Pregenerated sensors for SUDS3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066900Ensembl transcript IDs: ENSMUST00000086471.12, ENSMUST00000166397.3
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCAGTACTGCAGTGGGTCCAGCTGCAAGAGCGAGGCACCCACCTTaGCACCGCAGCTATGGGGAAGGGAGAACCCACATCACAGTAGGG | + |
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Preference number: 1 (lower is better) Translates to: SSTAVGPAARARHPP*HRSYGEGRTHITVG Trigger: CCCTACTGTGATGTGGGTTCTCCCTTCCCCATAGCTGCGGTGGCAAGGTGGGTGCCTCGCTCTTGCAGCTGGACCCACTGCAGTACTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 90 bp | GGCCATGGCAGGTGGCTTCGCTGGGGCTCAAGCAGCACGCAGACTTaGCAGCTGCAGCATGACAGAGCTCTCCTTGTCACTAACGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: GHGRWLRWGSSSTQT*QLQHDRALLVTNVG Trigger: TCCCACGTTAGTGACAAGGAGAGCTCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCTGCCATGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 90 bp | AATAAGAGGCCCAGGGAGCAAGAGGGCCATGGCAGGTGGCTTCGCTaGGGCTCAAGCAGCACGCAGACTTGGCAGCTGCAGCATGACAGA | + |
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Preference number: 1 (lower is better) Translates to: NKRPREQEGHGRWLR*GSSSTQTWQLQHDR Trigger: TCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCTGCCATGGCCCTCTTGCTCCCTGGGCCTCTTATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 90 bp | CATTTCTCCAATAAGAGGCCCAGGGAGCAAGAGGGCCATGGCAGGTaGCTTCGCTGGGGCTCAAGCAGCACGCAGACTTGGCAGCTGCAG | + |
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Preference number: 1 (lower is better) Translates to: HFSNKRPREQEGHGR*LRWGSSSTQTWQLQ Trigger: CTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCTGCCATGGCCCTCTTGCTCCCTGGGCCTCTTATTGGAGAAATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR GCA 90 bp | GCAGGTGGCTTCGCTGGGGCTCAAGCAGCACGCAGACTTGGCAGCTaGAGCATGACAGAGCTCTCCTTGTCACTAACGTGGGACAAACCT | + |
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Preference number: 1 (lower is better) Translates to: AGGFAGAQAARRLGS*SMTELSLSLTWDKP Trigger: AGGTTTGTCCCACGTTAGTGACAAGGAGAGCTCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR GCA 90 bp | TCATTTATTTCTCCAAGAAAGTGGAGCCAGGAGAACCCTGCCCCATaGTTCCGGGCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGC | + |
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Preference number: 1 (lower is better) Translates to: SFISPRKWSQENPAP*FRAQLGRQAHNLPS Trigger: GCTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTGGAGAAATAAATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR CCA 90 bp | AACCCCTCTACTCCGAAAGCAAGAGTCTCTCTGGTGACTGAGTTCTaGAAGAGGCCGAGGCAGGAGAGAGCGGCACAGAGATGGAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: NPSTPKARVSLVTEF*KRPRQERAAQRWRW Trigger: CCACCTCCATCTCTGTGCCGCTCTCTCCTGCCTCGGCCTCTTCCAGAACTCAGTCACCAGAGAGACTCTTGCTTTCGGAGTAGAGGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR TCA 90 bp | GGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGGCAGGCACTTCAAGGAAGGTGGGTaGACCCCTCTACTCCGAAAG | + |
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Preference number: 2 (lower is better) Translates to: GARRTLPHASGPNSAGRHFKEGG*TPLLRK Trigger: CTTTCGGAGTAGAGGGGTTCACCCACCTTCCTTGAA...GTGCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR CCA 90 bp | CAAGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGCACAGAGATGGAGGTaGCGGCCATGTGAGCGCCCT | + |
