RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SUV39H1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039231

Ensembl transcript IDs: ENSMUST00000115636.4, ENSMUST00000115637.8, ENSMUST00000115638.10

Found 229 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATaGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTA +
Preference number: 1 (lower is better)
Translates to: GSTFVVFKASLRQSV*TRCSTKCLASHRLL
Trigger: TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 90 bp CTGGGGTTGCTGATCCAGCTTGATGTTAGGCTGGTATCTCAGCTCTaGTGTCTGTCTGCCAGGGGGTTGCTTCCTCATACCATTAGAGTA +
Preference number: 1 (lower is better)
Translates to: LGLLIQLDVRLVSQL*CLSARGLLPHTIRV
Trigger: TACTCTAATGGTATGAGGAAGCAACCCCCTGGCAGACAGACATCAGAGCTGAGATACCAGCCTAACATCAAGCTGGATCAGCAACCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR GCA 90 bp AAGGCTTCCCTGAGACAATCTGTATGGACCAGGTGCTCTACCAAGTaGCTGGCATCACATCGCCTTCTAGTCGATGCACATTACTGTCTT +
Preference number: 1 (lower is better)
Translates to: KASLRQSVWTRCSTK*LASHRLLVDAHYCL
Trigger: AAGACAGTAATGTGCATCGACTAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTCTCAGGGAAGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR GCA 90 bp TTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACCAGGTaGTCTACCAAGTGCCTGGCATCACATCGCCTTCTAGTCGATGCA +
Preference number: 1 (lower is better)
Translates to: FVVFKASLRQSVWTR*STKCLASHRLLVDA
Trigger: TGCATCGACTAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR CCA 90 bp GTCCTAAAGAACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATaGTACTCTGTATTACATAGCACCTTGCCTGTTAGGATGCGGTTC +
Preference number: 1 (lower is better)
Translates to: VLKNRETVSAIQDWE*YSVLHSTLPVRMRF
Trigger: GAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR CCA 90 bp GGAAGTATGGGCAGGAAACATATATACAAAATACACACACAGACCTaGCATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGG +
Preference number: 1 (lower is better)
Translates to: GSMGRKHIYKIHTQT*HLVAGYRVSHRALW
Trigger: CCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATGCCAGGTCTGTGTGTGTATTTTGTATATATGTTTCCTGCCCATACTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 90 bp CAGTACTTCACAGGGAGAAAGAACCTAAACAACCAAGAGACAAAGTaGTTCCTGCTGAGTGGTAGGAGTGGGATACAACCTTGGTACTGT +
Preference number: 1 (lower is better)
Translates to: QYFTGRKNLNNQETK*FLLSGRSGIQPWYC
Trigger: ACAGTACCAAGGTTGTATCCCACTCCTACCACTCAGCAGGAATCACTTTGTCTCTTGGTTGTTTAGGTTCTTTCTCCCTGTGAAGTACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR TCA 90 bp CATTCTGATGGCATTTGGGCAACTACTTTTCAGACTTGCAACTGTTaGGACCCTATAGGTCTTAAGGTTAATACCAGCCAGCATCAAAAG +
Preference number: 1 (lower is better)
Translates to: HSDGIWATTFQTCNC*DPIGLKVNTSQHQK
Trigger: CTTTTGATGCTGGCTGGTATTAACCTTAAGACCTATAGGGTCTCAACAGTTGCAAGTCTGAAAAGTAGTTGCCCAAATGCCATCAGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 90 bp CTTTTGTACATTTCTAGGCAGTTAACTGAGACAAGTGGACCCAGGTaGATACTTGGAGCTGACAAGTATTTTTGGCCTAGACATTGCCTT +
Preference number: 1 (lower is better)
Translates to: LLYISRQLTETSGPR*ILGADKYFWPRHCL
Trigger: AAGGCAATGTCTAGGCCAAAAATACTTGTCAGCTCCAAGTATTCACCTGGGTCCACTTGTCTCAGTTAACTGCCTAGAAATGTACAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 90 bp TGTTTTACAGCCGAGTTCCTCAATCTGGACCTCCATTATATGACATaGATTCCAACTCTAGGGAATCATGATGTGAAAAATATGTTTCTG +
Preference number: 1 (lower is better)
Translates to: CFTAEFLNLDLHYMT*IPTLGNHDVKNMFL
Trigger: CAGAAACATATTTTTCACATCATGATTCCCTAGAGTTGGAATTCATGTCATATAATGGAGGTCCAGATTGAGGAACTCGGCTGTAAAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCAAGGCTTCCTGGAGGTaGGGAAGCAGGGGGCAAGGC +
Preference number: 2 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVKASWR*GSRGQG
Trigger: GCCTTGCCCCCTGCTTCCCCACCTCCAGGAAGCCTT...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCAGGCTCTGGGGTTGCTaGTCCAGCTTGATGTTAGGC +
Preference number: 2 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFRLWGC*SSLMLG
Trigger: GCCTAACATCAAGCTGGATCAGCAACCCCAGAGCCT...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp ATTAACTCAACAACACAGTTTATTGGTGTGCACTCCAGGCTAGGGAGGGCTGAGAAGGCTTCCTGGAGGTaGGGAAGCAGGGGGCAAGGC +
Preference number: 2 (lower is better)
Translates to: INSTTQFIGVHSRLGRAEKASWR*GSRGQG
Trigger: GCCTTGCCCCCTGCTTCCCCACCTCCAGGAAGCCTT...CTCAGCCCTCCCTAGCCTGGAGTGCACACCAATAAACTGTGTTGTTGAGTTAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CAGAAAGGTCCTAAAGAACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGCAGCACTTGGGAGGCTaGGGCAGGCGGATTTCTGAG +
Preference number: 2 (lower is better)
Translates to: QKGPKEQGNCQCHPRLGMQHLGG*GRRISE
Trigger: CTCAGAAATCCGCCTGCCTCAGCCTCCCAAGTGCTG...CATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGACCTTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR CCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTGTAGGAGAGGAAGGTaGCTTCAGGCCCCTTCAGTT +
Preference number: 2 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFCRRGR*LQAPSV
Trigger: AACTGAAGGGGCCTGAAGCCACCTTCCTCTCCTACA...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTATAGCTCTGAAAGTATaGAGAACTCATGCTTCCTCC +
Preference number: 2 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPIALKV*RTHASS
Trigger: GGAGGAAGCATGAGTTCTCCATACTTTCAGAGCTAT...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR TCA 90 bp ATTAACTCAACAACACAGTTTATTGGTGTGCACTCCAGGCTAGGGAGGGCTGAGAGGCTCTGGGGTTGCTaGTCCAGCTTGATGTTAGGC +
Preference number: 2 (lower is better)
Translates to: INSTTQFIGVHSRLGRAERLWGC*SSLMLG
Trigger: GCCTAACATCAAGCTGGATCAGCAACCCCAGAGCCT...CTCAGCCCTCCCTAGCCTGGAGTGCACACCAATAAACTGTGTTGTTGAGTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATCTAGTGGCCATCAAATaGCAAGGCTGGGTTTCCAGC +
Preference number: 2 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYLVAIK*QGWVSS
Trigger: GCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATAGGTGCTCTACCAAGTaGCTGGCATCACATCGCCTT +
Preference number: 2 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYRCSTK*LASHRL
Trigger: AAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCT...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACTGTAGGAGAGGAAGGTaGCTTCAGGCCCCTTCAGTT +
Preference number: 2 (lower is better)
Translates to: SGLHLCGFQGFPETICMDCRRGR*LQAPSV
Trigger: AACTGAAGGGGCCTGAAGCCACCTTCCTCTCCTACA...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTAATCAAATGCCAAGGCTaGGTTTCCAGCAAGTCCAGC +
Preference number: 2 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLIKCQG*VSSKSS
Trigger: GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGAT...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATCACATAGGGCACTCTaGGCACAGGAAGTCAGGAAA +
Preference number: 2 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETSHRAL*AQEVRK
Trigger: TTTCCTGACTTCCTGTGCCCAGAGTGCCCTATGTGA...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CAGAAAGGTCCTAAAGAACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGGGGACTGACCCTTCCTaGGGCTTTTTCTCTACCTTG +
Preference number: 2 (lower is better)
Translates to: QKGPKEQGNCQCHPRLGMGTDPS*GFFSTL
Trigger: CAAGGTAGAGAAAAAGCCTCAGGAAGGGTCAGTCCC...CATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGACCTTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR TCA 90 bp AATGGTACTCTGTATTACATAGCACCTTGCCTGTTAGGATGCGGTTCAGTGGAGCAAAGCCCAGGGGACTaGCCCTTCCTGAGGCTTTTT +
Preference number: 2 (lower is better)
Translates to: NGTLYYIAPCLLGCGSVEQSPGD*PFLRLF
Trigger: AAAAAGCCTCAGGAAGGGTCAGTCCCCTGGGCTTTG...CTCCACTGAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR TCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCAGACAAGGCTCTGATTaGTGGTCATCCTTGACAAGA +
Preference number: 2 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFRQGSD*WSSLTR
Trigger: TCTTGTCAAGGATGACCATCAATCAGAGCCTTGTCT...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTACAATCTCATCATaGGGAAGGCTGAGACAGGAA +
Preference number: 2 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLPTISS*GRLRQE
Trigger: TTCCTGTCTCAGCCTTCCTCATGATGAGATTGTAGG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCAGACTTGCAACTGTTaGGACCCTATAGGTCTTAAG +
Preference number: 2 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFQTCNC*DPIGLK
Trigger: CTTAAGACCTATAGGGTCTCAACAGTTGCAAGTCTG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCAGTAATGAAGAGGCCTaGAACAGGTCACACACAAGC +
