Pregenerated sensors for SURF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015790Ensembl transcript IDs: ENSMUST00000015934.13, ENSMUST00000129682.2, ENSMUST00000129822.8, ENSMUST00000167661.7, ENSMUST00000183520.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTGCATGTGCTCATTGCGCAGAGTCACTCTCGTCTGTCCTCCGATaGGCCCGCCGGGGGCTGTGCTGTCTGTGGAGACAGGAGTCAGCT | + |
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Preference number: 1 (lower is better) Translates to: TACAHCAESLSSVLR*ARRGLCCLWRQESA Trigger: AGCTGACTCCTGTCTCCACAGACAGCACAGCCCCCGGCGGGCCCATCGGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| 3UTR GCA 90 bp | GATGTGGCCGCACACAGTCCGTACCAGGTAAGGATGTACTGCATGTaGTCATTGCGCAGAGTCACTCTCGTCTGTCCTCCGATGGGCCCG | + |
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Preference number: 1 (lower is better) Translates to: DVAAHSPYQVRMYCM*SLRRVTLVCPPMGP Trigger: CGGGCCCATCGGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTGGTACGGACTGTGTGCGGCCACATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR CCA 90 bp | AGGATGGTGACTCCCAAGTCAGAGCAATGGAAAGGAGTAACTACATaGGCCCCACTTTCAGTTGAGGATAGTCTGCCAGCATCTCGCGCC | + |
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Preference number: 1 (lower is better) Translates to: RMVTPKSEQWKGVTT*APLSVEDSLPASRA Trigger: GGCGCGAGATGCTGGCAGACTATCCTCAACTGAAAGTGGGGCCCATGTAGTTACTCCTTTCCATTGCTCTGACTTGGGAGTCACCATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR TCA 90 bp | TCCTTTCTGGGCTGTTCTCCGGAACAAAGGGCTTCCTGTTTTCTGTaGGCCTCACTATGCCAACTAGGTCTACTTCTCCCAGAACCTGGC | + |
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Preference number: 1 (lower is better) Translates to: SFLGCSPEQRASCFL*ASLCQLGLLLPEPG Trigger: GCCAGGTTCTGGGAGAAGTAGACCTAGTTGGCATAGTGAGGCTCACAGAAAACAGGAAGCCCTTTGTTCCGGAGAACAGCCCAGAAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR CCA 90 bp | TCTGTGAGCCTCACTATGCCAACTAGGTCTACTTCTCCCAGAACCTaGCCTTTCTGTCTGGTCTCAGGATTCACTTTCTTCCTGGGAACA | + |
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Preference number: 1 (lower is better) Translates to: SVSLTMPTRSTSPRT*PFCLVSGFTFFLGT Trigger: TGTTCCCAGGAAGAAAGTGAATCCTGAGACCAGACAGAAAGGCCAGGTTCTGGGAGAAGTAGACCTAGTTGGCATAGTGAGGCTCACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR CCA 90 bp | ACAGGATCCACCATGGTCCGAGGCATTATGTACAACTCTTTAGAGTaGTCAAAGTGGCCCCTGACCTTCACTGGCCTGTACTCCAAATTT | + |
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Preference number: 1 (lower is better) Translates to: TGSTMVRGIMYNSLE*SKWPLTFTGLYSKF Trigger: AAATTTGGAGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAAAGAGTTGTACATAATGCCTCGGACCATGGTGGATCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR CCA 90 bp | ACCATGGTCCGAGGCATTATGTACAACTCTTTAGAGTGGTCAAAGTaGCCCCTGACCTTCACTGGCCTGTACTCCAAATTTTTCAGTTCC | + |
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Preference number: 1 (lower is better) Translates to: TMVRGIMYNSLEWSK*PLTFTGLYSKFFSS Trigger: GGAACTGAAAAATTTGGAGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAAAGAGTTGTACATAATGCCTCGGACCATGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR CCA 90 bp | ACAAACCCTCTATTAACCAGGATGGTGACTCCCAAGTCAGAGCAATaGAAAGGAGTAACTACATGGGCCCCACTTTCAGTTGAGGATAGT | + |
