Pregenerated sensors for SUN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040985Ensembl transcript IDs: ENSMUST00000043377.6, ENSMUST00000102909.8
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGTTTCCCTCCCACTCCCAATCTTTGATTCTTAGGGGTGCAATCTaGCGTAAGGAAATAGTAAACATCCTTGGACATTCTGGCTGCACA | + |
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Preference number: 1 (lower is better) Translates to: GFPSHSQSLILRGAI*RKEIVNILGHSGCT Trigger: TGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCCTTACGTCAGATTGCACCCCTAAGAATCAAAGATTGGGAGTGGGAGGGAAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAAAATAGTAAACATCCTTaGACATTCTGGCTGCACAGC | + |
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Preference number: 2 (lower is better) Translates to: FNSYCLVGMSLGFPSHSQNSKHP*TFWLHS Trigger: GCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATT...TTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CCA 90 bp | TCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTGACGTCAGTAGTGGCCTaGTCCTGCACAGCATCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SYCLVGMSLGFPSHSQSLTSVVA*SCTASR Trigger: CCGAGATGCTGTGCAGGACCAGGCCACTACTGACGT...CAAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CCA 90 bp | TTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTACGTCAGTAGTGGCCTaGTCCTGCACAGCATCTCGG | + |
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Preference number: 4 (lower is better) Translates to: FLLPSRNEFGVSLPLPIFTSVVA*SCTASR Trigger: CCGAGATGCTGTGCAGGACCAGGCCACTACTGACGT...AAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | CAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCGACAGAGGCTCCTGCTaGCTTCAAGGCATAATCAGC | + |
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Preference number: 4 (lower is better) Translates to: QFLLPSRNEFGVSLPLPIDRGSC*LQGIIS Trigger: GCTGATTATGCCTTGAAGTCAGCAGGAGCCTCTGTC...GATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | TTCAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAAGACAGAGGCTCCTGCTaGCTTCAAGGCATAATCAGC | + |
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Preference number: 4 (lower is better) Translates to: FNSYCLVGMSLGFPSHSQDRGSC*LQGIIS Trigger: GCTGATTATGCCTTGAAGTCAGCAGGAGCCTCTGTC...TTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | TTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTGAGGCATCTCATAGTTaGGGAACCCTATGCCATGCC | + |
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Preference number: 4 (lower is better) Translates to: FLLPSRNEFGVSLPLPIFEASHS*GTLCHA Trigger: GGCATGGCATAGGGTTCCTCAACTATGAGATGCCTC...AAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | ATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTGATTCTTAGGGGTGCAATCAGCTTAATCAGGATGTaGCCCTGGGAACCTGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: MSLGFPSHSQSLILRGAISLIRM*PWEPGK Trigger: CTTTCCAGGTTCCCAGGGTCACATCCTGATTAAGCT...GATTGCACCCCTAAGAATCAAAGATTGGGAGTGGGAGGGAAACCCCAAACTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR GCA 90 bp | GGAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACGTGCTCCATGGTAACTaGTGTTGGGATGATCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: GNSKHPWTFWLHSHCLLHVLHGN*CWDDLP Trigger: AGGAAGATCATCCCAACAGCAGTTACCATGGAGCAC...GTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR GCA 90 bp | GGAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACACCTTCTCCGAGATGTaGTCCATGGTAACTGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: GNSKHPWTFWLHSHCLLHTFSEM*SMVTAV Trigger: AACAGCAGTTACCATGGAGCACATCTCGGAGAAGGT...GTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CCA 90 bp | CTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTGATTCTCATGGTAACTGCTGTTaGGATGATCTTCCTGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: LPSRNEFGVSLPLPIFDSHGNCC*DDLPGE Trigger: CTCGCCAGGAAGATCATCCCAACAGCAGTTACCATG...AGAATCAAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | TTCAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAAAGCTTAATCAGGATGTaGCCCTGGGAACCTGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: FNSYCLVGMSLGFPSHSQSLIRM*PWEPGK Trigger: CTTTCCAGGTTCCCAGGGTCACATCCTGATTAAGCT...TTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR GCA 90 bp | ATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTGATTCTTAGGGGTGCAATCACCTTCTCCGAGATGTaGTCCATGGTAACTGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: MSLGFPSHSQSLILRGAITFSEM*SMVTAV Trigger: AACAGCAGTTACCATGGAGCACATCTCGGAGAAGGT...GATTGCACCCCTAAGAATCAAAGATTGGGAGTGGGAGGGAAACCCCAAACTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR GCA 90 bp | AATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTGTGCTCCATGGTAACTaGTGTTGGGATGATCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: NSYCLVGMSLGFPSHSQSVLHGN*CWDDLP Trigger: AGGAAGATCATCCCAACAGCAGTTACCATGGAGCAC...AGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | GGAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACATTTTTGTAACTTTCTaGGGTCCCAGCTTCAATGAC | + |