Preference number: 2 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSSNEEA*NRSHTS
Trigger: GCTTGTGTGTGACCTGTTGCAGGCCTCTTCATTACT...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACAAGACAAGGCTCTGATTaGTGGTCATCCTTGACAAGA +
Preference number: 2 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETRQGSD*WSSLTR
Trigger: TCTTGTCAAGGATGACCATCAATCAGAGCCTTGTCT...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCCAGACTTGCAACTGTTaGGACCCTATAGGTCTTAAG +
Preference number: 2 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSQTCNC*DPIGLK
Trigger: CTTAAGACCTATAGGGTCTCAACAGTTGCAAGTCTG...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATAGTAATGAAGAGGCCTaGAACAGGTCACACACAAGC +
Preference number: 2 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYSNEEA*NRSHTS
Trigger: GCTTGTGTGTGACCTGTTGCAGGCCTCTTCATTACT...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATCTTATCTCCCAGCTCTaGAGATTGCCTTTTCTTTCC +
Preference number: 2 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYLISQL*RLPFLS
Trigger: GGAAAGAAAAGGCAATCTTCAGAGCTGGGAGATAAG...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCGTTCTAACCTTTCTGTaGGGCTTTCAAAGAGGTATT +
Preference number: 2 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVVLTFL*GFQRGI
Trigger: AATACCTCTTTGAAAGCCCCACAGAAAGGTTAGAAC...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp ACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGGTACTCTGTATTACATACAAAGTGATTCCTGCTaGGTGGTAGGAGTGGGATAC +
Preference number: 2 (lower is better)
Translates to: TGKLSVPSKTGNGTLYYIQSDSC*VVGVGY
Trigger: GTATCCCACTCCTACCACTCAGCAGGAATCACTTTG...TATGTAATACAGAGTACCATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR TCA 90 bp AATGGTACTCTGTATTACATAGCACCTTGCCTGTTAGGATGCGGTTCAGTGGAGAACCAAGAGACAAAGTaGTTCCTGCTGAGTGGTAGG +
Preference number: 2 (lower is better)
Translates to: NGTLYYIAPCLLGCGSVENQETK*FLLSGR
Trigger: CCTACCACTCAGCAGGAATCACTTTGTCTCTTGGTT...CTCCACTGAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR CCA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCCATTCTGATGGCATTTaGGCAACTACTTTTCAGACT +
Preference number: 2 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSHSDGI*ATTFQT
Trigger: AGTCTGAAAAGTAGTTGCCCAAATGCCATCAGAATG...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCAGAATACCTAGATCTTaGTTCCAGCTTCTAGTAGTT +
Preference number: 2 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVRIPRS*FQLLVV
Trigger: AACTACTAGAAGCTGGAACCAAGATCTAGGTATTCT...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCTCCATTATATGACATaGATTCCAACTCTAGGGAAT +
Preference number: 2 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLLHYMT*IPTLGN
Trigger: ATTCCCTAGAGTTGGAATTCATGTCATATAATGGAG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCCTCCATTATATGACATaGATTCCAACTCTAGGGAAT +
Preference number: 2 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSLHYMT*IPTLGN
Trigger: ATTCCCTAGAGTTGGAATTCATGTCATATAATGGAG...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTCCTACAATCTCATCATaGGGAAGGCTGAGACAGGAA +
Preference number: 2 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLPTISS*GRLRQE
Trigger: TTCCTGTCTCAGCCTTCCTCATGATGAGATTGTAGG...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp CAGAAAGGTCCTAAAGAACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGGTCTATATACCTGACTaGCCAAAATCATTCAGGGGT +
Preference number: 2 (lower is better)
Translates to: QKGPKEQGNCQCHPRLGMVYIPD*PKSFRG
Trigger: ACCCCTGAATGATTTTGGGCAGTCAGGTATATAGAC...CATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGACCTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR GCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATATAGAGCTGCAGAGATaGTGTCCAAAACAAAGAATC +
Preference number: 2 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYIELQR*CPKQRI
Trigger: GATTCTTTGTTTTGGACAGCATCTCTGCAGCTCTAT...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACGTTCTAACCTTTCTGTaGGGCTTTCAAAGAGGTATT +
Preference number: 2 (lower is better)
Translates to: SGLHLCGFQGFPETICMDVLTFL*GFQRGI
Trigger: AATACCTCTTTGAAAGCCCCACAGAAAGGTTAGAAC...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR TCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTCTTATCTCCCAGCTCTaGAGATTGCCTTTTCTTTCC +
Preference number: 2 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLLISQL*RLPFLS
Trigger: GGAAAGAAAAGGCAATCTTCAGAGCTGGGAGATAAG...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp TTAATACCAGCCAGCATCAAAAGCACAAAGAGCGGAACCAGCCTTATCTCCCAGATAGAGCTGCAGAGATaGTGTCCAAAACAAAGAATC +
Preference number: 2 (lower is better)
Translates to: LIPASIKSTKSGTSLISQIELQR*CPKQRI
Trigger: GATTCTTTGTTTTGGACAGCATCTCTGCAGCTCTAT...CTGGGAGATAAGGCTGGTTCCGCTCTTTGTGCTTTTGATGCTGGCTGGTATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTAACAAAAATCTTAGCTaGGTTTACACCTACAATCTC +
Preference number: 2 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLNKNLS*VYTYNL
Trigger: GAGATTGTAGGTGTAAACCCAGCTAAGATTTTTGTT...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR GCA 90 bp CAGAATGCATGTTCAGTATTCTCTAGTATTTTCTACCTGGTGAAAATAATGTGGTGGGCTCCTGGAAACTaGTGTGTCCAGAGTGGAGGA +
Preference number: 2 (lower is better)
Translates to: QNACSVFSSIFYLVKIMWWAPGN*CVQSGG
Trigger: TCCTCCACTCTGGACACAGCAGTTTCCAGGAGCCCA...CCACATTATTTTCACCAGGTAGAAAATACTAGAGAATACTGAACATGCATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR GCA 90 bp CAGAAAGGTCCTAAAGAACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGAGAAAGACAATGTCATaGCAAGACAGAAGTCAAGAA +
Preference number: 2 (lower is better)
Translates to: QKGPKEQGNCQCHPRLGMRKTMS*QDRSQE
Trigger: TTCTTGACTTCTGTCTTGGCATGACATTGTCTTTCT...CATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGACCTTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR CCA 90 bp ATGTGGAAACAAAAATCTAGAACACAGAAAGGTCCTAAAGAACAGGGAAACTGTCTGCTGTGTCCAGAGTaGAGGAGCAAGGTCACAAAG +
Preference number: 2 (lower is better)
Translates to: MWKQKSRTQKGPKEQGNCLLCPE*RSKVTK
Trigger: CTTTGTGACCTTGCTCCTCCACTCTGGACACAGCAG...ACAGTTTCCCTGTTCTTTAGGACCTTTCTGTGTTCTAGATTTTTGTTTCCACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR CAA 90 bp TCACTTTTTGAGCATTTTGGATTATCTAAGTTTACAGAAGTACCATaGACAGTACTTCACAGGGAGAAAGAACCTAAACAACCAAGAGAC +
Preference number: 2 (lower is better)
Translates to: SLFEHFGLSKFTEVP*TVLHREKEPKQPRD
Trigger: GTCTCTTGGTTGTTTAGGTTCTTTCTCCCTGTGAAGTACTGTCAATGGTACTTCTGTAAACTTAGATAATCCAAAATGCTCAAAAAGTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR GCA 72 bp GGGCTGAGGGGTACAGAGAGAACCAGATTCAGTCCATaGCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAA +
Preference number: 3 (lower is better)
Translates to: GLRGTERTRFSP*LKVSLGSMGRK
Trigger: TTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTTCTCTCTGTACCCCTCAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 72 bp CAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTaGCCCTTCCTGAGGCTTTTTCTCTACCTTGGTCAA +
Preference number: 3 (lower is better)
Translates to: QSGGARSQSPGD*PFLRLFLYLGQ
Trigger: TTGACCAAGGTAGAGAAAAAGCCTCAGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR TCA 72 bp GTGGAGGCAGACAAGGCTCTGATTGATGGTCATCCTTaGCAAGAGGGTAGCTGTAGGAGAGGAAGGTGGCTT +
Preference number: 3 (lower is better)
Translates to: VEADKALIDGHP*QEGSCRRGRWL
Trigger: AAGCCACCTTCCTCTCCTACAGCTACCCTCTTGTCAAGGATGACCATCAATCAGAGCCTTGTCTGCCTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR GCA 72 bp AGGGGTGAAGATAGCTCTGAAAGTATGGAGAACTCATaGTTCCTCCGGCTCACTGGGCCACTGTGGGATACA +
Preference number: 3 (lower is better)
Translates to: RGEDSSESMENS*FLRLTGPLWDT
Trigger: TGTATCCCACAGTGGCCCAGTGAGCCGGAGGAAGCATGAGTTCTCCATACTTTCAGAGCTATCTTCACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR CAA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATTCTGGGCTCCACCTTaGTGGTTTTCAAGGCTTCCC +
Preference number: 3 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETFWAPP*WFSRLP
Trigger: GGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGAA...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CAA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTAAACTAACTTGTTTCTaGCTTGGAATGACCTCTAGG +
Preference number: 3 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPKLTCF*LGMTSR
Trigger: CCTAGAGGTCATTCCAAGCAAGAAACAAGTTAGTTT...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR CAA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACCTGTCTGCCAGGGGGTaGCTTCCTCATACCATTAGA +