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Preference number: 1 (lower is better) Translates to: TNPLLTRMVTPKSEQ*KGVTTWAPLSVEDS Trigger: ACTATCCTCAACTGAAAGTGGGGCCCATGTAGTTACTCCTTTCCATTGCTCTGACTTGGGAGTCACCATCCTGGTTAATAGAGGGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR TCA 90 bp | AGATCTTTATTTTATGGTTGTTGGGAACAGGCTCCTTACTTCACATaGTGGGTGTCCGACGTACAAATTTTTGGAACCACAAATATGATG | + |
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Preference number: 1 (lower is better) Translates to: RSLFYGCWEQAPYFT*WVSDVQIFGTTNMM Trigger: CATCATATTTGTGGTTCCAAAAATTTGTACGTCGGACACCCATCATGTGAAGTAAGGAGCCTGTTCCCAACAACCATAAAATAAAGATCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR CAA 90 bp | GCCGCACACAGTCCGTACCAGGTAAGGATGTACTGCATGTGCTCATaGCGCAGAGTCACTCTCGTCTGTCCTCCGATGGGCCCGCCGGGG | + |
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Preference number: 2 (lower is better) Translates to: AAHSPYQVRMYCMCS*RRVTLVCPPMGPPG Trigger: CCCCGGCGGGCCCATCGGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTGGTACGGACTGTGTGCGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR-3UTR GCA 90 bp | TCCGTACCAGGTAAGGATGTACTGCATGTGCTCATTGCGCAGAGTCACTCTCGTGCCCGCCGGGGGCTGTaGTGTCTGTGGAGACAGGAG | + |
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Preference number: 2 (lower is better) Translates to: SVPGKDVLHVLIAQSHSRARRGL*CLWRQE Trigger: CTCCTGTCTCCACAGACAGCACAGCCCCCGGCGGGC...ACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTGGTACGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| 3UTR-3UTR TCA 90 bp | CTTGGCCATAGCTTCCAGGTCTCGATAATACCAGTGATTCCTTTCTGGGCTGTTGGTCAAAGTGGCCCCTaGCCTTCACTGGCCTGTACT | + |
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Preference number: 2 (lower is better) Translates to: LGHSFQVSIIPVIPFWAVGQSGP*PSLACT Trigger: AGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACC...AACAGCCCAGAAAGGAATCACTGGTATTATCGAGACCTGGAAGCTATGGCCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR-3UTR CCA 90 bp | AATTTTTGGAACCACAAATATGATGTGGCCGCACACAGTCCGTACCAGGTAAGGGGGCTGTGCTGTCTGTaGAGACAGGAGTCAGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: NFWNHKYDVAAHSPYQVRGLCCL*RQESAL Trigger: CAGAGCTGACTCCTGTCTCCACAGACAGCACAGCCC...CCTTACCTGGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| 3UTR-3UTR CCA 90 bp | GTCTACTTCTCCCAGAACCTGGCCTTTCTGTCTGGTCTCAGGATTCACTTTCTTTTAGAGTGGTCAAAGTaGCCCCTGACCTTCACTGGC | + |
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Preference number: 2 (lower is better) Translates to: VYFSQNLAFLSGLRIHFLLEWSK*PLTFTG Trigger: GCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAA...AAGAAAGTGAATCCTGAGACCAGACAGAAAGGCCAGGTTCTGGGAGAAGTAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR-3UTR CCA 90 bp | TGTTATCTTGGCCATAGCTTCCAGGTCTCGATAATACCAGTGATTCCTTTCTGGAAAGGAGTAACTACATaGGCCCCACTTTCAGTTGAG | + |
