Pregenerated sensors for SUCNR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027762Ensembl transcript IDs: ENSMUST00000029326.6
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCATACTCTGGGTATAACCTAAAATCAGAACAGAGAGCTGCCTTCTaGTTCATGTGGACCCAGCTTGTACTCCAGCCCTGGGGGTTGGAG | + |
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Preference number: 1 (lower is better) Translates to: PYSGYNLKSEQRAAF*FMWTQLVLQPWGLE Trigger: CTCCAACCCCCAGGGCTGGAGTACAAGCTGGGTCCACATGAATCAGAAGGCAGCTCTCTGTTCTGATTTTAGGTTATACCCAGAGTATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| 3UTR-3UTR TCA 90 bp | CTTATCGACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTCTCATTTTGGCTGAGTaGAGACCTGCATCCAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: LIDLTNDEMHSAFATSYLLILAE*RPASSS Trigger: GCTGCTGGATGCAGGTCTTCACTCAGCCAAAATGAG...AAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTCGATAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| 3UTR-3UTR CCA 90 bp | CTTATCGACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTTCAAGTGTCTCATTTTaGCTGAGTGAAGACCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: LIDLTNDEMHSAFATSYLSSVSF*LSEDLH Trigger: ATGCAGGTCTTCACTCAGCCAAAATGAGACACTTGA...AAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTCGATAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| 3UTR-3UTR TCA 90 bp | CTTATCGACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTTGTTCAGTTCTTAAGTaGAGATGTCAATGCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: LIDLTNDEMHSAFATSYLCSVLK*RCQCFL Trigger: GAGAAAGCATTGACATCTTCACTTAAGAACTGAACA...AAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTCGATAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| 3UTR TCA 72 bp | GGGTATAACCTAAAATCAGAACAGAGAGCTGCCTTCTaGTTCATGTGGACCCAGCTTGTACTCCAGCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GYNLKSEQRAAF*FMWTQLVLQPW Trigger: CCAGGGCTGGAGTACAAGCTGGGTCCACATGAATCAGAAGGCAGCTCTCTGTTCTGATTTTAGGTTATACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| 3UTR-3UTR CAA 90 bp | GACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGTATTCTCATGTGGACCCAGCTaGTACTCCAGCCCTGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: DLTNDEMHSAFATSYLVFSCGPS*YSSPGG Trigger: ACCCCCAGGGCTGGAGTACAAGCTGGGTCCACATGA...GAATACAAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| 3UTR TCA 72 bp | AAAAATAAGACTATTTCAGAAACACGCTTATCGACCTaGCCAATGATGAAATGCATTCAGCATTTGCAACTA | + |
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Preference number: 3 (lower is better) Translates to: KNKTISETRLST*PMMKCIQHLQL Trigger: TAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTCGATAAGCGTGTTTCTGAAATAGTCTTATTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTCAGTGGCAGGGCAGTTaGTTGCTGCTGGCTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGQWQGS*LLLAPP Trigger: AGGAGGAGCCAGCAGCAAGCAACTGCCCTGCCACTG...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR TCA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTTGTAATGGTCTCCCATaGGGAAGTAGAAGATGGGAT | + |
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Preference number: 4 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGCNGLP*GSRRWD Trigger: ATCCCATCTTCTACTTCCTCATGGGAGACCATTACA...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTAACTTGCATAGTCGATaGAGTTACTGCCCTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGNLHSR*SYCPLL Trigger: AAGAAGAGGGCAGTAACTGCATCGACTATGCAAGTT...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | TGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTTTACTTAGTAGGGCAGTTGCTTGCTaGTGGCTCCTCCTCTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: WGLEDGGKLKPRNGGLLSRAVAC*WLLLFK Trigger: CTTAAAGAGGAGGAGCCAGCAGCAAGCAACTGCCCT...ACTAAGTAAACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CCA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTAGGTCCCCTTATCATTaGCATAACTCTTTATCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGRSPYH*HNSLSG Trigger: TCCTGATAAAGAGTTATGCCAATGATAAGGGGACCT...