Preference number: 3 (lower is better)
Translates to: SGLHLCGFQGFPETICMDLSARG*LPHTIR
Trigger: TCTAATGGTATGAGGAAGCAACCCCCTGGCAGACAG...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 72 bp AGGGTAGGTGAGGACAAGTGGAGGCAGACAAGGCTCTaGTTGATGGTCATCCTTGACAAGAGGGTAGCTGTA +
Preference number: 3 (lower is better)
Translates to: RVGEDKWRQTRL*LMVILDKRVAV
Trigger: TACAGCTACCCTCTTGTCAAGGATGACCATCAATCAGAGCCTTGTCTGCCTCCACTTGTCCTCACCTACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CAA 90 bp TTAATACCAGCCAGCATCAAAAGCACAAAGAGCGGAACCAGCCTTATCTCCCAGCTGTCTGCCAGGGGGTaGCTTCCTCATACCATTAGA +
Preference number: 3 (lower is better)
Translates to: LIPASIKSTKSGTSLISQLSARG*LPHTIR
Trigger: TCTAATGGTATGAGGAAGCAACCCCCTGGCAGACAG...CTGGGAGATAAGGCTGGTTCCGCTCTTTGTGCTTTTGATGCTGGCTGGTATTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CAA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACACAAAGGCTCTGGGGTaGCTGATCCAGCTTGATGTT +
Preference number: 3 (lower is better)
Translates to: SGLHLCGFQGFPETICMDTKALG*LIQLDV
Trigger: AACATCAAGCTGGATCAGCAACCCCAGAGCCTTTGT...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR CCA 72 bp CAAAATCATTCAGGGGTGAAGATAGCTCTGAAAGTATaGAGAACTCATGCTTCCTCCGGCTCACTGGGCCAC +
Preference number: 3 (lower is better)
Translates to: QNHSGVKIALKV*RTHASSGSLGH
Trigger: GTGGCCCAGTGAGCCGGAGGAAGCATGAGTTCTCCATACTTTCAGAGCTATCTTCACCCCTGAATGATTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR GCA 72 bp AAGACTGGGAATGGTACTCTGTATTACATAGCACCTTaGCTGTTAGGATGCGGTTCAGTGGAGGAGTACTGC +
Preference number: 3 (lower is better)
Translates to: KTGNGTLYYIAP*LLGCGSVEEYC
Trigger: GCAGTACTCCTCCACTGAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATTCCCAGTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR CCA 72 bp TTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATaGACCAGGTGCTCTACCAAGTGCCTGGCATCACAT +
Preference number: 3 (lower is better)
Translates to: FVVFKASLRQSV*TRCSTKCLASH
Trigger: ATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CAA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCAACTACTTTTCAGACTaGCAACTGTTGAGACCCTAT +
Preference number: 3 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFNYFSD*QLLRPY
Trigger: ATAGGGTCTCAACAGTTGCAAGTCTGAAAAGTAGTT...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR-3UTR CAA 90 bp AGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGGATCCCTGTGAGGAACCCTTaGAGTATCCACAGACAATGT +
Preference number: 3 (lower is better)
Translates to: RGHMERALKVFGDTIRRIPVRNP*SIHRQC
Trigger: ACATTGTCTGTGGATACTCAAAGGGTTCCTCACAGG...GATCCTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR CCA 72 bp AACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATaGTACTCTGTATTACATAGCACCTTGCCTGTTAGG +
Preference number: 3 (lower is better)
Translates to: NRETVSAIQDWE*YSVLHSTLPVR
Trigger: CCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR-3UTR CAA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTAACTACTTTTCAGACTaGCAACTGTTGAGACCCTAT +
Preference number: 3 (lower is better)
Translates to: AKAGFPASPALYFLMVKLNYFSD*QLLRPY
Trigger: ATAGGGTCTCAACAGTTGCAAGTCTGAAAAGTAGTT...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 72 bp ACAGGGAGAAAGAACCTAAACAACCAAGAGACAAAGTaGTTCCTGCTGAGTGGTAGGAGTGGGATACAACCT +
Preference number: 3 (lower is better)
Translates to: TGRKNLNNQETK*FLLSGRSGIQP
Trigger: AGGTTGTATCCCACTCCTACCACTCAGCAGGAATCACTTTGTCTCTTGGTTGTTTAGGTTCTTTCTCCCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR TCA 72 bp GGCATTTGGGCAACTACTTTTCAGACTTGCAACTGTTaGGACCCTATAGGTCTTAAGGTTAATACCAGCCAG +
Preference number: 3 (lower is better)
Translates to: GIWATTFQTCNC*DPIGLKVNTSQ
Trigger: CTGGCTGGTATTAACCTTAAGACCTATAGGGTCTCAACAGTTGCAAGTCTGAAAAGTAGTTGCCCAAATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR GCA 72 bp ACACAGAAAGGTCCTAAAGAACAGGGAAACTGTCAGTaGCATCCAAGACTGGGAATGGTACTCTGTATTACA +
Preference number: 3 (lower is better)
Translates to: TQKGPKEQGNCQ*HPRLGMVLCIT
Trigger: TGTAATACAGAGTACCATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGACCTTTCTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR TCA 72 bp ATTTCTAGGCAGTTAACTGAGACAAGTGGACCCAGGTaGATACTTGGAGCTGACAAGTATTTTTGGCCTAGA +
Preference number: 3 (lower is better)
Translates to: ISRQLTETSGPR*ILGADKYFWPR
Trigger: TCTAGGCCAAAAATACTTGTCAGCTCCAAGTATTCACCTGGGTCCACTTGTCTCAGTTAACTGCCTAGAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR GCA 72 bp TCCAAACACCAGACTTACTACATAGAGCTGCAGAGATaGTGTCCAAAACAAAGAATCTGTTTTACAGCCGAG +
Preference number: 3 (lower is better)
Translates to: SKHQTYYIELQR*CPKQRICFTAE
Trigger: CTCGGCTGTAAAACAGATTCTTTGTTTTGGACAGCATCTCTGCAGCTCTATGTAGTAAGTCTGGTGTTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
3UTR TCA 72 bp GCCGAGTTCCTCAATCTGGACCTCCATTATATGACATaGATTCCAACTCTAGGGAATCATGATGTGAAAAAT +
Preference number: 3 (lower is better)
Translates to: AEFLNLDLHYMT*IPTLGNHDVKN
Trigger: ATTTTTCACATCATGATTCCCTAGAGTTGGAATTCATGTCATATAATGGAGGTCCAGATTGAGGAACTCGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTGGCTGCGCTTGGCATTaGGCTCTTGTTCCCAACGCT +
Preference number: 4 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPGCAWH*ALVPNA
Trigger: AGCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCC...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR GCA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTAGCAACAGCGGGAGTTaGACTCGTAGATGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPSNSGS*TRRWAA
Trigger: GGCAGCCCATCTACGAGTGCAACTCCCGCTGTTGCT...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTGTGATCCGCCCCAGGTaGCTGCGCTTGGCATTGAGC +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLVIRPR*LRLALS
Trigger: GCTCAATGCCAAGCGCAGCCACCTGGGGCGGATCAC...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTAGTTGCACTCGTAGATaGGCTGCCCAGCTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPSCTRR*AAQLSV
Trigger: GACTGAAAGCTGGGCAGCCCATCTACGAGTGCAACT...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR GCA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTGGATCTTTTCCAGCGTaGGGACACCCCAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: AKAGFPASPALYFLMVKLGSFPA*GHPSLG
Trigger: GCCGAGGCTGGGGTGTCCGCACGCTGGAAAAGATCC...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCGTGCCCGCCTCTGCTTaGCCTTCTGCACCAGGTAAT +
Preference number: 4 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVVPASA*PSAPGN
Trigger: ATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCAC...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTAGGTCAAAGAGGTAGGTaGCGCCCTGGCGGTCGTAGA +
Preference number: 4 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLGQRGR*RPGGRR
Trigger: TCTACGACCGCCAGGGCGCCACCTACCTCTTTGACC...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTGGCTGCGCTTGGCATTaGGCTCTTGTTCCCAACGCT +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLGCAWH*ALVPNA
Trigger: AGCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCC...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCCGCTCTGCCTCCTCTaGGGTAATAATCTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFPLCLL*GNNLSH
Trigger: GTGGGAGAGATTATTACCTCAGAGGAGGCAGAGCGG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACAAGCAACAGCGGGAGTTaGACTCGTAGATGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETSNSGS*TRRWAA
Trigger: GGCAGCCCATCTACGAGTGCAACTCCCGCTGTTGCT...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCGCCAACAGACAGTCCTaGCACTCACAGCCAACAGCT +
Preference number: 4 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVANRQS*HSQPTA
Trigger: AGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGC...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACGGTCAAAGAGGTAGGTaGCGCCCTGGCGGTCGTAGA +
Preference number: 4 (lower is better)
Translates to: SGLHLCGFQGFPETICMDGQRGR*RPGGRR
Trigger: TCTACGACCGCCAGGGCGCCACCTACCTCTTTGACC...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTCACAGGTCCTGCAGTTaGTTCCAAGAAGATTTACAG +
Preference number: 4 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPHRSCS*FQEDLQ
Trigger: CTGTAAATCTTCTTGGAATCAACTGCAGGACCTGTG...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR TCA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTACCGCTCTGCCTCCTCTaGGGTAATAATCTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLPLCLL*GNNLSH
