RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SULF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016918

Ensembl transcript IDs: ENSMUST00000088585.10, ENSMUST00000177608.8, ENSMUST00000180062.8, ENSMUST00000185780.2, ENSMUST00000186051.7, ENSMUST00000186405.7

Found 570 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCCGGTATATTCTGGGAACTTCCGGTCTGACCCGGAACACCCTGTaGTTAACCTCTGGCACCCTCTCTCTGTCCCCTCACCCTTGTGAG +
Preference number: 1 (lower is better)
Translates to: FRYILGTSGLTRNTL*LTSGTLSLSPHPCE
Trigger: CTCACAAGGGTGAGGGGACAGAGAGAGGGTGCCAGAGGTTAAGCACAGGGTGTTCCGGGTCAGACCGGAAGTTCCCAGAATATACCGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 90 bp ATTCTGCAGAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTaGCCAGGAAGTCACCACCTTGTGTGGTTGGAGTCCCATTTGCTT +
Preference number: 1 (lower is better)
Translates to: ILQKPSLLAPSAQQR*PGSHHLVWLESHLL
Trigger: AAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTCTGCAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 90 bp GGTCAAAGGAGGTGTTTCCCCAACCACATGACTTGGGTCTTCACCTaGTTCTGCAGAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGA +
Preference number: 1 (lower is better)
Translates to: GQRRCFPNHMTWVFT*FCRSHLCWHQALSR
Trigger: TCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTCTGCAGAATCAGGTGAAGACCCAAGTCATGTGGTTGGGGAAACACCTCCTTTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 90 bp TCATGCATTCCTTGCTTTAAAACCGCAAGCAAACAGGCATGCGCATaGGCAGGAGAGAGTCCATGCTCAGAGGCATCTCGTGGGGGTCGA +
Preference number: 1 (lower is better)
Translates to: SCIPCFKTASKQACA*AGESPCSEASRGGR
Trigger: TCGACCCCCACGAGATGCCTCTGAGCATGGACTCTCTCCTGCGCATGCGCATGCCTGTTTGCTTGCGGTTTTAAAGCAAGGAATGCATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR GCA 90 bp TTCCGGTCATGCATTCCTTGCTTTAAAACCGCAAGCAAACAGGCATaGGCATGCGCAGGAGAGAGTCCATGCTCAGAGGCATCTCGTGGG +
Preference number: 1 (lower is better)
Translates to: FRSCIPCFKTASKQA*ACAGESPCSEASRG
Trigger: CCCACGAGATGCCTCTGAGCATGGACTCTCTCCTGCGCATGCGCATGCCTGTTTGCTTGCGGTTTTAAAGCAAGGAATGCATGACCGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 90 bp TGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTTTCCCCAACCACATaGCTTGGGTCTTCACCTGATTCTGCAGAAGCCATCTCTGCTGGC +
Preference number: 1 (lower is better)
Translates to: WRLTGKVKGGVSPTT*LGSSPDSAEAISAG
Trigger: GCCAGCAGAGATGGCTTCTGCAGAATCAGGTGAAGACCCAAGTCATGTGGTTGGGGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 90 bp GCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGCTaGCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCTTGCTT +
Preference number: 1 (lower is better)
Translates to: ASLPNGVNKMKENPC*PRGHSHFPVMHSLL
Trigger: AAGCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 90 bp CAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTaGAGTCCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAG +
Preference number: 1 (lower is better)
Translates to: QALSRGDQEVTTLCG*SPICFVWIRVTVQQ
Trigger: CTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 90 bp TCTCTGTCTCCACATCCTGGGAACATTTTTGTTGGTGCTGACTGGTaGGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCTGTCATAC +
Preference number: 1 (lower is better)
Translates to: SLSPHPGNIFVGADW*ADAQDETGAAALSY
Trigger: GTATGACAGAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAGGATGTGGAGACAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 90 bp AGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGATaGTGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAG +
Preference number: 1 (lower is better)
Translates to: SSSVIPLPLTTSPSG*CSSSHPICFSVFLQ
Trigger: CTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 90 bp TGGAGTCCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTaGAAAGGCTCTGTAGACAGCCCTCAGGTAGTTAGTCCAGTCCTC +
Preference number: 1 (lower is better)
Translates to: WSPICFVWIRVTVQQ*KGSVDSPQVVSPVL
Trigger: GAGGACTGGACTAACTACCTGAGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 90 bp AGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTGGAGTCCCATTTaGTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCT +
Preference number: 1 (lower is better)
Translates to: RGDQEVTTLCGWSPI*FVWIRVTVQQCKGS
Trigger: AGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGGTCACCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 90 bp CAGGAAGTCACCACCTTGTGTGGTTGGAGTCCCATTTGCTTTGTTTaGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGC +
Preference number: 1 (lower is better)
Translates to: QEVTTLCGWSPICFV*IRVTVQQCKGSVDS
Trigger: GCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 90 bp ACCCTTATCATACCTCTCACCTCCTCCACCAACCTCCCGGGCCATTaGGTCACATGCTTCCCTTTAGAAGCAGCTCATTGCTTTAGAGAT +
Preference number: 1 (lower is better)
Translates to: TLIIPLTSSTNLPGH*VTCFPLEAAHCFRD
Trigger: ATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGTGAGAGGTATGATAAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 90 bp TCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTaGCTGGCAAGGTCAAAGGAGGTGTTTCCCCAACCACATGACTTG +
Preference number: 1 (lower is better)
Translates to: SLDLTLVCSDAGFGG*LARSKEVFPQPHDL
Trigger: CAAGTCATGTGGTTGGGGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 90 bp CGTCGCCAAGACCTCTTCTTGGACATCACAGCACGGCAGCAGAAGTaGTGTTCATGTACAAAGGGAAACAGAAATGCCAGCCAGAACTGT +
Preference number: 1 (lower is better)
Translates to: RRQDLFLDITARQQK*CSCTKGNRNASQNC
Trigger: ACAGTTCTGGCTGGCATTTCTGTTTCCCTTTGTACATGAACATCACTTCTGCTGCCGTGCTGTGATGTCCAAGAAGAGGTCTTGGCGACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 90 bp CACCTCTCCCTTCTTGGTAGAATAGCAAGTTACAATGAGTCTGTGTaGGCATTGCCCACACACGTGCACATGAGTGTCTGCTGTGCACAT +
Preference number: 1 (lower is better)
Translates to: HLSLLGRIASYNESV*ALPTHVHMSVCCAH
Trigger: ATGTGCACAGCAGACACTCATGTGCACGTGTGTGGGCAATGCTCACACAGACTCATTGTAACTTGCTATTCTACCAAGAAGGGAGAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR CCA 90 bp AGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTaGAGGTTGACTGGCAAGGTCAAAGGAGGTGTTTCCCCAACCACA +
Preference number: 1 (lower is better)
Translates to: SFLSGLNVGLFRCRV*RLTGKVKGGVSPTT
Trigger: TGTGGTTGGGGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 90 bp TCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATaGAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTTTCC +
Preference number: 1 (lower is better)
Translates to: SHSSFLSGLNVGLFR*RVWRLTGKVKGGVS
Trigger: GGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 90 bp CATATGGCATCACAGTCAGTGTTTATGCCTTTGACACAGGATTGTTaGCATCACAAGGCACCCTTATCATACCTCTCACCTCCTCCACCA +
Preference number: 1 (lower is better)
Translates to: HMASQSVFMPLTQDC*HHKAPLSYLSPPPP
Trigger: TGGTGGAGGAGGTGAGAGGTATGATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGATGCCATATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 90 bp ACATGCTTCCCTTTAGAAGCAGCTCATTGCTTTAGAGATGCTAAATaGCATCAGGCAAGGTGGCAGAGAGACAGAAAACAAAGCCGGGAT +
Preference number: 1 (lower is better)
Translates to: TCFPLEAAHCFRDAK*HQARWQRDRKQSRD
Trigger: ATCCCGGCTTTGTTTTCTGTCTCTCTGCCACCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAAGCATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 90 bp AATACATGCAATGGTTCCTGGGAAAAGCGTACGCTAAACAATATGTaGTCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCT +
Preference number: 1 (lower is better)
Translates to: NTCNGSWEKRTLNNM*SILCVLAGGLFLCP
Trigger: AGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATATTGTTTAGCGTACGCTTTTCCCAGGAACCATTGCATGTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR CCA 90 bp CAGATAAATTCTCTGAAGCTGAAGCTCAGGGTAGGAAAACAGCAGTaGACAATCAGTGGACAAGCTTCCAGTTGTATGACCTTCTTCATG +
Preference number: 1 (lower is better)
Translates to: QINSLKLKLRVGKQQ*TISGQASSCMTFFM
Trigger: CATGAAGAAGGTCATACAACTGGAAGCTTGTCCACTGATTGTCCACTGCTGTTTTCCTACCCTGAGCTTCAGCTTCAGAGAATTTATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR GCA 90 bp GGCCACACACTGTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTaGTTTGCATCCTGTATTCTGTTTACTAACAAATGCTGTCACTCC +
Preference number: 1 (lower is better)
Translates to: GHTLFPLIDCFIFAS*FASCILFTNKCCHS
Trigger: GGAGTGACAGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAACAGTGTGTGGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR GCA 90 bp TATCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTaGTTATTCCCGCAGGATTTATTTCTTACCACCAACATTGTGAGC +
Preference number: 1 (lower is better)
Translates to: YLASTERAGHSCFIY*LFPQDLFLTTNIVS
Trigger: GCTCACAATGTTGGTGGTAAGAAATAAATCCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR TCA 90 bp CCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAATCATTaGACCAAAGATGATGATGTTGAAAAATTCCAGTGGTTAGAAACA +
Preference number: 1 (lower is better)
Translates to: PTKQTQYSKLKVQNH*TKDDDVEKFQWLET
Trigger: TGTTTCTAACCACTGGAATTTTTCAACATCATCATCTTTGGTTCAATGATTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR-3UTR TCA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTGTTGGTGCTGACTGGTaGGCTGATGCCCAAGATGAG +
Preference number: 2 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFVGADW*ADAQDE
Trigger: CTCATCTTGGGCATCAGCTCACCAGTCAGCACCAAC...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAGTGACTGTTCAGCAGTaGAAAGGCTCTGTAGACAGC +
Preference number: 2 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPVTVQQ*KGSVDS
Trigger: GCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCAC...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCATTGTTTGGATCAGGGTaGCTGTTCAGCAGTGCAAAG +
Preference number: 2 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPLFGSG*LFSSAK
Trigger: CTTTGCACTGCTGAACAGTCACCCTGATCCAAACAA...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGAGCGCTCAGCAGAGGTaGCCAGGAAGTCACCACCTT +
Preference number: 2 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQSAQQR*PGSHHL
Trigger: AAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCT...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTATGTCTGCTGTGCACATaGGTGTGCCCAGGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLCLLCT*VCPGRG
Trigger: CCCCCTCCCTGGGCACACTCATGTGCACAGCAGACA...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR CAA 90 bp CAGTCCTCCAGACTTAGTCTAGGGTTAGACCTGTACTCATCGATGTaGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTCT +
Preference number: 2 (lower is better)
Translates to: QSSRLSLGLDLYSSM*LAPDNSSRPCQLVS
Trigger: AGACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGTACAGGTCTAACCCTAGACTAAGTCTGGAGGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp CAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGCAGGTGTCTGCTGTGCACATaGGTGTGCCCAGGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: QAQREPVILALFIAYSRRCLLCT*VCPGRG
Trigger: CCCCCTCCCTGGGCACACTCATGTGCACAGCAGACA...CCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR-3UTR GCA 90 bp ACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTGTGGTGACTGTTCAGCAGTaGAAAGGCTCTGTAGACAGC +
Preference number: 2 (lower is better)
Translates to: TAFVLFLHSRGHPSVSSVVTVQQ*KGSVDS
Trigger: GCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCAC...CACACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
3UTR-3UTR GCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCGTTGGTCTGTTCAGATaGAGGGTTTGGAGGTTGACT +
Preference number: 2 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLVGLFR*RVWRLT
Trigger: AGTCAACCTCCAAACCCTGCATCTGAACAGACCAAC...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCTTGTTTGGATCAGGGTaGCTGTTCAGCAGTGCAAAG +
Preference number: 2 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGLFGSG*LFSSAK
Trigger: CTTTGCACTGCTGAACAGTCACCCTGATCCAAACAA...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTAGCGCTCAGCAGAGGTaGCCAGGAAGTCACCACCTT +
Preference number: 2 (lower is better)
Translates to: SRFGSHSFVSLCPILANISAQQR*PGSHHL
Trigger: AAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCT...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTAACTCCTCCAGGCCTTaGCAGCTGGTGTCTGAAGTA +
Preference number: 2 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCNSSRP*QLVSEV
Trigger: TACTTCAGACACCAGCTGGCAAGGCCTGGAGGAGTT...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGAACTCCTCCAGGCCTTaGCAGCTGGTGTCTGAAGTA +
Preference number: 2 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQNSSRP*QLVSEV
Trigger: TACTTCAGACACCAGCTGGCAAGGCCTGGAGGAGTT...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGTCCTCCCATCCTATCTaGTTCTCAGTTTTTCTCCAG +
Preference number: 2 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRSSHPI*FSVFLQ
Trigger: CTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGA...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp ACAGAAATGCCAGCCAGAACTGTGATCCTTCCTCATATGGCATCACAGTCAGTGTCCCACTTAGTCCCATaGAGCCTCTCTGCCCAACGG +
Preference number: 2 (lower is better)
Translates to: TEMPARTVILPHMASQSVSHLVP*SLSAQR
Trigger: CCGTTGGGCAGAGAGGCTGCATGGGACTAAGTGGGA...CACTGACTGTGATGCCATATGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCCCCATTTGCTTTGTTTaGATCAGGGTGACTGTTCAG +
Preference number: 2 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLPICFV*IRVTVQ
Trigger: CTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 90 bp CCAGGAAGTCACCACCTTGTGTGGTTGGAGTCCCATTTGCTTTGTTaGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAG +
Preference number: 2 (lower is better)
Translates to: PGSHHLVWLESHLLC*DQGDCSAVQRLCRQ
Trigger: CTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp CACCTCCTCCACCAACCTCCCGGGCCATTGGGTCACATGCTTCCCTTTAGAAGCTTTTGCCACCAAAACTaGCTAATGACTGTTCACATG +
Preference number: 2 (lower is better)
Translates to: HLLHQPPGPLGHMLPFRSFCHQN*LMTVHM
Trigger: CATGTGAACAGTCATTAGTCAGTTTTGGTGGCAAAA...GCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACGGTTTGGAGGTTGACTaGCAAGGTCAAAGGAGGTGT +
Preference number: 2 (lower is better)
Translates to: PSRFGSHSFVSLCPILANGLEVD*QGQRRC
Trigger: ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACC...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 90 bp TTACGCTCACTGATGAAACGGAGAAAGACTGAAGGAAAACAGCCTTaGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTG +
Preference number: 2 (lower is better)
Translates to: LRSLMKRRKTEGKQP*SCSFIQEGTRASAV
Trigger: CACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCTCCGTTTCATCAGTGAGCGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR-3UTR TCA 90 bp AAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGGAGCAGGGTTTGGAGGTTaGCTGGCAAGGTCAAAGGAG +
Preference number: 2 (lower is better)
Translates to: KRTQLIFKSILLCLHILGAGFGG*LARSKE
Trigger: CTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGC...TCCCAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp TCCAGTTGTATGACCTTCTTCATGTGGGAGAGAAGGATGAGGGCTCTTAAGGGGGGTCGATGCATTGATTaGCAGCAGAATGAAGGGCCA +
Preference number: 2 (lower is better)
Translates to: SSCMTFFMWERRMRALKGGRCID*QQNEGP
Trigger: TGGCCCTTCATTCTGCTGTCAATCAATGCATCGACC...CCCCTTAAGAGCCCTCATCCTTCTCTCCCACATGAAGAAGGTCATACAACTGGA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR GCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGGGTTGGAGTCCCATTTaGTTTGTTTGGATCAGGGTG +
Preference number: 2 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQGWSPI*FVWIRV
Trigger: CACCCTGATCCAAACAAAGCAAATGGGACTCCAACC...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 90 bp ATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGGAACATTTTaGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGG +
Preference number: 2 (lower is better)
Translates to: IFKSILLCLHILGTF*LVLTGELMPKMRLG
Trigger: CCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACACCACCTTGTGTGGTTaGAGTCCCATTTGCTTTGTT +
Preference number: 2 (lower is better)
Translates to: PSRFGSHSFVSLCPILANTTLCG*SPICFV
Trigger: AACAAAGCAAATGGGACTCCAACCACACAAGGTGGT...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 90 bp TCATATGGCATCACAGTCAGTGTTTATGCCTTTGACACAGGATTGTaGGCATCACAAGGCACCCTTATCATACCTCTCACCTCCTCCACC +
Preference number: 2 (lower is better)
Translates to: SYGITVSVYAFDTGL*ASQGTLIIPLTSST
Trigger: GGTGGAGGAGGTGAGAGGTATGATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGATGCCATATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CAA 90 bp TCCTCATATGGCATCACAGTCAGTGTTTATGCCTTTGACACAGGATaGTTGGCATCACAAGGCACCCTTATCATACCTCTCACCTCCTCC +
Preference number: 2 (lower is better)
Translates to: SSYGITVSVYAFDTG*LASQGTLIIPLTSS
Trigger: GGAGGAGGTGAGAGGTATGATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGATGCCATATGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR TCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTAGCAGGGTTTGGAGGTTaGCTGGCAAGGTCAAAGGAG +
Preference number: 2 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVAGFGG*LARSKE
Trigger: CTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGC...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTGTTGGTGCTGACTGGTaGGCTGATGCCCAAGATGAG +
Preference number: 2 (lower is better)
Translates to: QQDLVKLKETLKSLNEVIVGADW*ADAQDE
Trigger: CTCATCTTGGGCATCAGCTCACCAGTCAGCACCAAC...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
3UTR-3UTR GCA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTGGTTGGAGTCCCATTTaGTTTGTTTGGATCAGGGTG +
Preference number: 2 (lower is better)
Translates to: SRFGSHSFVSLCPILANIGWSPI*FVWIRV
Trigger: CACCCTGATCCAAACAAAGCAAATGGGACTCCAACC...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp AAGGCTTTCAGGATGAGGGCTATGTATGAAGTTTCATGTATTCACTCAGTTCCGGCAAGCAAACAGGCATaGGCATGCGCAGGAGAGAGT +
Preference number: 2 (lower is better)
Translates to: KAFRMRAMYEVSCIHSVPASKQA*ACAGES
Trigger: ACTCTCTCCTGCGCATGCGCATGCCTGTTTGCTTGC...CGGAACTGAGTGAATACATGAAACTTCATACATAGCCCTCATCCTGAAAGCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGTTCAGATGCAGGGTTTaGAGGTTGACTGGCAAGGTC +
Preference number: 2 (lower is better)
Translates to: DKRTQLIFKSILLCLHILFRCRV*RLTGKV
Trigger: GACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAA...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp AAACGGAGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGAACTCCTCCAGGCCTTaGCAGCTGGTGTCTGAAGTA +
Preference number: 2 (lower is better)
Translates to: KRRKTEGKQPLSCSFIQENSSRP*QLVSEV
Trigger: TACTTCAGACACCAGCTGGCAAGGCCTGGAGGAGTT...CTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCTCCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
3UTR-3UTR GCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGTTGGAGTCCCATTTaGTTTGTTTGGATCAGGGTG +
Preference number: 2 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTGWSPI*FVWIRV
Trigger: CACCCTGATCCAAACAAAGCAAATGGGACTCCAACC...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR GCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCAGTTGGTCTGTTCAGATaGAGGGTTTGGAGGTTGACT +
Preference number: 2 (lower is better)
Translates to: KLHYAGREDMLTDSPGASVGLFR*RVWRLT
Trigger: AGTCAACCTCCAAACCCTGCATCTGAACAGACCAAC...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 90 bp ACTGTGATCCTTCCTCATATGGCATCACAGTCAGTGTTTATGCCTTaGACACAGGATTGTTGGCATCACAAGGCACCCTTATCATACCTC +
Preference number: 2 (lower is better)
Translates to: TVILPHMASQSVFMP*TQDCWHHKAPLSYL
Trigger: GAGGTATGATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGATGCCATATGAGGAAGGATCACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACCCATTTGCTTTGTTTaGATCAGGGTGACTGTTCAG +
Preference number: 2 (lower is better)
Translates to: KLHYAGREDMLTDSPGASPICFV*IRVTVQ
Trigger: CTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CCA 90 bp TGTTCATGTACAAAGGGAAACAGAAATGCCAGCCAGAACTGTGATCCTTCCTCATGGCATCAGGCAAGGTaGCAGAGAGACAGAAAACAA +
Preference number: 2 (lower is better)
Translates to: CSCTKGNRNASQNCDPSSWHQAR*QRDRKQ
Trigger: TTGTTTTCTGTCTCTCTGCCACCTTGCCTGATGCCA...TGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGTTTCCCTTTGTACATGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR TCA 90 bp CAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGCAGGACAAGAGGACGCAATTaGTCTTCAAAAGCATCCTTC +