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Preference number: 4 (lower is better) Translates to: GNSKHPWTFWLHSHCLLHIFVTF*GPSFND Trigger: GTCATTGAAGCTGGGACCTCAGAAAGTTACAAAAAT...GTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | GAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACCATTTTTGTAACTTTCTaGGGTCCCAGCTTCAATGAC | + |
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Preference number: 4 (lower is better) Translates to: EIVNILGHSGCTATAFCTIFVTF*GPSFND Trigger: GTCATTGAAGCTGGGACCTCAGAAAGTTACAAAAAT...GGTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | GGAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACTGGAGCTCAAATGTTTaGATGGTTGCTTCCATTTTG | + |
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Preference number: 4 (lower is better) Translates to: GNSKHPWTFWLHSHCLLHWSSNV*MVASIL Trigger: CAAAATGGAAGCAACCATTCAAACATTTGAGCTCCA...GTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | CAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTGGAGCTCAAATGTTTaGATGGTTGCTTCCATTTTG | + |
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Preference number: 4 (lower is better) Translates to: QFLLPSRNEFGVSLPLPIWSSNV*MVASIL Trigger: CAAAATGGAAGCAACCATTCAAACATTTGAGCTCCA...GATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CCA 90 bp | TCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTGCAGTGTATAATTGCCTaGGTTTTTGAGGAAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: SYCLVGMSLGFPSHSQSLQCIIA*VFEETL Trigger: CAGAGTTTCCTCAAAAACCCAGGCAATTATACACTG...CAAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043377.6 |
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| CDS-3UTR CCA 90 bp | TTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTCAAACACGTATACTTTaGATGTCCCCAGTTGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: FLLPSRNEFGVSLPLPIFQTRIL*MSPVAK Trigger: CTTAGCAACTGGGGACATCCAAAGTATACGTGTTTG...AAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR TCA 90 bp | TTAGTAAAATTCATTCAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCGAGGCATCTCATAGTTaGGGAACCCTATGCCATGCC | + |
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Preference number: 4 (lower is better) Translates to: LVKFIQFLLPSRNEFGVSEASHS*GTLCHA Trigger: GGCATGGCATAGGGTTCCTCAACTATGAGATGCCTC...GGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAATGAATTTTACTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| 3UTR CAA 72 bp | AATTCATTCAATTCTTACTGCCTAGTAGGAATGAGTTaGGGGTTTCCCTCCCACTCCCAATCTTTGATTCTT | + |
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Preference number: 4 (lower is better) Translates to: NSFNSYCLVGMS*GFPSHSQSLIL Trigger: AAGAATCAAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAATGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR GCA 90 bp | TTAGTAAAATTCATTCAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCTTTAAAAGTTCCTGTTaGTCCTTAGGCATGCGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LVKFIQFLLPSRNEFGVSFKSSC*SLGMRS Trigger: ACTCCGCATGCCTAAGGAGCAACAGGAACTTTTAAA...GGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAATGAATTTTACTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043377.6 |
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| CDS-3UTR TCA 90 bp | TTAGTAAAATTCATTCAATTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCAATTGCCTGGGTTTTTaGGGAAACTCTGTTTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: LVKFIQFLLPSRNEFGVSNCLGF*GNSVSL Trigger: TAAAGAAACAGAGTTTCCTCAAAAACCCAGGCAATT...GGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAATTGAATGAATTTTACTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043377.6 |