Trigger: GTGGGAGAGATTATTACCTCAGAGGAGGCAGAGCGG...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACACAGCCTCCAGTGGGTaGCAACAGACAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: SGLHLCGFQGFPETICMDTASSG*QQTVLA
Trigger: TGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGT...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTAAAACTTGTGCAGGGATaGTCCAGGGCAACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLKLVQG*SRATAS
Trigger: GGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTT...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATAGCAACAGCGGGAGTTaGACTCGTAGATGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYSNSGS*TRRWAA
Trigger: GGCAGCCCATCTACGAGTGCAACTCCCGCTGTTGCT...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp AGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGGATCGTGATCCGCCCCAGGTaGCTGCGCTTGGCATTGAGC +
Preference number: 4 (lower is better)
Translates to: RGHMERALKVFGDTIRRIVIRPR*LRLALS
Trigger: GCTCAATGCCAAGCGCAGCCACCTGGGGCGGATCAC...GATCCTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCAGCCAACAGCTACCTaGTTGAGGGTGATGCCCTCA +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLQPTAT*LRVMPS
Trigger: TGAGGGCATCACCCTCAACCAGGTAGCTGTTGGCTG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCCAGCCAACAGCTACCTaGTTGAGGGTGATGCCCTCA +
Preference number: 4 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSQPTAT*LRVMPS
Trigger: TGAGGGCATCACCCTCAACCAGGTAGCTGTTGGCTG...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATGGCAACAGCCTCCAGTaGGTGCCAACAGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYGNSLQ*VPTDSP
Trigger: AGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCC...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCAGCCAGGCCAAAGTTaGAGTCCATTCGGGTACTCT +
Preference number: 4 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFQPGQS*SPFGYS
Trigger: AGAGTACCCGAATGGACTCCAACTTTGGCCTGGCTG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACAAACTTGTGCAGGGATaGTCCAGGGCAACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SGLHLCGFQGFPETICMDKLVQG*SRATAS
Trigger: GGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTT...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTGGATCTTTTCCAGCGTaGGGACACCCCAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLGSFPA*GHPSLG
Trigger: GCCGAGGCTGGGGTGTCCGCACGCTGGAAAAGATCC...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCAGGACAAGAAAGCTTaGCTAGTCGGCACAGGTCCT +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLQDKKA*LVGTGP
Trigger: AGGACCTGTGCCGACTAGCCAAGCTTTCTTGTCCTG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp TTAATACCAGCCAGCATCAAAAGCACAAAGAGCGGAACCAGCCTTATCTCCCAGGTGCCCGCCTCTGCTTaGCCTTCTGCACCAGGTAAT +
Preference number: 4 (lower is better)
Translates to: LIPASIKSTKSGTSLISQVPASA*PSAPGN
Trigger: ATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCAC...CTGGGAGATAAGGCTGGTTCCGCTCTTTGTGCTTTTGATGCTGGCTGGTATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTGTGATCCGCCCCAGGTaGCTGCGCTTGGCATTGAGC +
Preference number: 4 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLVIRPR*LRLALS
Trigger: GCTCAATGCCAAGCGCAGCCACCTGGGGCGGATCAC...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACAAGTTGCACTCGTAGATaGGCTGCCCAGCTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETSCTRR*AAQLSV
Trigger: GACTGAAAGCTGGGCAGCCCATCTACGAGTGCAACT...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACACTGGACTACACGGTTTaGGCAGTCATAGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETLDYTV*AVIATA
Trigger: TGCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAG...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTACTGGACTACACGGTTTaGGCAGTCATAGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLLDYTV*AVIATA
Trigger: TGCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAG...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCCAGATGGTTCTTGTaGCAAAGAATGCGATGCGGG +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLPRWFL*QRMRCG
Trigger: CCCGCATCGCATTCTTTGCCACAAGAACCATCTGGG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATCCTCGCCCGCCCAGATaGTTCTTGTGGCAAAGAATG +
Preference number: 4 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYPRPPR*FLWQRM
Trigger: CATTCTTTGCCACAAGAACCATCTGGGCGGGCGAGG...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTTACGGACTCGTTTCTTaGGGGAGCCGGGGAGCCCAG +
Preference number: 4 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLYGLVS*GSRGAQ
Trigger: CTGGGCTCCCCGGCTCCCCCAAGAAACGAGTCCGTA...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CTGTGTCCAGAGTGGAGGAGCAAGGTCACAAAGCCCAGGGGACTGACCCTTCCTCTTTCTAAGTCCTTGTaGAACTGCTTAAGAACTCGT +
Preference number: 4 (lower is better)
Translates to: LCPEWRSKVTKPRGLTLPLSKSL*NCLRTR
Trigger: ACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAG...AGGAAGGGTCAGTCCCCTGGGCTTTGTGACCTTGCTCCTCCACTCTGGACACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp CAGAAAGGTCCTAAAGAACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGGCCAACAGACAGTCCTaGCACTCACAGCCAACAGCT +
Preference number: 4 (lower is better)
Translates to: QKGPKEQGNCQCHPRLGMANRQS*HSQPTA
Trigger: AGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGC...CATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGTTCTTTAGGACCTTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp AATGGTACTCTGTATTACATAGCACCTTGCCTGTTAGGATGCGGTTCAGTGGAGGGCAACAGCCTCCAGTaGGTGCCAACAGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: NGTLYYIAPCLLGCGSVEGNSLQ*VPTDSP
Trigger: AGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCC...CTCCACTGAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATAGTTGCACTCGTAGATaGGCTGCCCAGCTTTCAGTC +
Preference number: 4 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYSCTRR*AAQLSV
Trigger: GACTGAAAGCTGGGCAGCCCATCTACGAGTGCAACT...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATCCCAGATGGTTCTTGTaGCAAAGAATGCGATGCGGG +
Preference number: 4 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYPRWFL*QRMRCG
Trigger: CCCGCATCGCATTCTTTGCCACAAGAACCATCTGGG...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTCAGCCAGGCCAAAGTTaGAGTCCATTCGGGTACTCT +
Preference number: 4 (lower is better)
Translates to: AKAGFPASPALYFLMVKLQPGQS*SPFGYS
Trigger: AGAGTACCCGAATGGACTCCAACTTTGGCCTGGCTG...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCACAGGTCCTGCAGTTaGTTCCAAGAAGATTTACAG +
Preference number: 4 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFHRSCS*FQEDLQ
Trigger: CTGTAAATCTTCTTGGAATCAACTGCAGGACCTGTG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTACAGCCTCCAGTGGGTaGCAACAGACAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLTASSG*QQTVLA
Trigger: TGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGT...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCCCGTTGTCCCACATTTaGATTCAATACGGACTCGTT +
Preference number: 4 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVPLSHI*IQYGLV
Trigger: AACGAGTCCGTATTGAATGCAAATGTGGGACAACGG...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp AATGGTGGCACATATCTTTATTCCCAGCACTGGAGAAGCAGAAGCAGGCTTCTCCAGGACAAGAAAGCTTaGCTAGTCGGCACAGGTCCT +
Preference number: 4 (lower is better)
Translates to: NGGTYLYSQHWRSRSRLLQDKKA*LVGTGP
Trigger: AGGACCTGTGCCGACTAGCCAAGCTTTCTTGTCCTG...GAGAAGCCTGCTTCTGCTTCTCCAGTGCTGGGAATAAAGATATGTGCCACCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATCTGCACCAGGTAATTaGCTAGGTTTGGGTCCAGAT +
Preference number: 4 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETSAPGN*LGLGPD
Trigger: ATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGA...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp ACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGGTACTCTGTATTACATAGTGCCCGCCTCTGCTTaGCCTTCTGCACCAGGTAAT +
Preference number: 4 (lower is better)
Translates to: TGKLSVPSKTGNGTLYYIVPASA*PSAPGN
Trigger: ATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCAC...TATGTAATACAGAGTACCATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp AATGGTACTCTGTATTACATAGCACCTTGCCTGTTAGGATGCGGTTCAGTGGAGCAGCCAACAGCTACCTaGTTGAGGGTGATGCCCTCA +
Preference number: 4 (lower is better)
Translates to: NGTLYYIAPCLLGCGSVEQPTAT*LRVMPS