Preference number: 2 (lower is better)
Translates to: QAQREPVILALFIAYSRRTRGRN*SSKASF
Trigger: GAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGT...CCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
3UTR CAA 90 bp CAGTGTGAGCGTCTATCTAGCAAGCACAGAGAGAGCCGGTCATTCTaGCTTTATTTATTGCTTATTCCCGCAGGATTTATTTCTTACCAC +
Preference number: 2 (lower is better)
Translates to: QCERLSSKHRESRSF*LYLLLIPAGFISYH
Trigger: GTGGTAAGAAATAAATCCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATAGACGCTCACACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR CAA 90 bp CAAAACCACCATCGAGCTAAACAACAACAGCAAGACCTTGTGAAGTaGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTCTTCGACTG +
Preference number: 2 (lower is better)
Translates to: QNHHRAKQQQQDLVK*KETLKSLNEVILRL
Trigger: CAGTCGAAGAATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTGTTGTTGTTTAGCTCGATGGTGGTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR-3UTR GCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTCCTGCACTACAGAGCTaGCATTGGCTGCTCAGAAGC +
Preference number: 2 (lower is better)
Translates to: ASFLQVALHPVFCLLTNAPALQS*HWLLRS
Trigger: GCTTCTGAGCAGCCAATGGCAGCTCTGTAGTGCAGG...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CCA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTCCCATTTGCTTTGTTTaGATCAGGGTGACTGTTCAG +
Preference number: 2 (lower is better)
Translates to: QQDLVKLKETLKSLNEVIPICFV*IRVTVQ
Trigger: CTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
3UTR-3UTR CCA 90 bp AGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCGTAAAATACATGCAATaGTTCCTGGGAAAAGCGTAC +
Preference number: 2 (lower is better)
Translates to: RKTEGKQPLSCSFIQEGTVKYMQ*FLGKAY
Trigger: GTACGCTTTTCCCAGGAACCATTGCATGTATTTTAC...GGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR-3UTR TCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTAAATAGCAAGTTACAATaGGTCTGTGTGAGCATTGCC +
Preference number: 2 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVNSKLQ*VCVSIA
Trigger: GGCAATGCTCACACAGACTCATTGTAACTTGCTATT...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR-3UTR CCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTAGGAAAACAGCAGTaGACAATCAGTGGACAAGCT +
Preference number: 2 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSVGKQQ*TISGQA
Trigger: AGCTTGTCCACTGATTGTCCACTGCTGTTTTCCTAC...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR GCA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCCAACATTGTGAGCCATaGCTTTCTGCTAATCAAGTT +
Preference number: 2 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPQHCEP*LSANQV
Trigger: AACTTGATTAGCAGAAAGGCATGGCTCACAATGTTG...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR-3UTR CCA 90 bp AAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGGACAAATGATTCACTTCTaGAATGTCATTATCCCATTC +
Preference number: 2 (lower is better)
Translates to: KRTQLIFKSILLCLHILGQMIHF*NVIIPF
Trigger: GAATGGGATAATGACATTCCAGAAGTGAATCATTTG...TCCCAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAATTGTTTGGATCAGGGTaGCTGTTCAGCAGTGCAAAG +
Preference number: 2 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKLFGSG*LFSSAK
Trigger: CTTTGCACTGCTGAACAGTCACCCTGATCCAAACAA...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR TCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGATGAGGGCTATGTATaGAGTTTCATGTATTCACTC +
Preference number: 2 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSDEGYV*SFMYSL
Trigger: GAGTGAATACATGAAACTTCATACATAGCCCTCATC...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTTCGTTGACTGGAGTCTaGACACACCAAAGCATCAAT +
Preference number: 2 (lower is better)
Translates to: ASFLQVALHPVFCLLTNASLTGV*THQSIN
Trigger: ATTGATGCTTTGGTGTGTCCAGACTCCAGTCAACGA...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR GCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTTTAGAAGCAGCTCATTaGTTTAGAGATGCTAAATGG +
Preference number: 2 (lower is better)
Translates to: ASFLQVALHPVFCLLTNALEAAH*FRDAKW
Trigger: CCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAA...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 72 bp AAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTaGCCAGGAAGTCACCACCTTGTGTGGTTGGAGTCC +
Preference number: 3 (lower is better)
Translates to: KPSLLAPSAQQR*PGSHHLVWLES
Trigger: GGACTCCAACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 72 bp ATTCTGGGAACTTCCGGTCTGACCCGGAACACCCTGTaGTTAACCTCTGGCACCCTCTCTCTGTCCCCTCAC +
Preference number: 3 (lower is better)
Translates to: ILGTSGLTRNTL*LTSGTLSLSPH
Trigger: GTGAGGGGACAGAGAGAGGGTGCCAGAGGTTAAGCACAGGGTGTTCCGGGTCAGACCGGAAGTTCCCAGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 72 bp TCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCTaGAGTGAAGAGGCTGCTCCACACGGGACACATCGA +
Preference number: 3 (lower is better)
Translates to: SAPSWPTFSPCG*SEEAAPHGTHR
Trigger: TCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCGTTCAGATGCAGGGTTaGGAGGTTGACTGGCAAGGT +
Preference number: 3 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLVQMQG*EVDWQG
Trigger: ACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAAC...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 72 bp CCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATaGATTCCTTGCTTTAAAACCGCAAGCAAACAGGCA +
Preference number: 3 (lower is better)
Translates to: PAAPEATPTFRS*IPCFKTASKQA
Trigger: TGCCTGTTTGCTTGCGGTTTTAAAGCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 72 bp GGAAGAGGCATCAAACCCAGTGTGGATGGAGGTTCGTaGCCTAGAGAATTCAGTGAACAGGACCAGGCAGCC +
Preference number: 3 (lower is better)
Translates to: GRGIKPSVDGGS*PREFSEQDQAA
Trigger: GGCTGCCTGGTCCTGTTCACTGAATTCTCTAGGCCACGAACCTCCATCCACACTGGGTTTGATGCCTCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CAA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTAGCTCTGTCATACCATaGCCACTGACGACGTCACCT +
Preference number: 3 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFSSVIP*PLTTSP
Trigger: AGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCT...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 72 bp AGGTGTTTCCCCAACCACATGACTTGGGTCTTCACCTaGTTCTGCAGAAGCCATCTCTGCTGGCACCAAGCG +
Preference number: 3 (lower is better)
Translates to: RCFPNHMTWVFT*FCRSHLCWHQA
Trigger: CGCTTGGTGCCAGCAGAGATGGCTTCTGCAGAATCAGGTGAAGACCCAAGTCATGTGGTTGGGGAAACACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 72 bp CCACATCCTGGGAACATTTTTGTTGGTGCTGACTGGTaGGCTGATGCCCAAGATGAGACTGGGGCAGCAGCT +
Preference number: 3 (lower is better)
Translates to: PHPGNIFVGADW*ADAQDETGAAA
Trigger: AGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAGGATGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCATCCCATTTGCTTTGTTaGGATCAGGGTGACTGTTCA +
Preference number: 3 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPSHLLC*DQGDCS
Trigger: TGAACAGTCACCCTGATCCAAACAAAGCAAATGGGA...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 72 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTaGCCCATCTTGGCCAACATTCTCTCCGTGTGGCTG +
Preference number: 3 (lower is better)
Translates to: PSRFGSHSFVSL*PILANILSVWL
Trigger: CAGCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 72 bp TGCATTCCTTGCTTTAAAACCGCAAGCAAACAGGCATaGGCATGCGCAGGAGAGAGTCCATGCTCAGAGGCA +
Preference number: 3 (lower is better)
Translates to: CIPCFKTASKQA*ACAGESPCSEA
Trigger: TGCCTCTGAGCATGGACTCTCTCCTGCGCATGCGCATGCCTGTTTGCTTGCGGTTTTAAAGCAAGGAATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR GCA 72 bp ACCTCCTCCACCAACCTCCCGGGCCATTGGGTCACATaGTTCCCTTTAGAAGCAGCTCATTGCTTTAGAGAT +
Preference number: 3 (lower is better)
Translates to: TSSTNLPGHWVT*FPLEAAHCFRD
Trigger: ATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 72 bp CGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTaGCAAGGTCAAAGGAGGTGTTTCCCCAACCACATG +
Preference number: 3 (lower is better)
Translates to: RWSVQMQGLEVD*QGQRRCFPNHM
Trigger: CATGTGGTTGGGGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 72 bp TTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTaGCCAACATTCTCTCCGTGTGGCTGGAGTGAAGAG +
Preference number: 3 (lower is better)
Translates to: LVATPLYHSAPS*PTFSPCGWSEE
Trigger: CTCTTCACTCCAGCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACCTGGGAACATTTTTGTaGGTGCTGACTGGTGAGCTG +
Preference number: 3 (lower is better)
Translates to: PSRFGSHSFVSLCPILANLGTFL*VLTGEL
Trigger: CAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAG...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 72 bp GTCATACCATTGCCACTGACGACGTCACCTTCAGGATaGTGCAGCTCCTCCCATCCTATCTGCTTCTCAGTT +
Preference number: 3 (lower is better)
Translates to: VIPLPLTTSPSG*CSSSHPICFSV
Trigger: AACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAAGGTGACGTCGTCAGTGGCAATGGTATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 72 bp CAGGAAGTCACCACCTTGTGTGGTTGGAGTCCCATTTaGTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGC +
Preference number: 3 (lower is better)
Translates to: QEVTTLCGWSPI*FVWIRVTVQQC
Trigger: GCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 72 bp AGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTaGAGTCCCATTTGCTTTGTTTGGATCAGGGTGACT +
Preference number: 3 (lower is better)
Translates to: SRGDQEVTTLCG*SPICFVWIRVT
Trigger: AGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGTGCAGGGTTTGGAGGTaGACTGGCAAGGTCAAAGGA +
Preference number: 3 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVCRVWR*TGKVKG
Trigger: TCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCA...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTTGCAGGGTTTGGAGGTaGACTGGCAAGGTCAAAGGA +
Preference number: 3 (lower is better)
Translates to: SRFGSHSFVSLCPILANICRVWR*TGKVKG
Trigger: TCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCA...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTAGGCAGAGAAGATATGTaGACAGACTCACCAGGGGCA +
Preference number: 3 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLGREDM*TDSPGA
Trigger: TGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCC...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR TCA 72 bp TTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTaGCTGGCAAGGTCAAAGGAGGTGTTTCCCCAACCA +
Preference number: 3 (lower is better)
Translates to: LTLVCSDAGFGG*LARSKEVFPQP
Trigger: TGGTTGGGGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 72 bp TCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTaGAGGTTGACTGGCAAGGTCAAAGGAGGTGTTTCC +
Preference number: 3 (lower is better)
Translates to: SGLNVGLFRCRV*RLTGKVKGGVS
Trigger: GGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR TCA 72 bp GACCTCTTCTTGGACATCACAGCACGGCAGCAGAAGTaGTGTTCATGTACAAAGGGAAACAGAAATGCCAGC +
Preference number: 3 (lower is better)
Translates to: DLFLDITARQQK*CSCTKGNRNAS
Trigger: GCTGGCATTTCTGTTTCCCTTTGTACATGAACATCACTTCTGCTGCCGTGCTGTGATGTCCAAGAAGAGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 72 bp CATTGCTTTAGAGATGCTAAATGGCATCAGGCAAGGTaGCAGAGAGACAGAAAACAAAGCCGGGATAGTGGG +
Preference number: 3 (lower is better)
Translates to: HCFRDAKWHQAR*QRDRKQSRDSG
Trigger: CCCACTATCCCGGCTTTGTTTTCTGTCTCTCTGCCACCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CAA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACTGGGAACATTTTTGTaGGTGCTGACTGGTGAGCTG +
Preference number: 3 (lower is better)
Translates to: KLHYAGREDMLTDSPGASLGTFL*VLTGEL
Trigger: CAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCTCACTCTGCCCCATCTaGGCCAACATTCTCTCCGTG +
Preference number: 3 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPSLCPI*ANILSV
Trigger: CACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGA...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
3UTR-3UTR CAA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTATCACTCTGCCCCATCTaGGCCAACATTCTCTCCGTG +
Preference number: 3 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVSLCPI*ANILSV
Trigger: CACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGA...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTACACTGCCTTCGAGATTaGGTAGCCACTCCTTTGTAT +
Preference number: 3 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLHCLRD*VATPLY
Trigger: ATACAAAGGAGTGGCTACCAAATCTCGAAGGCAGTG...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGTCCCATTTGCTTTGTTaGGATCAGGGTGACTGTTCA +
Preference number: 3 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVSHLLC*DQGDCS
Trigger: TGAACAGTCACCCTGATCCAAACAAAGCAAATGGGA...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR-3UTR CAA 90 bp TTCCCTTTAGAAGCAGCTCATTGCTTTAGAGATGCTAAATGGCATCAGGCAAGGGTGGGGGTCGATGCATaGATTGACAGCAGAATGAAG +
Preference number: 3 (lower is better)
Translates to: FPLEAAHCFRDAKWHQARVGVDA*IDSRMK
Trigger: CTTCATTCTGCTGTCAATCAATGCATCGACCCCCAC...CCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 72 bp CTTCTTGGTAGAATAGCAAGTTACAATGAGTCTGTGTaGGCATTGCCCACACACGTGCACATGAGTGTCTGC +
Preference number: 3 (lower is better)
Translates to: LLGRIASYNESV*ALPTHVHMSVC
Trigger: GCAGACACTCATGTGCACGTGTGTGGGCAATGCTCACACAGACTCATTGTAACTTGCTATTCTACCAAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR TCA 72 bp AATGGTTCCTGGGAAAAGCGTACGCTAAACAATATGTaGTCCATACTGTGTGTCCTTGCCGGGGGTCTATTC +
Preference number: 3 (lower is better)
Translates to: NGSWEKRTLNNM*SILCVLAGGLF
Trigger: GAATAGACCCCCGGCAAGGACACACAGTATGGATCACATATTGTTTAGCGTACGCTTTTCCCAGGAACCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR GCA 72 bp ATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTaGAAAGGCTCTGTAGACAGCCCTCAGGTAGTTAGT +
Preference number: 3 (lower is better)
Translates to: ICFVWIRVTVQQ*KGSVDSPQVVS
Trigger: ACTAACTACCTGAGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR GCA 72 bp AGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATaGAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGA +
Preference number: 3 (lower is better)
Translates to: SFLSGLNVGLFR*RVWRLTGKVKG
Trigger: TCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CCA 72 bp TTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTaGAGTCTGGACACACCAAAGCATCAATGTCCCTTT +
Preference number: 3 (lower is better)
Translates to: FDRKWHLSELVD*SLDTPKHQCPF
Trigger: AAAGGGACATTGATGCTTTGGTGTGTCCAGACTCCAGTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR GCA 72 bp TACGCTAAACAATATGTGATCCATACTGTGTGTCCTTaGCGGGGGTCTATTCCTTTGTCCTTCCTAGGACAA +
Preference number: 3 (lower is better)
Translates to: YAKQYVIHTVCP*RGSIPLSFLGQ
Trigger: TTGTCCTAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATATTGTTTAGCGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
3UTR GCA 72 bp TTGGCAGCCTGGCATTACCATGGAGATGAACAACTATaGCACCAACAACCATCTTCACCAATAGCTATTGCT +
Preference number: 3 (lower is better)
Translates to: LAAWHYHGDEQL*HQQPSSPIAIA
Trigger: AGCAATAGCTATTGGTGAAGATGGTTGTTGGTGGCATAGTTGTTCATCTCCATGGTAATGCCAGGCTGCCAA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 72 bp TCACAGTCAGTGTTTATGCCTTTGACACAGGATTGTTaGCATCACAAGGCACCCTTATCATACCTCTCACCT +
Preference number: 3 (lower is better)
Translates to: SQSVFMPLTQDC*HHKAPLSYLSP
Trigger: AGGTGAGAGGTATGATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 72 bp TTCCTCATATGGCATCACAGTCAGTGTTTATGCCTTTaGCACAGGATTGTTGGCATCACAAGGCACCCTTAT +
Preference number: 3 (lower is better)
Translates to: FLIWHHSQCLCL*HRIVGITRHPY
Trigger: ATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGATGCCATATGAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CCA 72 bp AGGACCATAAATATGCTTACTCTGTCACTCAGCAGATaGCATCCGCATCTGAGAAATGGCTGGTTAGGTTTA +
Preference number: 3 (lower is better)
Translates to: RTINMLTLSLSR*HPHLRNGWLGL
Trigger: TAAACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAGCATATTTATGGTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR CCA 72 bp CCTTTAGAAGCAGCTCATTGCTTTAGAGATGCTAAATaGCATCAGGCAAGGTGGCAGAGAGACAGAAAACAA +
Preference number: 3 (lower is better)
Translates to: PLEAAHCFRDAK*HQARWQRDRKQ
Trigger: TTGTTTTCTGTCTCTCTGCCACCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 72 bp CCAATGTTTACGCTCACTGATGAAACGGAGAAAGACTaGAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCA +
Preference number: 3 (lower is better)
Translates to: PMFTLTDETEKD*RKTAFVLFLHS
Trigger: TGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCTCCGTTTCATCAGTGAGCGTAAACATTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR TCA 72 bp ATGTACAAAGGGAAACAGAAATGCCAGCCAGAACTGTaGTCCTTCCTCATATGGCATCACAGTCAGTGTTTA +
Preference number: 3 (lower is better)
Translates to: MYKGKQKCQPEL*SFLIWHHSQCL
Trigger: TAAACACTGACTGTGATGCCATATGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGTTTCCCTTTGTACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 72 bp CCTATACCATGCCACGTTCTTTTCCTTTTGTTTCTCTaGGAAGGTATCAGTGTGGATAGTGCCAAACAATTC +
Preference number: 3 (lower is better)
Translates to: PIPCHVLFLLFL*EGISVDSAKQF
Trigger: GAATTGTTTGGCACTATCCACACTGATACCTTCTCAGAGAAACAAAAGGAAAAGAACGTGGCATGGTATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR GCA 72 bp AGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTaGTTATTCCCGCAGGATTTATTTCTTACCACCAAC +
Preference number: 3 (lower is better)
Translates to: STERAGHSCFIY*LFPQDLFLTTN
Trigger: GTTGGTGGTAAGAAATAAATCCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR GCA 72 bp AGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATaGTGTCACTCCCTGAACCTTGTTACACAGCAAGAC +
Preference number: 3 (lower is better)
Translates to: SCFASCILFTNK*CHSLNLVTQQD
Trigger: GTCTTGCTGTGTAACAAGGTTCAGGGAGTGACAGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR-3UTR CAA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTAAGTTAGCCTCTGTTTaGGTGCACTTAAACTTTCCA +
Preference number: 3 (lower is better)
Translates to: QQDLVKLKETLKSLNEVIKLASV*VHLNFP
Trigger: TGGAAAGTTTAAGTGCACCAAAACAGAGGCTAACTT...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR GCA 72 bp GTCTATCTAGCAAGCACAGAGAGAGCCGGTCATTCTTaGTTTATTTATTGCTTATTCCCGCAGGATTTATTT +
Preference number: 3 (lower is better)
Translates to: VYLASTERAGHS*FIYCLFPQDLF
Trigger: AAATAAATCCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
3UTR GCA 72 bp CTGTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTaGTTTGCATCCTGTATTCTGTTTACTAACAAATGC +
Preference number: 3 (lower is better)
Translates to: LFPLIDCFIFAS*FASCILFTNKC
Trigger: GCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR TCA 72 bp CTAATGACTGTTCACATGGAAATTCTTTGTTCCCTCTaGCTTAGGCCTCATAGTGCTATCAAAATTTTCCTT +
Preference number: 3 (lower is better)
Translates to: LMTVHMEILCSL*LRPHSAIKIFL
Trigger: AAGGAAAATTTTGATAGCACTATGAGGCCTAAGTCAGAGGGAACAAAGAATTTCCATGTGAACAGTCATTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACCAGCCTGGTGGCCAATaGAGCCCTGGTGACCCTCAT +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHQPGGQ*SPGDPH
Trigger: ATGAGGGTCACCAGGGCTTCATTGGCCACCAGGCTG...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCCCGAGGCTCGTGCATTaGCTGCCACGAGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLPRLVH*LPRGRR
Trigger: TCGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGG...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACGTGTCCTCGATGCACTaGCAGTTCTGCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHVSSMH*QFCPGC
Trigger: GCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACAC...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGCTTCCACGCTCTGGCTaGCTGGTACAGCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRLPRSG*LVQLPL
Trigger: GAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAG...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTATGCACTGCCAGTTCTaGCCAGGCTGCTCACAGGCT +
Preference number: 4 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVMHCQF*PGCSQA
Trigger: AGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCAT...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GTTCGTGGCCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACAGTGTCCTCGATGCACTaGCAGTTCTGCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: VRGLENSVNRTRQPTCTTVSSMH*QFCPGC