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Preference number: 2 (lower is better) Translates to: QESGARRTLPHASGPNSAAQRWR*RPCERP Trigger: AGGGCGCTCACATGGCCGCCACCTCCATCTCTGTGC...TGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR CAA 90 bp | GTCCAGTACTGCAGTGGGTCCAGCTGCAAGAGCGAGGCACCCACCTaGCCACCGCAGCTATGGGGAAGGGAGAACCCACATCACAGTAGG | + |
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Preference number: 2 (lower is better) Translates to: VQYCSGSSCKSEAPT*PPQLWGRENPHHSR Trigger: CCTACTGTGATGTGGGTTCTCCCTTCCCCATAGCTGCGGTGGCAAGGTGGGTGCCTCGCTCTTGCAGCTGGACCCACTGCAGTACTGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR TCA 90 bp | AGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGGCAAGAGTCTCTCTGGTaGCTGAGTTCTGGAAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: RKWSQENPAPCFRAQLGRQESLW*LSSGRG Trigger: GCCTCTTCCAGAACTCAGTCACCAGAGAGACTCTTG...CCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR CCA 90 bp | GCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGCAGATTAGGCGGGAAAGCACTGGTGACTGAGTTCTaGAAGAGGCCGAGGCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: AQLGRQAHNLPSRLGGKALVTEF*KRPRQE Trigger: CTCCTGCCTCGGCCTCTTCCAGAACTCAGTCACCAG...TGCTTTCCCGCCTAATCTGCTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR TCA 90 bp | ATGCTTCCGGGCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGCAGATTAGGTTCAAGGAAGGTGGGTaGACCCCTCTACTCCGAAAG | + |
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Preference number: 2 (lower is better) Translates to: MLPGPTRQAGTQSAQQIRFKEGG*TPLLRK Trigger: CTTTCGGAGTAGAGGGGTTCACCCACCTTCCTTGAA...CCTAATCTGCTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGCCCGGAAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR GCA 90 bp | AGGCAGGCACACAATCTGCCCAGCAGATTAGGCGGGAAAGCATACCTGCTGCTCCTGAAGACTCCACAGTaGTCCCCATGTCCCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: RQAHNLPSRLGGKAYLLLLKTPQ*SPCPRP Trigger: TGGCCTGGGACATGGGGAGCACTGTGGAGTCTTCAG...GAGCAGCAGGTATGCTTTCCCGCCTAATCTGCTGGGCAGATTGTGTGCCTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR CCA 90 bp | GGCACACAATCTGCCCAGCAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAAGCACAGAGATGGAGGTaGCGGCCATGTGAGCGCCCT | + |
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Preference number: 2 (lower is better) Translates to: GTQSAQQIRRESIPAALQAQRWR*RPCERP Trigger: AGGGCGCTCACATGGCCGCCACCTCCATCTCTGTGC...TTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTGCTGGGCAGATTGTGTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR CCA 90 bp | GGGGCTCAAGCAGCACGCAGACTTGGCAGCTGCAGCATGACAGAGCTCTCCTTGAACCTCGGGGGAGGCTaGAGGTTCTTCGATATTGAG | + |
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Preference number: 2 (lower is better) Translates to: GAQAARRLGSCSMTELSLNLGGG*RFFDIE Trigger: CTCAATATCGAAGAACCTCCAGCCTCCCCCGAGGTT...CAAGGAGAGCTCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR GCA 90 bp | AGTCATTTCTCCAATAAGAGGCCCAGGGAGCAAGAGGGCCATGGCAGGTGGCTTCTGAAGACTCCACAGTaGTCCCCATGTCCCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: SHFSNKRPREQEGHGRWLLKTPQ*SPCPRP Trigger: TGGCCTGGGACATGGGGAGCACTGTGGAGTCTTCAG...AAGCCACCTGCCATGGCCCTCTTGCTCCCTGGGCCTCTTATTGGAGAAATGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR CCA 90 bp | TCCGTTGGCTGCAGTGTCCAGGGTGAAGACACTCACGCAGTCATTGGAGTAGAAAGAGCGGCACAGAGATaGAGGTGGCGGCCATGTGAG | + |