Trigger: TGAGGGCATCACCCTCAACCAGGTAGCTGTTGGCTG...CTCCACTGAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTGGCAACAGCCTCCAGTaGGTGCCAACAGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLGNSLQ*VPTDSP
Trigger: AGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCC...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp AATGGTGGCACATATCTTTATTCCCAGCACTGGAGAAGCAGAAGCAGGCTTCTCCTGGACTACACGGTTTaGGCAGTCATAGCCACAGCA +
Preference number: 4 (lower is better)
Translates to: NGGTYLYSQHWRSRSRLLLDYTV*AVIATA
Trigger: TGCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAG...GAGAAGCCTGCTTCTGCTTCTCCAGTGCTGGGAATAAAGATATGTGCCACCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR TCA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACACACAGGTCCTGCAGTTaGTTCCAAGAAGATTTACAG +
Preference number: 4 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETHRSCS*FQEDLQ
Trigger: CTGTAAATCTTCTTGGAATCAACTGCAGGACCTGTG...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCCATCAAGGTTGTCTATaGATACGTTGTACACCTGCA +
Preference number: 4 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVHQGCL*IRCTPA
Trigger: TGCAGGTGTACAACGTATTCATAGACAACCTTGATG...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCATACATTTTAGATTCTaGCGTGGCTCCCAGGTGTTT +
Preference number: 4 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVIHFRF*RGSQVF
Trigger: AAACACCTGGGAGCCACGGCAGAATCTAAAATGTAT...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCAATACGTTGTACACCTaGAGGTTGGGATCACAACTA +
Preference number: 4 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVNTLYT*RLGSQL
Trigger: TAGTTGTGATCCCAACCTGCAGGTGTACAACGTATT...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCGTTGTCCCACATTTaGATTCAATACGGACTCGTT +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLPLSHI*IQYGLV
Trigger: AACGAGTCCGTATTGAATGCAAATGTGGGACAACGG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACTCTGCACCAGGTAATTaGCTAGGTTTGGGTCCAGAT +
Preference number: 4 (lower is better)
Translates to: SGLHLCGFQGFPETICMDSAPGN*LGLGPD
Trigger: ATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGA...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR TCA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTACATCAAGGTTGTCTATaGATACGTTGTACACCTGCA +
Preference number: 4 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLHQGCL*IRCTPA
Trigger: TGCAGGTGTACAACGTATTCATAGACAACCTTGATG...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp ATGTGGAAACAAAAATCTAGAACACAGAAAGGTCCTAAAGAACAGGGAAACTGTGGATCTTTTCCAGCGTaGGGACACCCCAGCCTCGGC +
Preference number: 4 (lower is better)
Translates to: MWKQKSRTQKGPKEQGNCGSFPA*GHPSLG
Trigger: GCCGAGGCTGGGGTGTCCGCACGCTGGAAAAGATCC...ACAGTTTCCCTGTTCTTTAGGACCTTTCTGTGTTCTAGATTTTTGTTTCCACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCTTTCTAAGTCCTTGTaGAACTGCTTAAGAACTCGT +
Preference number: 4 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFLSKSL*NCLRTR
Trigger: ACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTATACATTTTAGATTCTaGCGTGGCTCCCAGGTGTTT +
Preference number: 4 (lower is better)
Translates to: AKAGFPASPALYFLMVKLIHFRF*RGSQVF
Trigger: AAACACCTGGGAGCCACGGCAGAATCTAAAATGTAT...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp TCTAGTTTTGTAAGAGTGAAAGCCTCTCCTAGTCATCAGTCACTGATATGGATGAAACTTGTGCAGGGATaGTCCAGGGCAACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SSFVRVKASPSHQSLIWMKLVQG*SRATAS
Trigger: GGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTT...CATCCATATCAGTGACTGATGACTAGGAGAGGCTTTCACTCTTACAAAACTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR GCA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCCAAAATGAGAGATGTTaGCATAATAAGCGGCATCCA +
Preference number: 4 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSQNERC*HNKRHP
Trigger: TGGATGCCGCTTATTATGGCAACATCTCTCATTTTG...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCAAAATGAGAGATGTTaGCATAATAAGCGGCATCCA +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLQNERC*HNKRHP
Trigger: TGGATGCCGCTTATTATGGCAACATCTCTCATTTTG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCTTTCTAAGTCCTTGTaGAACTGCTTAAGAACTCGT +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLLSKSL*NCLRTR
Trigger: ACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAG...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp ATGTGGAAACAAAAATCTAGAACACAGAAAGGTCCTAAAGAACAGGGAAACTGTACAGCCTCCAGTGGGTaGCAACAGACAGTCCTGGCA +
Preference number: 4 (lower is better)
Translates to: MWKQKSRTQKGPKEQGNCTASSG*QQTVLA
Trigger: TGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGT...ACAGTTTCCCTGTTCTTTAGGACCTTTCTGTGTTCTAGATTTTTGTTTCCACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR GCA 90 bp TTAATACCAGCCAGCATCAAAAGCACAAAGAGCGGAACCAGCCTTATCTCCCAGAATACGTTGTACACCTaGAGGTTGGGATCACAACTA +
Preference number: 4 (lower is better)
Translates to: LIPASIKSTKSGTSLISQNTLYT*RLGSQL
Trigger: TAGTTGTGATCCCAACCTGCAGGTGTACAACGTATT...CTGGGAGATAAGGCTGGTTCCGCTCTTTGTGCTTTTGATGCTGGCTGGTATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTATTTACAGCACACACTaGAACCTTTTAAATTTTCCG +
Preference number: 4 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLIYSTH*NLLNFP
Trigger: CGGAAAATTTAAAAGGTTGCAGTGTGTGCTGTAAAT...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115638.10
CDS-3UTR GCA 90 bp AATGGTACTCTGTATTACATAGCACCTTGCCTGTTAGGATGCGGTTCAGTGGAGATTTACAGCACACACTaGAACCTTTTAAATTTTCCG +
Preference number: 4 (lower is better)
Translates to: NGTLYYIAPCLLGCGSVEIYSTH*NLLNFP
Trigger: CGGAAAATTTAAAAGGTTGCAGTGTGTGCTGTAAAT...CTCCACTGAACCGCATCCTAACAGGCAAGGTGCTATGTAATACAGAGTACCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CCA 90 bp ATGTGGAAACAAAAATCTAGAACACAGAAAGGTCCTAAAGAACAGGGAAACTGTTCTGCACCAGGTAATTaGCTAGGTTTGGGTCCAGAT +
Preference number: 4 (lower is better)
Translates to: MWKQKSRTQKGPKEQGNCSAPGN*LGLGPD
Trigger: ATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGA...ACAGTTTCCCTGTTCTTTAGGACCTTTCTGTGTTCTAGATTTTTGTTTCCACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR GCA 90 bp CAGAATGCATGTTCAGTATTCTCTAGTATTTTCTACCTGGTGAAAATAATGTGGATACATTTTAGATTCTaGCGTGGCTCCCAGGTGTTT +
Preference number: 4 (lower is better)
Translates to: QNACSVFSSIFYLVKIMWIHFRF*RGSQVF
Trigger: AAACACCTGGGAGCCACGGCAGAATCTAAAATGTAT...CCACATTATTTTCACCAGGTAGAAAATACTAGAGAATACTGAACATGCATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
3UTR CAA 72 bp TCTACCTTGGTCAATACAATTAAACTAACTTGTTTCTaGCTTGGAATGACCTCTAGGAATAAGATCCCAGAG +
Preference number: 4 (lower is better)
Translates to: STLVNTIKLTCF*LGMTSRNKIPE
Trigger: CTCTGGGATCTTATTCCTAGAGGTCATTCCAAGCAAGAAACAAGTTAGTTTAATTGTATTGACCAAGGTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS CCA 90 bp AACGCTGAAGTGCCCGCCTCTGCTTGGCCTTCTGCACCAGGTAATTaGCTAGGTTTGGGTCCAGATGCCTGGGTGGCTTTGACCGGCGGT +
Preference number: 5 (lower is better)
Translates to: NAEVPASAWPSAPGN*LGLGPDAWVALTGG
Trigger: ACCGCCGGTCAAAGCCACCCAGGCATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCACTTCAGCGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 90 bp GATGCTCCAGGGCAACAGCCTCCAGTGGGTGCCAACAGACAGTCCTaGCACTCACAGCCAACAGCTACCTGGTTGAGGGTGATGCCCTCA +
Preference number: 5 (lower is better)
Translates to: DAPGQQPPVGANRQS*HSQPTATWLRVMPS
Trigger: TGAGGGCATCACCCTCAACCAGGTAGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 90 bp GGCAAACTTGTGCAGGGATGCTCCAGGGCAACAGCCTCCAGTGGGTaGCAACAGACAGTCCTGGCACTCACAGCCAACAGCTACCTGGTT +
Preference number: 5 (lower is better)
Translates to: GKLVQGCSRATASSG*QQTVLALTANSYLV
Trigger: AACCAGGTAGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 90 bp CAGTCGCACCTGGCCTTGGTCATTGTAGGCAAACTTGTGCAGGGATaGTCCAGGGCAACAGCCTCCAGTGGGTGCCAACAGACAGTCCTG +
Preference number: 5 (lower is better)
Translates to: QSHLALVIVGKLVQG*SRATASSGCQQTVL
Trigger: CAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTTGCCTACAATGACCAAGGCCAGGTGCGACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 90 bp GGACTACACGGTTTGGGCAGTCATAGCCACAGCAACAGCGGGAGTTaGACTCGTAGATGGGCTGCCCAGCTTTCAGTCGCACCTGGCCTT +
Preference number: 5 (lower is better)
Translates to: GLHGLGSHSHSNSGS*TRRWAAQLSVAPGL
Trigger: AAGGCCAGGTGCGACTGAAAGCTGGGCAGCCCATCTACGAGTGCAACTCCCGCTGTTGCTGTGGCTATGACTGCCCAAACCGTGTAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 90 bp TGTAGGCAAACTTGTGCAGGGATGCTCCAGGGCAACAGCCTCCAGTaGGTGCCAACAGACAGTCCTGGCACTCACAGCCAACAGCTACCT +
