGGAGGAGAGTGAA +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKKAPYP*TKEESE
Trigger: TTCACTCTCCTCCTTCGTGCAGGGATATGGAGCCTT...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AGTTATGAAGCAGCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGGCTTCATCATGTTTaGCCATCTCCAGCAGGAACC +
Preference number: 4 (lower is better)
Translates to: SYEAAKYHGQITLHERGCRLHHV*PSPAGT
Trigger: GGTTCCTGCTGGAGATGGGCAAACATGATGAAGCCT...GCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTCATAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGAGACTTGACATCATCTaGATGAGGGATGCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQRLDII*MRDALV
Trigger: TACCAAGGCATCCCTCATCCAGATGATGTCAAGTCT...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTGAACCTGGGGCTTTCTaGCATGAACTTCAGAGCCAC +
Preference number: 4 (lower is better)
Translates to: KPASGDPTTQLRLLKVSAEPGAF*HELQSH
Trigger: GTGGCTCTGAAGTTCATGCCAGAAAGCCCCAGGTTC...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGTCTTCAAAGTCCATGTaGCAGCCCTCCTTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMSSKSM*QPSFCS
Trigger: GGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGA...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTTTGACATCATCTGGATaGGGGATGCCTTGGTACTCG +
Preference number: 4 (lower is better)
Translates to: KPASGDPTTQLRLLKVSALTSSG*GMPWYS
Trigger: CGAGTACCAAGGCATCCCTCATCCAGATGATGTCAA...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCGGCCACACTCATCAATaGTGGTCTCATATTGGTGAG +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPGHTHQ*WSHIGE
Trigger: CTCACCAATATGAGACCATCATTGATGAGTGTGGCC...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAAGGCCACACTCATCAATaGTGGTCTCATATTGGTGAG +
Preference number: 4 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKGHTHQ*WSHIGE
Trigger: CTCACCAATATGAGACCATCATTGATGAGTGTGGCC...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTCATCTGGATGAGGGATaGCTTGGTACTCGCCTTCAT +
Preference number: 4 (lower is better)
Translates to: KPASGDPTTQLRLLKVSAHLDEG*LGTRLH
Trigger: ATGAAGGCGAGTACCAAGGCATCCCTCATCCAGATG...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGTTGGGAGTTTTGATGTaGGAAACCGTGAACACCTTT +
Preference number: 4 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQLGVLM*ETVNTF
Trigger: AAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAA...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp TCTCACATCCCGTGTGATGGATGGACGGGAATTGCCCTTGGTTGGTTAGGCAAAACAAGCTTCCCATGTTaGTGGATCTGGTTTTCCATG +
Preference number: 4 (lower is better)
Translates to: SHIPCDGWTGIALGWLGKTSFPC*WIWFSM
Trigger: CATGGAAAACCAGATCCACCAACATGGGAAGCTTGT...TTTGCCTAACCAACCAAGGGCAATTCCCGTCCATCCATCACACGGGATGTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGTCCAGGCTGCAATGCTaGTCCCACAGAACAGGCATT +
Preference number: 4 (lower is better)
Translates to: YLPYQFEEKFPGKGNGTWSRLQC*SHRTGI
Trigger: AATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGA...CCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCAGGCTGCAATGCTaGTCCCACAGAACAGGCATT +
Preference number: 4 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSSRLQC*SHRTGI
Trigger: AATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGA...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGTTGCTCTCGAGTCTCTaGCAATCGAAGGGCAATCAG +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMLLSSL*QSKGNQ
Trigger: CTGATTGCCCTTCGATTGCCAGAGACTCGAGAGCAA...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AGAGTAAACATGTTAGCCACACTTGAAAATGGGAAGTTCTCAAAGATTTCACTCCCAGGCCGCCCAAGATaGAGGCCCCTGCCATCATTC +
Preference number: 4 (lower is better)
Translates to: RVNMLATLENGKFSKISLPGRPR*RPLPSF
Trigger: GAATGATGGCAGGGGCCTTCATCTTGGGCGGCCTGG...GAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGCCAGGCCGCCCAAGATaGAGGCCCCTGCCATCATTC +
Preference number: 4 (lower is better)
Translates to: ILLKGWVFLYQSILKATVPGRPR*RPLPSF
Trigger: GAATGATGGCAGGGGCCTTCATCTTGGGCGGCCTGG...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATAGCTCTGTATCTCAATaGATTCATCCATTTGCTTGG +
Preference number: 4 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDSSVSQ*IHPFAW
Trigger: CCAAGCAAATGGATGAATTCATTGAGATACAGAGCT...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGAGCCGCCAATCATCTTaGGTCTTCCAATTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMSRQSS*VFQFCP
Trigger: TGGACAGAATTGGAAGACTCAAGATGATTGGCGGCT...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAACTCAGCCATCAAGTCTaGCTGGCCCCCAAGACCATC +
Preference number: 4 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKLSHQV*LAPKTI
Trigger: GATGGTCTTGGGGGCCAGGCAGACTTGATGGCTGAG...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp GCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCAGACCATGGCTGATGAATTCATCCATTTaGTTGGGAGTTTTGATGTGG +
Preference number: 4 (lower is better)
