Pregenerated sensors for SURF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014873Ensembl transcript IDs: ENSMUST00000015017.8
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACACTGCAGAGAAAGCCATGCAAGTCCCCGACGCTGCCATCTTCTaGACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGG | + |
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Preference number: 1 (lower is better) Translates to: NTAEKAMQVPDAAIF*TEPPGPLWTTANVR Trigger: CCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| 3UTR GCA 90 bp | AGAGTCACTCAACACTGCAGAGAAAGCCATGCAAGTCCCCGACGCTaGCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGC | + |
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Preference number: 1 (lower is better) Translates to: RVTQHCRESHASPRR*HLLNRTSRPTLDNS Trigger: GCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTTGAGTGACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| 3UTR-3UTR GCA 90 bp | GTGGTCCTATATGGTGAGCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGATGCTGCAGAGAAAGCCATaGAAGTCCCCGACGCTGCCA | + |
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Preference number: 2 (lower is better) Translates to: VVLYGEQPELGAWLGFGMLQRKP*KSPTLP Trigger: TGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAG...CATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGCTCACCATATAGGACCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGTCCTATATGGTGAGCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGATGATGTCAGGATATCAGTaGCCATTTCCAAGGACATCC | + |
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Preference number: 2 (lower is better) Translates to: VVLYGEQPELGAWLGFGMMSGYQ*PFPRTS Trigger: GGATGTCCTTGGAAATGGCCACTGATATCCTGACAT...CATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGCTCACCATATAGGACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| 3UTR TCA 72 bp | GAGAAAGCCATGCAAGTCCCCGACGCTGCCATCTTCTaGACAGAACCTCCAGGCCCACTCTGGACAACAGCC | + |
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Preference number: 3 (lower is better) Translates to: EKAMQVPDAAIF*TEPPGPLWTTA Trigger: GGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| 3UTR GCA 72 bp | TACAGCAAGAGTCACTCAACACTGCAGAGAAAGCCATaGAAGTCCCCGACGCTGCCATCTTCTGAACAGAAC | + |
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Preference number: 3 (lower is better) Translates to: YSKSHSTLQRKP*KSPTLPSSEQN Trigger: GTTCTGTTCAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTTGAGTGACTCTTGCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR GCA 90 bp | AGTGTGGTCCTATATGGTGAGCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGAGTCTCAAGCTGGGGTaGTGGCGCAAGAATGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: SVVLYGEQPELGAWLGFGSLKLG*WRKNAS Trigger: GCTTGCATTCTTGCGCCAGCACCCCAGCTTGAGACT...CCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGCTCACCATATAGGACCACACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR GCA 90 bp | AGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGATATCAGTGGCCATCTCCGGCCCTGGGTGTaGCTCAGCACGTGTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: RTSRPTLDNSQCQDISGHLRPWV*LSTCSG Trigger: CCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAG...ATGGCCACTGATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | CTGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCACCGCGGGTGTATTCCTaGAGCTCGGGCAGACGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LPSSEQNLQAHSGQQPMSPRVYS*SSGRRQ Trigger: CTGCCGTCTGCCCGAGCTCCAGGAATACACCCGCGG...TGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | GCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGATGCTACAGTGAGCTACAGCCAGAAACCTGTTCTCTaGCCTGGGAGTTCATCACTG | + |
