Pregenerated sensors for SUCLA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022110Ensembl transcript IDs: ENSMUST00000022706.7, ENSMUST00000160507.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAGATGCAGAGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTaGTTACATTCTCCACACATTAAAAGAAAAGGGACACTAGGAGAG | + |
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Preference number: 1 (lower is better) Translates to: SDAEQMLSKVCVPMW*LHSPHIKRKGTLGE Trigger: CTCTCCTAGTGTCCCTTTTCTTTTAATGTGTGGAGAATGTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| 3UTR GCA 72 bp | GTCCATTCTCAGCAGCAGAATCAGATGCAGAGCAAATaGTTTCAAAGGTATGTGTGCCTATGTGGTGATTAC | + |
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Preference number: 3 (lower is better) Translates to: VHSQQQNQMQSK*FQRYVCLCGDY Trigger: GTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGATTCTGCTGCTGAGAATGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| 3UTR TCA 72 bp | GAGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTaGTTACATTCTCCACACATTAAAAGAAAAGGGACA | + |
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Preference number: 3 (lower is better) Translates to: EQMLSKVCVPMW*LHSPHIKRKGT Trigger: TGTCCCTTTTCTTTTAATGTGTGGAGAATGTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| 3UTR GCA 72 bp | AATCAGATGCAGAGCAAATGCTTTCAAAGGTATGTGTaGCTATGTGGTGATTACATTCTCCACACATTAAAA | + |
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Preference number: 3 (lower is better) Translates to: NQMQSKCFQRYV*LCGDYILHTLK Trigger: TTTTAATGTGTGGAGAATGTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTAGGGTCCTCTGCTGCTaGTGCTGCACTTGTAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: HQKAGILQVTFRSHPPRSRVLCC*CCTCSP Trigger: TGGACTACAAGTGCAGCAGCAGCAGCAGAGGACCCT...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTAGCGAAAGGGTCCTCTaGTGCTGCTGCTGCACTTGT | + |
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Preference number: 4 (lower is better) Translates to: HQKAGILQVTFRSHPPRSSERVL*CCCCTC Trigger: ACAAGTGCAGCAGCAGCAGCAGAGGACCCTTTCGCT...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTCTCTGCTGCTGCTGCTaGACTTGTAGTCCATGCTTG | + |
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Preference number: 4 (lower is better) Translates to: HQKAGILQVTFRSHPPRSLCCCC*TCSPCL Trigger: CAAGCATGGACTACAAGTGCAGCAGCAGCAGCAGAG...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR CCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTTGCCACGAAGCCTTTaGGAACAGAGACACCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRLPRSL*EQRHPL Trigger: AAGCGGGTGTCTCTGTTCCCAAAGGCTTCGTGGCAA...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGATACTCAAGTATTCATaGAGCGAAAGGGTCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRILKYS*SERVLC Trigger: GCAGAGGACCCTTTCGCTGCATGAATACTTGAGTAT...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGGTTAACACCACCTTGTaGACTTCCTATCAGTACAGG | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRVNTTL*TSYQYR Trigger: CCTGTACTGATAGGAAGTGCACAAGGTGGTGTTAAC...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTAAATCCCATCTTCTGTaGAAGTGTCACGGCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: HQKAGILQVTFRSHPPRSKSHLL*KCHGLF Trigger: GAACAAGCCGTGACACTTGCACAGAAGATGGGATTT...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR CCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGCCACATGGGCTTCTTTaGCTAAGGTCACTATTTCAG | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRPHGLL*LRSLFQ Trigger: CTGAAATAGTGACCTTAGCCAAAGAAGCCCATGTGG...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR TCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGATCAGTACAGGACCTTaGAATGACCTCTCCATTGTT | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRISTGP*NDLSIV Trigger: AACAATGGAGAGGTCATTTCAAGGTCCTGTACTGAT...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CGTGTGTTTTTACCACCACAGAATCATGACGACTTGCACTTATCATTGTCCTGTCTCTGCTGCTGCTGCTaGACTTGTAGTCCATGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RVFLPPQNHDDLHLSLSCLCCCC*TCSPCL Trigger: CAAGCATGGACTACAAGTGCAGCAGCAGCAGCAGAG...ACAGGACAATGATAAGTGCAAGTCGTCATGATTCTGTGGTGGTAAAAACACACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | AGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTGATTACATTCTCCACACAAGGGTCCTCTGCTGCTaGTGCTGCACTTGTAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SKCFQRYVCLCGDYILHTRVLCC*CCTCSP Trigger: TGGACTACAAGTGCAGCAGCAGCAGCAGAGGACCCT...TGTGTGGAGAATGTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGCTTGATCATGTTTTCTaGTGCAGAGTCCACAATGTT | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRLDHVF*CRVHNV Trigger: AACATTGTGGACTCTGCAGCAGAAAACATGATCAAG...