Preference number: 5 (lower is better)
Translates to: CRQTCAGMLQGNSLQ*VPTDSPGTHSQQLP
Trigger: AGGTAGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTTGCCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 90 bp GGCAAGCCGTTGTCCCACATTTGCATTCAATACGGACTCGTTTCTTaGGGGAGCCGGGGAGCCCAGCCAGGCCAAAGTTGGAGTCCATTC +
Preference number: 5 (lower is better)
Translates to: GKPLSHICIQYGLVS*GSRGAQPGQSWSPF
Trigger: GAATGGACTCCAACTTTGGCCTGGCTGGGCTCCCCGGCTCCCCCAAGAAACGAGTCCGTATTGAATGCAAATGTGGGACAACGGCTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 90 bp TGGCCTTCTGCACCAGGTAATTGGCTAGGTTTGGGTCCAGATGCCTaGGTGGCTTTGACCGGCGGTGTCGTCGGACAAGCTCTCTTTCTA +
Preference number: 5 (lower is better)
Translates to: WPSAPGNWLGLGPDA*VALTGGVVGQALFL
Trigger: TAGAAAGAGAGCTTGTCCGACGACACCGCCGGTCAAAGCCACCCAGGCATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGAAGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCCCAGGTGGCTGCGCTaGGCATTGAGCTCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFPRWLR*ALSSCS
Trigger: GGAACAAGAGCTCAATGCCAAGCGCAGCCACCTGGG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CAAGAAGGTCATGGCTGCCTAGCAGGGATGGTGCACGCCTTTAATCCCAGCACTGGTAATTGGCTAGGTTaGGGTCCAGATGCCTGGGTG +
Preference number: 5 (lower is better)
Translates to: QEGHGCLAGMVHAFNPSTGNWLG*GPDAWV
Trigger: CACCCAGGCATCTGGACCCAAACCTAGCCAATTACC...AGTGCTGGGATTAAAGGCGTGCACCATCCCTGCTAGGCAGCCATGACCTTCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTGGCTGCGCTTGGCATaGAGCTCTTGTTCCCAACGC +
Preference number: 5 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFWLRLA*SSCSQR
Trigger: GCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCCA...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCCAACAGCTACCTGGTaGAGGGTGATGCCCTCACCA +
Preference number: 5 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFPTATW*RVMPSP
Trigger: TGGTGAGGGCATCACCCTCAACCAGGTAGCTGTTGG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCCCAGCCAGGCCAAAGTaGGAGTCCATTCGGGTACTC +
Preference number: 5 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVPARPK*ESIRVL
Trigger: GAGTACCCGAATGGACTCCAACTTTGGCCTGGCTGG...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCTGGCTGCGCTTGGCATaGAGCTCTTGTTCCCAACGC +
Preference number: 5 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSWLRLA*SSCSQR
Trigger: GCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCCA...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTCCCAGGTGGCTGCGCTaGGCATTGAGCTCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: AKAGFPASPALYFLMVKLPRWLR*ALSSCS
Trigger: GGAACAAGAGCTCAATGCCAAGCGCAGCCACCTGGG...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCCCGCCCAGATGGTTCTaGTGGCAAAGAATGCGATGC +
Preference number: 5 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFPPRWF*WQRMRC
Trigger: GCATCGCATTCTTTGCCACAAGAACCATCTGGGCGG...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 90 bp GAAGATGCAGAGATCGTAGCGGATGCCTTTCTGGACTACACGGTTTaGGCAGTCATAGCCACAGCAACAGCGGGAGTTGCACTCGTAGAT +
Preference number: 5 (lower is better)
Translates to: EDAEIVADAFLDYTV*AVIATATAGVALVD
Trigger: ATCTACGAGTGCAACTCCCGCTGTTGCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAGAAAGGCATCCGCTACGATCTCTGCATCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTGCAGGACAAGAAAGCTaGGCTAGTCGGCACAGGTCC +
Preference number: 5 (lower is better)
Translates to: AKAGFPASPALYFLMVKLAGQES*ASRHRS
Trigger: GGACCTGTGCCGACTAGCCAAGCTTTCTTGTCCTGC...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp AACCAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACAGGTAATTGGCTAGGTTaGGGTCCAGATGCCTGGGTG +
Preference number: 5 (lower is better)
Translates to: NQIQSMPEGQPGKYGQETGNWLG*GPDAWV
Trigger: CACCCAGGCATCTGGACCCAAACCTAGCCAATTACC...TGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTGGTAATTGGCTAGGTTaGGGTCCAGATGCCTGGGTG +
Preference number: 5 (lower is better)
Translates to: LVAIKCQGWVSSKSSTVLGNWLG*GPDAWV
Trigger: CACCCAGGCATCTGGACCCAAACCTAGCCAATTACC...AAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CTAGTAGTTCTAGTGGCCATCAAATGCCAAGGCTGGGTTTCCAGCAAGTCCAGCTCTGGACTACACGGTTaGGGCAGTCATAGCCACAGC +
Preference number: 5 (lower is better)
Translates to: LVVLVAIKCQGWVSSKSSSGLHG*GSHSHS
Trigger: GCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAGA...GCTGGACTTGCTGGAAACCCAGCCTTGGCATTTGATGGCCACTAGAACTACTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTCCAGCCAGGCCAAAGTaGGAGTCCATTCGGGTACTC +
Preference number: 5 (lower is better)
Translates to: AKAGFPASPALYFLMVKLPARPK*ESIRVL
Trigger: GAGTACCCGAATGGACTCCAACTTTGGCCTGGCTGG...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS TCA 90 bp AGGGCAGGACAAGAAAGCTTGGCTAGTCGGCACAGGTCCTGCAGTTaGTTCCAAGAAGATTTACAGCACACACTGCAACCTAGAGTCGCC +
Preference number: 5 (lower is better)
Translates to: RAGQESLASRHRSCS*FQEDLQHTLQPRVA
Trigger: GGCGACTCTAGGTTGCAGTGTGTGCTGTAAATCTTCTTGGAATCAACTGCAGGACCTGTGCCGACTAGCCAAGCTTTCTTGTCCTGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115637.8
CDS-3UTR CAA 90 bp ATTAACTCAACAACACAGTTTATTGGTGTGCACTCCAGGCTAGGGAGGGCTGAGCCAACAGCTACCTGGTaGAGGGTGATGCCCTCACCA +
Preference number: 5 (lower is better)
Translates to: INSTTQFIGVHSRLGRAEPTATW*RVMPSP
Trigger: TGGTGAGGGCATCACCCTCAACCAGGTAGCTGTTGG...CTCAGCCCTCCCTAGCCTGGAGTGCACACCAATAAACTGTGTTGTTGAGTTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTACAGTCGCACCTGGCCTaGGTCATTGTAGGCAAACTT +
Preference number: 5 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLQSHLA*VIVGKL
Trigger: AAGTTTGCCTACAATGACCAAGGCCAGGTGCGACTG...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CAGATTCAGTCCATGCCTGAAGGTCAGCCTGGGAAGTATGGGCAGGAAACATATTCTGGACTACACGGTTaGGGCAGTCATAGCCACAGC +
Preference number: 5 (lower is better)
Translates to: QIQSMPEGQPGKYGQETYSGLHG*GSHSHS
Trigger: GCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAGA...ATATGTTTCCTGCCCATACTTCCCAGGCTGACCTTCAGGCATGGACTGAATCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GACAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCGCCGTTGTCCCACATTaGCATTCAATACGGACTCGT +
Preference number: 5 (lower is better)
Translates to: DNLYGPGALPSAWHHIAFAVVPH*HSIRTR
Trigger: ACGAGTCCGTATTGAATGCAAATGTGGGACAACGGC...GAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp ACAGGGAAACTGTCAGTGCCATCCAAGACTGGGAATGGTACTCTGTATTACATACCCAGGTGGCTGCGCTaGGCATTGAGCTCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: TGKLSVPSKTGNGTLYYIPRWLR*ALSSCS
Trigger: GGAACAAGAGCTCAATGCCAAGCGCAGCCACCTGGG...TATGTAATACAGAGTACCATTCCCAGTCTTGGATGGCACTGACAGTTTCCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp AGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGGATCCCAACAGCTACCTGGTaGAGGGTGATGCCCTCACCA +
Preference number: 5 (lower is better)
Translates to: RGHMERALKVFGDTIRRIPTATW*RVMPSP
Trigger: TGGTGAGGGCATCACCCTCAACCAGGTAGCTGTTGG...GATCCTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACCAGTCGCACCTGGCCTaGGTCATTGTAGGCAAACTT +
Preference number: 5 (lower is better)
Translates to: SGLHLCGFQGFPETICMDQSHLA*VIVGKL
Trigger: AAGTTTGCCTACAATGACCAAGGCCAGGTGCGACTG...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 90 bp CGGCGGTGTCGTCGGACAAGCTCTCTTTCTAAGTCCTTGTGGAACTaGTTAAGAACTCGTATACATTTTAGATTCTGCCGTGGCTCCCAG +
Preference number: 5 (lower is better)
Translates to: RRCRRTSSLSKSLWN*LRTRIHFRFCRGSQ
Trigger: CTGGGAGCCACGGCAGAATCTAAAATGTATACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGAGCTTGTCCGACGACACCGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp TTTCAGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGGCAGGACAAGAAAGCTaGGCTAGTCGGCACAGGTCC +
Preference number: 5 (lower is better)
Translates to: FQRPHGKSFKSVWGHHQKAGQES*ASRHRS
Trigger: GGACCTGTGCCGACTAGCCAAGCTTTCTTGTCCTGC...CTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACGTCCACGGGGTCCACTaGCATGTTGTAATCAAAGGT +
Preference number: 5 (lower is better)
Translates to: SGLHLCGFQGFPETICMDVHGVH*HVVIKG
Trigger: ACCTTTGATTACAACATGCAAGTGGACCCCGTGGAC...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 90 bp AAGTCCTTGTGGAACTGCTTAAGAACTCGTATACATTTTAGATTCTaGCGTGGCTCCCAGGTGTTTTCTGAGTCGGGATACCCACGCCAC +
Preference number: 5 (lower is better)
Translates to: KSLWNCLRTRIHFRF*RGSQVFSESGYPRH