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Preference number: 2 (lower is better) Translates to: CYLGHSFQVSIIPVIPFWKGVTT*APLSVE Trigger: CTCAACTGAAAGTGGGGCCCATGTAGTTACTCCTTT...CCAGAAAGGAATCACTGGTATTATCGAGACCTGGAAGCTATGGCCAAGATAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR-3UTR CCA 90 bp | TTAGAGTGGTCAAAGTGGCCCCTGACCTTCACTGGCCTGTACTCCAAATTTTTCAAGATCTTTATTTTATaGTTGTTGGGAACAGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: LEWSKWPLTFTGLYSKFFKIFIL*LLGTGS Trigger: GGAGCCTGTTCCCAACAACCATAAAATAAAGATCTT...GAAAAATTTGGAGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000167661.7 |
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| 3UTR-3UTR CCA 90 bp | AATTTTTGGAACCACAAATATGATGTGGCCGCACACAGTCCGTACCAGGTAAGGAAGATCTTTATTTTATaGTTGTTGGGAACAGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: NFWNHKYDVAAHSPYQVRKIFIL*LLGTGS Trigger: GGAGCCTGTTCCCAACAACCATAAAATAAAGATCTT...CCTTACCTGGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR GCA 72 bp | GCACACAGTCCGTACCAGGTAAGGATGTACTGCATGTaGTCATTGCGCAGAGTCACTCTCGTCTGTCCTCCG | + |
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Preference number: 3 (lower is better) Translates to: AHSPYQVRMYCM*SLRRVTLVCPP Trigger: CGGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTGGTACGGACTGTGTGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR GCA 72 bp | GCAATAAGTTTCAGCTTCCATTTCCGACGTTGGACCTaGCAAGTCCCCAGGCCAAAAGCAGTAGCAGGGATT | + |
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Preference number: 3 (lower is better) Translates to: AISFSFHFRRWT*QVPRPKAVAGI Trigger: AATCCCTGCTACTGCTTTTGGCCTGGGGACTTGGCAGGTCCAACGTCGGAAATGGAAGCTGAAACTTATTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR CCA 72 bp | ACCATGGTCCGAGGCATTATGTACAACTCTTTAGAGTaGTCAAAGTGGCCCCTGACCTTCACTGGCCTGTAC | + |
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Preference number: 3 (lower is better) Translates to: TMVRGIMYNSLE*SKWPLTFTGLY Trigger: GTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAAAGAGTTGTACATAATGCCTCGGACCATGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR TCA 72 bp | GGGTGTCCGACGTACAAATTTTTGGAACCACAAATATaGTGTGGCCGCACACAGTCCGTACCAGGTAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: GCPTYKFLEPQI*CGRTQSVPGKD Trigger: ATCCTTACCTGGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATTTGTACGTCGGACACCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR CCA 72 bp | CGAGGCATTATGTACAACTCTTTAGAGTGGTCAAAGTaGCCCCTGACCTTCACTGGCCTGTACTCCAAATTT | + |
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Preference number: 3 (lower is better) Translates to: RGIMYNSLEWSK*PLTFTGLYSKF Trigger: AAATTTGGAGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAAAGAGTTGTACATAATGCCTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129822.8 ENSMUST00000167661.7 |
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| 3UTR CCA 72 bp | TTACTTCACATGATGGGTGTCCGACGTACAAATTTTTaGAACCACAAATATGATGTGGCCGCACACAGTCCG | + |
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Preference number: 3 (lower is better) Translates to: LLHMMGVRRTNF*NHKYDVAAHSP Trigger: CGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATTTGTACGTCGGACACCCATCATGTGAAGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| 3UTR TCA 72 bp | TTTTATGGTTGTTGGGAACAGGCTCCTTACTTCACATaGTGGGTGTCCGACGTACAAATTTTTGGAACCACA | + |