Translates to: AKYHGQITLHERGCRPWLMNSSI*LGVLMW
Trigger: CCACATCAAAACTCCCAAGCAAATGGATGAATTCAT...CAGCCATGGTCTGCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTATTGGGAGTTTTGATGTaGGAAACCGTGAACACCTTT +
Preference number: 4 (lower is better)
Translates to: GPKLGITKSISPSVLSAVLGVLM*ETVNTF
Trigger: AAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAA...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCACAAGCTTCCCATGTTaGTGGATCTGGTTTTCCATG +
Preference number: 4 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGTSFPC*WIWFSM
Trigger: CATGGAAAACCAGATCCACCAACATGGGAAGCTTGT...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATCCAGGCTGCAATGCTaGTCCCACAGAACAGGCATT +
Preference number: 4 (lower is better)
Translates to: PFHIQVPTWISEKASLEQSRLQC*SHRTGI
Trigger: AATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGA...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp GAAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCGGATGGGGACCACTTTaGTTATCCCAACAAAAGAAG +
Preference number: 4 (lower is better)
Translates to: ETSIRRSHNTVETAESIGGWGPL*LSQQKK
Trigger: CTTCTTTTGTTGGGATAACCAAAGTGGTCCCCATCC...GCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAATGGCCAGTGACATGCTaGGGACCTTCTTCCTTCCCA +
Preference number: 4 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKWPVTC*GPSSFP
Trigger: TGGGAAGGAAGAAGGTCCTCAGCATGTCACTGGCCA...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTTATCATGGACTTGTTTaGGAATCATCCAGGCTTCAT +
Preference number: 4 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFYHGLV*ESSRLH
Trigger: ATGAAGCCTGGATGATTCTCAAACAAGTCCATGATA...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCGATACAGCTCAACTGTaGTCACATCCAGAGCATTCC +
Preference number: 4 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSDTAQL*SHPEHS
Trigger: GGAATGCTCTGGATGTGATCACAGTTGAGCTGTATC...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCCAAGCATTCCTTTCTTaGAACTGGACAGACACATGT +
Preference number: 4 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPQAFLS*NWTDTC
Trigger: ACATGTGTCTGTCCAGTTCCAAGAAAGGAATGCTTG...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 72 bp AAGATGCTACCCATTCGCACCAAGTTTCCTGCGACCTaGAATGGAGAGTCCTCCCCAAATATGGCTAAAATG +
Preference number: 4 (lower is better)
Translates to: KMLPIRTKFPAT*NGESSPNMAKM
Trigger: CATTTTAGCCATATTTGGGGAGGACTCTCCATTCAAGGTCGCAGGAAACTTGGTGCGAATGGGTAGCATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAAAGCCGCCAATCATCTTaGGTCTTCCAATTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: PFHIQVPTWISEKASLEQSRQSS*VFQFCP
Trigger: TGGACAGAATTGGAAGACTCAAGATGATTGGCGGCT...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGCGCCATCTTGGTCTaGTTAGACTTGACATCATCT +
Preference number: 4 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKGAILV*LDLTSS
Trigger: AGATGATGTCAAGTCTAAGCAGACCAAGATGGCGCC...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AGAGTAAACATGTTAGCCACACTTGAAAATGGGAAGTTCTCAAAGATTTCACTCGCCATCAAGTCTGCCTaGCCCCCAAGACCATCTGCT +
Preference number: 4 (lower is better)
Translates to: RVNMLATLENGKFSKISLAIKSA*PPRPSA
Trigger: AGCAGATGGTCTTGGGGGCCAGGCAGACTTGATGGC...GAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAAAGAAGAGGGTCCACTaGAAGCGCCCATGGCCACAC +
Preference number: 4 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKKKRVH*KRPWPH
Trigger: GTGTGGCCATGGGCGCTTCCAGTGGACCCTCTTCTT...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGCAAGCATTCCTTTCTTaGAACTGGACAGACACATGT +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMQAFLS*NWTDTC
Trigger: ACATGTGTCTGTCCAGTTCCAAGAAAGGAATGCTTG...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp CTTCATGAGAGAGGCTGCAGACCATGGCTGCATCCTTCTCACATCCCGTGTGATCTCATGTTTGTATCATaGACTTGTTTGAGAATCATC +
Preference number: 4 (lower is better)
Translates to: LHERGCRPWLHPSHIPCDLMFVS*TCLRII
Trigger: GATGATTCTCAAACAAGTCCATGATACAAACATGAG...ATCACACGGGATGTGAGAAGGATGCAGCCATGGTCTGCAGCCTCTCTCATGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTTTGGGAGTTTTGATGTaGGAAACCGTGAACACCTTT +
Preference number: 4 (lower is better)
Translates to: KPASGDPTTQLRLLKVSALGVLM*ETVNTF
Trigger: AAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAA...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCACAAGCTTCCCATGTTaGTGGATCTGGTTTTCCATG +
Preference number: 4 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSTSFPC*WIWFSM
Trigger: CATGGAAAACCAGATCCACCAACATGGGAAGCTTGT...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTAAGGCCGTGGCCCTCTaGTTGGTGGGATACAGCTCA +
Preference number: 4 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPKAVAL*LVGYSS
Trigger: TGAGCTGTATCCCACCAACCAGAGGGCCACGGCCTT...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCGGATGGGGACCACTTTaGTTATCCCAACAAAAGAAG +
Preference number: 4 (lower is better)