Trigger: GTGGCGTGGGTATCCCGACTCAGAAAACACCTGGGAGCCACGGCAGAATCTAAAATGTATACGAGTTCTTAAGCAGTTCCACAAGGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CAATCTGTATGGACCAGGTGCTCTACCAAGTGCCTGGCATCACATCGCCTTCTAGCACAGGTCCTGCAGTaGATTCCAAGAAGATTTACA +
Preference number: 5 (lower is better)
Translates to: QSVWTRCSTKCLASHRLLAQVLQ*IPRRFT
Trigger: TGTAAATCTTCTTGGAATCAACTGCAGGACCTGTGC...TAGAAGGCGATGTGATGCCAGGCACTTGGTAGAGCACCTGGTCCATACAGATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp AGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGGATCCAGTCGCACCTGGCCTaGGTCATTGTAGGCAAACTT +
Preference number: 5 (lower is better)
Translates to: RGHMERALKVFGDTIRRIQSHLA*VIVGKL
Trigger: AAGTTTGCCTACAATGACCAAGGCCAGGTGCGACTG...GATCCTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACTTGTACACCTGCAGGTaGGGATCACAACTATGGTTG +
Preference number: 5 (lower is better)
Translates to: SGLHLCGFQGFPETICMDLYTCR*GSQLWL
Trigger: CAACCATAGTTGTGATCCCAACCTGCAGGTGTACAA...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTCCGCCCAGATGGTTCTaGTGGCAAAGAATGCGATGC +
Preference number: 5 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLPPRWF*WQRMRC
Trigger: GCATCGCATTCTTTGCCACAAGAACCATCTGGGCGG...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp TTAATACCAGCCAGCATCAAAAGCACAAAGAGCGGAACCAGCCTTATCTCCCAGGCCGTTGTCCCACATTaGCATTCAATACGGACTCGT +
Preference number: 5 (lower is better)
Translates to: LIPASIKSTKSGTSLISQAVVPH*HSIRTR
Trigger: ACGAGTCCGTATTGAATGCAAATGTGGGACAACGGC...CTGGGAGATAAGGCTGGTTCCGCTCTTTGTGCTTTTGATGCTGGCTGGTATTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 90 bp TTTGACCGGCGGTGTCGTCGGACAAGCTCTCTTTCTAAGTCCTTGTaGAACTGCTTAAGAACTCGTATACATTTTAGATTCTGCCGTGGC +
Preference number: 5 (lower is better)
Translates to: FDRRCRRTSSLSKSL*NCLRTRIHFRFCRG
Trigger: GCCACGGCAGAATCTAAAATGTATACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGAGCTTGTCCGACGACACCGCCGGTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTGCACAGGTCCTGCAGTaGATTCCAAGAAGATTTACA +
Preference number: 5 (lower is better)
Translates to: AKAGFPASPALYFLMVKLAQVLQ*IPRRFT
Trigger: TGTAAATCTTCTTGGAATCAACTGCAGGACCTGTGC...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CATCTGGTAGCAGGGTACAGAGTTTCACATAGGGCACTCTGGGCACAGGAAGTCTCTCTTTCTAAGTCCTaGTGGAACTGCTTAAGAACT +
Preference number: 5 (lower is better)
Translates to: HLVAGYRVSHRALWAQEVSLSKS*WNCLRT
Trigger: AGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGA...GACTTCCTGTGCCCAGAGTGCCCTATGTGAAACTCTGTACCCTGCTACCAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp TCTAGTTTTGTAAGAGTGAAAGCCTCTCCTAGTCATCAGTCACTGATATGGATGTGGCTGCGCTTGGCATaGAGCTCTTGTTCCCAACGC +
Preference number: 5 (lower is better)
Translates to: SSFVRVKASPSHQSLIWMWLRLA*SSCSQR
Trigger: GCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCCA...CATCCATATCAGTGACTGATGACTAGGAGAGGCTTTCACTCTTACAAAACTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp TTAATACCAGCCAGCATCAAAAGCACAAAGAGCGGAACCAGCCTTATCTCCCAGTTGTACACCTGCAGGTaGGGATCACAACTATGGTTG +
Preference number: 5 (lower is better)
Translates to: LIPASIKSTKSGTSLISQLYTCR*GSQLWL
Trigger: CAACCATAGTTGTGATCCCAACCTGCAGGTGTACAA...CTGGGAGATAAGGCTGGTTCCGCTCTTTGTGCTTTTGATGCTGGCTGGTATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp TCTGGGCTCCACCTTTGTGGTTTTCAAGGCTTCCCTGAGACAATCTGTATGGACTTGTCTATGAATACGTaGTACACCTGCAGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: SGLHLCGFQGFPETICMDLSMNT*YTCRLG
Trigger: TCCCAACCTGCAGGTGTACAACGTATTCATAGACAA...GTCCATACAGATTGTCTCAGGGAAGCCTTGAAAACCACAAAGGTGGAGCCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp TCTAGTTTTGTAAGAGTGAAAGCCTCTCCTAGTCATCAGTCACTGATATGGATGTCTGGACTACACGGTTaGGGCAGTCATAGCCACAGC +
Preference number: 5 (lower is better)
Translates to: SSFVRVKASPSHQSLIWMSGLHG*GSHSHS
Trigger: GCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAGA...CATCCATATCAGTGACTGATGACTAGGAGAGGCTTTCACTCTTACAAAACTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp ATTAACTCAACAACACAGTTTATTGGTGTGCACTCCAGGCTAGGGAGGGCTGAGTTGTCTATGAATACGTaGTACACCTGCAGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: INSTTQFIGVHSRLGRAELSMNT*YTCRLG
Trigger: TCCCAACCTGCAGGTGTACAACGTATTCATAGACAA...CTCAGCCCTCCCTAGCCTGGAGTGCACACCAATAAACTGTGTTGTTGAGTTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp GCCAAGGCTGGGTTTCCAGCAAGTCCAGCACTGTACTTCCTGATGGTAAAACTTAGTCGCTCATCAAGGTaGTCTATGAATACGTTGTAC +
Preference number: 5 (lower is better)
Translates to: AKAGFPASPALYFLMVKLSRSSR*SMNTLY
Trigger: GTACAACGTATTCATAGACAACCTTGATGAGCGACT...AAGTTTTACCATCAGGAAGTACAGTGCTGGACTTGCTGGAAACCCAGCCTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTGTCCACGGGGTCCACTaGCATGTTGTAATCAAAGGT +
Preference number: 5 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLVHGVH*HVVIKG
Trigger: ACCTTTGATTACAACATGCAAGTGGACCCCGTGGAC...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS-3UTR CAA 90 bp TTTCAGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGGCACAGGTCCTGCAGTaGATTCCAAGAAGATTTACA +
Preference number: 5 (lower is better)
Translates to: FQRPHGKSFKSVWGHHQKAQVLQ*IPRRFT
Trigger: TGTAAATCTTCTTGGAATCAACTGCAGGACCTGTGC...CTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp TTTCAGAGGCCACATGGAAAGAGCTTTAAAAGTGTTTGGGGACACCATCAGAAGTCTCTTTCTAAGTCCTaGTGGAACTGCTTAAGAACT +
Preference number: 5 (lower is better)
Translates to: FQRPHGKSFKSVWGHHQKSLSKS*WNCLRT
Trigger: AGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGA...CTTCTGATGGTGTCCCCAAACACTTTTAAAGCTCTTTCCATGTGGCCTCTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115636.4
CDS-3UTR CAA 90 bp CCAGCACTGTACTTCCTGATGGTAAAACTTAGTTCTAACCTTTCTGTGGGGCTTTCTCTTTCTAAGTCCTaGTGGAACTGCTTAAGAACT +
Preference number: 5 (lower is better)
Translates to: PALYFLMVKLSSNLSVGLSLSKS*WNCLRT
Trigger: AGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGA...AAGCCCCACAGAAAGGTTAGAACTAAGTTTTACCATCAGGAAGTACAGTGCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp GATCCGCCCCAGGTGGCTGCGCTTGGCATTGAGCTCTaGTTCCCAACGCTGAAGTGCCCGCCTCTGCTTGGC +
Preference number: 6 (lower is better)
Translates to: DPPQVAALGIEL*FPTLKCPPLLG
Trigger: GCCAAGCAGAGGCGGGCACTTCAGCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCCACCTGGGGCGGATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp CTCCACGGTGATCCGCCCCAGGTGGCTGCGCTTGGCATTGAGCTCTaGTTCCCAACGCTGAAGTGCCCGCCTCTGCTTGGCCTTCTGCAC +
Preference number: 6 (lower is better)
Translates to: LHGDPPQVAALGIEL*FPTLKCPPLLGLLH
Trigger: GTGCAGAAGGCCAAGCAGAGGCGGGCACTTCAGCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCCACCTGGGGCGGATCACCGTGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp GTGCCCGCCTCTGCTTGGCCTTCTGCACCAGGTAATTGGCTAGGTTaGGGTCCAGATGCCTGGGTGGCTTTGACCGGCGGTGTCGTCGGA +
Preference number: 6 (lower is better)
Translates to: VPASAWPSAPGNWLG*GPDAWVALTGGVVG
Trigger: TCCGACGACACCGCCGGTCAAAGCCACCCAGGCATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp GTGCAGGGATGCTCCAGGGCAACAGCCTCCAGTGGGTaGCAACAGACAGTCCTGGCACTCACAGCCAACAGC +
Preference number: 6 (lower is better)
Translates to: VQGCSRATASSG*QQTVLALTANS
Trigger: GCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATCCCTGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS TCA 72 bp TGGCTGCGCTTGGCATTGAGCTCTTGTTCCCAACGCTaGAGTGCCCGCCTCTGCTTGGCCTTCTGCACCAGG +
Preference number: 6 (lower is better)
Translates to: WLRLALSSCSQR*SARLCLAFCTR
Trigger: CCTGGTGCAGAAGGCCAAGCAGAGGCGGGCACTTCAGCGTTGGGAACAAGAGCTCAATGCCAAGCGCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp GGGCAACAGCCTCCAGTGGGTGCCAACAGACAGTCCTaGCACTCACAGCCAACAGCTACCTGGTTGAGGGTG +
Preference number: 6 (lower is better)
Translates to: GQQPPVGANRQS*HSQPTATWLRV
Trigger: CACCCTCAACCAGGTAGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp ATACGTCTTCCACGTAGTCCAGGTCAAAGAGGTAGGTaGCGCCCTGGCGGTCGTAGATCTGGCCCCTCCGCT +
Preference number: 6 (lower is better)
Translates to: IRLPRSPGQRGR*RPGGRRSGPSA
Trigger: AGCGGAGGGGCCAGATCTACGACCGCCAGGGCGCCACCTACCTCTTTGACCTGGACTACGTGGAAGACGTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp GTGCCCGCCTCTGCTTGGCCTTCTGCACCAGGTAATTaGCTAGGTTTGGGTCCAGATGCCTGGGTGGCTTTG +
Preference number: 6 (lower is better)
Translates to: VPASAWPSAPGN*LGLGPDAWVAL
Trigger: CAAAGCCACCCAGGCATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp ACTTGTGCAGGGATGCTCCAGGGCAACAGCCTCCAGTaGGTGCCAACAGACAGTCCTGGCACTCACAGCCAA +
