Pregenerated sensors for SUB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022205Ensembl transcript IDs: ENSMUST00000022816.15, ENSMUST00000110504.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACAGCTCTCAGCTTCCTGGCTATGGAGCCATGTGGCCAGATGTCTaGAGTTCCTGCCACTGTGACAATGCGACAACGGACTGGAACATG | + |
|
Preference number: 1 (lower is better) Translates to: HSSQLPGYGAMWPDV*SSCHCDNATTDWNM Trigger: CATGTTCCAGTCCGTTGTCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCTCCATAGCCAGGAAGCTGAGAGCTGTG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 90 bp | TCCTGCCACTGTGACAATGCGACAACGGACTGGAACATGGAACTGTaGGTCAGGATAAACCCTTTCTCCCTTGGCTGCTTCTGTCAGGGC | + |
|
Preference number: 1 (lower is better) Translates to: SCHCDNATTDWNMEL*VRINPFSLGCFCQG Trigger: GCCCTGACAGAAGCAGCCAAGGGAGAAAGGGTTTATCCTGACTCACAGTTCCATGTTCCAGTCCGTTGTCGCATTGTCACAGTGGCAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 90 bp | TGGCTATGGAGCCATGTGGCCAGATGTCTGGAGTTCCTGCCACTGTaGCAATGCGACAACGGACTGGAACATGGAACTGTGAGTCAGGAT | + |
|
Preference number: 1 (lower is better) Translates to: WLWSHVARCLEFLPL*QCDNGLEHGTVSQD Trigger: ATCCTGACTCACAGTTCCATGTTCCAGTCCGTTGTCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCTCCATAGCCA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 90 bp | GCCAACTCCAGCTCCTGGGCTCAGGTTAATGAGACAAAAAGGAACTaGGCATGCAATCACAGCTCTCAGCTTCCTGGCTATGGAGCCATG | + |
|
Preference number: 1 (lower is better) Translates to: ANSSSWAQVNETKRN*ACNHSSQLPGYGAM Trigger: CATGGCTCCATAGCCAGGAAGCTGAGAGCTGTGATTGCATGCTCAGTTCCTTTTTGTCTCATTAACCTGAGCCCAGGAGCTGGAGTTGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CCA 90 bp | GGACTGGAACATGGAACTGTGAGTCAGGATAAACCCTTTCTCCCTTaGCTGCTTCTGTCAGGGCACTTCACCACAGCAACAGAAAAGAAA | + |
|
Preference number: 1 (lower is better) Translates to: GLEHGTVSQDKPFLP*LLLSGHFTTATEKK Trigger: TTTCTTTTCTGTTGCTGTGGTGAAGTGCCCTGACAGAAGCAGCCAAGGGAGAAAGGGTTTATCCTGACTCACAGTTCCATGTTCCAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CCA 90 bp | CGGCAGATCTCTGCAATCGGACAGCTGAAATGTACATATAACACATaGCCTCAGGAATTTACCTGTTATTCTCCCCTCATCTGCACCAAA | + |
|
Preference number: 1 (lower is better) Translates to: RQISAIGQLKCTYNT*PQEFTCYSPLICTK Trigger: TTTGGTGCAGATGAGGGGAGAATAACAGGTAAATTCCTGAGGCCATGTGTTATATGTACATTTCAGCTGTCCGATTGCAGAGATCTGCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CCA 90 bp | GATGTCTGGAGAATCATCTTGCCTGCTGTGGCCAACTCCAGCTCCTGGGCTCAGAAACCCTTTCTCCCTTaGCTGCTTCTGTCAGGGCAC | + |
|
Preference number: 2 (lower is better) Translates to: DVWRIILPAVANSSSWAQKPFLP*LLLSGH Trigger: GTGCCCTGACAGAAGCAGCCAAGGGAGAAAGGGTTT...CTGAGCCCAGGAGCTGGAGTTGGCCACAGCAGGCAAGATGATTCTCCAGACATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR TCA 90 bp | GCTATGGAGCCATGTGGCCAGATGTCTGGAGTTCCTGCCACTGTGACAATGCGAAGCACAAATGTTTACTaGGTGACAGCTCATCAGACA | + |
|