Translates to: TLISSGVTASYEAAKYHGGWGPL*LSQQKK
Trigger: CTTCTTTTGTTGGGATAACCAAAGTGGTCCCCATCC...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGTATCATGGACTTGTTTaGGAATCATCCAGGCTTCAT +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMYHGLV*ESSRLH
Trigger: ATGAAGCCTGGATGATTCTCAAACAAGTCCATGATA...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGAGCTCTGTATCTCAATaGATTCATCCATTTGCTTGG +
Preference number: 4 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMSSVSQ*IHPFAW
Trigger: CCAAGCAAATGGATGAATTCATTGAGATACAGAGCT...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp AGAGTAAACATGTTAGCCACACTTGAAAATGGGAAGTTCTCAAAGATTTCACTCAGCAGACTGCAGAGATaGGCATGGAGCCGCCAATCA +
Preference number: 4 (lower is better)
Translates to: RVNMLATLENGKFSKISLSRLQR*AWSRQS
Trigger: TGATTGGCGGCTCCATGCTCATCTCTGCAGTCTGCT...GAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAAGCAGACTGCAGAGATaGGCATGGAGCCGCCAATCA +
Preference number: 4 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKSRLQR*AWSRQS
Trigger: TGATTGGCGGCTCCATGCTCATCTCTGCAGTCTGCT...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTGTAACATCGCTCTGTaGATCTTCTTCCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSCNIAL*IFFLIL
Trigger: CAGAATCAGGAAGAAGATGCACAGAGCGATGTTACA...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp AGAGTAAACATGTTAGCCACACTTGAAAATGGGAAGTTCTCAAAGATTTCACTCCCACAGAACAGGCATTaGCAGCCGATCATCGCAGAC +
Preference number: 4 (lower is better)
Translates to: RVNMLATLENGKFSKISLPQNRH*QPIIAD
Trigger: GTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGG...GAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp AAGCTTCCTTGGAGCAATGAAGAAACGAATGTATCTCATGCCTTTTATTTCCTAGCCCCAGCCATAGTGTaGAATGATGCTCCAGGCCAT +
Preference number: 4 (lower is better)
Translates to: KLPWSNEETNVSHAFYFLAPAIV*NDAPGH
Trigger: ATGGCCTGGAGCATCATTCCACACTATGGCTGGGGC...TAGGAAATAAAAGGCATGAGATACATTCGTTTCTTCATTGCTCCAAGGAAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTACTCATGTTTGTATCATaGACTTGTTTGAGAATCATC +
Preference number: 4 (lower is better)
Translates to: GPKLGITKSISPSVLSAVLMFVS*TCLRII
Trigger: GATGATTCTCAAACAAGTCCATGATACAAACATGAG...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAAAGCTTCCCATGTTGGTaGATCTGGTTTTCCATGGTA +
Preference number: 4 (lower is better)
Translates to: PFHIQVPTWISEKASLEQSFPCW*IWFSMV
Trigger: TACCATGGAAAACCAGATCCACCAACATGGGAAGCT...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAAGCTTCCCATGTTGGTaGATCTGGTTTTCCATGGTA +
Preference number: 4 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKSFPCW*IWFSMV
Trigger: TACCATGGAAAACCAGATCCACCAACATGGGAAGCT...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 72 bp TGTATCTCAATGAATTCATCCATTTGCTTGGGAGTTTaGATGTGGGAAACCGTGAACACCTTTTCCGGGGTC +
Preference number: 4 (lower is better)
Translates to: CISMNSSICLGV*MWETVNTFSGV
Trigger: GACCCCGGAAAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAAGCAAATGGATGAATTCATTGAGATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
CDS-3UTR TCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAGGCATTGATGGCCAGTaGCATGCTGAGGACCTTCTT +
Preference number: 4 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKGIDGQ*HAEDLL
Trigger: AAGAAGGTCCTCAGCATGTCACTGGCCATCAATGCC...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTTCCCTATGCCTGAGATaGGTCTGCAGAAGAGGAAGG +
Preference number: 4 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPSLCLR*VCRRGR
Trigger: CCTTCCTCTTCTGCAGACTCATCTCAGGCATAGGGA...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAAAGCCGCCAATCATCTTaGGTCTTCCAATTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKSRQSS*VFQFCP
Trigger: TGGACAGAATTGGAAGACTCAAGATGATTGGCGGCT...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAATGTAACATCGCTCTGTaGATCTTCTTCCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKCNIAL*IFFLIL
Trigger: CAGAATCAGGAAGAAGATGCACAGAGCGATGTTACA...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAAGGCGCCATCTTGGTCTaGTTAGACTTGACATCATCT +
Preference number: 4 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKGAILV*LDLTSS
Trigger: AGATGATGTCAAGTCTAAGCAGACCAAGATGGCGCC...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAACACTGGAAGCGCCCATaGCCACACTCATCAATGATG +
Preference number: 4 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKHWKRP*PHSSMM
Trigger: CATCATTGATGAGTGTGGCCATGGGCGCTTCCAGTG...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAGAACCTGGGGCTTTCTaGCATGAACTTCAGAGCCAC +
Preference number: 4 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKEPGAF*HELQSH
Trigger: GTGGCTCTGAAGTTCATGCCAGAAAGCCCCAGGTTC...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 72 bp TTGAATGGAGAGTCCTCCCCAAATATGGCTAAAATGTaGGCAACCTTAGCAGCCACCATTTGTGGGAATAAA +
Preference number: 4 (lower is better)
Translates to: LNGESSPNMAKM*ATLAATICGNK