Preference number: 6 (lower is better)
Translates to: TCAGMLQGNSLQ*VPTDSPGTHSQ
Trigger: TTGGCTGTGAGTGCCAGGACTGTCTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp CGGCAAGCCGTTGTCCCACATTTGCATTCAATACGGACTCGTTTCTaGGGGGAGCCGGGGAGCCCAGCCAGGCCAAAGTTGGAGTCCATT +
Preference number: 6 (lower is better)
Translates to: RQAVVPHLHSIRTRF*GEPGSPARPKLESI
Trigger: AATGGACTCCAACTTTGGCCTGGCTGGGCTCCCCGGCTCCCCCAAGAAACGAGTCCGTATTGAATGCAAATGTGGGACAACGGCTTGCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp CTGGCCTTGGTCATTGTAGGCAAACTTGTGCAGGGATaGTCCAGGGCAACAGCCTCCAGTGGGTGCCAACAG +
Preference number: 6 (lower is better)
Translates to: LALVIVGKLVQG*SRATASSGCQQ
Trigger: CTGTTGGCACCCACTGGAGGCTGTTGCCCTGGAGCATCCCTGCACAAGTTTGCCTACAATGACCAAGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp GGTTTGGGCAGTCATAGCCACAGCAACAGCGGGAGTTaGACTCGTAGATGGGCTGCCCAGCTTTCAGTCGCA +
Preference number: 6 (lower is better)
Translates to: GLGSHSHSNSGS*TRRWAAQLSVA
Trigger: TGCGACTGAAAGCTGGGCAGCCCATCTACGAGTGCAACTCCCGCTGTTGCTGTGGCTATGACTGCCCAAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp TCTGCTTGGCCTTCTGCACCAGGTAATTGGCTAGGTTaGGGTCCAGATGCCTGGGTGGCTTTGACCGGCGGT +
Preference number: 6 (lower is better)
Translates to: SAWPSAPGNWLG*GPDAWVALTGG
Trigger: ACCGCCGGTCAAAGCCACCCAGGCATCTGGACCCAAACCTAGCCAATTACCTGGTGCAGAAGGCCAAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp GTTGCACTCGTAGATGGGCTGCCCAGCTTTCAGTCGCACCTGGCCTaGGTCATTGTAGGCAAACTTGTGCAGGGATGCTCCAGGGCAACA +
Preference number: 6 (lower is better)
Translates to: VALVDGLPSFQSHLA*VIVGKLVQGCSRAT
Trigger: TGTTGCCCTGGAGCATCCCTGCACAAGTTTGCCTACAATGACCAAGGCCAGGTGCGACTGAAAGCTGGGCAGCCCATCTACGAGTGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp GCGCTTGGCATTGAGCTCTTGTTCCCAACGCTGAAGTaGCCGCCTCTGCTTGGCCTTCTGCACCAGGTAATT +
Preference number: 6 (lower is better)
Translates to: ALGIELLFPTLK*PPLLGLLHQVI
Trigger: AATTACCTGGTGCAGAAGGCCAAGCAGAGGCGGGCACTTCAGCGTTGGGAACAAGAGCTCAATGCCAAGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp TTGTCCCACATTTGCATTCAATACGGACTCGTTTCTTaGGGGAGCCGGGGAGCCCAGCCAGGCCAAAGTTGG +
Preference number: 6 (lower is better)
Translates to: LSHICIQYGLVS*GSRGAQPGQSW
Trigger: CCAACTTTGGCCTGGCTGGGCTCCCCGGCTCCCCCAAGAAACGAGTCCGTATTGAATGCAAATGTGGGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp GTAGATGGGCTGCCCAGCTTTCAGTCGCACCTGGCCTaGGTCATTGTAGGCAAACTTGTGCAGGGATGCTCC +
Preference number: 6 (lower is better)
Translates to: VDGLPSFQSHLA*VIVGKLVQGCS
Trigger: GGAGCATCCCTGCACAAGTTTGCCTACAATGACCAAGGCCAGGTGCGACTGAAAGCTGGGCAGCCCATCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp GTTGTCCCACATTTGCATTCAATACGGACTCGTTTCTaGGGGGAGCCGGGGAGCCCAGCCAGGCCAAAGTTG +
Preference number: 6 (lower is better)
Translates to: VVPHLHSIRTRF*GEPGSPARPKL
Trigger: CAACTTTGGCCTGGCTGGGCTCCCCGGCTCCCCCAAGAAACGAGTCCGTATTGAATGCAAATGTGGGACAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp GCACCAGGTAATTGGCTAGGTTTGGGTCCAGATGCCTGGGTGGCTTaGACCGGCGGTGTCGTCGGACAAGCTCTCTTTCTAAGTCCTTGT +
Preference number: 6 (lower is better)
Translates to: APGNWLGLGPDAWVA*TGGVVGQALFLSPC
Trigger: ACAAGGACTTAGAAAGAGAGCTTGTCCGACGACACCGCCGGTCAAAGCCACCCAGGCATCTGGACCCAAACCTAGCCAATTACCTGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS TCA 72 bp TGTCCACGGGGTCCACTTGCATGTTGTAATCAAAGGTaGGCTCCTCGCCCGCCCAGATGGTTCTTGTGGCAA +
Preference number: 6 (lower is better)
Translates to: CPRGPLACCNQR*APRPPRWFLWQ
Trigger: TTGCCACAAGAACCATCTGGGCGGGCGAGGAGCTCACCTTTGATTACAACATGCAAGTGGACCCCGTGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp AGAGATCGTAGCGGATGCCTTTCTGGACTACACGGTTaGGGCAGTCATAGCCACAGCAACAGCGGGAGTTGC +
Preference number: 6 (lower is better)
Translates to: RDRSGCLSGLHG*GSHSHSNSGSC
Trigger: GCAACTCCCGCTGTTGCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAGAAAGGCATCCGCTACGATCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp GGAAGATGCAGAGATCGTAGCGGATGCCTTTCTGGACTACACGGTTaGGGCAGTCATAGCCACAGCAACAGCGGGAGTTGCACTCGTAGA +
Preference number: 6 (lower is better)
Translates to: GRCRDRSGCLSGLHG*GSHSHSNSGSCTRR
Trigger: TCTACGAGTGCAACTCCCGCTGTTGCTGTGGCTATGACTGCCCAAACCGTGTAGTCCAGAAAGGCATCCGCTACGATCTCTGCATCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp AACAGACAGTCCTGGCACTCACAGCCAACAGCTACCTaGTTGAGGGTGATGCCCTCACCAACTCGATACTCA +
Preference number: 6 (lower is better)
Translates to: NRQSWHSQPTAT*LRVMPSPTRYS
Trigger: TGAGTATCGAGTTGGTGAGGGCATCACCCTCAACCAGGTAGCTGTTGGCTGTGAGTGCCAGGACTGTCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp AGACAGTCCTGGCACTCACAGCCAACAGCTACCTGGTaGAGGGTGATGCCCTCACCAACTCGATACTCATTG +
Preference number: 6 (lower is better)
Translates to: RQSWHSQPTATW*RVMPSPTRYSL
Trigger: CAATGAGTATCGAGTTGGTGAGGGCATCACCCTCAACCAGGTAGCTGTTGGCTGTGAGTGCCAGGACTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp AGAAGAGGTATTTTCGGCAAGCCGTTGTCCCACATTTaGATTCAATACGGACTCGTTTCTTGGGGGAGCCGG +
Preference number: 6 (lower is better)
Translates to: RRGIFGKPLSHI*IQYGLVSWGSR
Trigger: CCGGCTCCCCCAAGAAACGAGTCCGTATTGAATGCAAATGTGGGACAACGGCTTGCCGAAAATACCTCTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS TCA 72 bp ATGCGATGCGGGGTAGTCGCTCATCAAGGTTGTCTATaGATACGTTGTACACCTGCAGGTTGGGATCACAAC +
Preference number: 6 (lower is better)
Translates to: MRCGVVAHQGCL*IRCTPAGWDHN
Trigger: GTTGTGATCCCAACCTGCAGGTGTACAACGTATTCATAGACAACCTTGATGAGCGACTACCCCGCATCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp GCAAAGAATGCGATGCGGGGTAGTCGCTCATCAAGGTaGTCTATGAATACGTTGTACACCTGCAGGTTGGGA +
Preference number: 6 (lower is better)
Translates to: AKNAMRGSRSSR*SMNTLYTCRLG
Trigger: TCCCAACCTGCAGGTGTACAACGTATTCATAGACAACCTTGATGAGCGACTACCCCGCATCGCATTCTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS TCA 72 bp CAAGAAAGCTTGGCTAGTCGGCACAGGTCCTGCAGTTaGTTCCAAGAAGATTTACAGCACACACTGCAACCT +
Preference number: 6 (lower is better)
Translates to: QESLASRHRSCS*FQEDLQHTLQP
Trigger: AGGTTGCAGTGTGTGCTGTAAATCTTCTTGGAATCAACTGCAGGACCTGTGCCGACTAGCCAAGCTTTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CCA 72 bp ACCAACTCGATACTCATTGATATAGACAAAGGACCTTaGAGGGCCATCCAGGTCTACCTCATTCTCCACGGT +
Preference number: 6 (lower is better)
Translates to: TNSILIDIDKGP*RAIQVYLILHG
Trigger: ACCGTGGAGAATGAGGTAGACCTGGATGGCCCTCCAAGGTCCTTTGTCTATATCAATGAGTATCGAGTTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp CGGGGTAGTCGCTCATCAAGGTTGTCTATGAATACGTaGTACACCTGCAGGTTGGGATCACAACTATGGTTG +
Preference number: 6 (lower is better)
Translates to: RGSRSSRLSMNT*YTCRLGSQLWL
Trigger: CAACCATAGTTGTGATCCCAACCTGCAGGTGTACAACGTATTCATAGACAACCTTGATGAGCGACTACCCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp GGCTTTGACCGGCGGTGTCGTCGGACAAGCTCTCTTTCTAAGTCCTaGTGGAACTGCTTAAGAACTCGTATACATTTTAGATTCTGCCGT +
Preference number: 6 (lower is better)
Translates to: GFDRRCRRTSSLSKS*WNCLRTRIHFRFCR
Trigger: ACGGCAGAATCTAAAATGTATACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGAGCTTGTCCGACGACACCGCCGGTCAAAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 90 bp GTTCTTGTGGCAAAGAATGCGATGCGGGGTAGTCGCTCATCAAGGTaGTCTATGAATACGTTGTACACCTGCAGGTTGGGATCACAACTA +
Preference number: 6 (lower is better)
Translates to: VLVAKNAMRGSRSSR*SMNTLYTCRLGSQL
Trigger: TAGTTGTGATCCCAACCTGCAGGTGTACAACGTATTCATAGACAACCTTGATGAGCGACTACCCCGCATCGCATTCTTTGCCACAAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp TGGAACTGCTTAAGAACTCGTATACATTTTAGATTCTaGCGTGGCTCCCAGGTGTTTTCTGAGTCGGGATAC +
Preference number: 6 (lower is better)
Translates to: WNCLRTRIHFRF*RGSQVFSESGY
Trigger: GTATCCCGACTCAGAAAACACCTGGGAGCCACGGCAGAATCTAAAATGTATACGAGTTCTTAAGCAGTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS CAA 72 bp CGGCGGTGTCGTCGGACAAGCTCTCTTTCTAAGTCCTaGTGGAACTGCTTAAGAACTCGTATACATTTTAGA +
Preference number: 6 (lower is better)
Translates to: RRCRRTSSLSKS*WNCLRTRIHFR
Trigger: TCTAAAATGTATACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGAGCTTGTCCGACGACACCGCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10
CDS GCA 72 bp CGTCGGACAAGCTCTCTTTCTAAGTCCTTGTGGAACTaGTTAAGAACTCGTATACATTTTAGATTCTGCCGT +
Preference number: 6 (lower is better)
Translates to: RRTSSLSKSLWN*LRTRIHFRFCR
Trigger: ACGGCAGAATCTAAAATGTATACGAGTTCTTAAGCAGTTCCACAAGGACTTAGAAAGAGAGCTTGTCCGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115636.4
ENSMUST00000115637.8
ENSMUST00000115638.10