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| CDS TCA 90 bp | GTAACTGCTGTTGGGATGATCTTCCTGGCGAGCTTAATCAGGATGTaGCCCTGGGAACCTGGAAAGGCCCAGCACTTCCCAGGGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: VTAVGMIFLASLIRM*PWEPGKAQHFPGWT Trigger: TGTCCACCCTGGGAAGTGCTGGGCCTTTCCAGGTTCCCAGGGTCACATCCTGATTAAGCTCGCCAGGAAGATCATCCCAACAGCAGTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS GCA 90 bp | GGTGCACTTGAGATGTTTCCTGAAGGGGACACCTTCTCCGAGATGTaGTCCATGGTAACTGCTGTTGGGATGATCTTCCTGGCGAGCTTA | + |
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Preference number: 5 (lower is better) Translates to: GALEMFPEGDTFSEM*SMVTAVGMIFLASL Trigger: TAAGCTCGCCAGGAAGATCATCCCAACAGCAGTTACCATGGAGCACATCTCGGAGAAGGTGTCCCCTTCAGGAAACATCTCAAGTGCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CAA 90 bp | GGAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACATCAGCCAACTGTATTaGGTCCCCTCTGAACTTTTT | + |
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Preference number: 5 (lower is better) Translates to: GNSKHPWTFWLHSHCLLHISQLY*VPSELF Trigger: AAAAAGTTCAGAGGGGACCAAATACAGTTGGCTGAT...GTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CAA 90 bp | CGTAAGGAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCATCAGCCAACTGTATTaGGTCCCCTCTGAACTTTTT | + |
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Preference number: 5 (lower is better) Translates to: RKEIVNILGHSGCTATAFISQLY*VPSELF Trigger: AAAAAGTTCAGAGGGGACCAAATACAGTTGGCTGAT...GAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTCCTTACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CAA 90 bp | GAAATAGTAAACATCCTTGGACATTCTGGCTGCACAGCCACTGCCTTCTGCACCAGAATTTCACGAAAATaGTTCTCCAAAGTCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: EIVNILGHSGCTATAFCTRISRK*FSKVWL Trigger: AAGCCAGACTTTGGAGAACAATTTTCGTGAAATTCT...GGTGCAGAAGGCAGTGGCTGTGCAGCCAGAATGTCCAAGGATGTTTACTATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS-3UTR CAA 90 bp | TTCTTACTGCCTAGTAGGAATGAGTTTGGGGTTTCCCTCCCACTCCCAATCTTTAGAATTTCACGAAAATaGTTCTCCAAAGTCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: FLLPSRNEFGVSLPLPIFRISRK*FSKVWL Trigger: AAGCCAGACTTTGGAGAACAATTTTCGTGAAATTCT...AAAGATTGGGAGTGGGAGGGAAACCCCAAACTCATTCCTACTAGGCAGTAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS TCA 72 bp | GTTGGGATGATCTTCCTGGCGAGCTTAATCAGGATGTaGCCCTGGGAACCTGGAAAGGCCCAGCACTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: VGMIFLASLIRM*PWEPGKAQHFP Trigger: TGGGAAGTGCTGGGCCTTTCCAGGTTCCCAGGGTCACATCCTGATTAAGCTCGCCAGGAAGATCATCCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS GCA 72 bp | AGGGGACACCTTCTCCGAGATGTGCTCCATGGTAACTaGTGTTGGGATGATCTTCCTGGCGAGCTTAATCAG | + |
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Preference number: 6 (lower is better) Translates to: RGHLLRDVLHGN*CWDDLPGELNQ Trigger: CTGATTAAGCTCGCCAGGAAGATCATCCCAACAGCAGTTACCATGGAGCACATCTCGGAGAAGGTGTCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS GCA 72 bp | GAGATGTTTCCTGAAGGGGACACCTTCTCCGAGATGTaGTCCATGGTAACTGCTGTTGGGATGATCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: EMFPEGDTFSEM*SMVTAVGMIFL Trigger: CAGGAAGATCATCCCAACAGCAGTTACCATGGAGCACATCTCGGAGAAGGTGTCCCCTTCAGGAAACATCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS TCA 72 bp | CCTGGTAATTATAGAGCCGGGAGCCATATTCGGCAATaGCAGTGTATAATTGCCTGGGTTTTTGAGGAAACT | + |
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Preference number: 6 (lower is better) Translates to: PGNYRAGSHIRQ*QCIIAWVFEET Trigger: AGTTTCCTCAAAAACCCAGGCAATTATACACTGTCATTGCCGAATATGGCTCCCGGCTCTATAATTACCAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043377.6 |
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| CDS CCA 72 bp | GCCGTGGACTCTAAATCGGTACAAACACGTATACTTTaGATGTCCCCAGTTGCTAAGGATTTGAAGTTTTAC | + |
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Preference number: 6 (lower is better) Translates to: AVDSKSVQTRIL*MSPVAKDLKFY Trigger: GTAAAACTTCAAATCCTTAGCAACTGGGGACATCCAAAGTATACGTGTTTGTACCGATTTAGAGTCCACGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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| CDS TCA 72 bp | TATTATTTTTGTAACTTTCTGAGGTCCCAGCTTCAATaGCAGAGGCTCCTGCTGACTTCAAGGCATAATCAG | + |
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Preference number: 6 (lower is better) Translates to: YYFCNFLRSQLQ*QRLLLTSRHNQ Trigger: CTGATTATGCCTTGAAGTCAGCAGGAGCCTCTGTCATTGAAGCTGGGACCTCAGAAAGTTACAAAAATAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043377.6 ENSMUST00000102909.8 |
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