Preference number: 2 (lower is better) Translates to: AMEPCGQMSGVPATVTMRSTNVY*VTAHQT Trigger: TGTCTGATGAGCTGTCACTCAGTAAACATTTGTGCT...TCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCTCCATAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR TCA 90 bp | GCTATGGAGCCATGTGGCCAGATGTCTGGAGTTCCTGCCACTGTGACAATGCGAAAGAAACTAAGACACTaGGGAGAAAGGCATCTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: AMEPCGQMSGVPATVTMRKKLRH*GERHLN Trigger: GTTCAGATGCCTTTCTCCTCAGTGTCTTAGTTTCTT...TCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCTCCATAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CCA 90 bp | GATGTCTGGAGAATCATCTTGCCTGCTGTGGCCAACTCCAGCTCCTGGGCTCAGCTATGCCCTTTTCATTaGAGCAATGTCCCTAAAACA | + |
|
Preference number: 2 (lower is better) Translates to: DVWRIILPAVANSSSWAQLCPFH*SNVPKT Trigger: TGTTTTAGGGACATTGCTCCAATGAAAAGGGCATAG...CTGAGCCCAGGAGCTGGAGTTGGCCACAGCAGGCAAGATGATTCTCCAGACATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR TCA 90 bp | GATGTCTGGAGAATCATCTTGCCTGCTGTGGCCAACTCCAGCTCCTGGGCTCAGAGGAGGCAACAAAACTaGCAGTTTGACTTTCTAAAT | + |
|
Preference number: 2 (lower is better) Translates to: DVWRIILPAVANSSSWAQRRQQN*QFDFLN Trigger: ATTTAGAAAGTCAAACTGTCAGTTTTGTTGCCTCCT...CTGAGCCCAGGAGCTGGAGTTGGCCACAGCAGGCAAGATGATTCTCCAGACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CAA 90 bp | CCTTTCTCATCACAGGCTAGCTCCCTTCAGTGTGGTGACTTTCCTTaGCAAACATTTTCCCTCAGAACACTATGCCCTTTTCATTGGAGC | + |
|
Preference number: 2 (lower is better) Translates to: PFSSQASSLQCGDFP*QTFSLRTLCPFHWS Trigger: GCTCCAATGAAAAGGGCATAGTGTTCTGAGGGAAAATGTTTGCAAAGGAAAGTCACCACACTGAAGGGAGCTAGCCTGTGATGAGAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR GCA 90 bp | TCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTTTACAGCTGACTCAACAGTGTaGCTAGTTGTTCTTTTGGCC | + |
|
Preference number: 2 (lower is better) Translates to: SPLICTKPVLCSNYPFFTADSTV*LVVLLA Trigger: GGCCAAAAGAACAACTAGGCACACTGTTGAGTCAGC...TGTAAAGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR GCA 90 bp | ACTCCAGCTCCTGGGCTCAGGTTAATGAGACAAAAAGGAACTGAGCATGCAATCAAACATGTGCCTGTCTaGTTGCTTAATCATCACAAT | + |
|
Preference number: 2 (lower is better) Translates to: TPAPGLRLMRQKGTEHAIKHVPV*LLNHHN Trigger: ATTGTGATGATTAAGCAAGCAGACAGGCACATGTTT...GATTGCATGCTCAGTTCCTTTTTGTCTCATTAACCTGAGCCCAGGAGCTGGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CCA 90 bp | ACTCCAGCTCCTGGGCTCAGGTTAATGAGACAAAAAGGAACTGAGCATGCAATCTGTACATATAACACATaGCCTCAGGAATTTACCTGT | + |
|
Preference number: 2 (lower is better) Translates to: TPAPGLRLMRQKGTEHAICTYNT*PQEFTC Trigger: ACAGGTAAATTCCTGAGGCCATGTGTTATATGTACA...GATTGCATGCTCAGTTCCTTTTTGTCTCATTAACCTGAGCCCAGGAGCTGGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CCA 90 bp | ACTCCAGCTCCTGGGCTCAGGTTAATGAGACAAAAAGGAACTGAGCATGCAATCAGAAAGCTTTCCACATaGAATTTTATGCTAAGCAGC | + |
|
Preference number: 2 (lower is better) Translates to: TPAPGLRLMRQKGTEHAIRKLST*NFMLSS Trigger: GCTGCTTAGCATAAAATTCCATGTGGAAAGCTTTCT...GATTGCATGCTCAGTTCCTTTTTGTCTCATTAACCTGAGCCCAGGAGCTGGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR GCA 90 bp | TCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTTTACATCCCTCAGAACACTATaGCCTTTTCATTGGAGCAAT | + |
|