Trigger: TTTATTCCCACAAATGGTGGCTGCTAAGGTTGCCAACATTTTAGCCATATTTGGGGAGGACTCTCCATTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTGGCTGCCGAGGAAGCTaGCGAGGTAAATCAGAAAAT +
Preference number: 4 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPGCRGS*RGKSEN
Trigger: ATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCC...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR GCA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTAAGGCTCCATATCCCTaGACGAAGGAGGAGAGTGAA +
Preference number: 4 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPKAPYP*TKEESE
Trigger: TTCACTCTCCTCCTTCGTGCAGGGATATGGAGCCTT...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp AGAGTAAACATGTTAGCCACACTTGAAAATGGGAAGTTCTCAAAGATTTCACTCGGCCACACTCATCAATaGTGGTCTCATATTGGTGAG +
Preference number: 4 (lower is better)
Translates to: RVNMLATLENGKFSKISLGHTHQ*WSHIGE
Trigger: CTCACCAATATGAGACCATCATTGATGAGTGTGGCC...GAGTGAAATCTTTGAGAACTTCCCATTTTCAAGTGTGGCTAACATGTTTACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR TCA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGGATACAGCTCAACTGTaGTCACATCCAGAGCATTCC +
Preference number: 4 (lower is better)
Translates to: ILLKGWVFLYQSILKATVDTAQL*SHPEHS
Trigger: GGAATGCTCTGGATGTGATCACAGTTGAGCTGTATC...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGAGACTTGACATCATCTaGATGAGGGATGCCTTGGTA +
Preference number: 4 (lower is better)
Translates to: ILLKGWVFLYQSILKATVRLDII*MRDALV
Trigger: TACCAAGGCATCCCTCATCCAGATGATGTCAAGTCT...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp AACGAATGTATCTCATGCCTTTTATTTCCTAATGTGCATGCTAATGGCCTGTTTAGCTTCCCATGTTGGTaGATCTGGTTTTCCATGGTA +
Preference number: 4 (lower is better)
Translates to: NECISCLLFPNVHANGLFSFPCW*IWFSMV
Trigger: TACCATGGAAAACCAGATCCACCAACATGGGAAGCT...AAACAGGCCATTAGCATGCACATTAGGAAATAAAAGGCATGAGATACATTCGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
3UTR CAA 72 bp CATCTTTATGAACTTATCGTTCACAAGCTTCCCATGTaGGTGGATCTGGTTTTCCATGGTAAAGTTGATCGT +
Preference number: 4 (lower is better)
Translates to: HLYELIVHKLPM*VDLVFHGKVDR
Trigger: ACGATCAACTTTACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207001.2
3UTR CAA 72 bp GTGTATCACCTCTTCGTTATGCAAAGTTCAGGATGCTaGGGAAGAAAAGTCCGTCTATATACATTTTGCTTA +
Preference number: 4 (lower is better)
Translates to: VYHLFVMQSSGC*GRKVRLYTFCL
Trigger: TAAGCAAAATGTATATAGACGGACTTTTCTTCCCAAGCATCCTGAACTTTGCATAACGAAGAGGTGATACAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR TCA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAAGCTCTGTATCTCAATaGATTCATCCATTTGCTTGG +
Preference number: 4 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKSSVSQ*IHPFAW
Trigger: CCAAGCAAATGGATGAATTCATTGAGATACAGAGCT...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR GCA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGATGAATTCATCCATTTaGTTGGGAGTTTTGATGTGG +
Preference number: 4 (lower is better)
Translates to: ILLKGWVFLYQSILKATVMNSSI*LGVLMW
Trigger: CCACATCAAAACTCCCAAGCAAATGGATGAATTCAT...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CCA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGCTCATGTTTGTATCATaGACTTGTTTGAGAATCATC +
Preference number: 4 (lower is better)
Translates to: ILLKGWVFLYQSILKATVLMFVS*TCLRII
Trigger: GATGATTCTCAAACAAGTCCATGATACAAACATGAG...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
3UTR CAA 72 bp AGGATGCTTGGGAAGAAAAGTCCGTCTATATACATTTaGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATC +
Preference number: 4 (lower is better)
Translates to: RMLGKKSPSIYI*LKGWVFLYQSI
Trigger: GATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAATGTATATAGACGGACTTTTCTTCCCAAGCATCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CCA 90 bp GGCTTCATCATGTTTGCCCATCTCCAGCAGGAACCTGGGGCTTTCTaGCATGAACTTCAGAGCCACCATGGACACAGTGGCGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: GFIMFAHLQQEPGAF*HELQSHHGHSGGQS
Trigger: GCTCTGCCCGCCACTGTGTCCATGGTGGCTCTGAAGTTCATGCCAGAAAGCCCCAGGTTCCTGCTGGAGATGGGCAAACATGATGAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCAGCCGTGGCCCTCTGGTaGGTGGGATACAGCTCAACT +
Preference number: 5 (lower is better)
Translates to: KRPEAKHTALGSQGWFWAAVALW*VGYSST
Trigger: AGTTGAGCTGTATCCCACCAACCAGAGGGCCACGGC...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGGCCGTGGCCCTCTGGTaGGTGGGATACAGCTCAACT +
Preference number: 5 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQAVALW*VGYSST
Trigger: AGTTGAGCTGTATCCCACCAACCAGAGGGCCACGGC...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS TCA 90 bp TGTCGGGGAACCACACCGTCAGGCCGTAGTAACTTAAGGCCATGGTaGACCAGACCACAGCCAGAATCAGGGTGTTCATTCTGTAGGGCC +
Preference number: 5 (lower is better)
Translates to: CRGTTPSGRSNLRPW*TRPQPESGCSFCRA