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Preference number: 2 (lower is better) Translates to: SVGCSVQGEDTHAVIGVERAAQR*RWRPCE Trigger: CTCACATGGCCGCCACCTCCATCTCTGTGCCGCTCT...TTCTACTCCAATGACTGCGTGAGTGTCTTCACCCTGGACACTGCAGCCAACGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR TCA 90 bp | ATCTCCTGCTCAGCCACACCAGTCATTTCTCCAATAAGAGGCCCAGGGAGCAAGTTGGCAGCTGCAGCATaGCAGAGCTCTCCTTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: ISCSATPVISPIRGPGSKLAAAA*QSSPCH Trigger: GTGACAAGGAGAGCTCTGTCATGCTGCAGCTGCCAA...CTTGCTCCCTGGGCCTCTTATTGGAGAAATGACTGGTGTGGCTGAGCAGGAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR TCA 90 bp | ATCTCCTGCTCAGCCACACCAGTCATTTCTCCAATAAGAGGCCCAGGGAGCAAGCAAGAGTCTCTCTGGTaGCTGAGTTCTGGAAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: ISCSATPVISPIRGPGSKQESLW*LSSGRG Trigger: GCCTCTTCCAGAACTCAGTCACCAGAGAGACTCTTG...CTTGCTCCCTGGGCCTCTTATTGGAGAAATGACTGGTGTGGCTGAGCAGGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR CCA 90 bp | ATTTATTTCTCCAAGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCGGAATTCAAGGAAGGTaGGTGAACCCCTCTACTCCG | + |
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Preference number: 2 (lower is better) Translates to: IYFSKKVEPGEPCPMLPGGIQGR*VNPSTP Trigger: CGGAGTAGAGGGGTTCACCCACCTTCCTTGAATTCC...GCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTGGAGAAATAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGCGGCCATAAACAAAGTGATTCTGTACAGTCTTCCGTGGAGGCACACGACTAGCAGCACGCAGACTTaGCAGCTGCAGCATGACAGA | + |
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Preference number: 2 (lower is better) Translates to: RAAINKVILYSLPWRHTTSSTQT*QLQHDR Trigger: TCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCT...AGTCGTGTGCCTCCACGGAAGACTGTACAGAATCACTTTGTTTATGGCCGCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR CCA 90 bp | CAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAAAGGCCTAAAGATAATTGTAGAGCGGCACAGAGATaGAGGTGGCGGCCATGTGAG | + |
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Preference number: 2 (lower is better) Translates to: QIRRESIPAALQRPKDNCRAAQR*RWRPCE Trigger: CTCACATGGCCGCCACCTCCATCTCTGTGCCGCTCT...ACAATTATCTTTAGGCCTTTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR-3UTR CCA 90 bp | GACCTCTGGAATTCCCACTTCTTCCACCCTGAACAAGGACGGGCATACCTAAATGGAATTCAAGGAAGGTaGGTGAACCCCTCTACTCCG | + |
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Preference number: 2 (lower is better) Translates to: DLWNSHFFHPEQGRAYLNGIQGR*VNPSTP Trigger: CGGAGTAGAGGGGTTCACCCACCTTCCTTGAATTCC...ATTTAGGTATGCCCGTCCTTGTTCAGGGTGGAAGAAGTGGGAATTCCAGAGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR-3UTR CCA 90 bp | AGAGCGGCCATAAACAAAGTGATTCTGTACAGTCTTCCGTGGAGGCACACGACTATTTCTCCAAGAAAGTaGAGCCAGGAGAACCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: RAAINKVILYSLPWRHTTISPRK*SQENPA Trigger: GGCAGGGTTCTCCTGGCTCCACTTTCTTGGAGAAAT...AGTCGTGTGCCTCCACGGAAGACTGTACAGAATCACTTTGTTTATGGCCGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | CCCAGGGAGCAAGAGGGCCATGGCAGGTGGCTTCGCTaGGGCTCAAGCAGCACGCAGACTTGGCAGCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: PREQEGHGRWLR*GSSSTQTWQLQ Trigger: CTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCTGCCATGGCCCTCTTGCTCCCTGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR GCA 72 bp | GCAGTGGGTCCAGCTGCAAGAGCGAGGCACCCACCTTaGCACCGCAGCTATGGGGAAGGGAGAACCCACATC | + |