Preference number: 2 (lower is better) Translates to: SPLICTKPVLCSNYPFFTSLRTL*PFHWSN Trigger: ATTGCTCCAATGAAAAGGGCATAGTGTTCTGAGGGA...TGTAAAGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR TCA 90 bp | GTTATTCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTCTACACAGAGCACTATaGATAATGACATACACTTGC | + |
|
Preference number: 2 (lower is better) Translates to: VILPSSAPNQSYVLTILSLHRAL*IMTYTC Trigger: GCAAGTGTATGTCATTATTCATAGTGCTCTGTGTAG...AGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGAATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CAA 90 bp | TGGAAATGTCTATCAAACCTAGTTAACATCAAGTCTGGAAGTCACTaGTCCAGATTAACTGTAGAACAGTCAACTCTAAAACTGCCCACA | + |
|
Preference number: 2 (lower is better) Translates to: WKCLSNLVNIKSGSH*SRLTVEQSTLKLPT Trigger: TGTGGGCAGTTTTAGAGTTGACTGTTCTACAGTTAATCTGGACAAGTGACTTCCAGACTTGATGTTAACTAGGTTTGATAGACATTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR GCA 90 bp | GTTATTCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTCACCAACATATCATGTaGACAACATTTAGTTTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: VILPSSAPNQSYVLTILSHQHIM*TTFSFK Trigger: CTTGAAACTAAATGTTGTGCACATGATATGTTGGTG...AGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGAATAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR GCA 72 bp | GATAGGCCTCTAGGCATGATGTCTGGAGAATCATCTTaGCTGCTGTGGCCAACTCCAGCTCCTGGGCTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: DRPLGMMSGESS*LLWPTPAPGLR Trigger: CCTGAGCCCAGGAGCTGGAGTTGGCCACAGCAGGCAAGATGATTCTCCAGACATCATGCCTAGAGGCCTATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CCA 72 bp | CAGCTTCCTGGCTATGGAGCCATGTGGCCAGATGTCTaGAGTTCCTGCCACTGTGACAATGCGACAACGGAC | + |
|
Preference number: 3 (lower is better) Translates to: QLPGYGAMWPDV*SSCHCDNATTD Trigger: GTCCGTTGTCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCTCCATAGCCAGGAAGCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR GCA 72 bp | GGCTATGGAGCCATGTGGCCAGATGTCTGGAGTTCCTaGCACTGTGACAATGCGACAACGGACTGGAACATG | + |
|
Preference number: 3 (lower is better) Translates to: GYGAMWPDVWSS*HCDNATTDWNM Trigger: CATGTTCCAGTCCGTTGTCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCTCCATAGCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 72 bp | AGCCATGTGGCCAGATGTCTGGAGTTCCTGCCACTGTaGCAATGCGACAACGGACTGGAACATGGAACTGTG | + |
|
Preference number: 3 (lower is better) Translates to: SHVARCLEFLPL*QCDNGLEHGTV Trigger: CACAGTTCCATGTTCCAGTCCGTTGTCGCATTGTCACAGTGGCAGGAACTCCAGACATCTGGCCACATGGCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CCA 72 bp | AAGGAACTGAGCATGCAATCACAGCTCTCAGCTTCCTaGCTATGGAGCCATGTGGCCAGATGTCTGGAGTTC | + |
|
Preference number: 3 (lower is better) Translates to: KELSMQSQLSAS*LWSHVARCLEF Trigger: GAACTCCAGACATCTGGCCACATGGCTCCATAGCCAGGAAGCTGAGAGCTGTGATTGCATGCTCAGTTCCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 72 bp | CAGTTCTATAAAATGCTTAGACGGTGGGACTCAGTATaGCAGTGCAATTCTGATATGGCAGCCCTTAGTGGC | + |
|