Trigger: GGCCCTACAGAATGAACACCCTGATTCTGGCTGTGGTCTGGTTCACCATGGCCTTAAGTTACTACGGCCTGACGGTGTGGTTCCCCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS GCA 90 bp GGTGGGATACAGCTCAACTGTGATCACATCCAGAGCATTCCAGGCTaGAATGCTGGTCCCACAGAACAGGCATTGCCAGCCGATCATCGC +
Preference number: 5 (lower is better)
Translates to: GGIQLNCDHIQSIPG*NAGPTEQALPADHR
Trigger: GCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATGCTCTGGATGTGATCACAGTTGAGCTGTATCCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTCTGGAGGGCGCCATCTaGGTCTGCTTAGACTTGACA +
Preference number: 5 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSLEGAI*VCLDLT
Trigger: TGTCAAGTCTAAGCAGACCAAGATGGCGCCCTCCAG...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTGCCGTGGCCCTCTGGTaGGTGGGATACAGCTCAACT +
Preference number: 5 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFAVALW*VGYSST
Trigger: AGTTGAGCTGTATCCCACCAACCAGAGGGCCACGGC...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS TCA 90 bp AGGCAAAAACAATTGGCAGGGAGCCCCCAATCCCTATGCCTGAGATaGGTCTGCAGAAGAGGAAGGCTCCATATCCCTGCACGAAGGAGG +
Preference number: 5 (lower is better)
Translates to: RQKQLAGSPQSLCLR*VCRRGRLHIPARRR
Trigger: CCTCCTTCGTGCAGGGATATGGAGCCTTCCTCTTCTGCAGACTCATCTCAGGCATAGGGATTGGGGGCTCCCTGCCAATTGTTTTTGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS GCA 90 bp CCTATGCCTGAGATGAGTCTGCAGAAGAGGAAGGCTCCATATCCCTaGACGAAGGAGGAGAGTGAAGCAAAGGAGGCATTGATGGCCAGT +
Preference number: 5 (lower is better)
Translates to: PMPEMSLQKRKAPYP*TKEESEAKEALMAS
Trigger: ACTGGCCATCAATGCCTCCTTTGCTTCACTCTCCTCCTTCGTGCAGGGATATGGAGCCTTCCTCTTCTGCAGACTCATCTCAGGCATAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTCTGGAGGGCGCCATCTaGGTCTGCTTAGACTTGACA +
Preference number: 5 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFLEGAI*VCLDLT
Trigger: TGTCAAGTCTAAGCAGACCAAGATGGCGCCCTCCAG...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTACTGGAGGGCGCCATCTaGGTCTGCTTAGACTTGACA +
Preference number: 5 (lower is better)
Translates to: GPKLGITKSISPSVLSAVLEGAI*VCLDLT
Trigger: TGTCAAGTCTAAGCAGACCAAGATGGCGCCCTCCAG...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AAATGCAAATACGTAGTCTGCTCTCTGAGCCCAGTATGTGTTGACCCCACTCCCCCCACAGAACAGGCATaGCCAGCCGATCATCGCAGA +
Preference number: 5 (lower is better)
Translates to: KCKYVVCSLSPVCVDPTPPTEQA*PADHRR
Trigger: TCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGG...GGGAGTGGGGTCAACACATACTGGGCTCAGAGAGCAGACTACGTATTTGCATTT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTCAGGCTTCATCATGTTaGCCCATCTCCAGCAGGAAC +
Preference number: 5 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFQASSC*PISSRN
Trigger: GTTCCTGCTGGAGATGGGCAAACATGATGAAGCCTG...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGCAGGCTTCATCATGTTaGCCCATCTCCAGCAGGAAC +
Preference number: 5 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMQASSC*PISSRN
Trigger: GTTCCTGCTGGAGATGGGCAAACATGATGAAGCCTG...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCAATTTGCTTGGGAGTTTaGATGTGGGAAACCGTGAAC +
Preference number: 5 (lower is better)
Translates to: KRPEAKHTALGSQGWFWAICLGV*MWETVN
Trigger: GTTCACGGTTTCCCACATCAAAACTCCCAAGCAAAT...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGATTTGCTTGGGAGTTTaGATGTGGGAAACCGTGAAC +
Preference number: 5 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQICLGV*MWETVN
Trigger: GTTCACGGTTTCCCACATCAAAACTCCCAAGCAAAT...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTGTCTTTCACAAGCTTCCCATGTaGGTGGATCTGGTTTTCCAT +
Preference number: 5 (lower is better)
Translates to: QEAWLCWSVLKKIFPSVFHKLPM*VDLVFH
Trigger: ATGGAAAACCAGATCCACCAACATGGGAAGCTTGTG...AAAGACAGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTTCGATGGTGCAGTTCTaGAAATACGTATCTGTGGAT +
Preference number: 5 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSSMVQF*KYVSVD
Trigger: ATCCACAGATACGTATTTCAAGAACTGCACCATCGA...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAAGAGCCGCCAATCATCTaGAGTCTTCCAATTCTGTCC +
Preference number: 5 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKEPPII*SLPILS
Trigger: GGACAGAATTGGAAGACTCAAGATGATTGGCGGCTC...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAACCCACAGAACAGGCATaGCCAGCCGATCATCGCAGA +
Preference number: 5 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKPTEQA*PADHRR
Trigger: TCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGG...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp TACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGAGTAGGCAAAAACAATaGGCAGGGAGCCCCCAATCC +
Preference number: 5 (lower is better)
Translates to: YLPYQFEEKFPGKGNGTWSRQKQ*AGSPQS
Trigger: GGATTGGGGGCTCCCTGCCAATTGTTTTTGCCTACT...CCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCCGGACAGGTTTGTATCATGGACTaGTTTGAGAATCATCCAGGC +
Preference number: 5 (lower is better)
Translates to: SSQVKEMARGLPSTSSGQVCIMD*FENHPG