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Preference number: 4 (lower is better) Translates to: AARAGSLARLRDATVSYSQKPVL*PGSSSL Trigger: CAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTG...GCTGTAGCTCACTGTAGCATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | GCAAGTCCCCGACGCTGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACACCTGTTCTCTGGCCTaGGAGTTCATCACTGTTCGT | + |
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Preference number: 4 (lower is better) Translates to: ASPRRCHLLNRTSRPTLDTCSLA*EFITVR Trigger: ACGAACAGTGATGAACTCCCAGGCCAGAGAACAGGT...GTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCGTCGGGGACTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | GTCACTCAACACTGCAGAGAAAGCCATGCAAGTCCCCGACGCTGCCATCTTCTGGAACCTTGCGGGTGTTaGGCAGTAGTCTCAAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VTQHCRESHASPRRCHLLEPCGC*AVVSSW Trigger: CCAGCTTGAGACTACTGCCCAACACCCGCAAGGTTC...CAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTTGAGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | CCACTCTGGACAACAGCCAATGTCAGGATATCAGTGGCCATTTCCAAGGACATCCGGCAGGGCAGCTCATaGCCAGTTAGGGAGCAGCGA | + |
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Preference number: 4 (lower is better) Translates to: PLWTTANVRISVAISKDIRQGSS*PVREQR Trigger: TCGCTGCTCCCTAACTGGCCATGAGCTGCCCTGCCG...GATGTCCTTGGAAATGGCCACTGATATCCTGACATTGGCTGTTGTCCAGAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | GTGGTCCTATATGGTGAGCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGATGTCATCACTGTTCGTCTaGTCCTCTCTCTTCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: VVLYGEQPELGAWLGFGMSSLFV*SSLFFL Trigger: GAGGAAGAAGAGAGAGGACCAGACGAACAGTGATGA...CATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGCTCACCATATAGGACCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | GCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGATGCTACAGTGAGCTACAGCGGCTTCTCATCCTGTTaGTCTGTCAGAAAGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: AARAGSLARLRDATVSYSGFSSC*SVRKSS Trigger: TGAAGACTTTCTGACAGACCAACAGGATGAGAAGCC...GCTGTAGCTCACTGTAGCATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | ACTCAACACTGCAGAGAAAGCCATGCAAGTCCCCGACGCTGCCATCTTCTGAACTTACGACCCCTCTTGTaGCCCACTCTGGCCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: TQHCRESHASPRRCHLLNLRPLL*PTLASS Trigger: GGAAGAGGCCAGAGTGGGCCACAAGAGGGGTCGTAA...GTTCAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTTGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | CTGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGAACTTGACAGCCGTTaGTACTTCTTGCCGCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: LPSSEQNLQAHSGQQPMSELDSR*YFLPRV Trigger: CACCCGCGGCAAGAAGTACCAACGGCTGTCAAGTTC...TGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR GCA 90 bp | CTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGATATCAGTGTGCTGGCGCAAGAATaGAAGCACATCAGAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LNRTSRPTLDNSQCQDISVLAQE*KHIRGW Trigger: CCACCCTCTGATGTGCTTGCATTCTTGCGCCAGCAC...ACTGATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR GCA 90 bp | CTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGATATCGGGGACTTATTGATGTaGCTCAGGGTGAGTTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LLNRTSRPTLDNSQCQDIGDLLM*LRVSLQ Trigger: CTGCAAACTCACCCTGAGGCACATCAATAAGTCCCC...GATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR TCA 90 bp | TGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGTTAGAGAAGGAACTTaGCAGCCGTTGGTACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: CHLLNRTSRPTLDNSQCQVREGT*QPLVLL Trigger: AAGAAGTACCAACGGCTGTCAAGTTCCTTCTCTAAC...CTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR TCA 90 bp | CTGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCATGTGATGATAGCTCTTaGACTTCTTGGTCAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LPSSEQNLQAHSGQQPMSCDDSS*TSWSRR Trigger: CCTCCTTGACCAAGAAGTTCAAGAGCTATCATCACA...TGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CCA 90 bp | CCACTCTGGACAACAGCCAATGTCAGGATATCAGTGGCCATTTCCAAGGACATCCCTCAGCACGTGTTCTaGGGACTTATTGATGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: PLWTTANVRISVAISKDIPQHVF*GLIDVP Trigger: AGGCACATCAATAAGTCCCCAGAACACGTGCTGAGG...GATGTCCTTGGAAATGGCCACTGATATCCTGACATTGGCTGTTGTCCAGAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR TCA 90 bp | CTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGATATCCTAGTTCTCTCTTTGTaGACAGCTCAGGTGGGTATA | + |
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Preference number: 4 (lower is better) Translates to: LLNRTSRPTLDNSQCQDILVLSL*TAQVGI Trigger: TATACCCACCTGAGCTGTTCACAAAGAGAGAACTAG...GATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR GCA 90 bp | CTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGATATCAGTTTCATATTGATGAAGTaGTCTCTGATACCTCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: LNRTSRPTLDNSQCQDISFILMK*SLIPPA Trigger: GGCCGGAGGTATCAGAGAGCACTTCATCAATATGAA...ACTGATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | CCGCGGGTGTATTCCTGGAGCTCGGGCAGACGGCAGGGCAGCTCATaGCCAGTTAGGGAGCAGCGAACCTTGCGGGTGTTGGGCAGTAGT | + |
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Preference number: 5 (lower is better) Translates to: PRVYSWSSGRRQGSS*PVREQRTLRVLGSS Trigger: ACTACTGCCCAACACCCGCAAGGTTCGCTGCTCCCTAACTGGCCATGAGCTGCCCTGCCGTCTGCCCGAGCTCCAGGAATACACCCGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | AAGGAACTTGACAGCCGTTGGTACTTCTTGCCGCGGGTGTATTCCTaGAGCTCGGGCAGACGGCAGGGCAGCTCATGGCCAGTTAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: KELDSRWYFLPRVYS*SSGRRQGSSWPVRE Trigger: CTCCCTAACTGGCCATGAGCTGCCCTGCCGTCTGCCCGAGCTCCAGGAATACACCCGCGGCAAGAAGTACCAACGGCTGTCAAGTTCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | TTAGGGAGCAGCGAACCTTGCGGGTGTTGGGCAGTAGTCTCAAGCTaGGGTGCTGGCGCAAGAATGCAAGCACATCAGAGGGTGGTTCGT | + |
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Preference number: 5 (lower is better) Translates to: LGSSEPCGCWAVVSS*GAGARMQAHQRVVR Trigger: ACGAACCACCCTCTGATGTGCTTGCATTCTTGCGCCAGCACCCCAGCTTGAGACTACTGCCCAACACCCGCAAGGTTCGCTGCTCCCTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CAA 90 bp | CCCCGACGCTGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCGTTGGTGCCGATTCTTaGTGCTGGGCACAATGTGTG | + |
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Preference number: 5 (lower is better) Translates to: PRRCHLLNRTSRPTLDNSVGADS*CWAQCV Trigger: CACACATTGTGCCCAGCACAAAGAATCGGCACCAAC...GCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCGTCGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CAA 90 bp | CAGCAAGAGTCACTCAACACTGCAGAGAAAGCCATGCAAGTCCCCGACGCTGCCTGCCTCAGGGTGAGTTaGCAGAACAGTTGGTGCCGA | + |