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CCA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTACTGCCCTCTTCTTTTaGGACAGAATTGATGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGTALFF*DRIDES Trigger: ACTTTCATCAATTCTGTCCCAAAAGAAGAGGGCAGT...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | CTTATCGACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGGCAGGGCAGTTGCTTaGTGCTGGCTCCTCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LIDLTNDEMHSAFATSYLGRAVA*CWLLLF Trigger: AAAGAGGAGGAGCCAGCAGCAAGCAACTGCCCTGCC...AAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTCGATAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR TCA 90 bp | AACTCAACTGCACAGCACTGTTTATCAAGTGTCTCATTTTGGCTGAGTGAAGACAGCCAAACACCACAGTaGCATTCCCAAGCAGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: NSTAQHCLSSVSFWLSEDSQTPQ*HSQAVQ Trigger: TTGGACTGCTTGGGAATGTCACTGTGGTGTTTGGCT...GTCTTCACTCAGCCAAAATGAGACACTTGATAAACAGTGCTGTGCAGTTGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CCA 90 bp | TGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTTTACTTAGTAACTCTTTATCAGGATaGGAAGGGTGCACAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: WGLEDGGKLKPRNGGLLSNSLSG*EGCTGK Trigger: CTTTCCTGTGCACCCTTCCCATCCTGATAAAGAGTT...ACTAAGTAAACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CCA 90 bp | AACTCAACTGCACAGCACTGTTTATCAAGTGTCTCATTTTGGCTGAGTGAAGACGCAGTTGCTTGCTGCTaGCTCCTCCTCTTTAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: NSTAQHCLSSVSFWLSEDAVACC*LLLFKK Trigger: CTTCTTAAAGAGGAGGAGCCAGCAGCAAGCAACTGC...GTCTTCACTCAGCCAAAATGAGACACTTGATAAACAGTGCTGTGCAGTTGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | CTTATCGACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTAGAGAAGATCACAACTaGCAGGACCACCAGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: LIDLTNDEMHSAFATSYLREDHN*QDHQAL Trigger: CAACGCCTGGTGGTCCTGGCAGTTGTGATCTTCTCT...AAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTCGATAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CCA 90 bp | ATGGTGGTTTACTTAGTTAAAACTCAACTGCACAGCACTGTTTATCAAGTGTCTTTGGGGTTTGTCCAGTaGCAGGGCAGTTGCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: MVVYLVKTQLHSTVYQVSLGFVQ*QGSCLL Trigger: CAGCAAGCAACTGCCCTGCCACTGGACAAACCCCAA...AGACACTTGATAAACAGTGCTGTGCAGTTGAGTTTTAACTAAGTAAACCACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR TCA 90 bp | GACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGTATTCGGAAAGGGTACTTCATaGGCAGATATCGGTCCATGC | + |
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Preference number: 4 (lower is better) Translates to: DLTNDEMHSAFATSYLVFGKGTS*ADIGPC Trigger: GCATGGACCGATATCTGCTCATGAAGTACCCTTTCC...GAATACAAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR TCA 90 bp | GACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGTATTCGGCAGAGGCTGTAAATaGGATTGTGTTCAGGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: DLTNDEMHSAFATSYLVFGRGCK*DCVQGF Trigger: GAAACCCTGAACACAATCTCATTTACAGCCTCTGCC...GAATACAAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | ATGGTGGTTTACTTAGTTAAAACTCAACTGCACAGCACTGTTTATCAAGTGTCTTCAGGATGGGAAGGGTaGACAGGAAAGCAAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: MVVYLVKTQLHSTVYQVSSGWEG*TGKQSQ Trigger: CTGACTTTGCTTTCCTGTGCACCCTTCCCATCCTGA...AGACACTTGATAAACAGTGCTGTGCAGTTGAGTTTTAACTAAGTAAACCACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CCA 90 bp | GACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGTATTCTGCTGGTGTAGAGGTTaGTGTGAAGCACATATCGGT | + |