Trigger: GCCTGGATGATTCTCAAACAAGTCCATGATACAAAC...CTGTCCGGAGGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTTTTTCCATGGTAAAGTaGATCGTGGCGCCATGCACG +
Preference number: 5 (lower is better)
Translates to: KPASGDPTTQLRLLKVSAFSMVK*IVAPCT
Trigger: CGTGCATGGCGCCACGATCAACTTTACCATGGAAAA...AGCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp AAGAGACCTGAAGCTAAGCACACAGCTCTGGGATCCCAAGGATGGTTCTGGGCATCCAGAAAGGTGGAATaGATAAACCGACAGTTGATG +
Preference number: 5 (lower is better)
Translates to: KRPEAKHTALGSQGWFWASRKVE*INRQLM
Trigger: CATCAACTGTCGGTTTATCAATTCCACCTTTCTGGA...TGCCCAGAACCATCCTTGGGATCCCAGAGCTGTGTGCTTAGCTTCAGGTCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGGAGCCGCCAATCATCTaGAGTCTTCCAATTCTGTCC +
Preference number: 5 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMEPPII*SLPILS
Trigger: GGACAGAATTGGAAGACTCAAGATGATTGGCGGCTC...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTAAGGATGGGGACCACTTaGGTTATCCCAACAAAAGAA +
Preference number: 5 (lower is better)
Translates to: GPKLGITKSISPSVLSAVRMGTT*VIPTKE
Trigger: TTCTTTTGTTGGGATAACCAAAGTGGTCCCCATCCT...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGCCAAGCATTCCTTTCTaGGAACTGGACAGACACATG +
Preference number: 5 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMPSIPF*ELDRHM
Trigger: CATGTGTCTGTCCAGTTCCAAGAAAGGAATGCTTGG...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAAGTAGGCAAAAACAATaGGCAGGGAGCCCCCAATCC +
Preference number: 5 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKSRQKQ*AGSPQS
Trigger: GGATTGGGGGCTCCCTGCCAATTGTTTTTGCCTACT...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GGTCCTAAACTAGGGATCACAAAGTCCATTTCTCCTTCCGTGCTGTCCGCGGTAGTATCATGGACTTGTTaGAGAATCATCCAGGCTTCA +
Preference number: 5 (lower is better)
Translates to: GPKLGITKSISPSVLSAVVSWTC*RIIQAS
Trigger: TGAAGCCTGGATGATTCTCAAACAAGTCCATGATAC...TACCGCGGACAGCACGGAAGGAGAAATGGACTTTGTGATCCCTAGTTTAGGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAGAGGCAGGAGGCGTGGCTGTGCTGGAGTGTCCTGAAAAAGATCTTCCCATCTAATGAATTCATCCATTaGCTTGGGAGTTTTGATGTG +
Preference number: 5 (lower is better)
Translates to: ERQEAWLCWSVLKKIFPSNEFIH*LGSFDV
Trigger: CACATCAAAACTCCCAAGCAAATGGATGAATTCATT...AGATGGGAAGATCTTTTTCAGGACACTCCAGCACAGCCACGCCTCCTGCCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGCACAAGCTTCCCATGTaGGTGGATCTGGTTTTCCAT +
Preference number: 5 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMHKLPM*VDLVFH
Trigger: ATGGAAAACCAGATCCACCAACATGGGAAGCTTGTG...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAAATGATGGTCTCATATaGGTGAGCCAGCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKNDGLI*VSQLLL
Trigger: GAGGAGGAGCTGGCTCACCAATATGAGACCATCATT...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCCCAAGCATTCCTTTCTaGGAACTGGACAGACACATG +
Preference number: 5 (lower is better)
Translates to: TLISSGVTASYEAAKYHGPSIPF*ELDRHM
Trigger: CATGTGTCTGTCCAGTTCCAAGAAAGGAATGCTTGG...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATTTTCCATGGTAAAGTaGATCGTGGCGCCATGCACG +
Preference number: 5 (lower is better)
Translates to: PFHIQVPTWISEKASLEQFSMVK*IVAPCT
Trigger: CGTGCATGGCGCCACGATCAACTTTACCATGGAAAA...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCCACAAGCTTCCCATGTaGGTGGATCTGGTTTTCCAT +
Preference number: 5 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSHKLPM*VDLVFH
Trigger: ATGGAAAACCAGATCCACCAACATGGGAAGCTTGTG...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAATCGATGGTGCAGTTCTaGAAATACGTATCTGTGGAT +
Preference number: 5 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKSMVQF*KYVSVD
Trigger: ATCCACAGATACGTATTTCAAGAACTGCACCATCGA...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp GAAACCAGCATCAGGAGATCCCACAACACAGTTGAGACTGCTGAAAGTATCGGCTCCAGAAAGGTGGAATaGATAAACCGACAGTTGATG +
Preference number: 5 (lower is better)
Translates to: ETSIRRSHNTVETAESIGSRKVE*INRQLM
Trigger: CATCAACTGTCGGTTTATCAATTCCACCTTTCTGGA...GCCGATACTTTCAGCAGTCTCAACTGTGTTGTGGGATCTCCTGATGCTGGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp AGTTATGAAGCAGCCAAGTACCATGGCCAGATAACCCTTCATGAGAGAGGCTGCTCCAGAAAGGTGGAATaGATAAACCGACAGTTGATG +
Preference number: 5 (lower is better)
Translates to: SYEAAKYHGQITLHERGCSRKVE*INRQLM
Trigger: CATCAACTGTCGGTTTATCAATTCCACCTTTCTGGA...GCAGCCTCTCTCATGAAGGGTTATCTGGCCATGGTACTTGGCTGCTTCATAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp ACTGCCAACTTATATTCCAGAGGACTAGGCAAAGATGGCTTGAACTGGCCTGGCAATTCATCCATTTGCTaGGGAGTTTTGATGTGGGAA +
Preference number: 5 (lower is better)
Translates to: TANLYSRGLGKDGLNWPGNSSIC*GVLMWE
Trigger: TTCCCACATCAAAACTCCCAAGCAAATGGATGAATT...GCCAGGCCAGTTCAAGCCATCTTTGCCTAGTCCTCTGGAATATAAGTTGGCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGCCCACAGAACAGGCATaGCCAGCCGATCATCGCAGA +
Preference number: 5 (lower is better)
Translates to: ILLKGWVFLYQSILKATVPTEQA*PADHRR