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Preference number: 3 (lower is better) Translates to: AVGPAARARHPP*HRSYGEGRTHI Trigger: GATGTGGGTTCTCCCTTCCCCATAGCTGCGGTGGCAAGGTGGGTGCCTCGCTCTTGCAGCTGGACCCACTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | AATAAGAGGCCCAGGGAGCAAGAGGGCCATGGCAGGTaGCTTCGCTGGGGCTCAAGCAGCACGCAGACTTGG | + |
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Preference number: 3 (lower is better) Translates to: NKRPREQEGHGR*LRWGSSSTQTW Trigger: CCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCTGCCATGGCCCTCTTGCTCCCTGGGCCTCTTATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | TGCAAGAGCGAGGCACCCACCTTGCCACCGCAGCTATaGGGAAGGGAGAACCCACATCACAGTAGGGCACGT | + |
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Preference number: 3 (lower is better) Translates to: CKSEAPTLPPQL*GRENPHHSRAR Trigger: ACGTGCCCTACTGTGATGTGGGTTCTCCCTTCCCCATAGCTGCGGTGGCAAGGTGGGTGCCTCGCTCTTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR TCA 72 bp | CCCCTCTACTCCGAAAGCAAGAGTCTCTCTGGTGACTaGGTTCTGGAAGAGGCCGAGGCAGGAGAGAGCGGC | + |
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Preference number: 3 (lower is better) Translates to: PLYSESKSLSGD*VLEEAEAGESG Trigger: GCCGCTCTCTCCTGCCTCGGCCTCTTCCAGAACTCAGTCACCAGAGAGACTCTTGCTTTCGGAGTAGAGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR TCA 72 bp | ACCCCCAGCCCCATCCGTTGGCTGCAGTGTCCAGGGTaGAGACACTCACGCAGTCATTGGAGTAGAAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: TPSPIRWLQCPG*RHSRSHWSRSP Trigger: TGGGCTTCTACTCCAATGACTGCGTGAGTGTCTTCACCCTGGACACTGCAGCCAACGGATGGGGCTGGGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | AGGTGGCTTCGCTGGGGCTCAAGCAGCACGCAGACTTaGCAGCTGCAGCATGACAGAGCTCTCCTTGTCACT | + |
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Preference number: 3 (lower is better) Translates to: RWLRWGSSSTQT*QLQHDRALLVT Trigger: AGTGACAAGGAGAGCTCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAAGCCACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | ACAGTCGCTCGGATCCGCTTCTTCTCTCGTGGCCTGTaGCGGCTAGAGCAGAAGGAATCTCCTGCTCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: TVARIRFFSRGL*RLEQKESPAQP Trigger: TGGCTGAGCAGGAGATTCCTTCTGCTCTAGCCGCCACAGGCCACGAGAGAAGAAGCGGATCCGAGCGACTGT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR GCA 72 bp | ATTTATTTCTCCAAGAAAGTGGAGCCAGGAGAACCCTaGCCCATGCTTCCGGGCCCAACTCGGCAGGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: IYFSKKVEPGEP*PMLPGPTRQAG Trigger: GCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTGGAGAAATAAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| 3UTR GCA 72 bp | TTCGCTGGGGCTCAAGCAGCACGCAGACTTGGCAGCTaGAGCATGACAGAGCTCTCCTTGTCACTAACGTGG | + |
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Preference number: 3 (lower is better) Translates to: FAGAQAARRLGS*SMTELSLSLTW Trigger: CCACGTTAGTGACAAGGAGAGCTCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCCAGCGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | CCACTGGGAGCCAGAGGAGTTACAGACGGAGACCTCTaGAATTCCCACTTCTTCCACCCTGAACAAGGACGG | + |
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Preference number: 3 (lower is better) Translates to: PLGARGVTDGDL*NSHFFHPEQGR Trigger: CCGTCCTTGTTCAGGGTGGAAGAAGTGGGAATTCCAGAGGTCTCCGTCTGTAACTCCTCTGGCTCCCAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | TCTGTACAGTCTTCCGTGGAGGCACACGACTTCCTGTaGCTCCCCACACCCACAGCAAAACAAGGTGTGGAC | + |