Trigger: GCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACAC...TGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGGCCACGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAGTCTTCAGGGCCATGTaGTGCTGCATGGCTGATCAC +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPVFRAM*CCMADH
Trigger: GTGATCAGCCATGCAGCACCACATGGCCCTGAAGAC...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTTCACCAGCAGCAGCCTaGTGGCCAATGAAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCSPAAA*WPMKPW
Trigger: CCAGGGCTTCATTGGCCACCAGGCTGCTGCTGGTGA...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTGGTCCTTCCACGCTCTaGCTGACTGGTACAGCTCCC +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCGPSTL*LTGTAP
Trigger: GGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACC...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCGGTCCTTCCACGCTCTaGCTGACTGGTACAGCTCCC +
Preference number: 4 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGGPSTL*LTGTAP
Trigger: GGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACC...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAGGGGCAGTCTGCCAGTaGTTGTTGTCATGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPGAVCQ*LLSWVK
Trigger: CTTCACCCATGACAACAACCACTGGCAGACTGCCCC...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp GTCCATGCTCAGAGGCATCTCGTGGGGGTCGATGCATaGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: VHAQRHLVGVDA*IDSRMKGQEPG
Trigger: CCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATCGACCCCCACGAGATGCCTCTGAGCATGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTCCAACATCTCATTCCTaGTGTCACCAGCAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVPTSHS*CHQQQP
Trigger: AGGCTGCTGCTGGTGACATCAGGAATGAGATGTTGG...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACCCGAGGCTCGTGCATTaGCTGCCACGAGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANPRLVH*LPRGRR
Trigger: TCGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGG...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACAGGGCCATGTGGTGCTaGATGGCTGATCACCATCAT +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHRAMWC*MADHHH
Trigger: ATGATGGTGATCAGCCATGCAGCACCACATGGCCCT...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAAGAGTAGAGGTTGCGTaGATTCTGACGGACCGTGAG +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPRVEVA*ILTDRE
Trigger: CTCACGGTCCGTCAGAATGCACGCAACCTCTACTCT...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CACCTCCTCCACCAACCTCCCGGGCCATTGGGTCACATGCTTCCCTTTAGAAGCCGAGTCTGCCGGGTGTaGACAAATCTGGGCTTATAC +
Preference number: 4 (lower is better)
Translates to: HLLHQPPGPLGHMLPFRSRVCRV*TNLGLY
Trigger: GTATAAGCCCAGATTTGTGCACACCCGGCAGACTCG...GCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp AAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCTTGCGTCTTCAGGGCCATGTaGTGCTGCATGGCTGATCAC +
Preference number: 4 (lower is better)
Translates to: KIPAAPEATPTFRSCIPCVFRAM*CCMADH
Trigger: GTGATCAGCCATGCAGCACCACATGGCCCTGAAGAC...GCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTCATCATGGCGCTTaGCAATGCTCCTTGGTGGTA +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPPHHGA*QCSLVV
Trigger: TACCACCAAGGAGCATTGCCAAGCGCCATGATGAGG...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTCACGCTCTGGCTGACTaGTACAGCTCCCTCTCACAG +
Preference number: 4 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFHALAD*YSSLSQ
Trigger: CTGTGAGAGGGAGCTGTACCAGTCAGCCAGAGCGTG...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCCACGCTCTGGCTGACTaGTACAGCTCCCTCTCACAG +
Preference number: 4 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGHALAD*YSSLSQ
Trigger: CTGTGAGAGGGAGCTGTACCAGTCAGCCAGAGCGTG...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGTTGCTATCCACCTCCTaGGCAGCAGCCTCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRLLSTS*AAASLK
Trigger: CTTCAAGGAGGCTGCTGCCCAGGAGGTGGATAGCAA...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACTGTAGCCGGTGTTGTTaGGATACACAGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHCSRCC*DTQQRS
Trigger: GGACCTTTGCTGTGTATCTCAACAACACCGGCTACA...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTTGTAGCCGGTGTTGTTaGGATACACAGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVCSRCC*DTQQRS
Trigger: GGACCTTTGCTGTGTATCTCAACAACACCGGCTACA...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGGCTGGCACAGTTCCTTaGCCCTCTCATATTTGGGCA +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRAGTVP*PSHIWA
Trigger: TGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGC...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GAAGGAAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCCAACATCTCATTCCTaGTGTCACCAGCAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: EGKSLLPQRPLPLSGHAFPTSHS*CHQQQP
Trigger: AGGCTGCTGCTGGTGACATCAGGAATGAGATGTTGG...GAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTTCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCATGCTCCTTGAAGAGCTaGAGTTTGCTATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPCSLKS*SLLSTS
Trigger: GGAGGTGGATAGCAAACTTCAGCTCTTCAAGGAGCA...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGCTGCCCGAGGCTCGTGCATTaGCTGCCACGAGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: HAASLPNGVNKMKENPCCPRLVH*LPRGRR
Trigger: TCGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGG...GCAGCAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGAGGGCCATGTGGTGCTaGATGGCTGATCACCATCAT +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRRAMWC*MADHHH
Trigger: ATGATGGTGATCAGCCATGCAGCACCACATGGCCCT...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGTTCAGGGCCATGTGGTaGTGCATGGCTGATCACCAT +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRFRAMW*CMADHH
Trigger: ATGGTGATCAGCCATGCAGCACCACATGGCCCTGAA...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACAGAGCTGCCTTCAGGGCCATGTGGTaGTGCATGGCTGATCACCAT +
Preference number: 4 (lower is better)
Translates to: PREFSEQDQAADLHYRAAFRAMW*CMADHH
Trigger: ATGGTGATCAGCCATGCAGCACCACATGGCCCTGAA...GGCAGCTCTGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCGTCTGGTATCTGGCTTaGTGGCACAGTTCCTTGACC +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLVWYLA*WHSSLT
Trigger: GGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGAC...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGCAGAATGGGGCAGTCTaGCAGTGGTTGTTGTCATGG +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRQNGAV*QWLLSW
Trigger: CCATGACAACAACCACTGGCAGACTGCCCCATTCTG...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACTGGGTGTTATGTGTTaGGAGGCATTGGGGTACAGT +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPLGVMC*EALGYS
Trigger: ACTGTACCCCAATGCCTCCCAACACATAACACCCAG...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CACCTCCTCCACCAACCTCCCGGGCCATTGGGTCACATGCTTCCCTTTAGAAGCCTGGGTGTTATGTGTTaGGAGGCATTGGGGTACAGT +
Preference number: 4 (lower is better)
Translates to: HLLHQPPGPLGHMLPFRSLGVMC*EALGYS
Trigger: ACTGTACCCCAATGCCTCCCAACACATAACACCCAG...GCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGTGGTATCTGGCTTGCTaGCACAGTTCCTTGACCCTC +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRWYLAC*HSSLTL
Trigger: GAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCA...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGAGGCTGTCTGGTATCTaGCTTGCTGGCACAGTTCCT +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRRLSGI*LAGTVP
Trigger: AGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCT...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACTCACCAGCAGCAGCCTaGTGGCCAATGAAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANSPAAA*WPMKPW
Trigger: CCAGGGCTTCATTGGCCACCAGGCTGCTGCTGGTGA...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTCAGTGGTTGTTGTCATaGGTGAAGCAGGTAAGGCCA +
Preference number: 4 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVQWLLS*VKQVRP
Trigger: TGGCCTTACCTGCTTCACCCATGACAACAACCACTG...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTGGGGCAGTCTGCCAGTaGTTGTTGTCATGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCGAVCQ*LLSWVK
Trigger: CTTCACCCATGACAACAACCACTGGCAGACTGCCCC...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCTCCCAAGTTCCAGAATaGGGCAGTCTGCCAGTGGTT +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLSQVPE*GSLPVV
Trigger: AACCACTGGCAGACTGCCCCATTCTGGAACTTGGGA...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAGGAGGGCACTGTTACAATGTCCAGGCTCTTaGGTCTTGGGTTGCACTGTT +
Preference number: 4 (lower is better)
Translates to: QQNEGPGARDSVGRRALLQCPGS*VLGCTV
Trigger: AACAGTGCAACCCAAGACCCAAGAGCCTGGACATTG...TAACAGTGCCCTCCTTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCGGTCCGCAGTGTAGATaGTGTAAGTGTTGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLGPQCR*CKCCPA
Trigger: AGCTGGACAACACTTACATCATCTACACTGCGGACC...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCTGCTTGGACCACGAATaGAGAAAGGCACACGGATGT +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLCLDHE*RKAHGC
Trigger: ACATCCGTGTGCCTTTCTTCATTCGTGGTCCAAGCA...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTACCGAGGCTCGTGCATTaGCTGCCACGAGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLPRLVH*LPRGRR
Trigger: TCGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGG...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTACCCCACAGCATTGTTaGTGTCTGCCAACATCTCAT +
Preference number: 4 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVTPQHC*CLPTSH
Trigger: ATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGT...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAGGAGGGCACTGTTACCATGTGGTGCTGCATaGCTGATCACCATCATAATG +
Preference number: 4 (lower is better)
Translates to: QQNEGPGARDSVGRRALLPCGAA*LITIIM
Trigger: CATTATGATGGTGATCAGCCATGCAGCACCACATGG...TAACAGTGCCCTCCTTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTAGGCTGTCTGGTATCTaGCTTGCTGGCACAGTTCCT +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCRLSGI*LAGTVP
Trigger: AGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCT...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTCCTCATCATGGCGCTTaGCAATGCTCCTTGGTGGTA +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCPHHGA*QCSLVV
Trigger: TACCACCAAGGAGCATTGCCAAGCGCCATGATGAGG...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TCCAGTTGTATGACCTTCTTCATGTGGGAGAGAAGGATGAGGGCTCTTAAGGGGTCACCAGCAGCAGCCTaGTGGCCAATGAAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: SSCMTFFMWERRMRALKGSPAAA*WPMKPW
Trigger: CCAGGGCTTCATTGGCCACCAGGCTGCTGCTGGTGA...CCCCTTAAGAGCCCTCATCCTTCTCTCCCACATGAAGAAGGTCATACAACTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACAGCTCCCTCTCACAGTaGATTGTGTCGTTTGGAAGA +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHSSLSQ*IVSFGR
Trigger: TCTTCCAAACGACACAATCCACTGTGAGAGGGAGCT...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAAGCTCCCTCTCACAGTaGATTGTGTCGTTTGGAAGA +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPSSLSQ*IVSFGR
Trigger: TCTTCCAAACGACACAATCCACTGTGAGAGGGAGCT...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAGGAGGGCACTGTTAAGCTCCCTCTCACAGTaGATTGTGTCGTTTGGAAGA +
Preference number: 4 (lower is better)
Translates to: QQNEGPGARDSVGRRALLSSLSQ*IVSFGR
Trigger: TCTTCCAAACGACACAATCCACTGTGAGAGGGAGCT...TAACAGTGCCCTCCTTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCCAATGTCCAGGCTCTTaGGTCTTGGGTTGCACTGTT +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLQCPGS*VLGCTV
Trigger: AACAGTGCAACCCAAGACCCAAGAGCCTGGACATTG...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTTTCTCGTCTTGTTCATaGCTTGCAGGGAACCCAGCT +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCFSSCS*LAGNPA
Trigger: AGCTGGGTTCCCTGCAAGTCATGAACAAGACGAGAA...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTTCACAAAGGCATTGGTaGAGGTGGCCCCACCCTGTT +
Preference number: 4 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCSQRHW*RWPHPV
Trigger: AACAGGGTGGGGCCACCTTCACCAATGCCTTTGTGA...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GTTCGTGGCCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACAGGTCCGCAGTGTAGATaGTGTAAGTGTTGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: VRGLENSVNRTRQPTCTTGPQCR*CKCCPA
Trigger: AGCTGGACAACACTTACATCATCTACACTGCGGACC...TGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGGCCACGAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTTGCTTGGACCACGAATaGAGAAAGGCACACGGATGT +
Preference number: 4 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFCLDHE*RKAHGC
Trigger: ACATCCGTGTGCCTTTCTTCATTCGTGGTCCAAGCA...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGCTCAGGAACTGCCTTTaGTTCTTTCTCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRLRNCL*FFLWLL
Trigger: CAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAG...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCAATTGTGCGTCTCGTTaGCTGTACGCAAACACCAGT +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLNCASR*LYANTS
Trigger: ACTGGTGTTTGCGTACAGTCAACGAGACGCACAATT...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTAAAGGTCCGAGGCTCGTaGATTGCCTGCCACGAGGGA +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLKVRGS*IACHEG
Trigger: TCCCTCGTGGCAGGCAATGCACGAGCCTCGGACCTT...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAACTGTTGGATATTCTTaGCGGATTCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPTVGYS*RIPPSS
Trigger: GGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGT...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTATGCACTGCCAGTTCTaGCCAGGCTGCTCACAGGCT +
Preference number: 4 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPMHCQF*PGCSQA
Trigger: AGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCAT...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTTCTTTCTCTGGCTTCTaGTCGAGCGATAGCCAGAGT +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCSFSGF*SSDSQS
Trigger: ACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGA...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAGGAGGGCACTGTTAGTGCATAGTTATAGCTaGGTGTTATGTGTTGGGAGG +
Preference number: 4 (lower is better)
Translates to: QQNEGPGARDSVGRRALLVHSYS*VLCVGR
Trigger: CCTCCCAACACATAACACCCAGCTATAACTATGCAC...TAACAGTGCCCTCCTTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCAGAGTCCCTACAATaGCACTCTTTGTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPPESLQ*HSLSLS
Trigger: TGACAAAGACAAAGAGTGCCATTGTAGGGACTCTGG...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTCAGTGGTTGTTGTCATaGGTGAAGCAGGTAAGGCCA +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCQWLLS*VKQVRP
Trigger: TGGCCTTACCTGCTTCACCCATGACAACAACCACTG...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp CAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTaGTGTGGTTGGAGTCCCATTTGCTTTGTTTGGATC +
Preference number: 4 (lower is better)
Translates to: QALSRGDQEVTT*CGWSPICFVWI
Trigger: GATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp CGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTaGTATCACTCTGCCCCATCTTGGCCAACATTCTCT +
Preference number: 4 (lower is better)
Translates to: RRHCLRDLVATP*YHSAPSWPTFS
Trigger: AGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGCCAGGTCTAGAAGTTTaGGGACAGATTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRPGLEV*GQIYHP
Trigger: TGGATGGTAAATCTGTCCTCAAACTTCTAGACCTGG...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCTTGCTTTGGGCAAGTGGTTTaGCTGTTGGATATTCTTGCC +
Preference number: 4 (lower is better)
Translates to: KIPAAPEATPTFRSCIPCFGQVV*LLDILA
Trigger: GGCAAGAATATCCAACAGTCAAACCACTTGCCCAAA...GCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTGCTGGCACAGTTCCTTaGCCCTCTCATATTTGGGCA +
Preference number: 4 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCAGTVP*PSHIWA
Trigger: TGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGC...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCAGCCTGGTGGCCAATaGAGCCCTGGTGACCCTCAT +
Preference number: 4 (lower is better)
Translates to: RKTEGKQPLSCSFIQEGTQPGGQ*SPGDPH
Trigger: ATGAGGGTCACCAGGGCTTCATTGGCCACCAGGCTG...GGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACCCAACATCTCATTCCTaGTGTCACCAGCAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANPTSHS*CHQQQP
Trigger: AGGCTGCTGCTGGTGACATCAGGAATGAGATGTTGG...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCAATTGTGCGTCTCGTTaGCTGTACGCAAACACCAGT +
Preference number: 4 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGNCASR*LYANTS
Trigger: ACTGGTGTTTGCGTACAGTCAACGAGACGCACAATT...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGTTCAGGGCCATGTGGTaGTGCATGGCTGATCACCAT +
Preference number: 4 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQFRAMW*CMADHH
Trigger: ATGGTGATCAGCCATGCAGCACCACATGGCCCTGAA...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACGTCTGGTATCTGGCTTaGTGGCACAGTTCCTTGACC +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANVWYLA*WHSSLT
Trigger: GGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGAC...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGTGTCCTCGATGCACTaGCAGTTCTGCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTVSSMH*QFCPGC
Trigger: GCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACAC...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACAGAGTAGAGGTTGCGTaGATTCTGACGGACCGTGAG +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANRVEVA*ILTDRE
Trigger: CTCACGGTCCGTCAGAATGCACGCAACCTCTACTCT...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTCGAGTCTGCCGGGTGTaGACAAATCTGGGCTTATAC +
Preference number: 4 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCRVCRV*TNLGLY
Trigger: GTATAAGCCCAGATTTGTGCACACCCGGCAGACTCG...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACAGCATTGTTGCTGTCTaGCAACATCTCATTCCTGAT +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHSIVAV*QHLIPD
Trigger: ATCAGGAATGAGATGTTGGCAGACAGCAACAATGCT...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTACCCCACAGCATTGTTaGTGTCTGCCAACATCTCAT +
Preference number: 4 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFTPQHC*CLPTSH
Trigger: ATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGT...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCTCTTGGGTCTTGGGTTaGACTGTTTATACCCTTGGC +
Preference number: 4 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGSWVLG*TVYTLG
Trigger: GCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGA...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGGTGATGGACAGCACATaGGCGTGGTCACAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQVMDST*AWSQRH
Trigger: ATGCCTTTGTGACCACGCCCATGTGCTGTCCATCAC...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACGTGATGGACAGCACATaGGCGTGGTCACAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANVMDST*AWSQRH
Trigger: ATGCCTTTGTGACCACGCCCATGTGCTGTCCATCAC...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGGTGCATAGTTATAGCTaGGTGTTATGTGTTGGGAGG +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRVHSYS*VLCVGR
Trigger: CCTCCCAACACATAACACCCAGCTATAACTATGCAC...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACTATCACGCCAGATTTTaGCCTTCTTGTTTGTCCGAA +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHYHARF*PSCLSE
Trigger: TTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATA...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCTTGCCCAGAGTCCCTACAATaGCACTCTTTGTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: KIPAAPEATPTFRSCIPCPESLQ*HSLSLS
Trigger: TGACAAAGACAAAGAGTGCCATTGTAGGGACTCTGG...GCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGTCACCAGCAGCAGCCTaGTGGCCAATGAAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILSPAAA*WPMKPW
Trigger: CCAGGGCTTCATTGGCCACCAGGCTGCTGCTGGTGA...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGGTCCTTCCACGCTCTaGCTGACTGGTACAGCTCCC +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILGPSTL*LTGTAP
Trigger: GGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACC...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CTTACCACCAACATTGTGAGCCATGCCTTTCTGCTAATCAAGTTTAGCACGTCGCCAATGAAGCCCTGGTaGCCCTCATCATGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: LTTNIVSHAFLLIKFSTSPMKPW*PSSWRL