Preference number: 3 (lower is better) Translates to: QFYKMLRRWDSV*QCNSDMAALSG Trigger: GCCACTAAGGGCTGCCATATCAGAATTGCACTGTCATACTGAGTCCCACCGTCTAAGCATTTTATAGAACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CAA 90 bp | TGCTTAGACGGTGGGACTCAGTATGACAGTGCAATTCTGATATGGCAGCCCTTAAAGTCTGGAAGTCACTaGTCCAGATTAACTGTAGAA | + |
|
Preference number: 3 (lower is better) Translates to: CLDGGTQYDSAILIWQPLKSGSH*SRLTVE Trigger: TTCTACAGTTAATCTGGACAAGTGACTTCCAGACTT...TAAGGGCTGCCATATCAGAATTGCACTGTCATACTGAGTCCCACCGTCTAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR GCA 72 bp | TGGCCTCAGGAATTTACCTGTTATTCTCCCCTCATCTaGACCAAACCAGTCTTATGTTCTAACTATCCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: WPQEFTCYSPLI*TKPVLCSNYPF Trigger: GAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGAATAACAGGTAAATTCCTGAGGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CCA 72 bp | TCTGCAATCGGACAGCTGAAATGTACATATAACACATaGCCTCAGGAATTTACCTGTTATTCTCCCCTCATC | + |
|
Preference number: 3 (lower is better) Translates to: SAIGQLKCTYNT*PQEFTCYSPLI Trigger: GATGAGGGGAGAATAACAGGTAAATTCCTGAGGCCATGTGTTATATGTACATTTCAGCTGTCCGATTGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 72 bp | ATTCAGAAAAGATACCTAAATATAACTCAACGGTTCTaGAGACGTTCACAGGCTCTATGGCAAGCTCTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: IQKRYLNITQRF*RRSQALWQALC Trigger: GCACAGAGCTTGCCATAGAGCCTGTGAACGTCTTCAGAACCGTTGAGTTATATTTAGGTATCTTTTCTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CAA 90 bp | TCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTTTACATGTGGTGACTTTCCTTaGCAAACATTTTCCCTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: SPLICTKPVLCSNYPFFTCGDFP*QTFSLR Trigger: TCTGAGGGAAAATGTTTGCAAAGGAAAGTCACCACA...TGTAAAGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CCA 72 bp | GAAGAAAAGATAAGTTATTGTGGTAGGGAGAAGTCCTaGAGAGGAAAACGCAGTAAATCTGGTTGGAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: EEKISYCGREKS*RGKRSKSGWKE Trigger: TTCTTTCCAACCAGATTTACTGCGTTTTCCTCTCCAGGACTTCTCCCTACCACAATAACTTATCTTTTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR-3UTR CAA 90 bp | TCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTTTACAATGACATACACTTGCTaGGAGTTCTCATATAAGTCA | + |
|
Preference number: 3 (lower is better) Translates to: SPLICTKPVLCSNYPFFTMTYTC*EFSYKS Trigger: TGACTTATATGAGAACTCCAAGCAAGTGTATGTCAT...TGTAAAGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 72 bp | TTTATAACCATCACCCTAGCACAAATGTTTACTGAGTaGCAGCTCATCAGACATCAAAGTCACTATGTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: FITITLAQMFTE*QLIRHQSHYVL Trigger: CAGAACATAGTGACTTTGATGTCTGATGAGCTGTCACTCAGTAAACATTTGTGCTAGGGTGATGGTTATAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR TCA 72 bp | GGAAAACGCAGTAAATCTGGTTGGAAAGAAAAAGGCTaGGTATACATTTCACAAAGCAATCTAAGAAACTCA | + |
|