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Preference number: 4 (lower is better) Translates to: DLTNDEMHSAFATSYLVFCWCRG*CEAHIG Trigger: ACCGATATGTGCTTCACACCAACCTCTACACCAGCA...GAATACAAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | ATGGTGGTTTACTTAGTTAAAACTCAACTGCACAGCACTGTTTATCAAGTGTCTTGTTCCAGTTCTTCATaGAGAAGAGGTAGCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: MVVYLVKTQLHSTVYQVSCSSSS*RRGSQT Trigger: TGTTTGGCTACCTCTTCTGCATGAAGAACTGGAACA...AGACACTTGATAAACAGTGCTGTGCAGTTGAGTTTTAACTAAGTAAACCACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR TCA 90 bp | GACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGTATTCCAAGCAGTCCAAAAATaGACTCGATTGCATAAAATG | + |
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Preference number: 4 (lower is better) Translates to: DLTNDEMHSAFATSYLVFQAVQK*TRLHKM Trigger: CATTTTATGCAATCGAGTTCATTTTTGGACTGCTTG...GAATACAAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | ATGGTGGTTTACTTAGTTAAAACTCAACTGCACAGCACTGTTTATCAAGTGTCTGAAGCACATATCGGTTaGTTATACAGAGAACATCTC | + |
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Preference number: 4 (lower is better) Translates to: MVVYLVKTQLHSTVYQVSEAHIG*LYREHL Trigger: GAGATGTTCTCTGTATAAGCAACCGATATGTGCTTC...AGACACTTGATAAACAGTGCTGTGCAGTTGAGTTTTAACTAAGTAAACCACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR GCA 90 bp | ATGGTGGTTTACTTAGTTAAAACTCAACTGCACAGCACTGTTTATCAAGTGTCTCTCGATTGCATAAAATaGAGAGAGGTAGTACTTATT | + |
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Preference number: 4 (lower is better) Translates to: MVVYLVKTQLHSTVYQVSLDCIK*REVVLI Trigger: AATAAGTACTACCTCTCTGCATTTTATGCAATCGAG...AGACACTTGATAAACAGTGCTGTGCAGTTGAGTTTTAACTAAGTAAACCACCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 90 bp | GCGCATGATATGATAGGGTGTGAAGAGTATAGAGAAGATCACAACTaGCAGGACCACCAGGCGTTGGGGTTTGTCCAGTGGCAGGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: AHDMIGCEEYREDHN*QDHQALGFVQWQGS Trigger: ACTGCCCTGCCACTGGACAAACCCCAACGCCTGGTGGTCCTGGCAGTTGTGATCTTCTCTATACTCTTCACACCCTATCATATCATGCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CAA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTCAGGGTTTCCAGAACTaGCATAGTCGATGCAGTTAC | + |
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Preference number: 5 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGQGFQN*HSRCSY Trigger: GTAACTGCATCGACTATGCAAGTTCTGGAAACCCTG...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CAA 90 bp | ATGGTGGTTTACTTAGTTAAAACTCAACTGCACAGCACTGTTTATCAAGTGTCTCCAGTGGCAGGGCAGTaGCTTGCTGCTGGCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: MVVYLVKTQLHSTVYQVSPVAGQ*LAAGSS Trigger: GGAGGAGCCAGCAGCAAGCAACTGCCCTGCCACTGG...AGACACTTGATAAACAGTGCTGTGCAGTTGAGTTTTAACTAAGTAAACCACCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CAA 90 bp | CTCCAGCCCTGGGGGTTGGAGGATGGTGGAAAGCTAAAGCCTAGAAATGGTGGTAAGGATGTAAGGGACTaGAAGTATTGTCTGAACTTA | + |
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Preference number: 5 (lower is better) Translates to: LQPWGLEDGGKLKPRNGGKDVRD*KYCLNL Trigger: TAAGTTCAGACAATACTTCAAGTCCCTTACATCCTT...ACCACCATTTCTAGGCTTTAGCTTTCCACCATCCTCCAACCCCCAGGGCTGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 90 bp | CAGGCAGAGGCTGTAAATGAGATTGTGTTCAGGGTTTCCAGAACTTaGATAGTCGATGCAGTTACTGCCCTCTTCTTTTGGGACAGAATT | + |
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Preference number: 5 (lower is better) Translates to: QAEAVNEIVFRVSRT*IVDAVTALFFWDRI Trigger: AATTCTGTCCCAAAAGAAGAGGGCAGTAACTGCATCGACTATGCAAGTTCTGGAAACCCTGAACACAATCTCATTTACAGCCTCTGCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS CCA 90 bp | ATCGGTTGCTTATACAGAGAACATCTCCATAGGTCCCCTTATCATTaGCATAACTCTTTATCAGGATGGGAAGGGTGCACAGGAAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: IGCLYREHLHRSPYH*HNSLSGWEGCTGKQ Trigger: TTGCTTTCCTGTGCACCCTTCCCATCCTGATAAAGAGTTATGCCAATGATAAGGGGACCTATGGAGATGTTCTCTGTATAAGCAACCGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 90 bp | AGTGACATTCCCAAGCAGTCCAAAAATGAACTCGATTGCATAAAATaGAGAGAGGTAGTACTTATTCAAGATAGCCTCTGTTGCCAACCA | + |