Trigger: CAAGCGCCATGATGAGGGTCACCAGGGCTTCATTGG...CGACGTGCTAAACTTGATTAGCAGAAAGGCATGGCTCACAATGTTGGTGGTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACCAATGAAGCCCTGGTaGCCCTCATCATGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: KLHYAGREDMLTDSPGASPMKPW*PSSWRL
Trigger: CAAGCGCCATGATGAGGGTCACCAGGGCTTCATTGG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTCCAATGAAGCCCTGGTaGCCCTCATCATGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTPMKPW*PSSWRL
Trigger: CAAGCGCCATGATGAGGGTCACCAGGGCTTCATTGG...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TTCCCTTTAGAAGCAGCTCATTGCTTTAGAGATGCTAAATGGCATCAGGCAAGGCAGCCTGGTGGCCAATaGAGCCCTGGTGACCCTCAT +
Preference number: 4 (lower is better)
Translates to: FPLEAAHCFRDAKWHQARQPGGQ*SPGDPH
Trigger: ATGAGGGTCACCAGGGCTTCATTGGCCACCAGGCTG...CCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp CCAAACAATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACCTTCCACGCTCTGGCTaGCTGGTACAGCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: PNNSHCFDRKWHLSELVDLPRSG*LVQLPL
Trigger: GAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAG...GTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATTGTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCATGTGTACTGTATTTGTaGGCTGATAAGGATCCGTAT +
Preference number: 4 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPCVLYL*ADKDPY
Trigger: ATACGGATCCTTATCAGCTCACAAATACAGTACACA...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTGTTTGTTTGGATCAGGGTaGCTGTTCAGCAGTGCAAAG +
Preference number: 4 (lower is better)
Translates to: NSLCPVPSFKRAPERQQCLFGSG*LFSSAK
Trigger: CTTTGCACTGCTGAACAGTCACCCTGATCCAAACAA...ACACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTACTGTTGGATATTCTTaGCGGATTCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCTVGYS*RIPPSS
Trigger: GGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGT...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTCTTGGTGGTAACACTTaGAGTTCTTCTTCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: THRCCLHRITPPGLASWCLGGNT*SSSSSR
Trigger: CCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAG...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GTCCCATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGCAGAATGGGGCAGTCTaGCAGTGGTTGTTGTCATGG +
Preference number: 4 (lower is better)
Translates to: VPCSLSAQRCKQNEGKSLQNGAV*QWLLSW
Trigger: CCATGACAACAACCACTGGCAGACTGCCCCATTCTG...CAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GTCCCATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGGTGATGGACAGCACATaGGCGTGGTCACAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: VPCSLSAQRCKQNEGKSLVMDST*AWSQRH
Trigger: ATGCCTTTGTGACCACGCCCATGTGCTGTCCATCAC...CAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACATCATAATGGGCCTATaGGGATACATTCTCTTAGAC +
Preference number: 4 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHIIMGL*GYILLD
Trigger: GTCTAAGAGAATGTATCCCCATAGGCCCATTATGAT...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGGTCTTCAGGGCCATGTaGTGCTGCATGGCTGATCAC +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVVFRAM*CCMADH
Trigger: GTGATCAGCCATGCAGCACCACATGGCCCTGAAGAC...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCTGGGTGTTATGTGTTaGGAGGCATTGGGGTACAGT +
Preference number: 4 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQLGVMC*EALGYS
Trigger: ACTGTACCCCAATGCCTCCCAACACATAACACCCAG...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GAAGGAAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCTATCACGCCAGATTTTaGCCTTCTTGTTTGTCCGAA +
Preference number: 4 (lower is better)
Translates to: EGKSLLPQRPLPLSGHAFYHARF*PSCLSE
Trigger: TTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATA...GAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTTCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCAAGTGGTTTGACTGTTaGATATTCTTGCCGGATTCC +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLKWFDC*IFLPDS
Trigger: GGAATCCGGCAAGAATATCCAACAGTCAAACCACTT...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGAAGTGGTTTGACTGTTaGATATTCTTGCCGGATTCC +
Preference number: 4 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRKWFDC*IFLPDS
Trigger: GGAATCCGGCAAGAATATCCAACAGTCAAACCACTT...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTTGGTATCTGGCTTGCTaGCACAGTTCCTTGACCCTC +
Preference number: 4 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGWYLAC*HSSLTL
Trigger: GAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCA...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGTTGCTATCCACCTCCTaGGCAGCAGCCTCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVLLSTS*AAASLK
Trigger: CTTCAAGGAGGCTGCTGCCCAGGAGGTGGATAGCAA...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTCAATGTCCAGGCTCTTaGGTCTTGGGTTGCACTGTT +
Preference number: 4 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCQCPGS*VLGCTV
Trigger: AACAGTGCAACCCAAGACCCAAGAGCCTGGACATTG...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACCAATGTCCAGGCTCTTaGGTCTTGGGTTGCACTGTT +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANQCPGS*VLGCTV
Trigger: AACAGTGCAACCCAAGACCCAAGAGCCTGGACATTG...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTATTCTCTCCGTGTGGCTaGAGTGAAGAGGCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLFSPCG*SEEAAP
Trigger: TGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGAA...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
3UTR CAA 72 bp CACCACCTTGTGTGGTTGGAGTCCCATTTGCTTTGTTaGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTC +
Preference number: 4 (lower is better)
Translates to: HHLVWLESHLLC*DQGDCSAVQRL
Trigger: GAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp CCAGGAAGTCACCACCTTGTGTGGTTGGAGTCCCATTaGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTG +
Preference number: 4 (lower is better)
Translates to: PGSHHLVWLESH*LCLDQGDCSAV
Trigger: CACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGGACTCCAACCACACAAGGTGGTGACTTCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp GCAAGGTCAAAGGAGGTGTTTCCCCAACCACATGACTaGGGTCTTCACCTGATTCTGCAGAAGCCATCTCTG +
Preference number: 4 (lower is better)
Translates to: ARSKEVFPQPHD*GLHLILQKPSL
Trigger: CAGAGATGGCTTCTGCAGAATCAGGTGAAGACCCAAGTCATGTGGTTGGGGAAACACCTCCTTTGACCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp CTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTaGACTGGCAAGGTCAAAGGAGGTGTTTCCCCAACC +
Preference number: 4 (lower is better)
Translates to: LNVGLFRCRVWR*TGKVKGGVSPT
Trigger: GGTTGGGGAAACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTTTCTCGTCTTGTTCATaGCTTGCAGGGAACCCAGCT +
Preference number: 4 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGFSSCS*LAGNPA
Trigger: AGCTGGGTTCCCTGCAAGTCATGAACAAGACGAGAA...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTTGTAGCCGGTGTTGTTaGGATACACAGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPCSRCC*DTQQRS
Trigger: GGACCTTTGCTGTGTATCTCAACAACACCGGCTACA...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GTCCCATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGTGTAGCCGGTGTTGTTaGGATACACAGCAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: VPCSLSAQRCKQNEGKSLCSRCC*DTQQRS
Trigger: GGACCTTTGCTGTGTATCTCAACAACACCGGCTACA...CAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGGACAGAGTCGTCAACTaGCATCAGAGTCTGCAGTCG +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVDRVVN*HQSLQS
Trigger: CGACTGCAGACTCTGATGTCAGTTGACGACTCTGTC...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTAGACAGAGTCGTCAACTaGCATCAGAGTCTGCAGTCG +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLDRVVN*HQSLQS
Trigger: CGACTGCAGACTCTGATGTCAGTTGACGACTCTGTC...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTGGTCCGCAGTGTAGATaGTGTAAGTGTTGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPGPQCR*CKCCPA
Trigger: AGCTGGACAACACTTACATCATCTACACTGCGGACC...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGAATTGTGCGTCTCGTTaGCTGTACGCAAACACCAGT +
Preference number: 4 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQNCASR*LYANTS
Trigger: ACTGGTGTTTGCGTACAGTCAACGAGACGCACAATT...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCTTGCTGTGTACTGTATTTGTaGGCTGATAAGGATCCGTAT +
Preference number: 4 (lower is better)
Translates to: KIPAAPEATPTFRSCIPCCVLYL*ADKDPY
Trigger: ATACGGATCCTTATCAGCTCACAAATACAGTACACA...GCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp GATGCATTGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAACTGTTGGATATTCTTaGCGGATTCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: DALIDSRMKGQEPGIRWETVGYS*RIPPSS
Trigger: GGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGT...TTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp ACAGAAATGCCAGCCAGAACTGTGATCCTTCCTCATATGGCATCACAGTCAGTGGTCTGGTATCTGGCTTaGTGGCACAGTTCCTTGACC +
Preference number: 4 (lower is better)
Translates to: TEMPARTVILPHMASQSVVWYLA*WHSSLT
Trigger: GGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGAC...CACTGACTGTGATGCCATATGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGCAGTTCTGCCCAGGCTaGTCACAGGCTGTCTGGTAT +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILQFCPG*SQAVWY
Trigger: ATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTG...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CCAAACAATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACATGCACTGCCAGTTCTaGCCAGGCTGCTCACAGGCT +
Preference number: 4 (lower is better)
Translates to: PNNSHCFDRKWHLSELVDMHCQF*PGCSQA
Trigger: AGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCAT...GTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATTGTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTTCTTTCTCTGGCTTCTaGTCGAGCGATAGCCAGAGT +
Preference number: 4 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPSFSGF*SSDSQS
Trigger: ACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGA...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GATGCATTGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAACTTGGTGGTAACACTTaGAGTTCTTCTTCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: DALIDSRMKGQEPGIRWELGGNT*SSSSSR
Trigger: CCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAG...TTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGTCTTCAGGGCCATGTaGTGCTGCATGGCTGATCAC +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILVFRAM*CCMADH
Trigger: GTGATCAGCCATGCAGCACCACATGGCCCTGAAGAC...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCTATCACGCCAGATTTTaGCCTTCTTGTTTGTCCGAA +
Preference number: 4 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGYHARF*PSCLSE
Trigger: TTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATA...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AGCCGACCTGCACTACAGAGCTGCCATTGGCTGCTCAGAAGCTCCGGACACACTTCATATTTGGGCAAGTaGTTTGACTGTTGGATATTC +
Preference number: 4 (lower is better)
Translates to: SRPALQSCHWLLRSSGHTSYLGK*FDCWIF
Trigger: GAATATCCAACAGTCAAACCACTTGCCCAAATATGA...AGTGTGTCCGGAGCTTCTGAGCAGCCAATGGCAGCTCTGTAGTGCAGGTCGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTTGGTATCTGGCTTGCTaGCACAGTTCCTTGACCCTC +
Preference number: 4 (lower is better)
Translates to: SRFGSHSFVSLCPILANIWYLAC*HSSLTL
Trigger: GAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCA...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTGTCCAGAGTCCCTACAATaGCACTCTTTGTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: NSLCPVPSFKRAPERQQCPESLQ*HSLSLS
Trigger: TGACAAAGACAAAGAGTGCCATTGTAGGGACTCTGG...ACACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTAGCTCCCTCTCACAGTaGATTGTGTCGTTTGGAAGA +
Preference number: 4 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCSSLSQ*IVSFGR
Trigger: TCTTCCAAACGACACAATCCACTGTGAGAGGGAGCT...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TGTTCATGTACAAAGGGAAACAGAAATGCCAGCCAGAACTGTGATCCTTCCTCACACGCTCTGGCTGACTaGTACAGCTCCCTCTCACAG +
Preference number: 4 (lower is better)
Translates to: CSCTKGNRNASQNCDPSSHALAD*YSSLSQ
Trigger: CTGTGAGAGGGAGCTGTACCAGTCAGCCAGAGCGTG...TGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGTTTCCCTTTGTACATGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGGGCAGTCTGCCAGTaGTTGTTGTCATGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTGAVCQ*LLSWVK
Trigger: CTTCACCCATGACAACAACCACTGGCAGACTGCCCC...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTCAATGTCCAGGCTCTTaGGTCTTGGGTTGCACTGTT +
Preference number: 4 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGQCPGS*VLGCTV
Trigger: AACAGTGCAACCCAAGACCCAAGAGCCTGGACATTG...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp AACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTGTCCCATTTGCTTTGTTTaGATCAGGGTGACTGTTCAG +
Preference number: 4 (lower is better)
Translates to: NSLCPVPSFKRAPERQQCPICFV*IRVTVQ
Trigger: CTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG...ACACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
3UTR CAA 72 bp AGCATCCTTCTCTGTCTCCACATCCTGGGAACATTTTaGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATG +
Preference number: 4 (lower is better)
Translates to: SILLCLHILGTF*LVLTGELMPKM
Trigger: CATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAGGATGTGGAGACAGAGAAGGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTTTCTCGTCTTGTTCATaGCTTGCAGGGAACCCAGCT +
Preference number: 4 (lower is better)
Translates to: SRFGSHSFVSLCPILANIFSSCS*LAGNPA
Trigger: AGCTGGGTTCCCTGCAAGTCATGAACAAGACGAGAA...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp ACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTGTGAGAAACGAGAATTCTTaGTTAATCCGAGCCATTCTC +
Preference number: 4 (lower is better)
Translates to: TAFVLFLHSRGHPSVSSVRNENS*LIRAIL
Trigger: GAGAATGGCTCGGATTAATCAAGAATTCTCGTTTCT...CACACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTAATCCATGCTTCTCCTTaGTGCCGTTGCGACAAACAG +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLIHASP*CRCDKQ
Trigger: CTGTTTGTCGCAACGGCATCAAGGAGAAGCATGGAT...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp ACAGAAATGCCAGCCAGAACTGTGATCCTTCCTCATATGGCATCACAGTCAGTGATCCATGCTTCTCCTTaGTGCCGTTGCGACAAACAG +
Preference number: 4 (lower is better)
Translates to: TEMPARTVILPHMASQSVIHASP*CRCDKQ
Trigger: CTGTTTGTCGCAACGGCATCAAGGAGAAGCATGGAT...CACTGACTGTGATGCCATATGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGACAGAGTCGTCAACTaGCATCAGAGTCTGCAGTCG +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTDRVVN*HQSLQS
Trigger: CGACTGCAGACTCTGATGTCAGTTGACGACTCTGTC...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCCAACATCTCATTCCTaGTGTCACCAGCAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: RKTEGKQPLSCSFIQEGTPTSHS*CHQQQP
Trigger: AGGCTGCTGCTGGTGACATCAGGAATGAGATGTTGG...GGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACGCTTCTCCTGTCGTTTaGCACCTTTCTCTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANASPVV*HLSLCC
Trigger: ACAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGC...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTAATTGTGCGTCTCGTTaGCTGTACGCAAACACCAGT +
Preference number: 4 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGNCASR*LYANTS
Trigger: ACTGGTGTTTGCGTACAGTCAACGAGACGCACAATT...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR TCA 90 bp GTCCCATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGAATTGTGCGTCTCGTTaGCTGTACGCAAACACCAGT +
Preference number: 4 (lower is better)
Translates to: VPCSLSAQRCKQNEGKSLNCASR*LYANTS
Trigger: ACTGGTGTTTGCGTACAGTCAACGAGACGCACAATT...CAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTAGCGCTCAGCAGAGGTaGCCAGGAAGTCACCACCTT +
Preference number: 4 (lower is better)
Translates to: QQDLVKLKETLKSLNEVISAQQR*PGSHHL
Trigger: AAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCT...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCAAGGGCCATGTGGTGCTaGATGGCTGATCACCATCAT +
Preference number: 4 (lower is better)
Translates to: KLHYAGREDMLTDSPGASRAMWC*MADHHH
Trigger: ATGATGGTGATCAGCCATGCAGCACCACATGGCCCT...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGTCTGGTATCTGGCTTaGTGGCACAGTTCCTTGACC +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTVWYLA*WHSSLT
Trigger: GGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGAC...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTGGAGTCAGTTCTGCCCAGGCTaGTCACAGGCTGTCTGGTAT +
Preference number: 4 (lower is better)
Translates to: NSHCFDRKWHLSELVDWSQFCPG*SQAVWY
Trigger: ATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTG...ACTCCAGTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTAATGCACTGCCAGTTCTaGCCAGGCTGCTCACAGGCT +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVMHCQF*PGCSQA
Trigger: AGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCAT...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTTCTTTCTCTGGCTTCTaGTCGAGCGATAGCCAGAGT +
Preference number: 4 (lower is better)
Translates to: SRFGSHSFVSLCPILANISFSGF*SSDSQS
Trigger: ACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGA...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGCAGGCGAGTCTGCCGGGTGTaGACAAATCTGGGCTTATAC +
Preference number: 4 (lower is better)
Translates to: QAQREPVILALFIAYSRRRVCRV*TNLGLY
Trigger: GTATAAGCCCAGATTTGTGCACACCCGGCAGACTCG...CCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR GCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTCGAGTCTGCCGGGTGTaGACAAATCTGGGCTTATAC +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTRVCRV*TNLGLY
Trigger: GTATAAGCCCAGATTTGTGCACACCCGGCAGACTCG...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCTTCACCAATAGCTATTGCTCTGGGGGAAGAGGCATCAAACCCAGTGTGGATGACCCCACAGCATTGTTaGTGTCTGCCAACATCTCAT +
Preference number: 4 (lower is better)
Translates to: SSPIAIALGEEASNPVWMTPQHC*CLPTSH
Trigger: ATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGT...CATCCACACTGGGTTTGATGCCTCTTCCCCCAGAGCAATAGCTATTGGTGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGCAGAATGGGGCAGTCTaGCAGTGGTTGTTGTCATGG +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILQNGAV*QWLLSW
Trigger: CCATGACAACAACCACTGGCAGACTGCCCCATTCTG...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACAGAATGGGGCAGTCTaGCAGTGGTTGTTGTCATGG +
Preference number: 4 (lower is better)
Translates to: KLHYAGREDMLTDSPGASQNGAV*QWLLSW
Trigger: CCATGACAACAACCACTGGCAGACTGCCCCATTCTG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCAGTGATGGACAGCACATaGGCGTGGTCACAAAGGCAT +
Preference number: 4 (lower is better)
Translates to: KLHYAGREDMLTDSPGASVMDST*AWSQRH
Trigger: ATGCCTTTGTGACCACGCCCATGTGCTGTCCATCAC...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTGGGTGTTATGTGTTaGGAGGCATTGGGGTACAGT +
Preference number: 4 (lower is better)
Translates to: SRFGSHSFVSLCPILANILGVMC*EALGYS
Trigger: ACTGTACCCCAATGCCTCCCAACACATAACACCCAG...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCTCATATTTGGGCAAGTaGTTTGACTGTTGGATATTC +
Preference number: 4 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLSYLGK*FDCWIF
Trigger: GAATATCCAACAGTCAAACCACTTGCCCAAATATGA...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTAGGCTGTCTGGTATCTaGCTTGCTGGCACAGTTCCT +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTRLSGI*LAGTVP
Trigger: AGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCT...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACCCAGAGTCCCTACAATaGCACTCTTTGTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: PSRFGSHSFVSLCPILANPESLQ*HSLSLS
Trigger: TGACAAAGACAAAGAGTGCCATTGTAGGGACTCTGG...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TTCCCTTTAGAAGCAGCTCATTGCTTTAGAGATGCTAAATGGCATCAGGCAAGGGGGGCAGTCTGCCAGTaGTTGTTGTCATGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: FPLEAAHCFRDAKWHQARGAVCQ*LLSWVK
Trigger: CTTCACCCATGACAACAACCACTGGCAGACTGCCCC...CCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp AGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCTCCCAAGTTCCAGAATaGGGCAGTCTGCCAGTGGTT +
Preference number: 4 (lower is better)