Trigger: TCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGG...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCAGGATGGGGACCACTTaGGTTATCCCAACAAAAGAA +
Preference number: 5 (lower is better)
Translates to: TLISSGVTASYEAAKYHGRMGTT*VIPTKE
Trigger: TTCTTTTGTTGGGATAACCAAAGTGGTCCCCATCCT...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp ACACTTATCTCATCAGGAGTGACAGCAAGTTATGAAGCAGCCAAGTACCATGGCGTTTGTATCATGGACTaGTTTGAGAATCATCCAGGC +
Preference number: 5 (lower is better)
Translates to: TLISSGVTASYEAAKYHGVCIMD*FENHPG
Trigger: GCCTGGATGATTCTCAAACAAGTCCATGATACAAAC...GCCATGGTACTTGGCTGCTTCATAACTTGCTGTCACTCCTGATGAGATAAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAAATTTGCTTGGGAGTTTaGATGTGGGAAACCGTGAAC +
Preference number: 5 (lower is better)
Translates to: PFHIQVPTWISEKASLEQICLGV*MWETVN
Trigger: GTTCACGGTTTCCCACATCAAAACTCCCAAGCAAAT...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp GAAGCTGCATGGAGGAGCTTAAGTGGTTCTAGTCCTCAACTTCAGTCCGAAATGAATTCATCCATTTGCTaGGGAGTTTTGATGTGGGAA +
Preference number: 5 (lower is better)
Translates to: EAAWRSLSGSSPQLQSEMNSSIC*GVLMWE
Trigger: TTCCCACATCAAAACTCCCAAGCAAATGGATGAATT...CATTTCGGACTGAAGTTGAGGACTAGAACCACTTAAGCTCCTCCATGCAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp TCTGGGATCCCAAGGATGGTTCTGGGCACCCCTAGTCAATCACCTGAGTTAAAAAATGAATTCATCCATTaGCTTGGGAGTTTTGATGTG +
Preference number: 5 (lower is better)
Translates to: SGIPRMVLGTPSQSPELKNEFIH*LGSFDV
Trigger: CACATCAAAACTCCCAAGCAAATGGATGAATTCATT...TTTTAACTCAGGTGATTGACTAGGGGTGCCCAGAACCATCCTTGGGATCCCAGA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp TTGAAGAAAAGTTCCCAGGTAAAGGAAATGGCACGTGGCTTGCCAAGTACATCCTCGATGGTGCAGTTCTaGAAATACGTATCTGTGGAT +
Preference number: 5 (lower is better)
Translates to: LKKSSQVKEMARGLPSTSSMVQF*KYVSVD
Trigger: ATCCACAGATACGTATTTCAAGAACTGCACCATCGA...GGATGTACTTGGCAAGCCACGTGCCATTTCCTTTACCTGGGAACTTTTCTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAAAGGATGGGGACCACTTaGGTTATCCCAACAAAAGAA +
Preference number: 5 (lower is better)
Translates to: PFHIQVPTWISEKASLEQRMGTT*VIPTKE
Trigger: TTCTTTTGTTGGGATAACCAAAGTGGTCCCCATCCT...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAAAGTAGGCAAAAACAATaGGCAGGGAGCCCCCAATCC +
Preference number: 5 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKSRQKQ*AGSPQS
Trigger: GGATTGGGGGCTCCCTGCCAATTGTTTTTGCCTACT...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp TACAAACTTAGTTTACATAATACCCATCCTCACGTTGCTCTGACAAGAGCAAAACAGGCTTCATCATGTTaGCCCATCTCCAGCAGGAAC +
Preference number: 5 (lower is better)
Translates to: YKLSLHNTHPHVALTRAKQASSC*PISSRN
Trigger: GTTCCTGCTGGAGATGGGCAAACATGATGAAGCCTG...TTTTGCTCTTGTCAGAGCAACGTGAGGATGGGTATTATGTAAACTAAGTTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp CCTTTCCACATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAAGTATCATGGACTTGTTaGAGAATCATCCAGGCTTCA +
Preference number: 5 (lower is better)
Translates to: PFHIQVPTWISEKASLEQVSWTC*RIIQAS
Trigger: TGAAGCCTGGATGATTCTCAAACAAGTCCATGATAC...TTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATGTGGAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp AAGCTTCCTTGGAGCAATGAAGAAACGAATGTATCTCATGCCTTTTATTTCCTAAATGATGGTCTCATATaGGTGAGCCAGCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: KLPWSNEETNVSHAFYFLNDGLI*VSQLLL
Trigger: GAGGAGGAGCTGGCTCACCAATATGAGACCATCATT...TAGGAAATAAAAGGCATGAGATACATTCGTTTCTTCATTGCTCCAAGGAAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp ATTTTGCTTAAAGGTTGGGTTTTTCTATATCAGAGTATCCTCAAGGCTACTGTGTTTTCCATGGTAAAGTaGATCGTGGCGCCATGCACG +
Preference number: 5 (lower is better)
Translates to: ILLKGWVFLYQSILKATVFSMVK*IVAPCT
Trigger: CGTGCATGGCGCCACGATCAACTTTACCATGGAAAA...CACAGTAGCCTTGAGGATACTCTGATATAGAAAAACCCAACCTTTAAGCAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTGAGCCGCCAATCATCTaGAGTCTTCCAATTCTGTCC +
Preference number: 5 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPEPPII*SLPILS
Trigger: GGACAGAATTGGAAGACTCAAGATGATTGGCGGCTC...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp AACGAATGTATCTCATGCCTTTTATTTCCTAATGTGCATGCTAATGGCCTGTTTCCAAGCATTCCTTTCTaGGAACTGGACAGACACATG +
Preference number: 5 (lower is better)
Translates to: NECISCLLFPNVHANGLFPSIPF*ELDRHM
Trigger: CATGTGTCTGTCCAGTTCCAAGAAAGGAATGCTTGG...AAACAGGCCATTAGCATGCACATTAGGAAATAAAAGGCATGAGATACATTCGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp CATTCAAGTTCCAACCTGGATCTCAGAAAAAGCTTCCTTGGAGCAATGAAGAAAGTATCATGGACTTGTTaGAGAATCATCCAGGCTTCA +
Preference number: 5 (lower is better)
Translates to: HSSSNLDLRKSFLGAMKKVSWTC*RIIQAS
Trigger: TGAAGCCTGGATGATTCTCAAACAAGTCCATGATAC...TTTCTTCATTGCTCCAAGGAAGCTTTTTCTGAGATCCAGGTTGGAACTTGAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp CACAGGAGAGAGAAGTACCTGCCCTACCAATTTGAAGAAAAGTTCCCAGGTAAAAATGAATTCATCCATTaGCTTGGGAGTTTTGATGTG +