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGAATATCTGCATTAGCTaGTTCTTTGTCCCTTTCGTC | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRNICIS*FFVPFV Trigger: GACGAAAGGGACAAAGAAGCAGCTAATGCAGATATT...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR CCA 90 bp | CAGAATCAGATGCAGAGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTGATTTGCCACGAAGCCTTTaGGAACAGAGACACCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: QNQMQSKCFQRYVCLCGDLPRSL*EQRHPL Trigger: AAGCGGGTGTCTCTGTTCCCAAAGGCTTCGTGGCAA...ATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGATTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | CTGCGTGTGTTTTTACCACCACAGAATCATGACGACTTGCACTTATCATTGTCCATACTCAAGTATTCATaGAGCGAAAGGGTCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LRVFLPPQNHDDLHLSLSILKYS*SERVLC Trigger: GCAGAGGACCCTTTCGCTGCATGAATACTTGAGTAT...GGACAATGATAAGTGCAAGTCGTCATGATTCTGTGGTGGTAAAAACACACGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTTGGTAATCAATTTTTaGCCAATCATCTGTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRLVINF*PIICEE Trigger: TTCCTCACAGATGATTGGGCAAAAATTGATTACCAA...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR GCA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGCATGACTATTCCTTGTaGAATAACATCACATCTCAT | + |
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Preference number: 4 (lower is better) Translates to: QHQKAGILQVTFRSHPPRHDYSL*NNITSH Trigger: ATGAGATGTGATGTTATTGCACAAGGAATAGTCATG...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR TCA 90 bp | CAGAATCAGATGCAGAGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTGATATCAGTACAGGACCTTaGAATGACCTCTCCATTGTT | + |
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Preference number: 4 (lower is better) Translates to: QNQMQSKCFQRYVCLCGDISTGP*NDLSIV Trigger: AACAATGGAGAGGTCATTTCAAGGTCCTGTACTGAT...ATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGATTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | GTGTGTTTTTACCACCACAGAATCATGACGACTTGCACTTATCATTGTCCTGTAAAATCCCATCTTCTGTaGAAGTGTCACGGCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: VCFYHHRIMTTCTYHCPVKSHLL*KCHGLF Trigger: GAACAAGCCGTGACACTTGCACAGAAGATGGGATTT...TACAGGACAATGATAAGTGCAAGTCGTCATGATTCTGTGGTGGTAAAAACACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | AATCAGATGCAGAGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTGATTACCTTGATCATGTTTTCTaGTGCAGAGTCCACAATGTT | + |
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Preference number: 4 (lower is better) Translates to: NQMQSKCFQRYVCLCGDYLDHVF*CRVHNV Trigger: AACATTGTGGACTCTGCAGCAGAAAACATGATCAAG...GTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR CCA 90 bp | GACACTAGGAGAGACCACAGTATAATAAAGAATTACAGCACATTAATACCCGTACCACATGGGCTTCTTTaGCTAAGGTCACTATTTCAG | + |
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Preference number: 4 (lower is better) Translates to: DTRRDHSIIKNYSTLIPVPHGLL*LRSLFQ Trigger: CTGAAATAGTGACCTTAGCCAAAGAAGCCCATGTGG...TACGGGTATTAATGTGCTGTAATTCTTTATTATACTGTGGTCTCTCCTAGTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | TTTTTACCACCACAGAATCATGACGACTTGCACTTATCATTGTCCTGTAATAATGTTAACACCACCTTGTaGACTTCCTATCAGTACAGG | + |
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Preference number: 4 (lower is better) Translates to: FLPPQNHDDLHLSLSCNNVNTTL*TSYQYR Trigger: CCTGTACTGATAGGAAGTGCACAAGGTGGTGTTAAC...ATTATTACAGGACAATGATAAGTGCAAGTCGTCATGATTCTGTGGTGGTAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | AGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTGATTACATTCTCCACACATTGGTAATCAATTTTTaGCCAATCATCTGTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: SKCFQRYVCLCGDYILHTLVINF*PIICEE Trigger: TTCCTCACAGATGATTGGGCAAAAATTGATTACCAA...TGTGTGGAGAATGTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | TTTTTACCACCACAGAATCATGACGACTTGCACTTATCATTGTCCTGTAATAATAATATCTGCATTAGCTaGTTCTTTGTCCCTTTCGTC | + |
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Preference number: 4 (lower is better) Translates to: FLPPQNHDDLHLSLSCNNNICIS*FFVPFV Trigger: GACGAAAGGGACAAAGAAGCAGCTAATGCAGATATT...ATTATTACAGGACAATGATAAGTGCAAGTCGTCATGATTCTGTGGTGGTAAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR GCA 90 bp | TTTTTACCACCACAGAATCATGACGACTTGCACTTATCATTGTCCTGTAATAATCATGACTATTCCTTGTaGAATAACATCACATCTCAT | + |