Translates to: RKTEGKQPLSCSFIQEGTSQVPE*GSLPVV
Trigger: AACCACTGGCAGACTGCCCCATTCTGGAACTTGGGA...GGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTATTCAGATGCAGGGTTTaGAGGTTGACTGGCAAGGTC +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLFRCRV*RLTGKV
Trigger: GACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAA...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
3UTR CAA 72 bp ATCCTTCTCTGTCTCCACATCCTGGGAACATTTTTGTaGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGA +
Preference number: 4 (lower is better)
Translates to: ILLCLHILGTFL*VLTGELMPKMR
Trigger: TCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAGGATGTGGAGACAGAGAAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGCAGGATCCATGCTTCTCCTTaGTGCCGTTGCGACAAACAG +
Preference number: 4 (lower is better)
Translates to: QAQREPVILALFIAYSRRIHASP*CRCDKQ
Trigger: CTGTTTGTCGCAACGGCATCAAGGAGAAGCATGGAT...CCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp CCACACACTGTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCGACAGAGTCGTCAACTaGCATCAGAGTCTGCAGTCG +
Preference number: 4 (lower is better)
Translates to: PHTVPSHRLLHFCKLLCIDRVVN*HQSLQS
Trigger: CGACTGCAGACTCTGATGTCAGTTGACGACTCTGTC...GATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAACAGTGTGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCAGGTCCGCAGTGTAGATaGTGTAAGTGTTGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: KLHYAGREDMLTDSPGASGPQCR*CKCCPA
Trigger: AGCTGGACAACACTTACATCATCTACACTGCGGACC...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GTCCCATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGCCAGGTCTAGAAGTTTaGGGACAGATTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: VPCSLSAQRCKQNEGKSLPGLEV*GQIYHP
Trigger: TGGATGGTAAATCTGTCCTCAAACTTCTAGACCTGG...CAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTACTCAGGAACTGCCTTTaGTTCTTTCTCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLLRNCL*FFLWLL
Trigger: CAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAG...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTCCAATGAAGCCCTGGTaGCCCTCATCATGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSPMKPW*PSSWRL
Trigger: CAAGCGCCATGATGAGGGTCACCAGGGCTTCATTGG...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTTGCTCCTTGAAGAGCTaGAGTTTGCTATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTCSLKS*SLLSTS
Trigger: GGAGGTGGATAGCAAACTTCAGCTCTTCAAGGAGCA...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGTGCTCCTTGAAGAGCTaGAGTTTGCTATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILCSLKS*SLLSTS
Trigger: GGAGGTGGATAGCAAACTTCAGCTCTTCAAGGAGCA...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCCGAGCGTCAGCAGTGTTGTGTACTGTATTTGTaGGCTGATAAGGATCCGTAT +
Preference number: 4 (lower is better)
Translates to: NSLCPVPSFKRAPERQQCCVLYL*ADKDPY
Trigger: ATACGGATCCTTATCAGCTCACAAATACAGTACACA...ACACTGCTGACGCTCGGGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR TCA 90 bp CGTCTATCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTGCAGGGTTTGGAGGTTaGCTGGCAAGGTCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: RLSSKHRESRSFLLYLLLAGFGG*LARSKE
Trigger: CTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGC...AAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATAGACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp AATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTGGAGTAGGGCCATGTGGTGCTaGATGGCTGATCACCATCAT +
Preference number: 4 (lower is better)
Translates to: NSHCFDRKWHLSELVDWSRAMWC*MADHHH
Trigger: ATGATGGTGATCAGCCATGCAGCACCACATGGCCCT...ACTCCAGTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGCAGTTCTGCCCAGGCTaGTCACAGGCTGTCTGGTAT +
Preference number: 4 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRQFCPG*SQAVWY
Trigger: ATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTG...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTACAGTTCTGCCCAGGCTaGTCACAGGCTGTCTGGTAT +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVQFCPG*SQAVWY
Trigger: ATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTG...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTCTTGGTGGTAACACTTaGAGTTCTTCTTCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGLGGNT*SSSSSR
Trigger: CCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAG...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR GCA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGAGCATTGTTGCTGTCTaGCAACATCTCATTCCTGAT +
Preference number: 4 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQSIVAV*QHLIPD
Trigger: ATCAGGAATGAGATGTTGGCAGACAGCAACAATGCT...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGTCTTGGGTCTTGGGTTaGACTGTTTATACCCTTGGC +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVSWVLG*TVYTLG
Trigger: GCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGA...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTATCTTGGGTCTTGGGTTaGACTGTTTATACCCTTGGC +
Preference number: 4 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLSWVLG*TVYTLG
Trigger: GCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGA...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTGTGCATAGTTATAGCTaGGTGTTATGTGTTGGGAGG +
Preference number: 4 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPVHSYS*VLCVGR
Trigger: CCTCCCAACACATAACACCCAGCTATAACTATGCAC...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTTCATATTTGGGCAAGTaGTTTGACTGTTGGATATTC +
Preference number: 4 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFSYLGK*FDCWIF
Trigger: GAATATCCAACAGTCAAACCACTTGCCCAAATATGA...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTATTGCTATCCACCTCCTaGGCAGCAGCCTCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVLLSTS*AAASLK
Trigger: CTTCAAGGAGGCTGCTGCCCAGGAGGTGGATAGCAA...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGCAGTGGTTGTTGTCATaGGTGAAGCAGGTAAGGCCA +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILQWLLS*VKQVRP
Trigger: TGGCCTTACCTGCTTCACCCATGACAACAACCACTG...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTACCACCTTGTGTGGTTaGAGTCCCATTTGCTTTGTT +
Preference number: 4 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGTTLCG*SPICFV
Trigger: AACAAAGCAAATGGGACTCCAACCACACAAGGTGGT...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR TCA 90 bp CCAAACAATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTGCTTGGACCACGAATaGAGAAAGGCACACGGATGT +
Preference number: 4 (lower is better)
Translates to: PNNSHCFDRKWHLSELVDCLDHE*RKAHGC
Trigger: ACATCCGTGTGCCTTTCTTCATTCGTGGTCCAAGCA...GTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATTGTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGTTTGGGCAAGTGGTTTaGCTGTTGGATATTCTTGCC +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVFGQVV*LLDILA
Trigger: GGCAAGAATATCCAACAGTCAAACCACTTGCCCAAA...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AAACGGAGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGCTGGCACAGTTCCTTaGCCCTCTCATATTTGGGCA +
Preference number: 4 (lower is better)
Translates to: KRRKTEGKQPLSCSFIQEAGTVP*PSHIWA
Trigger: TGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGC...CTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCTCCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp AAGGCTTTCAGGATGAGGGCTATGTATGAAGTTTCATGTATTCACTCAGTTCCGGCTGGCACAGTTCCTTaGCCCTCTCATATTTGGGCA +
Preference number: 4 (lower is better)
Translates to: KAFRMRAMYEVSCIHSVPAGTVP*PSHIWA
Trigger: TGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGC...CGGAACTGAGTGAATACATGAAACTTCATACATAGCCCTCATCCTGAAAGCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp CTTACCACCAACATTGTGAGCCATGCCTTTCTGCTAATCAAGTTTAGCACGTCGCTCAGGAACTGCCTTTaGTTCTTTCTCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LTTNIVSHAFLLIKFSTSLRNCL*FFLWLL
Trigger: CAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAG...CGACGTGCTAAACTTGATTAGCAGAAAGGCATGGCTCACAATGTTGGTGGTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGCTTCTCCTGTCGTTTaGCACCTTTCTCTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PICFVWIRVTVQQCKGSVASPVV*HLSLCC
Trigger: ACAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGC...TACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TGTTCATGTACAAAGGGAAACAGAAATGCCAGCCAGAACTGTGATCCTTCCTCATGCTCCTTGAAGAGCTaGAGTTTGCTATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: CSCTKGNRNASQNCDPSSCSLKS*SLLSTS
Trigger: GGAGGTGGATAGCAAACTTCAGCTCTTCAAGGAGCA...TGAGGAAGGATCACAGTTCTGGCTGGCATTTCTGTTTCCCTTTGTACATGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGTTCAGGGCCATGTGGTaGTGCATGGCTGATCACCAT +
Preference number: 4 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRFRAMW*CMADHH
Trigger: ATGGTGATCAGCCATGCAGCACCACATGGCCCTGAA...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTAAGAGTAGAGGTTGCGTaGATTCTGACGGACCGTGAG +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVRVEVA*ILTDRE
Trigger: CTCACGGTCCGTCAGAATGCACGCAACCTCTACTCT...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp CGTCTATCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTAACTCCTCCAGGCCTTaGCAGCTGGTGTCTGAAGTA +
Preference number: 4 (lower is better)
Translates to: RLSSKHRESRSFLLYLLLNSSRP*QLVSEV
Trigger: TACTTCAGACACCAGCTGGCAAGGCCTGGAGGAGTT...AAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATAGACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGGTGCATAGTTATAGCTaGGTGTTATGTGTTGGGAGG +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVVHSYS*VLCVGR
Trigger: CCTCCCAACACATAACACCCAGCTATAACTATGCAC...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGCCTCATCATGGCGCTTaGCAATGCTCCTTGGTGGTA +
Preference number: 4 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRPHHGA*QCSLVV
Trigger: TACCACCAAGGAGCATTGCCAAGCGCCATGATGAGG...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp AACCGGAGTTCTGTCAGAGTGGACAAGAGGACGCAATaGATCTTCAAAAGCATCCTTCTCTGTCTCCACATC +
Preference number: 4 (lower is better)
Translates to: NRSSVRVDKRTQ*IFKSILLCLHI
Trigger: GATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTCCACTCTGACAGAACTCCGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AAGGCTTTCAGGATGAGGGCTATGTATGAAGTTTCATGTATTCACTCAGTTCCGTTCTCGTCTTGTTCATaGCTTGCAGGGAACCCAGCT +
Preference number: 4 (lower is better)
Translates to: KAFRMRAMYEVSCIHSVPFSSCS*LAGNPA
Trigger: AGCTGGGTTCCCTGCAAGTCATGAACAAGACGAGAA...CGGAACTGAGTGAATACATGAAACTTCATACATAGCCCTCATCCTGAAAGCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGATCCATGCTTCTCCTTaGTGCCGTTGCGACAAACAG +
Preference number: 4 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRIHASP*CRCDKQ
Trigger: CTGTTTGTCGCAACGGCATCAAGGAGAAGCATGGAT...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGCCAGGTCTAGAAGTTTaGGGACAGATTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILPGLEV*GQIYHP
Trigger: TGGATGGTAAATCTGTCCTCAAACTTCTAGACCTGG...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCATTTGGGCAAGTGGTTTaGCTGTTGGATATTCTTGCC +
Preference number: 4 (lower is better)
Translates to: KLHYAGREDMLTDSPGASFGQVV*LLDILA
Trigger: GGCAAGAATATCCAACAGTCAAACCACTTGCCCAAA...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCTTTGGGCAAGTGGTTTaGCTGTTGGATATTCTTGCC +
Preference number: 4 (lower is better)
Translates to: RKTEGKQPLSCSFIQEGTFGQVV*LLDILA
Trigger: GGCAAGAATATCCAACAGTCAAACCACTTGCCCAAA...GGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp TTGGCAGTCATGATTGCCACCACTAGTTTACTAATCAAAACATGGAAAGAAATACAGCCTGGTGGCCAATaGAGCCCTGGTGACCCTCAT +
Preference number: 4 (lower is better)
Translates to: LAVMIATTSLLIKTWKEIQPGGQ*SPGDPH
Trigger: ATGAGGGTCACCAGGGCTTCATTGGCCACCAGGCTG...TATTTCTTTCCATGTTTTGATTAGTAAACTAGTGGTGGCAATCATGACTGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAACTTCCACGCTCTGGCTaGCTGGTACAGCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKLPRSG*LVQLPL
Trigger: GAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAG...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TTGGCAGTCATGATTGCCACCACTAGTTTACTAATCAAAACATGGAAAGAAATACTTCCACGCTCTGGCTaGCTGGTACAGCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: LAVMIATTSLLIKTWKEILPRSG*LVQLPL
Trigger: GAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAG...TATTTCTTTCCATGTTTTGATTAGTAAACTAGTGGTGGCAATCATGACTGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAAGTGTCCTCGATGCACTaGCAGTTCTGCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKVSSMH*QFCPGC
Trigger: GCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACAC...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AAGGCTTTCAGGATGAGGGCTATGTATGAAGTTTCATGTATTCACTCAGTTCCGTCTTTCTCTGGCTTCTaGTCGAGCGATAGCCAGAGT +
Preference number: 4 (lower is better)
Translates to: KAFRMRAMYEVSCIHSVPSFSGF*SSDSQS
Trigger: ACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGA...CGGAACTGAGTGAATACATGAAACTTCATACATAGCCCTCATCCTGAAAGCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTGTGACTGTTCAGCAGTaGAAAGGCTCTGTAGACAGC +
Preference number: 4 (lower is better)
Translates to: QQDLVKLKETLKSLNEVIVTVQQ*KGSVDS
Trigger: GCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCAC...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp CCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAAAGTGGTTTGACTGTTaGATATTCTTGCCGGATTCC +
Preference number: 4 (lower is better)
Translates to: PICFVWIRVTVQQCKGSVKWFDC*IFLPDS
Trigger: GGAATCCGGCAAGAATATCCAACAGTCAAACCACTT...TACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp CCAGCCAGAACTGTGATCCTTCCTCATATGGCATCACAGTCAGTGTTTATGCCTAAGTGGTTTGACTGTTaGATATTCTTGCCGGATTCC +
Preference number: 4 (lower is better)
Translates to: PARTVILPHMASQSVFMPKWFDC*IFLPDS
Trigger: GGAATCCGGCAAGAATATCCAACAGTCAAACCACTT...AGGCATAAACACTGACTGTGATGCCATATGAGGAAGGATCACAGTTCTGGCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTTCATATTTGGGCAAGTaGTTTGACTGTTGGATATTC +
Preference number: 4 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCSYLGK*FDCWIF
Trigger: GAATATCCAACAGTCAAACCACTTGCCCAAATATGA...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTTGGTATCTGGCTTGCTaGCACAGTTCCTTGACCCTC +
Preference number: 4 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSWYLAC*HSSLTL
Trigger: GAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCA...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTGGTCCTTCCACGCTCTaGCTGACTGGTACAGCTCCC +
Preference number: 4 (lower is better)
Translates to: ASFLQVALHPVFCLLTNAGPSTL*LTGTAP
Trigger: GGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACC...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGGTTTGGAGGTTGACTaGCAAGGTCAAAGGAGGTGT +
Preference number: 4 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPGLEVD*QGQRRC
Trigger: ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACC...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
3UTR CAA 72 bp AAAACAGCAGTGGACAATCAGTGGACAAGCTTCCAGTaGTATGACCTTCTTCATGTGGGAGAGAAGGATGAG +
Preference number: 4 (lower is better)
Translates to: KTAVDNQWTSFQ*YDLLHVGEKDE
Trigger: CTCATCCTTCTCTCCCACATGAAGAAGGTCATACAACTGGAAGCTTGTCCACTGATTGTCCACTGCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CAA 72 bp ATCACAGTCAGTGTTTATGCCTTTGACACAGGATTGTaGGCATCACAAGGCACCCTTATCATACCTCTCACC +
Preference number: 4 (lower is better)
Translates to: ITVSVYAFDTGL*ASQGTLIIPLT
Trigger: GGTGAGAGGTATGATAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CAA 72 bp CTTCCTCATATGGCATCACAGTCAGTGTTTATGCCTTaGACACAGGATTGTTGGCATCACAAGGCACCCTTA +
Preference number: 4 (lower is better)
Translates to: LPHMASQSVFMP*TQDCWHHKAPL
Trigger: TAAGGGTGCCTTGTGATGCCAACAATCCTGTGTCAAAGGCATAAACACTGACTGTGATGCCATATGAGGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGAGAAACGAGAATTCTTaGTTAATCCGAGCCATTCTC +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVRNENS*LIRAIL
Trigger: GAGAATGGCTCGGATTAATCAAGAATTCTCGTTTCT...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CCAAACAATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACGCTTCTCCTGTCGTTTaGCACCTTTCTCTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PNNSHCFDRKWHLSELVDASPVV*HLSLCC
Trigger: ACAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGC...GTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATTGTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTTCTTGGGTCTTGGGTTaGACTGTTTATACCCTTGGC +
Preference number: 4 (lower is better)
Translates to: QQDLVKLKETLKSLNEVISWVLG*TVYTLG
Trigger: GCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGA...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp AAACGGAGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGTTGGAGTCCCATTTaGTTTGTTTGGATCAGGGTG +
Preference number: 4 (lower is better)
Translates to: KRRKTEGKQPLSCSFIQEGWSPI*FVWIRV
Trigger: CACCCTGATCCAAACAAAGCAAATGGGACTCCAACC...CTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCTCCGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTAGTTGGTCTGTTCAGATaGAGGGTTTGGAGGTTGACT +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVVGLFR*RVWRLT
Trigger: AGTCAACCTCCAAACCCTGCATCTGAACAGACCAAC...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp CGTCTATCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTCCATGTGGTGCTGCATaGCTGATCACCATCATAATG +
Preference number: 4 (lower is better)
Translates to: RLSSKHRESRSFLLYLLLPCGAA*LITIIM
Trigger: CATTATGATGGTGATCAGCCATGCAGCACCACATGG...AAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATAGACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTACCATGTGGTGCTGCATaGCTGATCACCATCATAATG +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVPCGAA*LITIIM
Trigger: CATTATGATGGTGATCAGCCATGCAGCACCACATGG...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTCAGTGGTTGTTGTCATaGGTGAAGCAGGTAAGGCCA +
Preference number: 4 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSQWLLS*VKQVRP
Trigger: TGGCCTTACCTGCTTCACCCATGACAACAACCACTG...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGAGAAACGAGAATTCTTaGTTAATCCGAGCCATTCTC +
Preference number: 4 (lower is better)
Translates to: DKRTQLIFKSILLCLHILRNENS*LIRAIL
Trigger: GAGAATGGCTCGGATTAATCAAGAATTCTCGTTTCT...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CGTCTATCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTCCAGGTCTAGAAGTTTaGGGACAGATTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: RLSSKHRESRSFLLYLLLPGLEV*GQIYHP
Trigger: TGGATGGTAAATCTGTCCTCAAACTTCTAGACCTGG...AAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGATAGACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR TCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTCTCAGGAACTGCCTTTaGTTCTTTCTCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSLRNCL*FFLWLL
Trigger: CAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAG...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGCTTCTTCTTCCAGGTTaGTGTCATATATTTCACCTT +
Preference number: 4 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVLLLPG*CHIFHL
Trigger: AAGGTGAAATATATGACATCAACCTGGAAGAAGAAG...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTAGCTTCTCCTGTCGTTTaGCACCTTTCTCTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVASPVV*HLSLCC
Trigger: ACAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGC...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp AGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGGGCACCTGTGTACTGTATTTGTaGGCTGATAAGGATCCGTAT +
Preference number: 4 (lower is better)
Translates to: RKTEGKQPLSCSFIQEGTCVLYL*ADKDPY
Trigger: ATACGGATCCTTATCAGCTCACAAATACAGTACACA...GGTGCCCTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR TCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTATTGCCAGCTGGTGTCTaGAGTAATATTGGACTGACT +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVLPAGV*SNIGLT
Trigger: AGTCAGTCCAATATTACTTCAGACACCAGCTGGCAA...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR TCA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAAGTTGGTGCTGACTGGTaGGCTGATGCCCAAGATGAG +
Preference number: 4 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKVGADW*ADAQDE