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Preference number: 3 (lower is better) Translates to: FYGCWEQAPYFT*WVSDVQIFGTT Trigger: TGTGGTTCCAAAAATTTGTACGTCGGACACCCATCATGTGAAGTAAGGAGCCTGTTCCCAACAACCATAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| CDS-3UTR CCA 90 bp | CAGAGTCACTCTCGTCTGTCCTCCGATGGGCCCGCCGGGGGCTGTGCTGTCTGTAAAGGAGTAACTACATaGGCCCCACTTTCAGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: QSHSRLSSDGPAGGCAVCKGVTT*APLSVE Trigger: CTCAACTGAAAGTGGGGCCCATGTAGTTACTCCTTT...ACAGACAGCACAGCCCCCGGCGGGCCCATCGGAGGACAGACGAGAGTGACTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| 3UTR CAA 72 bp | AGTCCGTACCAGGTAAGGATGTACTGCATGTGCTCATaGCGCAGAGTCACTCTCGTCTGTCCTCCGATGGGC | + |
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Preference number: 4 (lower is better) Translates to: SPYQVRMYCMCS*RRVTLVCPPMG Trigger: GCCCATCGGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTGGTACGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167661.7 ENSMUST00000183520.8 |
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| CDS-3UTR TCA 90 bp | CAGGTAAGGATGTACTGCATGTGCTCATTGCGCAGAGTCACTCTCGTCTGTCCTGGTCAAAGTGGCCCCTaGCCTTCACTGGCCTGTACT | + |
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Preference number: 4 (lower is better) Translates to: QVRMYCMCSLRRVTLVCPGQSGP*PSLACT Trigger: AGTACAGGCCAGTGAAGGTCAGGGGCCACTTTGACC...AGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR CCA 90 bp | GGTAAGGATGTACTGCATGTGCTCATTGCGCAGAGTCACTCTCGTCTGTCCTCCTTAGAGTGGTCAAAGTaGCCCCTGACCTTCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: GKDVLHVLIAQSHSRLSSLEWSK*PLTFTG Trigger: GCCAGTGAAGGTCAGGGGCCACTTTGACCACTCTAA...GGAGGACAGACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR GCA 90 bp | GACGTACAAATTTTTGGAACCACAAATATGATGTGGCCGCACACAGTCCGTACCTTCCGACGTTGGACCTaGCAAGTCCCCAGGCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: DVQIFGTTNMMWPHTVRTFRRWT*QVPRPK Trigger: TTTTGGCCTGGGGACTTGGCAGGTCCAACGTCGGAA...GGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATTTGTACGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR TCA 90 bp | GGCTCCTTACTTCACATGATGGGTGTCCGACGTACAAATTTTTGGAACCACAAACCTACAGACCATCCCTaGGCGGACAGAAAACCCAAA | + |
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Preference number: 4 (lower is better) Translates to: GSLLHMMGVRRTNFWNHKPTDHP*ADRKPK Trigger: TTTGGGTTTTCTGTCCGCTCAGGGATGGTCTGTAGG...TTTGTGGTTCCAAAAATTTGTACGTCGGACACCCATCATGTGAAGTAAGGAGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR CCA 90 bp | TCCAAATTTTTCAGTTCCATTGGGTCTGCTGGTAGAGGGATGGGCTCAGCCATGAAAAGCAGGAACCACTaGAGAAAAGAATCGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SKFFSSIGSAGRGMGSAMKSRNH*RKESSS Trigger: AGAGGACGATTCTTTTCTCCAGTGGTTCCTGCTTTT...CATGGCTGAGCCCATCCCTCTACCAGCAGACCCAATGGAACTGAAAAATTTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000129682.2 |
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| CDS-3UTR CCA 90 bp | CGACGTACAAATTTTTGGAACCACAAATATGATGTGGCCGCACACAGTCCGTACCCAGTGATTCCTTTCTaGGCTGTTCTCCGGAACAAA | + |