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Preference number: 3 (lower is better) Translates to: SVQSSVEAHDFL*LPTPTAKQGVD Trigger: GTCCACACCTTGTTTTGCTGTGGGTGTGGGGAGCCACAGGAAGTCGTGTGCCTCCACGGAAGACTGTACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR GCA 72 bp | TCGTGGCCTGTGGCGGCTAGAGCAGAAGGAATCTCCTaGTCAGCCACACCAGTCATTTCTCCAATAAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: SWPVAARAEGIS*SATPVISPIRG Trigger: GCCTCTTATTGGAGAAATGACTGGTGTGGCTGAGCAGGAGATTCCTTCTGCTCTAGCCGCCACAGGCCACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | GCGGCCATAAACAAAGTGATTCTGTACAGTCTTCCGTaGAGGCACACGACTTCCTGTGGCTCCCCACACCCA | + |
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Preference number: 3 (lower is better) Translates to: AAINKVILYSLP*RHTTSCGSPHP Trigger: TGGGTGTGGGGAGCCACAGGAAGTCGTGTGCCTCCACGGAAGACTGTACAGAATCACTTTGTTTATGGCCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| 3UTR CCA 72 bp | ATAAACATTGTTTATCCTGTTTTCTTAAGAATCCAATaGGAGAGCGGCCATAAACAAAGTGATTCTGTACAG | + |
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Preference number: 3 (lower is better) Translates to: INIVYPVFLRIQ*ESGHKQSDSVQ Trigger: CTGTACAGAATCACTTTGTTTATGGCCGCTCTCCCATTGGATTCTTAAGAAAACAGGATAAACAATGTTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| CDS-3UTR GCA 90 bp | CCCCATGCTTCCGGGCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGCAGATCTGGAGGAAGAGCTCTaGATTCCGGATCCGCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: PHASGPNSAGRHTICPADLEEEL*IPDPLS Trigger: CGAGAGCGGATCCGGAATGCAGAGCTCTTCCTCCAG...ATCTGCTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CCA 90 bp | AGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGGCGAGCCTCAAACCTCTaGGCTGGAGACTCTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: RKWSQENPAPCFRAQLGRRASNL*AGDSAG Trigger: ACCTGCAGAGTCTCCAGCCCAGAGGTTTGAGGCTCG...CCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR TCA 90 bp | TCCAAGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGTGGAGCGTACCTTCCTaGAGCTGTTGCAGCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SKKVEPGEPCPMLPGPTRWSVPS*SCCSCL Trigger: GAGGCAGCTGCAACAGCTTCAGGAAGGTACGCTCCA...CCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR TCA 90 bp | CCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGCAGTCAGCTCCATGGTaGGTTTCTCGTTCTCGATCA | + |
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Preference number: 4 (lower is better) Translates to: PCPMLPGPTRQAGTQSAQQSAPW*VSRSRS Trigger: TGATCGAGAACGAGAAACTCACCATGGAGCTGACTG...CTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR TCA 90 bp | AGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGGTGGCTCCCACTGAGCTaGTCACACAGCTCAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: RKWSQENPAPCFRAQLGRWLPLS*SHSSAS Trigger: AGAAGCTGAGCTGTGTGATCAGCTCAGTGGGAGCCA...CCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CCA 90 bp | TCCAAGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCGAGCCTCAAACCTCTaGGCTGGAGACTCTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SKKVEPGEPCPMLPGPTRRASNL*AGDSAG Trigger: ACCTGCAGAGTCTCCAGCCCAGAGGTTTGAGGCTCG...CCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR GCA 90 bp | GGGGCTCAAGCAGCACGCAGACTTGGCAGCTGCAGCATGACAGAGCTCTCCTTGCTGGAGGAAGAGCTCTaGATTCCGGATCCGCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: GAQAARRLGSCSMTELSLLEEEL*IPDPLS Trigger: CGAGAGCGGATCCGGAATGCAGAGCTCTTCCTCCAG...CAAGGAGAGCTCTGTCATGCTGCAGCTGCCAAGTCTGCGTGCTGCTTGAGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| CDS-3UTR TCA 90 bp | AAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCCAACTCGGCAGGCAAGCTGGTCTCTTGGGTaGCTTAAGCTTGTTCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: KVEPGEPCPMLPGPTRQASWSLG*LKLVQR Trigger: ACGCTGAACAAGCTTAAGTCACCCAAGAGACCAGCT...TGCCTGCCGAGTTGGGCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CCA 90 bp | CCCCATGCTTCCGGGCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGCAGATTGTTCCGTTTCCAGCTaGAGGAAGAGCTCTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: PHASGPNSAGRHTICPADCSVSS*RKSSAF Trigger: GAATGCAGAGCTCTTCCTCCAGCTGGAAACGGAACA...ATCTGCTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR TCA 90 bp | GGCACACAATCTGCCCAGCAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAACTCGTTGGCTCCCACTaGGCTGATCACACAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: GTQSAQQIRRESIPAALQLVGSH*ADHTAQ Trigger: CTGAGCTGTGTGATCAGCTCAGTGGGAGCCAACGAG...TTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTGCTGGGCAGATTGTGTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CCA 90 bp | CTCGGCAGGCAGGCACACAATCTGCCCAGCAGATTAGGCGGGAAAGCATACCTGTGTTCCGTTTCCAGCTaGAGGAAGAGCTCTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: LGRQAHNLPSRLGGKAYLCSVSS*RKSSAF Trigger: GAATGCAGAGCTCTTCCTCCAGCTGGAAACGGAACA...CAGGTATGCTTTCCCGCCTAATCTGCTGGGCAGATTGTGTGCCTGCCTGCCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR TCA 90 bp | TGGGGAAGGGAGAACCCACATCACAGTAGGGCACGTGATGAGATCCTTGTAGCCCAGTCAGCTCCATGGTaGGTTTCTCGTTCTCGATCA | + |
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Preference number: 4 (lower is better) Translates to: WGRENPHHSRARDEILVAQSAPW*VSRSRS Trigger: TGATCGAGAACGAGAAACTCACCATGGAGCTGACTG...GGCTACAAGGATCTCATCACGTGCCCTACTGTGATGTGGGTTCTCCCTTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| CDS-3UTR TCA 90 bp | CAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAAAGGCCTAAAGATAATTGTCTCGTTGGCTCCCACTaGGCTGATCACACAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: QIRRESIPAALQRPKDNCLVGSH*ADHTAQ Trigger: CTGAGCTGTGTGATCAGCTCAGTGGGAGCCAACGAG...ACAATTATCTTTAGGCCTTTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR TCA 90 bp | TGGAGTAGAAGCCCAAGGCAGATAGATGTTCTATATCATTTATTTCTCCAAGAATGGAGCGTACCTTCCTaGAGCTGTTGCAGCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: WSRSPRQIDVLYHLFLQEWSVPS*SCCSCL Trigger: GAGGCAGCTGCAACAGCTTCAGGAAGGTACGCTCCA...TTCTTGGAGAAATAAATGATATAGAACATCTATCTGCCTTGGGCTTCTACTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| CDS-3UTR CAA 90 bp | CTGCCCCATGCTTCCGGGCCCAACTCGGCAGGCAGGCACACAATCTGCCCAGCAGCCGGTTTTCTCCTCTaGTCTGGAATGGGGACAGGA | + |
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Preference number: 5 (lower is better) Translates to: LPHASGPNSAGRHTICPAAGFLL*SGMGTG Trigger: TCCTGTCCCCATTCCAGACAAGAGGAGAAAACCGGC...TGCTGGGCAGATTGTGTGCCTGCCTGCCGAGTTGGGCCCGGAAGCATGGGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CAA 90 bp | CCAGTCATTTCTCCAATAAGAGGCCCAGGGAGCAAGAGGGCCATGGCAGGTGGCCTCACCCAGATCTCGTaGGCTCCCACTGAGCTGATC | + |