Trigger: CTCATCTTGGGCATCAGCTCACCAGTCAGCACCAAC...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCACTGTTGGATATTCTTaGCGGATTCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPTVGYS*RIPPSS
Trigger: GGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGT...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR GCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTACTTGGTGGTAACACTTaGAGTTCTTCTTCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVLGGNT*SSSSSR
Trigger: CCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAG...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp GTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTTCTTGGGTCTTGGGTTaGACTGTTTATACCCTTGGC +
Preference number: 4 (lower is better)
Translates to: VPSHRLLHFCKLLCILYSSWVLG*TVYTLG
Trigger: GCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGA...AGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR GCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTATCCTCCCATCCTATCTaGTTCTCAGTTTTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVSSHPI*FSVFLQ
Trigger: CTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGA...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp AAATTCTTTGTTCCCTCTGACTTAGGCCTCATAGTGCTATCAAAATTTTCCTTATTGCTATCCACCTCCTaGGCAGCAGCCTCCTTGAAG +
Preference number: 4 (lower is better)
Translates to: KFFVPSDLGLIVLSKFSLLLSTS*AAASLK
Trigger: CTTCAAGGAGGCTGCTGCCCAGGAGGTGGATAGCAA...TAAGGAAAATTTTGATAGCACTATGAGGCCTAAGTCAGAGGGAACAAAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTCTTCTTCTTCCAGGTTaGTGTCATATATTTCACCTT +
Preference number: 4 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTLLLPG*CHIFHL
Trigger: AAGGTGAAATATATGACATCAACCTGGAAGAAGAAG...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp CATCGAGCTAAACAACAACAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAACAAGAGGACGCAATTaGTCTTCAAAAGCATCCTTC +
Preference number: 4 (lower is better)
Translates to: HRAKQQQQDLVKLKETLKTRGRN*SSKASF
Trigger: GAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGT...TTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTGTTGTTGTTTAGCTCGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTAGAGTAGAGGTTGCGTaGATTCTGACGGACCGTGAG +
Preference number: 4 (lower is better)
Translates to: ASFLQVALHPVFCLLTNARVEVA*ILTDRE
Trigger: CTCACGGTCCGTCAGAATGCACGCAACCTCTACTCT...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp AAATTCTTTGTTCCCTCTGACTTAGGCCTCATAGTGCTATCAAAATTTTCCTTAAGGCTGTCTGGTATCTaGCTTGCTGGCACAGTTCCT +
Preference number: 4 (lower is better)
Translates to: KFFVPSDLGLIVLSKFSLRLSGI*LAGTVP
Trigger: AGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCT...TAAGGAAAATTTTGATAGCACTATGAGGCCTAAGTCAGAGGGAACAAAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTCCTCATCATGGCGCTTaGCAATGCTCCTTGGTGGTA +
Preference number: 4 (lower is better)
Translates to: ASFLQVALHPVFCLLTNAPHHGA*QCSLVV
Trigger: TACCACCAAGGAGCATTGCCAAGCGCCATGATGAGG...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAATCCCAAGTTCCAGAATaGGGCAGTCTGCCAGTGGTT +
Preference number: 4 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKSQVPE*GSLPVV
Trigger: AACCACTGGCAGACTGCCCCATTCTGGAACTTGGGA...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTTCCCAAGTTCCAGAATaGGGCAGTCTGCCAGTGGTT +
Preference number: 4 (lower is better)
Translates to: ASFLQVALHPVFCLLTNASQVPE*GSLPVV
Trigger: AACCACTGGCAGACTGCCCCATTCTGGAACTTGGGA...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
3UTR CAA 72 bp CATCGAGCTAAACAACAACAGCAAGACCTTGTGAAGTaGAAGGAGACACTGAAAAGTCTCAACGAGGTAATT +
Preference number: 4 (lower is better)
Translates to: HRAKQQQQDLVK*KETLKSLNEVI
Trigger: AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTGTTGTTGTTTAGCTCGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR TCA 90 bp AAGGCTTTCAGGATGAGGGCTATGTATGAAGTTTCATGTATTCACTCAGTTCCGAGAAACGAGAATTCTTaGTTAATCCGAGCCATTCTC +
Preference number: 4 (lower is better)
Translates to: KAFRMRAMYEVSCIHSVPRNENS*LIRAIL
Trigger: GAGAATGGCTCGGATTAATCAAGAATTCTCGTTTCT...CGGAACTGAGTGAATACATGAAACTTCATACATAGCCCTCATCCTGAAAGCCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTCCCTTTAGAAGCAGCTCATTGCTTTAGAGATGCTAAATGGCATCAGGCAAGGCTTCTTCTTCCAGGTTaGTGTCATATATTTCACCTT +
Preference number: 4 (lower is better)
Translates to: FPLEAAHCFRDAKWHQARLLLPG*CHIFHL
Trigger: AAGGTGAAATATATGACATCAACCTGGAAGAAGAAG...CCTTGCCTGATGCCATTTAGCATCTCTAAAGCAATGAGCTGCTTCTAAAGGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR TCA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGTGTGTACTGTATTTGTaGGCTGATAAGGATCCGTAT +
Preference number: 4 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRCVLYL*ADKDPY
Trigger: ATACGGATCCTTATCAGCTCACAAATACAGTACACA...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR TCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTACTTCTTCTTCCAGGTTaGTGTCATATATTTCACCTT +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVLLLPG*CHIFHL
Trigger: AAGGTGAAATATATGACATCAACCTGGAAGAAGAAG...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp TTGGCAGTCATGATTGCCACCACTAGTTTACTAATCAAAACATGGAAAGAAATAACCCCACAGCATTGTTaGTGTCTGCCAACATCTCAT +
Preference number: 4 (lower is better)
Translates to: LAVMIATTSLLIKTWKEITPQHC*CLPTSH
Trigger: ATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGT...TATTTCTTTCCATGTTTTGATTAGTAAACTAGTGGTGGCAATCATGACTGCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CCA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAACCATGTGGTGCTGCATaGCTGATCACCATCATAATG +
Preference number: 4 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKPCGAA*LITIIM
Trigger: CATTATGATGGTGATCAGCCATGCAGCACCACATGG...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
3UTR CAA 72 bp AAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATaGCTTATTCCCGCAGGATTTATTTCTTACCACCAA +
Preference number: 4 (lower is better)
Translates to: KHRESRSFLLYL*LIPAGFISYHQ
Trigger: TTGGTGGTAAGAAATAAATCCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR CCA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTACAAATGATTCACTTCTaGAATGTCATTATCCCATTC +
Preference number: 4 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVQMIHF*NVIIPF
Trigger: GAATGGGATAATGACATTCCAGAAGTGAATCATTTG...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR GCA 90 bp TTGGCAGTCATGATTGCCACCACTAGTTTACTAATCAAAACATGGAAAGAAATAAGCATTGTTGCTGTCTaGCAACATCTCATTCCTGAT +
Preference number: 4 (lower is better)
Translates to: LAVMIATTSLLIKTWKEISIVAV*QHLIPD
Trigger: ATCAGGAATGAGATGTTGGCAGACAGCAACAATGCT...TATTTCTTTCCATGTTTTGATTAGTAAACTAGTGGTGGCAATCATGACTGCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR GCA 90 bp AAATTCTTTGTTCCCTCTGACTTAGGCCTCATAGTGCTATCAAAATTTTCCTTAAGCATTGTTGCTGTCTaGCAACATCTCATTCCTGAT +
Preference number: 4 (lower is better)
Translates to: KFFVPSDLGLIVLSKFSLSIVAV*QHLIPD
Trigger: ATCAGGAATGAGATGTTGGCAGACAGCAACAATGCT...TAAGGAAAATTTTGATAGCACTATGAGGCCTAAGTCAGAGGGAACAAAGAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CCA 90 bp TTGGCAGTCATGATTGCCACCACTAGTTTACTAATCAAAACATGGAAAGAAATATATCACGCCAGATTTTaGCCTTCTTGTTTGTCCGAA +
Preference number: 4 (lower is better)
Translates to: LAVMIATTSLLIKTWKEIYHARF*PSCLSE
Trigger: TTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATA...TATTTCTTTCCATGTTTTGATTAGTAAACTAGTGGTGGCAATCATGACTGCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS GCA 90 bp TGGATTCGGAGCTTGCCGGATGTGTCCTCGATGCACTGCCAGTTCTaGCCAGGCTGCTCACAGGCTGTCTGGTATCTGGCTTGCTGGCAC +
Preference number: 5 (lower is better)
Translates to: WIRSLPDVSSMHCQF*PGCSQAVWYLACWH
Trigger: GTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCTCCGAATCCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 90 bp TTCGTTCCTGCTGTATCCTTCCTCGGAACCTCTGGGACCGAACGGTaGAACACAGGCTTCCCAGCAGCTGTGTGCCCAGCACGGCAAGCA +
Preference number: 5 (lower is better)
Translates to: FVPAVSFLGTSGTER*NTGFPAAVCPARQA
Trigger: TGCTTGCCGTGCTGGGCACACAGCTGCTGGGAAGCCTGTGTTCCACCGTTCGGTCCCAGAGGTTCCGAGGAAGGATACAGCAGGAACGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 90 bp AGCTTGCCGGATGTGTCCTCGATGCACTGCCAGTTCTGCCCAGGCTaGTCACAGGCTGTCTGGTATCTGGCTTGCTGGCACAGTTCCTTG +
Preference number: 5 (lower is better)
Translates to: SLPDVSSMHCQFCPG*SQAVWYLACWHSSL
Trigger: CAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GATGCATTGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAATCCGAGGCTCGTGCATaGCCTGCCACGAGGGAGACG +
Preference number: 5 (lower is better)
Translates to: DALIDSRMKGQEPGIRWESEARA*PATRET
Trigger: CGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGGA...TTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS TCA 90 bp CATGCAATCCGCGAGAGTAGAGGTTGCGTGCATTCTGACGGACCGTaGGCAGGTCGCTGGGTCCCTTACACTTGTGGATTCGGAGCTTGC +
Preference number: 5 (lower is better)
Translates to: HAIRESRGCVHSDGP*AGRWVPYTCGFGAC
Trigger: GCAAGCTCCGAATCCACAAGTGTAAGGGACCCAGCGACCTGCTCACGGTCCGTCAGAATGCACGCAACCTCTACTCTCGCGGATTGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 90 bp GTGAAGCAGGTAAGGCCAGGCAGGCTACACTCCTCTCCCTTCCTCTaGCGTTTCTTCTCCTTCCTCTCCTTCTTCCTCCTCCGATGCTCC +
Preference number: 5 (lower is better)
Translates to: VKQVRPGRLHSSPFL*RFFSFLSFFLLRCS
Trigger: GGAGCATCGGAGGAGGAAGAAGGAGAGGAAGGAGAAGAAACGGCAGAGGAAGGGAGAGGAGTGTAGCCTGCCTGGCCTTACCTGCTTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCGTGGTCACAAAGGCATaGGTGAAGGTGGCCCCACCC +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGVVTKA*VKVAPP
Trigger: GGGTGGGGCCACCTTCACCAATGCCTTTGTGACCAC...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGTCCGAGGCTCGTGCATaGCCTGCCACGAGGGAGACG +
Preference number: 5 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQSEARA*PATRET
Trigger: CGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGGA...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGCAGCTCGCTGGGTGTTATGTGTaGGGAGGCATTGGGGTACAG +
Preference number: 5 (lower is better)
Translates to: LLVLTGELMPKMRLGQQLAGCYV*GGIGVQ
Trigger: CTGTACCCCAATGCCTCCCAACACATAACACCCAGC...GAGCTGCTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCATGCTGGCACAGTTCCTaGACCCTCTCATATTTGGGC +
Preference number: 5 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPCWHSS*TLSYLG
Trigger: GCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCA...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CACCTCCTCCACCAACCTCCCGGGCCATTGGGTCACATGCTTCCCTTTAGAAGCTGCTGGCACAGTTCCTaGACCCTCTCATATTTGGGC +
Preference number: 5 (lower is better)
Translates to: HLLHQPPGPLGHMLPFRSCWHSS*TLSYLG
Trigger: GCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCA...GCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS TCA 90 bp GCCGTTTCTTCTCCTTCCTCTCCTTCTTCCTCCTCCGATGCTCCTTaGAGAGCTGAAGTTTGCTATCCACCTCCTGGGCAGCAGCCTCCT +
Preference number: 5 (lower is better)
Translates to: AVSSPSSPSSSSDAP*RAEVCYPPPGQQPP
Trigger: AGGAGGCTGCTGCCCAGGAGGTGGATAGCAAACTTCAGCTCTTCAAGGAGCATCGGAGGAGGAAGAAGGAGAGGAAGGAGAAGAAACGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCGCTGGGTGTTATGTGTaGGGAGGCATTGGGGTACAG +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGAGCYV*GGIGVQ
Trigger: CTGTACCCCAATGCCTCCCAACACATAACACCCAGC...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS GCA 90 bp TGCCAGTTCTGCCCAGGCTGCTCACAGGCTGTCTGGTATCTGGCTTaGTGGCACAGTTCCTTGACCCTCTCATATTTGGGCAAGTGGTTT +
Preference number: 5 (lower is better)
Translates to: CQFCPGCSQAVWYLA*WHSSLTLSYLGKWF
Trigger: AAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 90 bp GCACTCTTTGTCTTTGTCATGCAATCCGCGAGAGTAGAGGTTGCGTaGATTCTGACGGACCGTGAGCAGGTCGCTGGGTCCCTTACACTT +
Preference number: 5 (lower is better)
Translates to: ALFVFVMQSARVEVA*ILTDREQVAGSLTL
Trigger: AAGTGTAAGGGACCCAGCGACCTGCTCACGGTCCGTCAGAATGCACGCAACCTCTACTCTCGCGGATTGCATGACAAAGACAAAGAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGTCCGAGGCTCGTGCATaGCCTGCCACGAGGGAGACG +
Preference number: 5 (lower is better)
Translates to: DKRTQLIFKSILLCLHILSEARA*PATRET
Trigger: CGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGGA...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GAAGCCATCTCTGCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCAAATCCATGCTTCTCCTaGATGCCGTTGCGACAAACA +
Preference number: 5 (lower is better)
Translates to: EAISAGTKRSAEVTRKSPNPCFS*MPLRQT
Trigger: TGTTTGTCGCAACGGCATCAAGGAGAAGCATGGATT...TGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGCAGAGATGGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAGGAGGGCACTGTTAAATCCATGCTTCTCCTaGATGCCGTTGCGACAAACA +
Preference number: 5 (lower is better)
Translates to: QQNEGPGARDSVGRRALLNPCFS*MPLRQT
Trigger: TGTTTGTCGCAACGGCATCAAGGAGAAGCATGGATT...TAACAGTGCCCTCCTTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GTTCGTGGCCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACATTGCGCTGGAGGACGTaGGTGAACTCCATGTGGATA +
Preference number: 5 (lower is better)
Translates to: VRGLENSVNRTRQPTCTTLRWRT*VNSMWI
Trigger: TATCCACATGGAGTTCACCAACGTCCTCCAGCGCAA...TGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGGCCACGAAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp CCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACAGAGCTGCCCTCTCCACAAGCATGTaGTACAACCTCTCGACAGAG +
Preference number: 5 (lower is better)
Translates to: PREFSEQDQAADLHYRAALSTSM*YNLSTE
Trigger: CTCTGTCGAGAGGTTGTACAACATGCTTGTGGAGAG...GGCAGCTCTGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACTTTTGGCCTTCTTGTTaGTCCGAAACCTGTTACCCG +
Preference number: 5 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHFWPSC*SETCYP
Trigger: CGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAA...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCTGCTGGCACAGTTCCTaGACCCTCTCATATTTGGGC +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGCWHSS*TLSYLG
Trigger: GCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCA...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp AAAATCCCTGCTGCCCCAGAGGCCACTCCCACTTTCCGGTCATGCATTCCTTGCTGGCACTCTTTGTCTTaGTCATGCAATCCGCGAGAG +
Preference number: 5 (lower is better)
Translates to: KIPAAPEATPTFRSCIPCWHSLS*SCNPRE
Trigger: CTCTCGCGGATTGCATGACAAAGACAAAGAGTGCCA...GCAAGGAATGCATGACCGGAAAGTGGGAGTGGCCTCTGGGGCAGCAGGGATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTAAATTGTGCGTCTCGTaGACTGTACGCAAACACCAG +
Preference number: 5 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVKLCVS*TVRKHQ
Trigger: CTGGTGTTTGCGTACAGTCAACGAGACGCACAATTT...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAGGAGGGCACTGTTAAAATTGTGCGTCTCGTaGACTGTACGCAAACACCAG +
Preference number: 5 (lower is better)
Translates to: QQNEGPGARDSVGRRALLKLCVS*TVRKHQ
Trigger: CTGGTGTTTGCGTACAGTCAACGAGACGCACAATTT...TAACAGTGCCCTCCTTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS CCA 90 bp CCCATCCATCCCATAACTGTCCTCAATGTCCAGGCTCTTGGGTCTTaGGTTGCACTGTTTATACCCTTGGCAGCTTCGGAGCTCCATCAG +
Preference number: 5 (lower is better)
Translates to: PIHPITVLNVQALGS*VALFIPLAASELHQ
Trigger: CTGATGGAGCTCCGAAGCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGAGGACAGTTATGGGATGGATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGGCTGGGTGTTATGTGTaGGGAGGCATTGGGGTACAG +
Preference number: 5 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQAGCYV*GGIGVQ
Trigger: CTGTACCCCAATGCCTCCCAACACATAACACCCAGC...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp AGCCGACCTGCACTACAGAGCTGCCATTGGCTGCTCAGAAGCTCCGGACACACTTCCAGGTCTAGAAGTTaGAGGACAGATTTACCATCC +
Preference number: 5 (lower is better)
Translates to: SRPALQSCHWLLRSSGHTSRSRS*RTDLPS
Trigger: GGATGGTAAATCTGTCCTCAAACTTCTAGACCTGGA...AGTGTGTCCGGAGCTTCTGAGCAGCCAATGGCAGCTCTGTAGTGCAGGTCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGTTTTGGCCTTCTTGTTaGTCCGAAACCTGTTACCCG +
Preference number: 5 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRFWPSC*SETCYP
Trigger: CGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAA...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp AGACTGGGGCAGCAGCTCTGTCATACCATTGCCACTGACGACGTCACCTTCAGGGACTGTTGGATATTCTaGCCGGATTCCTCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RLGQQLCHTIATDDVTFRDCWIF*PDSSFF
Trigger: GAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTC...CCTGAAGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCTGCTGCCCCAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCTGGCACTCTTTGTCTTaGTCATGCAATCCGCGAGAG +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGWHSLS*SCNPRE
Trigger: CTCTCGCGGATTGCATGACAAAGACAAAGAGTGCCA...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTCTACAATGGCACTCTTaGTCTTTGTCATGCAATCCG +
Preference number: 5 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVLQWHS*SLSCNP
Trigger: CGGATTGCATGACAAAGACAAAGAGTGCCATTGTAG...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCGGAAGAATAAAGCACTaGTGTGTCACCCGGACAGTG +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGGRIKH*CVTRTV
Trigger: CACTGTCCGGGTGACACACAAGTGCTTTATTCTTCC...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GATGCATTGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAACCAGGCTCTTGGGTCTaGGGTTGCACTGTTTATACC +
Preference number: 5 (lower is better)
Translates to: DALIDSRMKGQEPGIRWEPGSWV*GCTVYT
Trigger: GGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGG...TTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS GCA 90 bp CCATCCCATAACTGTCCTCAATGTCCAGGCTCTTGGGTCTTGGGTTaGACTGTTTATACCCTTGGCAGCTTCGGAGCTCCATCAGCTGTA +
Preference number: 5 (lower is better)
Translates to: PSHNCPQCPGSWVLG*TVYTLGSFGAPSAV
Trigger: TACAGCTGATGGAGCTCCGAAGCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGAGGACAGTTATGGGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp GCTGGCACCAAGCGCTCAGCAGAGGTGACCAGGAAGTCACCACCTTGTGTGGTTATGATCTTTCTCGTCTaGTTCATGACTTGCAGGGAA +
Preference number: 5 (lower is better)
Translates to: AGTKRSAEVTRKSPPCVVMIFLV*FMTCRE
Trigger: TTCCCTGCAAGTCATGAACAAGACGAGAAAGATCAT...AACCACACAAGGTGGTGACTTCCTGGTCACCTCTGCTGAGCGCTTGGTGCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCAATCCATGCTTCTCCTaGATGCCGTTGCGACAAACA +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGNPCFS*MPLRQT
Trigger: TGTTTGTCGCAACGGCATCAAGGAGAAGCATGGATT...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTGTATCACGCCAGATTTaGGCCTTCTTGTTTGTCCGA +
Preference number: 5 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFVSRQI*AFLFVR
Trigger: TCGGACAAACAAGAAGGCCAAAATCTGGCGTGATAC...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACAGAGCTGCCCTACAATGGCACTCTTaGTCTTTGTCATGCAATCCG +
Preference number: 5 (lower is better)
Translates to: PREFSEQDQAADLHYRAALQWHS*SLSCNP
Trigger: CGGATTGCATGACAAAGACAAAGAGTGCCATTGTAG...GGCAGCTCTGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTTACTTTGGTGTTCCCTaGTTCCTCAGGAACTGCCTT +
Preference number: 5 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFYFGVP*FLRNCL
Trigger: AAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTA...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GTTCGTGGCCTAGAGAATTCAGTGAACAGGACCAGGCAGCCGACCTGCACTACATACTTTGGTGTTCCCTaGTTCCTCAGGAACTGCCTT +
Preference number: 5 (lower is better)
Translates to: VRGLENSVNRTRQPTCTTYFGVP*FLRNCL
Trigger: AAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTA...TGTAGTGCAGGTCGGCTGCCTGGTCCTGTTCACTGAATTCTCTAGGCCACGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCCCTCATCATGGCGCTaGGCAATGCTCCTTGGTGGT +
Preference number: 5 (lower is better)
Translates to: SRFGSHSFVSLCPILANIPSSWR*AMLLGG
Trigger: ACCACCAAGGAGCATTGCCAAGCGCCATGATGAGGG...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTACGTCTTGTTCATGACTaGCAGGGAACCCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: PICFVWIRVTVQQCKGSVRLVHD*QGTQLH
Trigger: GTGGAGCTGGGTTCCCTGCAAGTCATGAACAAGACG...TACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGCGTCTTGTTCATGACTaGCAGGGAACCCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVRLVHD*QGTQLH
Trigger: GTGGAGCTGGGTTCCCTGCAAGTCATGAACAAGACG...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CCACACACTGTTCCCTCTCATAGACTGCTTCATTTTTGCAAGTTGCTTTGCATCGTGGTCACAAAGGCATaGGTGAAGGTGGCCCCACCC +