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Preference number: 4 (lower is better) Translates to: FLPPQNHDDLHLSLSCNNHDYSL*NNITSH Trigger: ATGAGATGTGATGTTATTGCACAAGGAATAGTCATG...ATTATTACAGGACAATGATAAGTGCAAGTCGTCATGATTCTGTGGTGGTAAAAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS GCA 90 bp | ACAGAGACACCCGCTTCCTGCAATAACTCCATACTCAAGTATTCATaGAGCGAAAGGGTCCTCTGCTGCTGCTGCTGCACTTGTAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: TETPASCNNSILKYS*SERVLCCCCCTCSP Trigger: TGGACTACAAGTGCAGCAGCAGCAGCAGAGGACCCTTTCGCTGCATGAATACTTGAGTATGGAGTTATTGCAGGAAGCGGGTGTCTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022706.7 ENSMUST00000160507.8 |
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| CDS-3UTR CAA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTCTTCATCGGATGACTTaGCCACGAAGCCTTTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: HQKAGILQVTFRSHPPRSLHRMT*PRSLWE Trigger: TTCCCAAAGGCTTCGTGGCAAAGTCATCCGATGAAG...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR CAA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTTCCACATGGGCTTCTTaGGCTAAGGTCACTATTTCA | + |
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Preference number: 5 (lower is better) Translates to: HQKAGILQVTFRSHPPRSSTWAS*AKVTIS Trigger: TGAAATAGTGACCTTAGCCAAAGAAGCCCATGTGGA...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS GCA 90 bp | ATACTCAAGTATTCATGCAGCGAAAGGGTCCTCTGCTGCTGCTGCTaGACTTGTAGTCCATGCTTGTTAAACAAGCCAGAATTTCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: ILKYSCSERVLCCCC*TCSPCLLNKPEFPR Trigger: TCTGGGAAATTCTGGCTTGTTTAACAAGCATGGACTACAAGTGCAGCAGCAGCAGCAGAGGACCCTTTCGCTGCATGAATACTTGAGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022706.7 ENSMUST00000160507.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGAATCAGATGCAGAGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTCTTCATCGGATGACTTaGCCACGAAGCCTTTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: QQNQMQSKCFQRYVCLCGLHRMT*PRSLWE Trigger: TTCCCAAAGGCTTCGTGGCAAAGTCATCCGATGAAG...ACCACATAGGCACACATACCTTTGAAAGCATTTGCTCTGCATCTGATTCTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR CAA 90 bp | CAACACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGACTTGTAGTCCATGCTaGTTAAACAAGCCAGAATTT | + |
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Preference number: 5 (lower is better) Translates to: QHQKAGILQVTFRSHPPRTCSPC*LNKPEF Trigger: AAATTCTGGCTTGTTTAACAAGCATGGACTACAAGT...CCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR CAA 90 bp | CACCAGAAAGCAGGCATACTGCAAGTGACATTCCGTAGCCATCCACCAAGGTCTTTTTCTCCAGTTTGCTaGGTAATCAATTTTTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: HQKAGILQVTFRSHPPRSFSPVC*VINFCP Trigger: TGGGCAAAAATTGATTACCAAGCAAACTGGAGAAAA...AGACCTTGGTGGATGGCTACGGAATGTCACTTGCAGTATGCCTGCTTTCTGGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022706.7 |
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| CDS-3UTR CAA 90 bp | AGCAAATGCTTTCAAAGGTATGTGTGCCTATGTGGTGATTACATTCTCCACACATCCACATGGGCTTCTTaGGCTAAGGTCACTATTTCA | + |
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Preference number: 5 (lower is better) Translates to: SKCFQRYVCLCGDYILHTSTWAS*AKVTIS Trigger: TGAAATAGTGACCTTAGCCAAAGAAGCCCATGTGGA...TGTGTGGAGAATGTAATCACCACATAGGCACACATACCTTTGAAAGCATTTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS-3UTR CAA 90 bp | AGTCTTAATAGGTGCCTTTCTTATCAATCTGCGTGTGTTTTTACCACCACAGAAACTTGTAGTCCATGCTaGTTAAACAAGCCAGAATTT | + |
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Preference number: 5 (lower is better) Translates to: SLNRCLSYQSACVFTTTETCSPC*LNKPEF Trigger: AAATTCTGGCTTGTTTAACAAGCATGGACTACAAGT...TTCTGTGGTGGTAAAAACACACGCAGATTGATAAGAAAGGCACCTATTAAGACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160507.8 |
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| CDS GCA 72 bp | CCCGCTTCCTGCAATAACTCCATACTCAAGTATTCATaGAGCGAAAGGGTCCTCTGCTGCTGCTGCTGCACT | + |
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Preference number: 6 (lower is better) Translates to: PASCNNSILKYS*SERVLCCCCCT Trigger: AGTGCAGCAGCAGCAGCAGAGGACCCTTTCGCTGCATGAATACTTGAGTATGGAGTTATTGCAGGAAGCGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022706.7 ENSMUST00000160507.8 |
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| CDS CCA 72 bp | CATGCACAACACCTTTCCGTCAGAATCTTCTACCATTaGGTTTATTTCTACCATAGTTGCATCATACTTCAG | + |
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Preference number: 6 (lower is better) Translates to: HAQHLSVRIFYH*VYFYHSCIILQ Trigger: CTGAAGTATGATGCAACTATGGTAGAAATAAACCCAATGGTAGAAGATTCTGACGGAAAGGTGTTGTGCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022706.7 ENSMUST00000160507.8 |
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