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Preference number: 5 (lower is better) Translates to: QQESLNTAEKAMQVPDAACLRVS*QNSWCR Trigger: TCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCA...GGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTTGAGTGACTCTTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CAA 90 bp | CTATATGGTGAGCAGCCAGAGCTGGGAGCCTGGCTAGGCTTCGGGATGCTACAGTCTCTCTTCTTCCTCTaGTGTAGAAGGCAGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LYGEQPELGAWLGFGMLQSLFFL*CRRQAG Trigger: CCCTGCCTGCCTTCTACACAAGAGGAAGAAGAGAGA...CTGTAGCATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGCTCACCATATAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS GCA 90 bp | CGGCCCTGGGTGTGCCTCAGCACGTGTTCTGGGGACTTATTGATGTaGCTCAGGGTGAGTTTGCAGAACAGTTGGTGCCGATTCTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: RPWVCLSTCSGDLLM*LRVSLQNSWCRFFV Trigger: CACAAAGAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | TGCTCTCTGATACCTCCGGCCCTGGGTGTGCCTCAGCACGTGTTCTaGGGACTTATTGATGTGCCTCAGGGTGAGTTTGCAGAACAGTTG | + |
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Preference number: 5 (lower is better) Translates to: CSLIPPALGVPQHVF*GLIDVPQGEFAEQL Trigger: CAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | TGTCATGCTGTCGTCACTCAAGGCGTCTTCCTCGTCACTGGAAGCTaGCTCCCAGAAACCTGTTCTCTGGCCTGGGAGTTCATCACTGTT | + |
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Preference number: 5 (lower is better) Translates to: CHAVVTQGVFLVTGS*LPETCSLAWEFITV Trigger: AACAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGAGTGACGACAGCATGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | ATAGGTCTGTCATGCTGTCGTCACTCAAGGCGTCTTCCTCGTCACTaGAAGCTGGCTCCCAGAAACCTGTTCTCTGGCCTGGGAGTTCAT | + |
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Preference number: 5 (lower is better) Translates to: IGLSCCRHSRRLPRH*KLAPRNLFSGLGVH Trigger: ATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGAGTGACGACAGCATGACAGACCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CAA 90 bp | CTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCAGGATATCAGTAGCCGTTGGTACTTCTaGCCGCGGGTGTATTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LNRTSRPTLDNSQCQDISSRWYF*PRVYSW Trigger: CCAGGAATACACCCGCGGCAAGAAGTACCAACGGCT...ACTGATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS-3UTR CAA 90 bp | CGCTGCCATCTTCTGAACAGAACCTCCAGGCCCACTCTGGACAACAGCCAATGTCGGCTTCTCATCCTGTaGGTCTGTCAGAAAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: RCHLLNRTSRPTLDNSQCRLLIL*VCQKVF Trigger: GAAGACTTTCTGACAGACCAACAGGATGAGAAGCCG...ACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS TCA 90 bp | AATGTGTGGCTCGAAAGCTGCGTAATCGAAGTTAGAGAAGGAACTTaGCAGCCGTTGGTACTTCTTGCCGCGGGTGTATTCCTGGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: NVWLESCVIEVREGT*QPLVLLAAGVFLEL Trigger: GAGCTCCAGGAATACACCCGCGGCAAGAAGTACCAACGGCTGTCAAGTTCCTTCTCTAACTTCGATTACGCAGCTTTCGAGCCACACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS GCA 90 bp | CCCACTCTGGCCTCTTCCCTCTCTCTAAAGCTCTTCTCTTCTGAATaGTCCGGCTTCTCATCCTGTTGGTCTGTCAGAAAGTCTTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: PTLASSLSLKLFSSE*SGFSSCWSVRKSSG Trigger: TCCTGAAGACTTTCTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAGCTTTAGAGAGAGGGAAGAGGCCAGAGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS GCA 90 bp | GACATATTCCACACCTTGTTTCTGACACTCTTCATATTGATGAAGTaGTCTCTGATACCTCCGGCCCTGGGTGTGCCTCAGCACGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: DIFHTLFLTLFILMK*SLIPPALGVPQHVF Trigger: GAACACGTGCTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAATATGAAGAGTGTCAGAAACAAGGTGTGGAATATGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 90 bp | TCTCTAAAGCTCTTCTCTTCTGAATGCTCCGGCTTCTCATCCTGTTaGTCTGTCAGAAAGTCTTCAGGAGTGTCATCGTTCTTAGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: SLKLFSSECSGFSSC*SVRKSSGVSSFLGL Trigger: CAAGCCTAAGAACGATGACACTCCTGAAGACTTTCTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAGCTTTAGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 90 bp | GGCAGACGGCAGGGCAGCTCATGGCCAGTTAGGGAGCAGCGAACCTaGCGGGTGTTGGGCAGTAGTCTCAAGCTGGGGTGCTGGCGCAAG | + |