Preference number: 5 (lower is better)
Translates to: PHTVPSHRLLHFCKLLCIVVTKA*VKVAPP
Trigger: GGGTGGGGCCACCTTCACCAATGCCTTTGTGACCAC...GATGCAAAGCAACTTGCAAAAATGAAGCAGTCTATGAGAGGGAACAGTGTGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTCTCTCCGTGTGGCCTACAATGGCACTCTTaGTCTTTGTCATGCAATCCG +
Preference number: 5 (lower is better)
Translates to: ATPLYHSAPSWPTFSPCGLQWHS*SLSCNP
Trigger: CGGATTGCATGACAAAGACAAAGAGTGCCATTGTAG...GCCACACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp ACTCATCGATGTTGCTTGCACCGGATAACTCCTCCAGGCCTTGCCAGCTGGTGTATCTGGGCTTATACTTaGGTGTTCCCTTGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: THRCCLHRITPPGLASWCIWAYT*VFPCSS
Trigger: TGAGGAACAAGGGAACACCAAAGTATAAGCCCAGAT...ACACCAGCTGGCAAGGCCTGGAGGAGTTATCCGGTGCAAGCAACATCGATGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTCCCTCATCATGGCGCTaGGCAATGCTCCTTGGTGGT +
Preference number: 5 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTPSSWR*AMLLGG
Trigger: ACCACCAAGGAGCATTGCCAAGCGCCATGATGAGGG...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTGGAAGAATAAAGCACTaGTGTGTCACCCGGACAGTG +
Preference number: 5 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCGRIKH*CVTRTV
Trigger: CACTGTCCGGGTGACACACAAGTGCTTTATTCTTCC...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCAGAGATGACTGGAGCGGAGGCACTGCCTTCGAGATTTGGTAGCCACTCCTTTAGCTTCTCCTGTCGTTaGACACCTTTCTCTTTGTTG +
Preference number: 5 (lower is better)
Translates to: AEMTGAEALPSRFGSHSFSFSCR*TPFSLL
Trigger: CAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGCT...AAAGGAGTGGCTACCAAATCTCGAAGGCAGTGCCTCCGCTCCAGTCATCTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS TCA 90 bp GCTGCTCACAGGCTGTCTGGTATCTGGCTTGCTGGCACAGTTCCTTaGCCCTCTCATATTTGGGCAAGTGGTTTGACTGTTGGATATTCT +
Preference number: 5 (lower is better)
Translates to: AAHRLSGIWLAGTVP*PSHIWASGLTVGYS
Trigger: AGAATATCCAACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 90 bp ATTTCACCTTCGAATTCAACAGACAGGGACCGAGTCTGCCGGGTGTaGACAAATCTGGGCTTATACTTTGGTGTTCCCTTGTTCCTCAGG +
Preference number: 5 (lower is better)
Translates to: ISPSNSTDRDRVCRV*TNLGLYFGVPLFLR
Trigger: CCTGAGGAACAAGGGAACACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACTCGGTCCCTGTCTGTTGAATTCGAAGGTGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACGTCTTGTTCATGACTaGCAGGGAACCCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: KLHYAGREDMLTDSPGASRLVHD*QGTQLH
Trigger: GTGGAGCTGGGTTCCCTGCAAGTCATGAACAAGACG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTGTGGTCACAAAGGCATaGGTGAAGGTGGCCCCACCC +
Preference number: 5 (lower is better)
Translates to: QQDLVKLKETLKSLNEVIVVTKA*VKVAPP
Trigger: GGGTGGGGCCACCTTCACCAATGCCTTTGTGACCAC...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CAA 90 bp CCTTCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACAATCCATGCTTCTCCTaGATGCCGTTGCGACAAACA +
Preference number: 5 (lower is better)
Translates to: PSRFGSHSFVSLCPILANNPCFS*MPLRQT
Trigger: TGTTTGTCGCAACGGCATCAAGGAGAAGCATGGATT...GTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGTTGCGCTGGAGGACGTaGGTGAACTCCATGTGGATA +
Preference number: 5 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVLRWRT*VNSMWI
Trigger: TATCCACATGGAGTTCACCAACGTCCTCCAGCGCAA...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGGCAAGGTCAAAGGAGGTGTCCTCAGGAACTGCCTTaGATTCTTTCTCTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: WSVQMQGLEVDWQGQRRCPQELP*ILSLAS
Trigger: AGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGG...ACACCTCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAACAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GATGCATTGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAATCTGGGCTTATACTTaGGTGTTCCCTTGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: DALIDSRMKGQEPGIRWEIWAYT*VFPCSS
Trigger: TGAGGAACAAGGGAACACCAAAGTATAAGCCCAGAT...TTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TCTCTCCGTGTGGCTGGAGTGAAGAGGCTGCTCCACACGGGACACATCGAACACTCTTCTTCTTCCAGGTaGATGTCATATATTTCACCT +
Preference number: 5 (lower is better)
Translates to: SLRVAGVKRLLHTGHIEHSSSSR*MSYISP
Trigger: AGGTGAAATATATGACATCAACCTGGAAGAAGAAGA...GTGTTCGATGTGTCCCGTGTGGAGCAGCCTCTTCACTCCAGCCACACGGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CACCTCCTCCACCAACCTCCCGGGCCATTGGGTCACATGCTTCCCTTTAGAAGCTCTTCTTCTTCCAGGTaGATGTCATATATTTCACCT +
Preference number: 5 (lower is better)
Translates to: HLLHQPPGPLGHMLPFRSSSSSR*MSYISP
Trigger: AGGTGAAATATATGACATCAACCTGGAAGAAGAAGA...GCTTCTAAAGGGAAGCATGTGACCCAATGGCCCGGGAGGTTGGTGGAGGAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTGGAGTCCCTCATCATGGCGCTaGGCAATGCTCCTTGGTGGT +
Preference number: 5 (lower is better)
Translates to: NSHCFDRKWHLSELVDWSPSSWR*AMLLGG
Trigger: ACCACCAAGGAGCATTGCCAAGCGCCATGATGAGGG...ACTCCAGTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TCCAGTTGTATGACCTTCTTCATGTGGGAGAGAAGGATGAGGGCTCTTAAGGGGGGAAGAATAAAGCACTaGTGTGTCACCCGGACAGTG +
Preference number: 5 (lower is better)
Translates to: SSCMTFFMWERRMRALKGGRIKH*CVTRTV
Trigger: CACTGTCCGGGTGACACACAAGTGCTTTATTCTTCC...CCCCTTAAGAGCCCTCATCCTTCTCTCCCACATGAAGAAGGTCATACAACTGGA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp GATGCATTGATTGACAGCAGAATGAAGGGCCAGGAGCCAGGGATTCGGTGGGAAAGCTTCTCCTGTCGTTaGACACCTTTCTCTTTGTTG +
Preference number: 5 (lower is better)
Translates to: DALIDSRMKGQEPGIRWESFSCR*TPFSLL
Trigger: CAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGCT...TTCCCACCGAATCCCTGGCTCCTGGCCCTTCATTCTGCTGTCAATCAATGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp ACATTTTTGTTGGTGCTGACTGGTGAGCTGATGCCCAAGATGAGACTGGGGCAGAAATTGTGCGTCTCGTaGACTGTACGCAAACACCAG +
Preference number: 5 (lower is better)
Translates to: TFLLVLTGELMPKMRLGQKLCVS*TVRKHQ
Trigger: CTGGTGTTTGCGTACAGTCAACGAGACGCACAATTT...CTGCCCCAGTCTCATCTTGGGCATCAGCTCACCAGTCAGCACCAACAAAAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTAAGCTCTGTCATACCATaGCCACTGACGACGTCACCT +
Preference number: 5 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLSSVIP*PLTTSP
Trigger: AGGTGACGTCGTCAGTGGCAATGGTATGACAGAGCT...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp CAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGCAGGTCACTCTGCCCCATCTaGGCCAACATTCTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: QAQREPVILALFIAYSRRSLCPI*ANILSV
Trigger: CACGGAGAGAATGTTGGCCAAGATGGGGCAGAGTGA...CCTGCGGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS TCA 90 bp AATCTCTTTATCAATGTAGGCCTTATGGTCCTTCCACGCTCTGGCTaGCTGGTACAGCTCCCTCTCACAGTGGATTGTGTCGTTTGGAAG +
Preference number: 5 (lower is better)
Translates to: NLFINVGLMVLPRSG*LVQLPLTVDCVVWK
Trigger: CTTCCAAACGACACAATCCACTGTGAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACCATAAGGCCTACATTGATAAAGAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 90 bp TTCCCTTGTTCCTCAGGAACTGCCTTTGATTCTTTCTCTGGCTTCTaGTCGAGCGATAGCCAGAGTCCCTACAATGGCACTCTTTGTCTT +
Preference number: 5 (lower is better)
Translates to: FPCSSGTAFDSFSGF*SSDSQSPYNGTLCL
Trigger: AAGACAAAGAGTGCCATTGTAGGGACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGGAACAAGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 90 bp CTTCAATCTCTTTATCAATGTAGGCCTTATGGTCCTTCCACGCTCTaGCTGACTGGTACAGCTCCCTCTCACAGTGGATTGTGTCGTTTG +
Preference number: 5 (lower is better)
Translates to: LQSLYQCRPYGPSTL*LTGTAPSHSGLCRL
Trigger: CAAACGACACAATCCACTGTGAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACCATAAGGCCTACATTGATAAAGAGATTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp CTTACCACCAACATTGTGAGCCATGCCTTTCTGCTAATCAAGTTTAGCACGTCGTTGCGCTGGAGGACGTaGGTGAACTCCATGTGGATA +
Preference number: 5 (lower is better)
Translates to: LTTNIVSHAFLLIKFSTSLRWRT*VNSMWI
Trigger: TATCCACATGGAGTTCACCAACGTCCTCCAGCGCAA...CGACGTGCTAAACTTGATTAGCAGAAAGGCATGGCTCACAATGTTGGTGGTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTACTCTCCACAAGCATGTaGTACAACCTCTCGACAGAG +
Preference number: 5 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLLSTSM*YNLSTE
Trigger: CTCTGTCGAGAGGTTGTACAACATGCTTGTGGAGAG...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGCTGCGACTGTTGGATATTCTaGCCGGATTCCTCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: HAASLPNGVNKMKENPCCDCWIF*PDSSFF
Trigger: GAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTC...GCAGCAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTTGCTGGCACAGTTCCTaGACCCTCTCATATTTGGGC +
Preference number: 5 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTCWHSS*TLSYLG
Trigger: GCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCA...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTATGGCACTCTTTGTCTTaGTCATGCAATCCGCGAGAG +
Preference number: 5 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLWHSLS*SCNPRE
Trigger: CTCTCGCGGATTGCATGACAAAGACAAAGAGTGCCA...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GTCCCATGCAGCCTCTCTGCCCAACGGTGTAAACAAAATGAAGGAAAATCCCTGCCTCAGGAACTGCCTTaGATTCTTTCTCTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: VPCSLSAQRCKQNEGKSLPQELP*ILSLAS
Trigger: AGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGG...CAGGGATTTTCCTTCATTTTGTTTACACCGTTGGGCAGAGAGGCTGCATGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTTACTTTGGTGTTCCCTaGTTCCTCAGGAACTGCCTT +
Preference number: 5 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPYFGVP*FLRNCL
Trigger: AAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTA...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTCCAGGCTCTTGGGTCTaGGGTTGCACTGTTTATACC +
Preference number: 5 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTPGSWV*GCTVYT
Trigger: GGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGG...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACCAGGCTCTTGGGTCTaGGGTTGCACTGTTTATACC +
Preference number: 5 (lower is better)
Translates to: KLHYAGREDMLTDSPGASPGSWV*GCTVYT
Trigger: GGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTACTGGGAACATTTTTGTaGGTGCTGACTGGTGAGCTG +
Preference number: 5 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLLGTFL*VLTGEL
Trigger: CAGCTCACCAGTCAGCACCAACAAAAATGTTCCCAG...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp AAGGCTTTCAGGATGAGGGCTATGTATGAAGTTTCATGTATTCACTCAGTTCCGCGTCTTGTTCATGACTaGCAGGGAACCCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: KAFRMRAMYEVSCIHSVPRLVHD*QGTQLH
Trigger: GTGGAGCTGGGTTCCCTGCAAGTCATGAACAAGACG...CGGAACTGAGTGAATACATGAAACTTCATACATAGCCCTCATCCTGAAAGCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAATCCGAGGCTCGTGCATaGCCTGCCACGAGGGAGACG +
Preference number: 5 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKSEARA*PATRET
Trigger: CGTCTCCCTCGTGGCAGGCAATGCACGAGCCTCGGA...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCACTCTCCACAAGCATGTaGTACAACCTCTCGACAGAG +
Preference number: 5 (lower is better)
Translates to: KLHYAGREDMLTDSPGASLSTSM*YNLSTE
Trigger: CTCTGTCGAGAGGTTGTACAACATGCTTGTGGAGAG...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACAGCCCTTCCAGGTCTAGAAGTTaGAGGACAGATTTACCATCC +
Preference number: 5 (lower is better)
Translates to: FVWIRVTVQQCKGSVDSPSRSRS*RTDLPS
Trigger: GGATGGTAAATCTGTCCTCAAACTTCTAGACCTGGA...AGGGCTGTCTACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTATTTTGGCCTTCTTGTTaGTCCGAAACCTGTTACCCG +
Preference number: 5 (lower is better)
Translates to: PICFVWIRVTVQQCKGSVFWPSC*SETCYP
Trigger: CGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAA...TACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTCAGGATGATGCAGCTCCTCCCATCCTATCTGCTTCTCAGTTTTTCTCCAGTGGTATCACGCCAGATTTaGGCCTTCTTGTTTGTCCGA +
Preference number: 5 (lower is better)
Translates to: FRMMQLLPSYLLLSFSPVVSRQI*AFLFVR
Trigger: TCGGACAAACAAGAAGGCCAAAATCTGGCGTGATAC...CACTGGAGAAAAACTGAGAAGCAGATAGGATGGGAGGAGCTGCATCATCCTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TCGAGATTTGGTAGCCACTCCTTTGTATCACTCTGCCCCATCTTGGCCAACATTGACTGTTGGATATTCTaGCCGGATTCCTCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: SRFGSHSFVSLCPILANIDCWIF*PDSSFF
Trigger: GAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTC...AATGTTGGCCAAGATGGGGCAGAGTGATACAAAGGAGTGGCTACCAAATCTCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CCCATTTGCTTTGTTTGGATCAGGGTGACTGTTCAGCAGTGCAAAGGCTCTGTAGACTGTTGGATATTCTaGCCGGATTCCTCCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PICFVWIRVTVQQCKGSVDCWIF*PDSSFF
Trigger: GAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTC...TACAGAGCCTTTGCACTGCTGAACAGTCACCCTGATCCAAACAAAGCAAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTTGGCACTCTTTGTCTTaGTCATGCAATCCGCGAGAG +
Preference number: 5 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTWHSLS*SCNPRE
Trigger: CTCTCGCGGATTGCATGACAAAGACAAAGAGTGCCA...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTACCTCAGGAACTGCCTTaGATTCTTTCTCTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLPQELP*ILSLAS
Trigger: AGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGG...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGGAAGAATAAAGCACTaGTGTGTCACCCGGACAGTG +
Preference number: 5 (lower is better)
Translates to: DKRTQLIFKSILLCLHILGRIKH*CVTRTV
Trigger: CACTGTCCGGGTGACACACAAGTGCTTTATTCTTCC...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CTTACTCTGTCACTCAGCAGATGGCATCCGCATCTGAGAAATGGCTGGTTAGGTAGCTTCTCCTGTCGTTaGACACCTTTCTCTTTGTTG +
Preference number: 5 (lower is better)
Translates to: LTLSLSRWHPHLRNGWLGSFSCR*TPFSLL
Trigger: CAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGCT...ACCTAACCAGCCATTTCTCAGATGCGGATGCCATCTGCTGAGTGACAGAGTAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CAA 90 bp AAACTTCACTATGCAGGCAGAGAAGATATGTTGACAGACTCACCAGGGGCATCATCTCTGGACTTAACGTaGGTCTGTTCAGATGCAGGG +
Preference number: 5 (lower is better)
Translates to: KLHYAGREDMLTDSPGASSLDLT*VCSDAG
Trigger: CCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGA...TGATGCCCCTGGTGAGTCTGTCAACATATCTTCTCTGCCTGCATAGTGAAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS GCA 90 bp ATGTCATATATTTCACCTTCGAATTCAACAGACAGGGACCGAGTCTaGCGGGTGTGCACAAATCTGGGCTTATACTTTGGTGTTCCCTTG +
Preference number: 5 (lower is better)
Translates to: MSYISPSNSTDRDRV*RVCTNLGLYFGVPL
Trigger: CAAGGGAACACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACTCGGTCCCTGTCTGTTGAATTCGAAGGTGAAATATATGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTATTGCGCTGGAGGACGTaGGTGAACTCCATGTGGATA +
Preference number: 5 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVLRWRT*VNSMWI
Trigger: TATCCACATGGAGTTCACCAACGTCCTCCAGCGCAA...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTGTATCACGCCAGATTTaGGCCTTCTTGTTTGTCCGA +
Preference number: 5 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTVSRQI*AFLFVR
Trigger: TCGGACAAACAAGAAGGCCAAAATCTGGCGTGATAC...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGAAATTGTGCGTCTCGTaGACTGTACGCAAACACCAG +
Preference number: 5 (lower is better)
Translates to: DKRTQLIFKSILLCLHILKLCVS*TVRKHQ
Trigger: CTGGTGTTTGCGTACAGTCAACGAGACGCACAATTT...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGCCAGGCTCTTGGGTCTaGGGTTGCACTGTTTATACC +
Preference number: 5 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRPGSWV*GCTVYT
Trigger: GGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGG...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCCCAGGCTCTTGGGTCTaGGGTTGCACTGTTTATACC +
Preference number: 5 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPPGSWV*GCTVYT
Trigger: GGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGG...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp TATGTGATCCATACTGTGTGTCCTTGCCGGGGGTCTATTCCTTTGTCCTTCCTATCCCATTTGCTTTGTTaGGATCAGGGTGACTGTTCA +
Preference number: 5 (lower is better)
Translates to: YVIHTVCPCRGSIPLSFLSHLLC*DQGDCS
Trigger: TGAACAGTCACCCTGATCCAAACAAAGCAAATGGGA...TAGGAAGGACAAAGGAATAGACCCCCGGCAAGGACACACAGTATGGATCACATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp AAACGGAGAAAGACTGAAGGAAAACAGCCTTTGTCCTGTTCCTTCATTCAAGAGTGCAGGGTTTGGAGGTaGACTGGCAAGGTCAAAGGA +
Preference number: 5 (lower is better)
Translates to: KRRKTEGKQPLSCSFIQECRVWR*TGKVKG
Trigger: TCCTTTGACCTTGCCAGTCAACCTCCAAACCCTGCA...CTCTTGAATGAAGGAACAGGACAAAGGCTGTTTTCCTTCAGTCTTTCTCCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCGTTCAGATGCAGGGTTaGGAGGTTGACTGGCAAGGT +
Preference number: 5 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPVQMQG*EVDWQG
Trigger: ACCTTGCCAGTCAACCTCCAAACCCTGCATCTGAAC...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS TCA 90 bp TTATACCCTTGGCAGCTTCGGAGCTCCATCAGCTGTATGTGTAGCTaGTTTAAGATGCTCCGTTCTACTGTGTGTACTGTATTTGTGAGC +
Preference number: 5 (lower is better)
Translates to: LYPWQLRSSISCMCS*FKMLRSTVCTVFVS
Trigger: GCTCACAAATACAGTACACACAGTAGAACGGAGCATCTTAAATCAGCTACACATACAGCTGATGGAGCTCCGAAGCTGCCAAGGGTATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000185780.2
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAAGTGGTCACAAAGGCATaGGTGAAGGTGGCCCCACCC +
Preference number: 5 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKVVTKA*VKVAPP
Trigger: GGGTGGGGCCACCTTCACCAATGCCTTTGTGACCAC...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGTCCAGGTCTAGAAGTTaGAGGACAGATTTACCATCC +
Preference number: 5 (lower is better)
Translates to: DKRTQLIFKSILLCLHILSRSRS*RTDLPS
Trigger: GGATGGTAAATCTGTCCTCAAACTTCTAGACCTGGA...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CCAAACAATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTTTTGGCCTTCTTGTTaGTCCGAAACCTGTTACCCG +
Preference number: 5 (lower is better)
Translates to: PNNSHCFDRKWHLSELVDFWPSC*SETCYP
Trigger: CGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAA...GTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATTGTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGGGAAGCTTCTCCTGTCGTTaGACACCTTTCTCTTTGTTG +
Preference number: 5 (lower is better)
Translates to: KRTQLIFKSILLCLHILGSFSCR*TPFSLL
Trigger: CAACAAAGAGAAAGGTGTCAAACGACAGGAGAAGCT...TCCCAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS TCA 90 bp CAATGCTCCTTGGTGGTAACACTTGCAGTTCTTCTTCTTCCAGGTTaGTGTCATATATTTCACCTTCGAATTCAACAGACAGGGACCGAG +
Preference number: 5 (lower is better)
Translates to: QCSLVVTLAVLLLPG*CHIFHLRIQQTGTE
Trigger: CTCGGTCCCTGTCTGTTGAATTCGAAGGTGAAATATATGACATCAACCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAGGAGCATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 90 bp CACAGTTCCTTGACCCTCTCATATTTGGGCAAGTGGTTTGACTGTTaGATATTCTTGCCGGATTCCTCCTTCTTCCGTAAAAATTTCCCT +
Preference number: 5 (lower is better)
Translates to: HSSLTLSYLGKWFDC*IFLPDSSFFRKNFP
Trigger: AGGGAAATTTTTACGGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp CTTACCACCAACATTGTGAGCCATGCCTTTCTGCTAATCAAGTTTAGCACGTCGCAGATTTTGGCCTTCTaGTTTGTCCGAAACCTGTTA +
Preference number: 5 (lower is better)
Translates to: LTTNIVSHAFLLIKFSTSQILAF*FVRNLL
Trigger: TAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTG...CGACGTGCTAAACTTGATTAGCAGAAAGGCATGGCTCACAATGTTGGTGGTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TCAAGTTTAGCACGTCGAGGTAAAATACATGCAATGGTTCCTGGGAAAAGCGTACCTCAGGAACTGCCTTaGATTCTTTCTCTGGCTTCT +
Preference number: 5 (lower is better)
Translates to: SSLARRGKIHAMVPGKSVPQELP*ILSLAS
Trigger: AGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGG...TACGCTTTTCCCAGGAACCATTGCATGTATTTTACCTCGACGTGCTAAACTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp CAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAGTCTCAACGAGGTAATTTACTTTGGTGTTCCCTaGTTCCTCAGGAACTGCCTT +
Preference number: 5 (lower is better)
Translates to: QQDLVKLKETLKSLNEVIYFGVP*FLRNCL
Trigger: AAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTA...AATTACCTCGTTGAGACTTTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CAA 90 bp CATCGAGCTAAACAACAACAGCAAGACCTTGTGAAGTTGAAGGAGACACTGAAAAAATTGTGCGTCTCGTaGACTGTACGCAAACACCAG +
Preference number: 5 (lower is better)
Translates to: HRAKQQQQDLVKLKETLKKLCVS*TVRKHQ