Preference number: 5 (lower is better)
Translates to: HRREKYLPYQFEEKFPGKNEFIH*LGSFDV
Trigger: CACATCAAAACTCCCAAGCAAATGGATGAATTCATT...TTTACCTGGGAACTTTTCTTCAAATTGGTAGGGCAGGTACTTCTCTCTCCTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS-3UTR CAA 90 bp AACGAATGTATCTCATGCCTTTTATTTCCTAATGTGCATGCTAATGGCCTGTTTGTTTGTATCATGGACTaGTTTGAGAATCATCCAGGC +
Preference number: 5 (lower is better)
Translates to: NECISCLLFPNVHANGLFVCIMD*FENHPG
Trigger: GCCTGGATGATTCTCAAACAAGTCCATGATACAAAC...AAACAGGCCATTAGCATGCACATTAGGAAATAAAAGGCATGAGATACATTCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS-3UTR CAA 90 bp ATATTTATATTTGGAGTAATGGGGGTTATCACATCAGACCTGATGCATCTTCCTAATTCATCCATTTGCTaGGGAGTTTTGATGTGGGAA +
Preference number: 5 (lower is better)
Translates to: IFIFGVMGVITSDLMHLPNSSIC*GVLMWE
Trigger: TTCCCACATCAAAACTCCCAAGCAAATGGATGAATT...AGGAAGATGCATCAGGTCTGATGTGATAACCCCCATTACTCCAAATATAAATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
CDS TCA 72 bp TGTTTCCCAGGATGGCCCCAAACTTGCACAGTCCGTTaGGGATGCCGAAGGCCGTGGCCCTCTGGTTGGTGG +
Preference number: 6 (lower is better)
Translates to: CFPGWPQTCTVR*GCRRPWPSGWW
Trigger: CCACCAACCAGAGGGCCACGGCCTTCGGCATCCTCAACGGACTGTGCAAGTTTGGGGCCATCCTGGGAAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CAA 72 bp GTGTTTCCCAGGATGGCCCCAAACTTGCACAGTCCGTaGAGGATGCCGAAGGCCGTGGCCCTCTGGTTGGTG +
Preference number: 6 (lower is better)
Translates to: VFPRMAPNLHSP*RMPKAVALWLV
Trigger: CACCAACCAGAGGGCCACGGCCTTCGGCATCCTCAACGGACTGTGCAAGTTTGGGGCCATCCTGGGAAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CCA 72 bp TCCTCATCTTCCATCCTCTCAGCCATCAAGTCTGCCTaGCCCCCAAGACCATCTGCTCTGGAGGGCGCCATC +
Preference number: 6 (lower is better)
Translates to: SSSSILSAIKSA*PPRPSALEGAI
Trigger: GATGGCGCCCTCCAGAGCAGATGGTCTTGGGGGCCAGGCAGACTTGATGGCTGAGAGGATGGAAGATGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CAA 90 bp GCAAAGATAGTGTTTCCCAGGATGGCCCCAAACTTGCACAGTCCGTaGAGGATGCCGAAGGCCGTGGCCCTCTGGTTGGTGGGATACAGC +
Preference number: 6 (lower is better)
Translates to: AKIVFPRMAPNLHSP*RMPKAVALWLVGYS
Trigger: GCTGTATCCCACCAACCAGAGGGCCACGGCCTTCGGCATCCTCAACGGACTGTGCAAGTTTGGGGCCATCCTGGGAAACACTATCTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CCA 72 bp CACAGTCCGTTGAGGATGCCGAAGGCCGTGGCCCTCTaGTTGGTGGGATACAGCTCAACTGTGATCACATCC +
Preference number: 6 (lower is better)
Translates to: HSPLRMPKAVAL*LVGYSSTVITS
Trigger: GGATGTGATCACAGTTGAGCTGTATCCCACCAACCAGAGGGCCACGGCCTTCGGCATCCTCAACGGACTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CAA 72 bp GAAGCAAAGATAGTGTTTCCCAGGATGGCCCCAAACTaGCACAGTCCGTTGAGGATGCCGAAGGCCGTGGCC +
Preference number: 6 (lower is better)
Translates to: EAKIVFPRMAPN*HSPLRMPKAVA
Trigger: GGCCACGGCCTTCGGCATCCTCAACGGACTGTGCAAGTTTGGGGCCATCCTGGGAAACACTATCTTTGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CCA 72 bp ATGTTTGCCCATCTCCAGCAGGAACCTGGGGCTTTCTaGCATGAACTTCAGAGCCACCATGGACACAGTGGC +
Preference number: 6 (lower is better)
Translates to: MFAHLQQEPGAF*HELQSHHGHSG
Trigger: GCCACTGTGTCCATGGTGGCTCTGAAGTTCATGCCAGAAAGCCCCAGGTTCCTGCTGGAGATGGGCAAACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CAA 90 bp CCAACAAAAGAAGCAAAGATAGTGTTTCCCAGGATGGCCCCAAACTaGCACAGTCCGTTGAGGATGCCGAAGGCCGTGGCCCTCTGGTTG +
Preference number: 6 (lower is better)
Translates to: PTKEAKIVFPRMAPN*HSPLRMPKAVALWL
Trigger: CAACCAGAGGGCCACGGCCTTCGGCATCCTCAACGGACTGTGCAAGTTTGGGGCCATCCTGGGAAACACTATCTTTGCTTCTTTTGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CAA 72 bp CCCTGCACGAAGGAGGAGAGTGAAGCAAAGGAGGCATaGATGGCCAGTGACATGCTGAGGACCTTCTTCCTT +
Preference number: 6 (lower is better)
Translates to: PCTKEESEAKEA*MASDMLRTFFL
Trigger: AAGGAAGAAGGTCCTCAGCATGTCACTGGCCATCAATGCCTCCTTTGCTTCACTCTCCTCCTTCGTGCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS TCA 72 bp ACCACACCGTCAGGCCGTAGTAACTTAAGGCCATGGTaGACCAGACCACAGCCAGAATCAGGGTGTTCATTC +
Preference number: 6 (lower is better)
Translates to: TTPSGRSNLRPW*TRPQPESGCSF
Trigger: GAATGAACACCCTGATTCTGGCTGTGGTCTGGTTCACCATGGCCTTAAGTTACTACGGCCTGACGGTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CAA 90 bp GCTCCATATCCCTGCACGAAGGAGGAGAGTGAAGCAAAGGAGGCATaGATGGCCAGTGACATGCTGAGGACCTTCTTCCTTCCCAGTTTA +
Preference number: 6 (lower is better)
Translates to: APYPCTKEESEAKEA*MASDMLRTFFLPSL
Trigger: TAAACTGGGAAGGAAGAAGGTCCTCAGCATGTCACTGGCCATCAATGCCTCCTTTGCTTCACTCTCCTCCTTCGTGCAGGGATATGGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2
CDS CCA 72 bp GGGCGCCATCTTGGTCTGCTTAGACTTGACATCATCTaGATGAGGGATGCCTTGGTACTCGCCTTCATAGAT +
Preference number: 6 (lower is better)
Translates to: GRHLGLLRLDII*MRDALVLAFID
Trigger: ATCTATGAAGGCGAGTACCAAGGCATCCCTCATCCAGATGATGTCAAGTCTAAGCAGACCAAGATGGCGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085164.7
ENSMUST00000165175.8
ENSMUST00000206344.2