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Preference number: 5 (lower is better) Translates to: SDIPKQSKNELDCIK*REVVLIQDSLCCQP Trigger: TGGTTGGCAACAGAGGCTATCTTGAATAAGTACTACCTCTCTGCATTTTATGCAATCGAGTTCATTTTTGGACTGCTTGGGAATGTCACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 90 bp | AAACACCACAGTGACATTCCCAAGCAGTCCAAAAATGAACTCGATTaGATAAAATGCAGAGAGGTAGTACTTATTCAAGATAGCCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: KHHSDIPKQSKNELD*IKCREVVLIQDSLC Trigger: ACAGAGGCTATCTTGAATAAGTACTACCTCTCTGCATTTTATGCAATCGAGTTCATTTTTGGACTGCTTGGGAATGTCACTGTGGTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS-3UTR CAA 90 bp | GACCTGACCAATGATGAAATGCATTCAGCATTTGCAACTAGCTATCTTGTATTCAAGGGACTTGAAGTATaGTCTGAACTTACTAATCAG | + |
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Preference number: 5 (lower is better) Translates to: DLTNDEMHSAFATSYLVFKGLEV*SELTNQ Trigger: CTGATTAGTAAGTTCAGACAATACTTCAAGTCCCTT...GAATACAAGATAGCTAGTTGCAAATGCTGAATGCATTTCATCATTGGTCAGGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS CCA 72 bp | AACTGCCAGGACCACCAGGCGTTGGGGTTTGTCCAGTaGCAGGGCAGTTGCTTGCTGCTGGCTCCTCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: NCQDHQALGFVQ*QGSCLLLAPPL Trigger: AAGAGGAGGAGCCAGCAGCAAGCAACTGCCCTGCCACTGGACAAACCCCAACGCCTGGTGGTCCTGGCAGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS CCA 72 bp | ATAGAGAAGATCACAACTGCCAGGACCACCAGGCGTTaGGGTTTGTCCAGTGGCAGGGCAGTTGCTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: IEKITTARTTRR*GLSSGRAVACC Trigger: GCAGCAAGCAACTGCCCTGCCACTGGACAAACCCCAACGCCTGGTGGTCCTGGCAGTTGTGATCTTCTCTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS CAA 72 bp | TATAGAGAAGATCACAACTGCCAGGACCACCAGGCGTaGGGGTTTGTCCAGTGGCAGGGCAGTTGCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: YREDHNCQDHQA*GFVQWQGSCLL Trigger: CAGCAAGCAACTGCCCTGCCACTGGACAAACCCCAACGCCTGGTGGTCCTGGCAGTTGTGATCTTCTCTATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 72 bp | CGTTGGGGTTTGTCCAGTGGCAGGGCAGTTGCTTGCTaGTGGCTCCTCCTCTTTAAGAAGACTACCATCTTG | + |
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Preference number: 6 (lower is better) Translates to: RWGLSSGRAVAC*WLLLFKKTTIL Trigger: CAAGATGGTAGTCTTCTTAAAGAGGAGGAGCCAGCAGCAAGCAACTGCCCTGCCACTGGACAAACCCCAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 72 bp | ATGATAGGGTGTGAAGAGTATAGAGAAGATCACAACTaGCAGGACCACCAGGCGTTGGGGTTTGTCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: MIGCEEYREDHN*QDHQALGFVQW Trigger: CCACTGGACAAACCCCAACGCCTGGTGGTCCTGGCAGTTGTGATCTTCTCTATACTCTTCACACCCTATCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS TCA 72 bp | CTTCTGTGTACATCCTTGTGGCCAACTATCCAGGCGTaGGGCGATCCTCAAATTGCGCATGATATGATAGGG | + |
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Preference number: 6 (lower is better) Translates to: LLCTSLWPTIQA*GDPQIAHDMIG Trigger: CCCTATCATATCATGCGCAATTTGAGGATCGCCTCACGCCTGGATAGTTGGCCACAAGGATGTACACAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS GCA 72 bp | GCTGTAAATGAGATTGTGTTCAGGGTTTCCAGAACTTaGATAGTCGATGCAGTTACTGCCCTCTTCTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: AVNEIVFRVSRT*IVDAVTALFFW Trigger: CCAAAAGAAGAGGGCAGTAACTGCATCGACTATGCAAGTTCTGGAAACCCTGAACACAATCTCATTTACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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| CDS CAA 72 bp | TCGATGCAGTTACTGCCCTCTTCTTTTGGGACAGAATaGATGAAAGTGAGCATGGGTAGAACTTCTAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: SMQLLPSSFGTE*MKVSMGRTSKV Trigger: GACCTTAGAAGTTCTACCCATGCTCACTTTCATCAATTCTGTCCCAAAAGAAGAGGGCAGTAACTGCATCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029326.6 |
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