Trigger: CTGGTGTTTGCGTACAGTCAACGAGACGCACAATTT...TTTCAGTGTCTCCTTCAACTTCACAAGGTCTTGCTGTTGTTGTTTAGCTCGATG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000177608.8
ENSMUST00000185780.2
CDS-3UTR CAA 90 bp AAATTCTTTGTTCCCTCTGACTTAGGCCTCATAGTGCTATCAAAATTTTCCTTAGCTGGGTGTTATGTGTaGGGAGGCATTGGGGTACAG +
Preference number: 5 (lower is better)
Translates to: KFFVPSDLGLIVLSKFSLAGCYV*GGIGVQ
Trigger: CTGTACCCCAATGCCTCCCAACACATAACACCCAGC...TAAGGAAAATTTTGATAGCACTATGAGGCCTAAGTCAGAGGGAACAAAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AATTCACACTGTTTTGATAGGAAGTGGCACTTGAGTGAGCTCGTTGACTGGAGTCAGATTTTGGCCTTCTaGTTTGTCCGAAACCTGTTA +
Preference number: 5 (lower is better)
Translates to: NSHCFDRKWHLSELVDWSQILAF*FVRNLL
Trigger: TAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTG...ACTCCAGTCAACGAGCTCACTCAAGTGCCACTTCCTATCAAAACAGTGTGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp TCTAGCAAGCACAGAGAGAGCCGGTCATTCTTGCTTTATTTATTGCTTATTCCCATCTGGGCTTATACTTaGGTGTTCCCTTGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: SSKHRESRSFLLYLLLIPIWAYT*VFPCSS
Trigger: TGAGGAACAAGGGAACACCAAAGTATAAGCCCAGAT...GGGAATAAGCAATAAATAAAGCAAGAATGACCGGCTCTCTCTGTGCTTGCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177608.8
CDS-3UTR CAA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGATCTGGGCTTATACTTaGGTGTTCCCTTGTTCCTCA +
Preference number: 5 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRIWAYT*VFPCSS
Trigger: TGAGGAACAAGGGAACACCAAAGTATAAGCCCAGAT...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTATCCCATTCAAGTTTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGCAGATTTTGGCCTTCTaGTTTGTCCGAAACCTGTTA +
Preference number: 5 (lower is better)
Translates to: LSHSSFLSGLNVGLFRCRQILAF*FVRNLL
Trigger: TAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTG...CCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAAACTTGAATGGGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp TTTCTCTCTGGACTTAACGTTGGTCTGTTCAGATGCAGGGTTTGGAGGTTGACTTCTTCTTCTTCCAGGTaGATGTCATATATTTCACCT +
Preference number: 5 (lower is better)
Translates to: FLSGLNVGLFRCRVWRLTSSSSR*MSYISP
Trigger: AGGTGAAATATATGACATCAACCTGGAAGAAGAAGA...AGTCAACCTCCAAACCCTGCATCTGAACAGACCAACGTTAAGTCCAGAGAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GACAAGAGGACGCAATTGATCTTCAAAAGCATCCTTCTCTGTCTCCACATCCTGTCTTCTTCTTCCAGGTaGATGTCATATATTTCACCT +
Preference number: 5 (lower is better)
Translates to: DKRTQLIFKSILLCLHILSSSSR*MSYISP
Trigger: AGGTGAAATATATGACATCAACCTGGAAGAAGAAGA...CAGGATGTGGAGACAGAGAAGGATGCTTTTGAAGATCAATTGCGTCCTCTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp GCTTCATTTTTGCAAGTTGCTTTGCATCCTGTATTCTGTTTACTAACAAATGCTGTATCACGCCAGATTTaGGCCTTCTTGTTTGTCCGA +
Preference number: 5 (lower is better)
Translates to: ASFLQVALHPVFCLLTNAVSRQI*AFLFVR
Trigger: TCGGACAAACAAGAAGGCCAAAATCTGGCGTGATAC...AGCATTTGTTAGTAAACAGAATACAGGATGCAAAGCAACTTGCAAAAATGAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000186051.7
CDS-3UTR CAA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAATCCAGGTCTAGAAGTTaGAGGACAGATTTACCATCC +
Preference number: 5 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKSRSRS*RTDLPS
Trigger: GGATGGTAAATCTGTCCTCAAACTTCTAGACCTGGA...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS-3UTR CAA 90 bp AATAATAACACTACCAACCAAGCAGACACAGTATTCCAAACTCAAAGTGCAAAACTACAATGGCACTCTTaGTCTTTGTCATGCAATCCG +
Preference number: 5 (lower is better)
Translates to: NNNTTNQADTVFQTQSAKLQWHS*SLSCNP
Trigger: CGGATTGCATGACAAAGACAAAGAGTGCCATTGTAG...TTTTGCACTTTGAGTTTGGAATACTGTGTCTGCTTGGTTGGTAGTGTTATTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
CDS CAA 90 bp ACCGTGAGCAGGTCGCTGGGTCCCTTACACTTGTGGATTCGGAGCTaGCCGGATGTGTCCTCGATGCACTGCCAGTTCTGCCCAGGCTGC +
Preference number: 6 (lower is better)
Translates to: TVSRSLGPLHLWIRS*PDVSSMHCQFCPGC
Trigger: GCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCTCCGAATCCACAAGTGTAAGGGACCCAGCGACCTGCTCACGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp GCTGTATCCTTCCTCGGAACCTCTGGGACCGAACGGTaGAACACAGGCTTCCCAGCAGCTGTGTGCCCAGCA +
Preference number: 6 (lower is better)
Translates to: AVSFLGTSGTER*NTGFPAAVCPA
Trigger: TGCTGGGCACACAGCTGCTGGGAAGCCTGTGTTCCACCGTTCGGTCCCAGAGGTTCCGAGGAAGGATACAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
ENSMUST00000186405.7
CDS CCA 72 bp CGGACCGTGAGCAGGTCGCTGGGTCCCTTACACTTGTaGATTCGGAGCTTGCCGGATGTGTCCTCGATGCAC +
Preference number: 6 (lower is better)
Translates to: RTVSRSLGPLHL*IRSLPDVSSMH
Trigger: GTGCATCGAGGACACATCCGGCAAGCTCCGAATCCACAAGTGTAAGGGACCCAGCGACCTGCTCACGGTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp TCACCAGCAGCAGCCTGGTGGCCAATGAAGCCCTGGTaGCCCTCATCATGGCGCTTGGCAATGCTCCTTGGT +
Preference number: 6 (lower is better)
Translates to: SPAAAWWPMKPW*PSSWRLAMLLG
Trigger: ACCAAGGAGCATTGCCAAGCGCCATGATGAGGGTCACCAGGGCTTCATTGGCCACCAGGCTGCTGCTGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp AGCTTGCCGGATGTGTCCTCGATGCACTGCCAGTTCTaGCCAGGCTGCTCACAGGCTGTCTGGTATCTGGCT +
Preference number: 6 (lower is better)
Translates to: SLPDVSSMHCQF*PGCSQAVWYLA
Trigger: AGCCAGATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp ACTTGTGGATTCGGAGCTTGCCGGATGTGTCCTCGATaGACTGCCAGTTCTGCCCAGGCTGCTCACAGGCTG +
Preference number: 6 (lower is better)
Translates to: TCGFGACRMCPR*TASSAQAAHRL
Trigger: CAGCCTGTGAGCAGCCTGGGCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCTCCGAATCCACAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp GGTCGCTGGGTCCCTTACACTTGTGGATTCGGAGCTTaGCGGATGTGTCCTCGATGCACTGCCAGTTCTGCC +
Preference number: 6 (lower is better)
Translates to: GRWVPYTCGFGA*RMCPRCTASSA
Trigger: GGCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCTCCGAATCCACAAGTGTAAGGGACCCAGCGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp CGCGAGAGTAGAGGTTGCGTGCATTCTGACGGACCGTaGGCAGGTCGCTGGGTCCCTTACACTTGTGGATTC +
Preference number: 6 (lower is better)
Translates to: RESRGCVHSDGP*AGRWVPYTCGF
Trigger: GAATCCACAAGTGTAAGGGACCCAGCGACCTGCTCACGGTCCGTCAGAATGCACGCAACCTCTACTCTCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp GTCTTTGTCATGCAATCCGCGAGAGTAGAGGTTGCGTaGATTCTGACGGACCGTGAGCAGGTCGCTGGGTCC +
Preference number: 6 (lower is better)
Translates to: VFVMQSARVEVA*ILTDREQVAGS
Trigger: GGACCCAGCGACCTGCTCACGGTCCGTCAGAATGCACGCAACCTCTACTCTCGCGGATTGCATGACAAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp AGGTCGCTGGGTCCCTTACACTTGTGGATTCGGAGCTaGCCGGATGTGTCCTCGATGCACTGCCAGTTCTGC +
Preference number: 6 (lower is better)
Translates to: RSLGPLHLWIRS*PDVSSMHCQFC
Trigger: GCAGAACTGGCAGTGCATCGAGGACACATCCGGCAAGCTCCGAATCCACAAGTGTAAGGGACCCAGCGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp CTCTCCTTCTTCCTCCTCCGATGCTCCTTGAAGAGCTaGAGTTTGCTATCCACCTCCTGGGCAGCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: LSFFLLRCSLKS*SLLSTSWAAAS
Trigger: GGAGGCTGCTGCCCAGGAGGTGGATAGCAAACTTCAGCTCTTCAAGGAGCATCGGAGGAGGAAGAAGGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp AAACTGTGGGGCGGAGTCTTCAGGGCCATGTGGTGCTaGATGGCTGATCACCATCATAATGGGCCTATGGGG +
Preference number: 6 (lower is better)
Translates to: KLWGGVFRAMWC*MADHHHNGPMG
Trigger: CCCCATAGGCCCATTATGATGGTGATCAGCCATGCAGCACCACATGGCCCTGAAGACTCCGCCCCACAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp TGTGGGGCGGAGTCTTCAGGGCCATGTGGTGCTGCATaGCTGATCACCATCATAATGGGCCTATGGGGATAC +
Preference number: 6 (lower is better)
Translates to: CGAESSGPCGAA*LITIIMGLWGY
Trigger: GTATCCCCATAGGCCCATTATGATGGTGATCAGCCATGCAGCACCACATGGCCCTGAAGACTCCGCCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp CTGCCCAGGCTGCTCACAGGCTGTCTGGTATCTGGCTaGCTGGCACAGTTCCTTGACCCTCTCATATTTGGG +
Preference number: 6 (lower is better)
Translates to: LPRLLTGCLVSG*LAQFLDPLIFG
Trigger: CCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGCCTGGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp CTGCCAGTTCTGCCCAGGCTGCTCACAGGCTGTCTGGTATCTGGCTaGCTGGCACAGTTCCTTGACCCTCTCATATTTGGGCAAGTGGTT +
Preference number: 6 (lower is better)
Translates to: LPVLPRLLTGCLVSG*LAQFLDPLIFGQVV
Trigger: AACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGCCTGGGCAGAACTGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp GTCACCCGGACAGTGGCGGGTAACCCCACAGCATTGTaGCTGTCTGCCAACATCTCATTCCTGATGTCACCA +
Preference number: 6 (lower is better)
Translates to: VTRTVAGNPTAL*LSANISFLMSP
Trigger: TGGTGACATCAGGAATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGTTACCCGCCACTGTCCGGGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp AAGCACTTGTGTGTCACCCGGACAGTGGCGGGTAACCCCACAGCATaGTTGCTGTCTGCCAACATCTCATTCCTGATGTCACCAGCAGCA +
Preference number: 6 (lower is better)
Translates to: KHLCVTRTVAGNPTA*LLSANISFLMSPAA
Trigger: TGCTGCTGGTGACATCAGGAATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGTTACCCGCCACTGTCCGGGTGACACACAAGTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp GAAGTTTGCTATCCACCTCCTGGGCAGCAGCCTCCTTaGAGGGGTGAAGGTGACTCTTTAGCTTCTCCTGTC +
Preference number: 6 (lower is better)
Translates to: EVCYPPPGQQPP*RGEGDSLASPV
Trigger: GACAGGAGAAGCTAAAGAGTCACCTTCACCCCTTCAAGGAGGCTGCTGCCCAGGAGGTGGATAGCAAACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TGTGTCACCCGGACAGTGGCGGGTAACCCCACAGCATaGTTGCTGTCTGCCAACATCTCATTCCTGATGTCA +
Preference number: 6 (lower is better)
Translates to: CVTRTVAGNPTA*LLSANISFLMS
Trigger: TGACATCAGGAATGAGATGTTGGCAGACAGCAACAATGCTGTGGGGTTACCCGCCACTGTCCGGGTGACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp ATCAATGTAGGCCTTATGGTCCTTCCACGCTCTGGCTaGCTGGTACAGCTCCCTCTCACAGTGGATTGTGTC +
Preference number: 6 (lower is better)
Translates to: INVGLMVLPRSG*LVQLPLTVDCV
Trigger: GACACAATCCACTGTGAGAGGGAGCTGTACCAGTCAGCCAGAGCGTGGAAGGACCATAAGGCCTACATTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp CCCATAACTGTCCTCAATGTCCAGGCTCTTGGGTCTTaGGTTGCACTGTTTATACCCTTGGCAGCTTCGGAG +
Preference number: 6 (lower is better)
Translates to: PITVLNVQALGS*VALFIPLAASE
Trigger: CTCCGAAGCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGAGGACAGTTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS CAA 72 bp CCTGGTGACCCTCATCATGGCGCTTGGCAATGCTCCTaGGTGGTAACACTTGCAGTTCTTCTTCTTCCAGGT +
Preference number: 6 (lower is better)
Translates to: PGDPHHGAWQCS*VVTLAVLLLPG
Trigger: ACCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAGGAGCATTGCCAAGCGCCATGATGAGGGTCACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TCTTTAGCTCCAATGTCCAGGCTCTTGGGTCTTGGGTaGCACTGTTTATACCCTTGGCAGCTTCGGAGCTCC +
Preference number: 6 (lower is better)
Translates to: SLAPMSRLLGLG*HCLYPWQLRSS
Trigger: GGAGCTCCGAAGCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGGAGCTAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp AGCTCCCTCTCACAGTGGATTGTGTCGTTTGGAAGAATAAAGCACTaGTGTGTCACCCGGACAGTGGCGGGTAACCCCACAGCATTGTTG +
Preference number: 6 (lower is better)
Translates to: SSLSQWIVSFGRIKH*CVTRTVAGNPTALL
Trigger: CAACAATGCTGTGGGGTTACCCGCCACTGTCCGGGTGACACACAAGTGCTTTATTCTTCCAAACGACACAATCCACTGTGAGAGGGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp GGCTGCTCACAGGCTGTCTGGTATCTGGCTTGCTGGCACAGTTCCTaGACCCTCTCATATTTGGGCAAGTGGTTTGACTGTTGGATATTC +
Preference number: 6 (lower is better)
Translates to: GCSQAVWYLACWHSS*TLSYLGKWFDCWIF
Trigger: GAATATCCAACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTGTGAGCAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp GGACTATCGACCCTGGTTCTATGCTTGGACCACGAATaGAGAAAGGCACACGGATGTCAAAGTCGTAGGGCA +
Preference number: 6 (lower is better)
Translates to: GLSTLVLCLDHE*RKAHGCQSRRA
Trigger: TGCCCTACGACTTTGACATCCGTGTGCCTTTCTTCATTCGTGGTCCAAGCATAGAACCAGGGTCGATAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp TCCTCAGGAACTGCCTTTGATTCTTTCTCTGGCTTCTaGTCGAGCGATAGCCAGAGTCCCTACAATGGCACT +
Preference number: 6 (lower is better)
Translates to: SSGTAFDSFSGF*SSDSQSPYNGT
Trigger: AGTGCCATTGTAGGGACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp TCGAATTCAACAGACAGGGACCGAGTCTGCCGGGTGTaGACAAATCTGGGCTTATACTTTGGTGTTCCCTTG +
Preference number: 6 (lower is better)
Translates to: SNSTDRDRVCRV*TNLGLYFGVPL
Trigger: CAAGGGAACACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACTCGGTCCCTGTCTGTTGAATTCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp TCCTTCTTTAGCTCCAATGTCCAGGCTCTTGGGTCTTaGGTTGCACTGTTTATACCCTTGGCAGCTTCGGAG +
Preference number: 6 (lower is better)
Translates to: SFFSSNVQALGS*VALFIPLAASE
Trigger: CTCCGAAGCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGGAGCTAAAGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp CATCCATCCCATAACTGTCCTCAATGTCCAGGCTCTTaGGTCTTGGGTTGCACTGTTTATACCCTTGGCAGC +
Preference number: 6 (lower is better)
Translates to: HPSHNCPQCPGS*VLGCTVYTLGS
Trigger: GCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGAGGACAGTTATGGGATGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS CAA 72 bp CAGGCTGTCTGGTATCTGGCTTGCTGGCACAGTTCCTaGACCCTCTCATATTTGGGCAAGTGGTTTGACTGT +
Preference number: 6 (lower is better)
Translates to: QAVWYLACWHSS*TLSYLGKWFDC
Trigger: ACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TCACAGTGGATTGTGTCGTTTGGAAGAATAAAGCACTaGTGTGTCACCCGGACAGTGGCGGGTAACCCCACA +
Preference number: 6 (lower is better)
Translates to: SQWIVSFGRIKH*CVTRTVAGNPT
Trigger: TGTGGGGTTACCCGCCACTGTCCGGGTGACACACAAGTGCTTTATTCTTCCAAACGACACAATCCACTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TCCCATAACTGTCCTCAATGTCCAGGCTCTTGGGTCTaGGGTTGCACTGTTTATACCCTTGGCAGCTTCGGA +
Preference number: 6 (lower is better)
Translates to: SHNCPQCPGSWV*GCTVYTLGSFG
Trigger: TCCGAAGCTGCCAAGGGTATAAACAGTGCAACCCAAGACCCAAGAGCCTGGACATTGAGGACAGTTATGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185780.2
CDS CAA 90 bp TCTGGGCTTATACTTTGGTGTTCCCTTGTTCCTCAGGAACTGCCTTaGATTCTTTCTCTGGCTTCTGCTCGAGCGATAGCCAGAGTCCCT +
Preference number: 6 (lower is better)
Translates to: SGLILWCSLVPQELP*ILSLASARAIARVP
Trigger: AGGGACTCTGGCTATCGCTCGAGCAGAAGCCAGAGAAAGAATCAAAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTATAAGCCCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp ACAGGGACCGAGTCTGCCGGGTGTGCACAAATCTGGGCTTATACTTaGGTGTTCCCTTGTTCCTCAGGAACTGCCTTTGATTCTTTCTCT +
Preference number: 6 (lower is better)
Translates to: TGTESAGCAQIWAYT*VFPCSSGTAFDSFS
Trigger: AGAGAAAGAATCAAAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACTCGGTCCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp AGGCTGTCTGGTATCTGGCTTGCTGGCACAGTTCCTTaGCCCTCTCATATTTGGGCAAGTGGTTTGACTGTT +
Preference number: 6 (lower is better)
Translates to: RLSGIWLAGTVP*PSHIWASGLTV
Trigger: AACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCAGCAAGCCAGATACCAGACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp GAGTCTGCCGGGTGTGCACAAATCTGGGCTTATACTTaGGTGTTCCCTTGTTCCTCAGGAACTGCCTTTGAT +
Preference number: 6 (lower is better)
Translates to: ESAGCAQIWAYT*VFPCSSGTAFD
Trigger: ATCAAAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp ATTTCACCTTCGAATTCAACAGACAGGGACCGAGTCTaGCGGGTGTGCACAAATCTGGGCTTATACTTTGGT +
Preference number: 6 (lower is better)
Translates to: ISPSNSTDRDRV*RVCTNLGLYFG
Trigger: ACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACTCGGTCCCTGTCTGTTGAATTCGAAGGTGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp TCCCTCTTTCCACTAGGAATGTATCACGCCAGATTTTaGCCTTCTTGTTTGTCCGAAACCTGTTACCCGGCT +
Preference number: 6 (lower is better)
Translates to: SLFPLGMYHARF*PSCLSETCYPA
Trigger: AGCCGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATACATTCCTAGTGGAAAGAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp TGGCACAGTTCCTTGACCCTCTCATATTTGGGCAAGTaGTTTGACTGTTGGATATTCTTGCCGGATTCCTCC +
Preference number: 6 (lower is better)
Translates to: WHSSLTLSYLGK*FDCWIFLPDSS
Trigger: GGAGGAATCCGGCAAGAATATCCAACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTGTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CCA 72 bp AGTCTGCCGGGTGTGCACAAATCTGGGCTTATACTTTaGTGTTCCCTTGTTCCTCAGGAACTGCCTTTGATT +
Preference number: 6 (lower is better)
Translates to: SLPGVHKSGLIL*CSLVPQELPLI
Trigger: AATCAAAGGCAGTTCCTGAGGAACAAGGGAACACCAAAGTATAAGCCCAGATTTGTGCACACCCGGCAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TCCACTAGGAATGTATCACGCCAGATTTTGGCCTTCTaGTTTGTCCGAAACCTGTTACCCGGCTTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: STRNVSRQILAF*FVRNLLPGFSR
Trigger: CCTGGAAAAGCCGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATACATTCCTAGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TTCCCTCTTTCCACTAGGAATGTATCACGCCAGATTTaGGCCTTCTTGTTTGTCCGAAACCTGTTACCCGGC +
Preference number: 6 (lower is better)
Translates to: FPLSTRNVSRQI*AFLFVRNLLPG
Trigger: GCCGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATACATTCCTAGTGGAAAGAGGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp TTCCCTCTTTCCACTAGGAATGTATCACGCCAGATTTTGGCCTTCTaGTTTGTCCGAAACCTGTTACCCGGCTTTTCCAGGTCTAGAAGT +
Preference number: 6 (lower is better)
Translates to: FPLSTRNVSRQILAF*FVRNLLPGFSRSRS
Trigger: ACTTCTAGACCTGGAAAAGCCGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATACATTCCTAGTGGAAAGAGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp CTAGGAATGTATCACGCCAGATTTTGGCCTTCTTGTTaGTCCGAAACCTGTTACCCGGCTTTTCCAGGTCTA +
Preference number: 6 (lower is better)
Translates to: LGMYHARFWPSC*SETCYPAFPGL
Trigger: TAGACCTGGAAAAGCCGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATACATTCCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp CGTAAAAATTTCCCTCTTTCCACTAGGAATGTATCACGCCAGATTTaGGCCTTCTTGTTTGTCCGAAACCTGTTACCCGGCTTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: RKNFPLSTRNVSRQI*AFLFVRNLLPGFSR
Trigger: CCTGGAAAAGCCGGGTAACAGGTTTCGGACAAACAAGAAGGCCAAAATCTGGCGTGATACATTCCTAGTGGAAAGAGGGAAATTTTTACG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp CAGTTCCTTGACCCTCTCATATTTGGGCAAGTGGTTTaGCTGTTGGATATTCTTGCCGGATTCCTCCTTCTT +
Preference number: 6 (lower is better)
Translates to: QFLDPLIFGQVV*LLDILAGFLLL
Trigger: AAGAAGGAGGAATCCGGCAAGAATATCCAACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAAGGAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp TCATGGCGCTTGGCAATGCTCCTTGGTGGTAACACTTaGAGTTCTTCTTCTTCCAGGTTGATGTCATATATT +
Preference number: 6 (lower is better)
Translates to: SWRLAMLLGGNT*SSSSSRLMSYI
Trigger: AATATATGACATCAACCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAGGAGCATTGCCAAGCGCCATGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 90 bp TTGACCCTCTCATATTTGGGCAAGTGGTTTGACTGTTGGATATTCTaGCCGGATTCCTCCTTCTTCCGTAAAAATTTCCCTCTTTCCACT +
Preference number: 6 (lower is better)
Translates to: LTLSYLGKWFDCWIF*PDSSFFRKNFPLST
Trigger: AGTGGAAAGAGGGAAATTTTTACGGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTCAAACCACTTGCCCAAATATGAGAGGGTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS GCA 72 bp CATATTTGGGCAAGTGGTTTGACTGTTGGATATTCTTaGCGGATTCCTCCTTCTTCCGTAAAAATTTCCCTC +
Preference number: 6 (lower is better)
Translates to: HIWASGLTVGYS*RIPPSSVKISL
Trigger: GAGGGAAATTTTTACGGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTCAAACCACTTGCCCAAATATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp TCATATTTGGGCAAGTGGTTTGACTGTTGGATATTCTaGCCGGATTCCTCCTTCTTCCGTAAAAATTTCCCT +
Preference number: 6 (lower is better)
Translates to: SYLGKWFDCWIF*PDSSFFRKNFP
Trigger: AGGGAAATTTTTACGGAAGAAGGAGGAATCCGGCAAGAATATCCAACAGTCAAACCACTTGCCCAAATATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS CAA 72 bp CTTGGTGGTAACACTTGCAGTTCTTCTTCTTCCAGGTaGATGTCATATATTTCACCTTCGAATTCAACAGAC +
Preference number: 6 (lower is better)
Translates to: LGGNTCSSSSSR*MSYISPSNSTD
Trigger: GTCTGTTGAATTCGAAGGTGAAATATATGACATCAACCTGGAAGAAGAAGAACTGCAAGTGTTACCACCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7
CDS TCA 72 bp AGTAATCCTTTGCATAATCAAATCCATGCTTCTCCTTaGTGCCGTTGCGACAAACAGTGTAATTATAGAAAC +
Preference number: 6 (lower is better)
Translates to: SNPLHNQIHASP*CRCDKQCNYRN
Trigger: GTTTCTATAATTACACTGTTTGTCGCAACGGCATCAAGGAGAAGCATGGATTTGATTATGCAAAGGATTACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000088585.10
ENSMUST00000177608.8
ENSMUST00000180062.8
ENSMUST00000186051.7