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Preference number: 6 (lower is better) Translates to: GRRQGSSWPVREQRT*RVLGSSLKLGCWRK Trigger: CTTGCGCCAGCACCCCAGCTTGAGACTACTGCCCAACACCCGCAAGGTTCGCTGCTCCCTAACTGGCCATGAGCTGCCCTGCCGTCTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | GACAGCCGTTGGTACTTCTTGCCGCGGGTGTATTCCTaGAGCTCGGGCAGACGGCAGGGCAGCTCATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: DSRWYFLPRVYS*SSGRRQGSSWP Trigger: TGGCCATGAGCTGCCCTGCCGTCTGCCCGAGCTCCAGGAATACACCCGCGGCAAGAAGTACCAACGGCTGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | TATTCCTGGAGCTCGGGCAGACGGCAGGGCAGCTCATaGCCAGTTAGGGAGCAGCGAACCTTGCGGGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: YSWSSGRRQGSS*PVREQRTLRVL Trigger: CAACACCCGCAAGGTTCGCTGCTCCCTAACTGGCCATGAGCTGCCCTGCCGTCTGCCCGAGCTCCAGGAATA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | CATGGCCAGTTAGGGAGCAGCGAACCTTGCGGGTGTTaGGCAGTAGTCTCAAGCTGGGGTGCTGGCGCAAGA | + |
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Preference number: 6 (lower is better) Translates to: HGQLGSSEPCGC*AVVSSWGAGAR Trigger: TCTTGCGCCAGCACCCCAGCTTGAGACTACTGCCCAACACCCGCAAGGTTCGCTGCTCCCTAACTGGCCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 72 bp | TCATGGCCAGTTAGGGAGCAGCGAACCTTGCGGGTGTaGGGCAGTAGTCTCAAGCTGGGGTGCTGGCGCAAG | + |
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Preference number: 6 (lower is better) Translates to: SWPVREQRTLRV*GSSLKLGCWRK Trigger: CTTGCGCCAGCACCCCAGCTTGAGACTACTGCCCAACACCCGCAAGGTTCGCTGCTCCCTAACTGGCCATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | AGCGAACCTTGCGGGTGTTGGGCAGTAGTCTCAAGCTaGGGTGCTGGCGCAAGAATGCAAGCACATCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SEPCGCWAVVSS*GAGARMQAHQR Trigger: CCTCTGATGTGCTTGCATTCTTGCGCCAGCACCCCAGCTTGAGACTACTGCCCAACACCCGCAAGGTTCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 90 bp | TACCTCCGGCCCTGGGTGTGCCTCAGCACGTGTTCTGGGGACTTATaGATGTGCCTCAGGGTGAGTTTGCAGAACAGTTGGTGCCGATTC | + |
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Preference number: 6 (lower is better) Translates to: YLRPWVCLSTCSGDL*MCLRVSLQNSWCRF Trigger: GAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | ATACCTCCGGCCCTGGGTGTGCCTCAGCACGTGTTCTaGGGACTTATTGATGTGCCTCAGGGTGAGTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: IPPALGVPQHVF*GLIDVPQGEFA Trigger: TGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | TCATGCTGTCGTCACTCAAGGCGTCTTCCTCGTCACTaGAAGCTGGCTCCCAGAAACCTGTTCTCTGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: SCCRHSRRLPRH*KLAPRNLFSGL Trigger: CAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGAGTGACGACAGCATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | TCGTCACTGGAAGCTGGCTCCCAGAAACCTGTTCTCTaGCCTGGGAGTTCATCACTGTTCGTCTGGTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SSLEAGSQKPVL*PGSSSLFVWSS Trigger: AGAGGACCAGACGAACAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | GTGAGCTGCTTCTTCCTCAGTTTACGACCCCTCTTGTaGCCCACTCTGGCCTCTTCCCTCTCTCTAAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: VSCFFLSLRPLL*PTLASSLSLKL Trigger: GAGCTTTAGAGAGAGGGAAGAGGCCAGAGTGGGCCACAAGAGGGGTCGTAAACTGAGGAAGAAGCAGCTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 72 bp | AAGTTAGAGAAGGAACTTGACAGCCGTTGGTACTTCTaGCCGCGGGTGTATTCCTGGAGCTCGGGCAGACGG | + |