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Preference number: 4 (lower is better) Translates to: RRTNFWNHKYDVAAHSPYPVIPF*AVLRNK Trigger: TTTGTTCCGGAGAACAGCCCAGAAAGGAATCACTGG...GTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATTTGTACGTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR TCA 90 bp | GATCTTTATTTTATGGTTGTTGGGAACAGGCTCCTTACTTCACATGATGGGTGTGGAAGTCTGCATCAATaGAAATGGGGTCCGCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: DLYFMVVGNRLLTSHDGCGSLHQ*KWGPLL Trigger: CAGGAGCGGACCCCATTTTCATTGATGCAGACTTCC...ACACCCATCATGTGAAGTAAGGAGCCTGTTCCCAACAACCATAAAATAAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR CCA 90 bp | AATTTTTGGAACCACAAATATGATGTGGCCGCACACAGTCCGTACCAGGTAAGGAAAAGCAGGAACCACTaGAGAAAAGAATCGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: NFWNHKYDVAAHSPYQVRKSRNH*RKESSS Trigger: AGAGGACGATTCTTTTCTCCAGTGGTTCCTGCTTTT...CCTTACCTGGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR CCA 90 bp | ATCTTTATTTTATGGTTGTTGGGAACAGGCTCCTTACTTCACATGATGGGTGTCGCCCCTGACCTTCACTaGCCTGTACTCCAAATTTTT | + |
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Preference number: 4 (lower is better) Translates to: IFILWLLGTGSLLHMMGVAPDLH*PVLQIF Trigger: AAAAATTTGGAGTACAGGCCAGTGAAGGTCAGGGGC...GACACCCATCATGTGAAGTAAGGAGCCTGTTCCCAACAACCATAAAATAAAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR CCA 90 bp | ATCTTTATTTTATGGTTGTTGGGAACAGGCTCCTTACTTCACATGATGGGTGTCGAAGTTTTACAACACTaGCATGGGGTCAGAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: IFILWLLGTGSLLHMMGVEVLQH*HGVRSP Trigger: AGGGCTTCTGACCCCATGCCAGTGTTGTAAAACTTC...GACACCCATCATGTGAAGTAAGGAGCCTGTTCCCAACAACCATAAAATAAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000167661.7 |
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| CDS TCA 90 bp | TACAGACCATCCCTGAGCGGACAGAAAACCCAAAGACGCTCCTCCTaGCAGCGCAGAACTGGGCCCGTCCCGCGTAGGCCCATTGCGACC | + |
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Preference number: 5 (lower is better) Translates to: YRPSLSGQKTQRRSS*QRRTGPVPRRPIAT Trigger: GGTCGCAATGGGCCTACGCGGGACGGGCCCAGTTCTGCGCTGTCAGGAGGAGCGTCTTTGGGTTTTCTGTCCGCTCAGGGATGGTCTGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015934.13 ENSMUST00000183520.8 |
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| CDS-3UTR CAA 90 bp | TCCGTACCAGGTAAGGATGTACTGCATGTGCTCATTGCGCAGAGTCACTCTCGTAATTTTTCAGTTCCATaGGGTCTGCTGGTAGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: SVPGKDVLHVLIAQSHSRNFSVP*GLLVEG Trigger: TCCCTCTACCAGCAGACCCAATGGAACTGAAAAATT...ACGAGAGTGACTCTGCGCAATGAGCACATGCAGTACATCCTTACCTGGTACGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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| CDS-3UTR CAA 90 bp | AATTTTTGGAACCACAAATATGATGTGGCCGCACACAGTCCGTACCAGGTAAGGTCCGCTCCTGTTATCTaGGCCATAGCTTCCAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: NFWNHKYDVAAHSPYQVRSAPVI*AIASRS Trigger: AGACCTGGAAGCTATGGCCAAGATAACAGGAGCGGA...CCTTACCTGGTACGGACTGTGTGCGGCCACATCATATTTGTGGTTCCAAAAATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183520.8 |
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