Preference number: 3 (lower is better) Translates to: GKRSKSGWKEKG*VYISQSNLRNS Trigger: TGAGTTTCTTAGATTGCTTTGTGAAATGTATACTCAGCCTTTTTCTTTCCAACCAGATTTACTGCGTTTTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS-3UTR GCA 90 bp | ACTCCAGCTCCTGGGCTCAGGTTAATGAGACAAAAAGGAACTGAGCATGCAATCCATCTCTGCTGCTGCTaGTCTGCTTGGAGGATGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TPAPGLRLMRQKGTEHAIHLCCC*SAWRMP Trigger: TGGCATCCTCCAAGCAGAGCAGCAGCAGCAGAGATG...GATTGCATGCTCAGTTCCTTTTTGTCTCATTAACCTGAGCCCAGGAGCTGGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS-3UTR GCA 90 bp | AGTCCTGGAGAGGAAAACGCAGTAAATCTGGTTGGAAAGAAAAAGGCTGAGTATCTGCTGCTGCTGCTCTaGTTGGAGGATGCCAGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SPGEENAVNLVGKKKAEYLLLLL*LEDASA Trigger: AGCACTGGCATCCTCCAAGCAGAGCAGCAGCAGCAG...ATACTCAGCCTTTTTCTTTCCAACCAGATTTACTGCGTTTTCCTCTCCAGGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS-3UTR CCA 90 bp | AGTCCTGGAGAGGAAAACGCAGTAAATCTGGTTGGAAAGAAAAAGGCTGAGTATCTTCACGGGCTTCTCTaGAACCGCTTGCTTTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SPGEENAVNLVGKKKAEYLHGLL*NRLLFP Trigger: AGGAAAAAGCAAGCGGTTCCAGAGAAGCCCGTGAAG...ATACTCAGCCTTTTTCTTTCCAACCAGATTTACTGCGTTTTCCTCTCCAGGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CAA 72 bp | TCACAGGCTAGCTCCCTTCAGTGTGGTGACTTTCCTTaGCAAACATTTTCCCTCAGAACACTATGCCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SQASSLQCGDFP*QTFSLRTLCPF Trigger: AAAAGGGCATAGTGTTCTGAGGGAAAATGTTTGCAAAGGAAAGTCACCACACTGAAGGGAGCTAGCCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS-3UTR CCA 90 bp | TCTCCCCTCATCTGCACCAAACCAGTCTTATGTTCTAACTATCCTTTCTTTACACTCATCTTTCCAATCTaGAACATGTTGTCATCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: SPLICTKPVLCSNYPFFTLIFPI*NMLSSL Trigger: CAGAGATGACAACATGTTCCAGATTGGAAAGATGAG...TGTAAAGAAAGGATAGTTAGAACATAAGACTGGTTTGGTGCAGATGAGGGGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| 3UTR CAA 72 bp | CTATCAAACCTAGTTAACATCAAGTCTGGAAGTCACTaGTCCAGATTAACTGTAGAACAGTCAACTCTAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LSNLVNIKSGSH*SRLTVEQSTLK Trigger: TTTTAGAGTTGACTGTTCTACAGTTAATCTGGACAAGTGACTTCCAGACTTGATGTTAACTAGGTTTGATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS-3UTR CAA 90 bp | ATGCAATCACAGCTCTCAGCTTCCTGGCTATGGAGCCATGTGGCCAGATGTCTGCTGCTGCTGCTCTGCTaGGAGGATGCCAGTGCTCTA | + |
|
Preference number: 5 (lower is better) Translates to: MQSQLSASWLWSHVARCLLLLLC*EDASAL Trigger: TAGAGCACTGGCATCCTCCAAGCAGAGCAGCAGCAG...CAGACATCTGGCCACATGGCTCCATAGCCAGGAAGCTGAGAGCTGTGATTGCAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS-3UTR CAA 90 bp | GATGTCTGGAGAATCATCTTGCCTGCTGTGGCCAACTCCAGCTCCTGGGCTCAGATTAGAATTTTTCCTTaGAAGTCCCGAACACTGACA | + |
|
Preference number: 5 (lower is better) Translates to: DVWRIILPAVANSSSWAQIRIFP*KSRTLT Trigger: TGTCAGTGTTCGGGACTTCAAAGGAAAAATTCTAAT...CTGAGCCCAGGAGCTGGAGTTGGCCACAGCAGGCAAGATGATTCTCCAGACATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022816.15 |
||
| CDS GCA 72 bp | GAGGATGCCAGTGCTCTAGAAGTCTCACCAGGCTTCTaGTTCTTCACGGGCTTCTCTGGAACCGCTTGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: EDASALEVSPGF*FFTGFSGTACF Trigger: AAAGCAAGCGGTTCCAGAGAAGCCCGTGAAGAAGCAGAAGCCTGGTGAGACTTCTAGAGCACTGGCATCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022816.15 ENSMUST00000110504.2 |
||