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Preference number: 6 (lower is better) Translates to: KLEKELDSRWYF*PRVYSWSSGRR Trigger: CCGTCTGCCCGAGCTCCAGGAATACACCCGCGGCAAGAAGTACCAACGGCTGTCAAGTTCCTTCTCTAACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | ACTGGAAGCTGGCTCCCAGAAACCTGTTCTCTGGCCTaGGAGTTCATCACTGTTCGTCTGGTCCTCTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: TGSWLPETCSLA*EFITVRLVLSL Trigger: AAGAGAGAGGACCAGACGAACAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 90 bp | GCAGGCAGGGACATATTCCACACCTTGTTTCTGACACTCTTCATATaGATGAAGTGCTCTCTGATACCTCCGGCCCTGGGTGTGCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: AGRDIFHTLFLTLFI*MKCSLIPPALGVPQ Trigger: CTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAATATGAAGAGTGTCAGAAACAAGGTGTGGAATATGTCCCTGCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 90 bp | CTCAGCACGTGTTCTGGGGACTTATTGATGTGCCTCAGGGTGAGTTaGCAGAACAGTTGGTGCCGATTCTTTGTGCTGGGCACAATGTGT | + |
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Preference number: 6 (lower is better) Translates to: LSTCSGDLLMCLRVS*QNSWCRFFVLGTMC Trigger: ACACATTGTGCCCAGCACAAAGAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS TCA 72 bp | TCTGGCCTCTTCCCTCTCTCTAAAGCTCTTCTCTTCTaGATGCTCCGGCTTCTCATCCTGTTGGTCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: SGLFPLSKALLF*MLRLLILLVCQ Trigger: CTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAGCTTTAGAGAGAGGGAAGAGGCCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 72 bp | TGTTCTGGGGACTTATTGATGTGCCTCAGGGTGAGTTaGCAGAACAGTTGGTGCCGATTCTTTGTGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: CSGDLLMCLRVS*QNSWCRFFVLG Trigger: GCCCAGCACAAAGAATCGGCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS TCA 72 bp | CTCGAAAGCTGCGTAATCGAAGTTAGAGAAGGAACTTaGCAGCCGTTGGTACTTCTTGCCGCGGGTGTATTC | + |
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Preference number: 6 (lower is better) Translates to: LESCVIEVREGT*QPLVLLAAGVF Trigger: GAATACACCCGCGGCAAGAAGTACCAACGGCTGTCAAGTTCCTTCTCTAACTTCGATTACGCAGCTTTCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | CAGTTGGTGCCGATTCTTTGTGCTGGGCACAATGTGTaGCTCGAAAGCTGCGTAATCGAAGTTAGAGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: QLVPILCAGHNV*LESCVIEVREG Trigger: TCCTTCTCTAACTTCGATTACGCAGCTTTCGAGCCACACATTGTGCCCAGCACAAAGAATCGGCACCAACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CCA 72 bp | CTCTTCTCTTCTGAATGCTCCGGCTTCTCATCCTGTTaGTCTGTCAGAAAGTCTTCAGGAGTGTCATCGTTC | + |
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Preference number: 6 (lower is better) Translates to: LFSSECSGFSSC*SVRKSSGVSSF Trigger: GAACGATGACACTCCTGAAGACTTTCTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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| CDS CAA 72 bp | GACATATTCCACACCTTGTTTCTGACACTCTTCATATaGATGAAGTGCTCTCTGATACCTCCGGCCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: DIFHTLFLTLFI*MKCSLIPPALG Trigger: ACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAATATGAAGAGTGTCAGAAACAAGGTGTGGAATATGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015017.8 |
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