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Preference number: 5 (lower is better) Translates to: PVISPIRGPGSKRAMAGGLTQIS*APTELI Trigger: GATCAGCTCAGTGGGAGCCAACGAGATCTGGGTGAG...GCCACCTGCCATGGCCCTCTTGCTCCCTGGGCCTCTTATTGGAGAAATGACTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| CDS-3UTR CAA 90 bp | ATTTATTTCTCCAAGAAAGTGGAGCCAGGAGAACCCTGCCCCATGCTTCCGGGCCTCACCCAGATCTCGTaGGCTCCCACTGAGCTGATC | + |
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Preference number: 5 (lower is better) Translates to: IYFSKKVEPGEPCPMLPGLTQIS*APTELI Trigger: GATCAGCTCAGTGGGAGCCAACGAGATCTGGGTGAG...GCCCGGAAGCATGGGGCAGGGTTCTCCTGGCTCCACTTTCTTGGAGAAATAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CAA 90 bp | AGTCATTTCTCCAATAAGAGGCCCAGGGAGCAAGAGGGCCATGGCAGGTGGCTTGGGGAAGCTGGTCTCTaGGGTGACTTAAGCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: SHFSNKRPREQEGHGRWLGEAGL*GDLSLF Trigger: GAACAAGCTTAAGTCACCCAAGAGACCAGCTTCCCC...AAGCCACCTGCCATGGCCCTCTTGCTCCCTGGGCCTCTTATTGGAGAAATGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086471.12 |
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| CDS GCA 90 bp | GTAATTCCTCTCCACCTGTTCCGTTTCCAGCTGGAGGAAGAGCTCTaGATTCCGGATCCGCTCTCGGTACTGCTGGTCCAGTTTCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: VIPLHLFRFQLEEEL*IPDPLSVLLVQFLH Trigger: ATGAAGAAACTGGACCAGCAGTACCGAGAGCGGATCCGGAATGCAGAGCTCTTCCTCCAGCTGGAAACGGAACAGGTGGAGAGGAATTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CAA 90 bp | GGCACACAATCTGCCCAGCAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAAACCTTCCTGAAGCTGTaGCAGCTGCCTCTTCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: GTQSAQQIRRESIPAALQTFLKL*QLPLQR Trigger: TCTTTGAAGAGGCAGCTGCAACAGCTTCAGGAAGGT...TTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTGCTGGGCAGATTGTGTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CAA 90 bp | CAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAAAGGCCTAAAGATAATTGTGCCGGTTTTCTCCTCTaGTCTGGAATGGGGACAGGA | + |
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Preference number: 5 (lower is better) Translates to: QIRRESIPAALQRPKDNCAGFLL*SGMGTG Trigger: TCCTGTCCCCATTCCAGACAAGAGGAGAAAACCGGC...ACAATTATCTTTAGGCCTTTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS-3UTR CAA 90 bp | CAGATTAGGCGGGAAAGCATACCTGCTGCTCTTCAAAGGCCTAAAGATAATTGTACCTTCCTGAAGCTGTaGCAGCTGCCTCTTCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: QIRRESIPAALQRPKDNCTFLKL*QLPLQR Trigger: TCTTTGAAGAGGCAGCTGCAACAGCTTCAGGAAGGT...ACAATTATCTTTAGGCCTTTGAAGAGCAGCAGGTATGCTTTCCCGCCTAATCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS GCA 72 bp | CTCCACCTGTTCCGTTTCCAGCTGGAGGAAGAGCTCTaGATTCCGGATCCGCTCTCGGTACTGCTGGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LHLFRFQLEEEL*IPDPLSVLLVQ Trigger: CTGGACCAGCAGTACCGAGAGCGGATCCGGAATGCAGAGCTCTTCCTCCAGCTGGAAACGGAACAGGTGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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| CDS CAA 72 bp | GAGGATGGGGAAGCTGGTCTCTTGGGTGACTTAAGCTaGTTCAGCGTCCTCAGGTCCTCCATGATCTGCTCG | + |
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Preference number: 6 (lower is better) Translates to: EDGEAGLLGDLS*FSVLRSSMICS Trigger: CGAGCAGATCATGGAGGACCTGAGGACGCTGAACAAGCTTAAGTCACCCAAGAGACCAGCTTCCCCATCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086471.12 ENSMUST00000166397.3 |
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