RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STXBP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019790

Ensembl transcript IDs: ENSMUST00000038213.14, ENSMUST00000125200.8, ENSMUST00000136324.2, ENSMUST00000141722.8

Found 327 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGTAAGGACAGTGACCCAGTACAGACGTCCACAGGAGACAGTGTGTaGAGTTCACACCCCCACTCCCCTTCCCTTCCCGGCTTCCTTTGT +
Preference number: 1 (lower is better)
Translates to: RKDSDPVQTSTGDSV*SSHPHSPSLPGFLC
Trigger: ACAAAGGAAGCCGGGAAGGGAAGGGGAGTGGGGGTGTGAACTTCACACACTGTCTCCTGTGGACGTCTGTACTGGGTCACTGTCCTTACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp CCTGACTGCAGTACAGGCTGCATCCTCTCTAGGCTGTCATGCTACTaGAAGAACCAATCACTCAGTGTCTGCTGCCCTCCAATGCACACC +
Preference number: 1 (lower is better)
Translates to: PDCSTGCILSRLSCY*KNQSLSVCCPPMHT
Trigger: GGTGTGCATTGGAGGGCAGCAGACACTGAGTGATTGGTTCTTGCAGTAGCATGACAGCCTAGAGAGGATGCAGCCTGTACTGCAGTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp CCAGAGGAAGGAGAGACAGACGGACAAAGGTCAAAGCTCAGCCGCTaGATAGTCATCTCCAAGGCAGCAGCACACTTGGGCTTCAATCTC +
Preference number: 1 (lower is better)
Translates to: PEEGETDGQRSKLSR*IVISKAAAHLGFNL
Trigger: GAGATTGAAGCCCAAGTGTGCTGCTGCCTTGGAGATGACTATGCAGCGGCTGAGCTTTGACCTTTGTCCGTCTGTCTCTCCTTCCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp CTTCCGTTCACAGAATGCTCACAGCATCTGAAGCAAGAGCGATGGTaGCCACATTACTCTACAGCGGGCCAGAGGAAGGAGAGACAGACG +
Preference number: 1 (lower is better)
Translates to: LPFTECSQHLKQERW*PHYSTAGQRKERQT
Trigger: CGTCTGTCTCTCCTTCCTCTGGCCCGCTGTAGAGTAATGTGGGCACCATCGCTCTTGCTTCAGATGCTGTGAGCATTCTGTGAACGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 90 bp TTGGCTTGCTGGTGGCTACTGCTTTTTGCATCAAAAAGACAGGAGTaGGTTGGGAGGAGGCAGGCCATTTCAGACCAGTCCATGCCCTGG +
Preference number: 1 (lower is better)
Translates to: LACWWLLLFASKRQE*VGRRQAISDQSMPW
Trigger: CCAGGGCATGGACTGGTCTGAAATGGCCTGCCTCCTCCCAACCCACTCCTGTCTTTTTGATGCAAAAAGCAGTAGCCACCAGCAAGCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp AACTGGACAAGAGAGCCCTGCAGCTCTCCATGCGGCAGCAGTGTGTaGACTGAGATTAAACTGGCTCATCACCTGAGTGTACTGGAACTG +
Preference number: 1 (lower is better)
Translates to: NWTREPCSSPCGSSV*TEIKLAHHLSVLEL
Trigger: CAGTTCCAGTACACTCAGGTGATGAGCCAGTTTAATCTCAGTGCACACACTGCTGCCGCATGGAGAGCTGCAGGGCTCTCTTGTCCAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp GACAGGAGTGGGTTGGGAGGAGGCAGGCCATTTCAGACCAGTCCATaGCCTGGGCCAGTTATCACTGGGAACTGTCTTATTTACATAGTC +
Preference number: 1 (lower is better)
Translates to: DRSGLGGGRPFQTSP*PGPVITGNCLIYIV
Trigger: GACTATGTAAATAAGACAGTTCCCAGTGATAACTGGCCCAGGGCATGGACTGGTCTGAAATGGCCTGCCTCCTCCCAACCCACTCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp ACTAGACTCTTGGATAACTGGACAAGAGAGCCCTGCAGCTCTCCATaGGGCAGCAGTGTGTGCACTGAGATTAAACTGGCTCATCACCTG +
Preference number: 1 (lower is better)
Translates to: TRLLDNWTREPCSSP*GSSVCTEIKLAHHL
Trigger: CAGGTGATGAGCCAGTTTAATCTCAGTGCACACACTGCTGCCGCATGGAGAGCTGCAGGGCTCTCTTGTCCAGTTATCCAAGAGTCTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 90 bp GAGTGGGTTGGGAGGAGGCAGGCCATTTCAGACCAGTCCATGCCCTaGGCCAGTTATCACTGGGAACTGTCTTATTTACATAGTCATGTG +
Preference number: 1 (lower is better)
Translates to: EWVGRRQAISDQSMP*ASYHWELSYLHSHV
Trigger: CACATGACTATGTAAATAAGACAGTTCCCAGTGATAACTGGCCCAGGGCATGGACTGGTCTGAAATGGCCTGCCTCCTCCCAACCCACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 90 bp GATGTGAACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATaGAGGTTCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAA +
Preference number: 1 (lower is better)
Translates to: DVNRTQDRDGFSSPQ*RFSHSSTLHGYYME
Trigger: TTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGTTCACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 90 bp GTAGCTCATCAGACTAGACTCTTGGATAACTGGACAAGAGAGCCCTaGAGCTCTCCATGCGGCAGCAGTGTGTGCACTGAGATTAAACTG +
Preference number: 1 (lower is better)
Translates to: VAHQTRLLDNWTREP*SSPCGSSVCTEIKL
Trigger: CAGTTTAATCTCAGTGCACACACTGCTGCCGCATGGAGAGCTGCAGGGCTCTCTTGTCCAGTTATCCAAGAGTCTAGTCTGATGAGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 90 bp CCGGTTTGCACGCATGGGGAGTCTTCTCAGTTAAAGCCGTGTGACTaGGGTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGC +
Preference number: 1 (lower is better)
Translates to: PVCTHGESSQLKPCD*GKTVHDCAGKEVLS
Trigger: GCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCTTTAACTGAGAAGACTCCCCATGCGTGCAAACCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 90 bp CATGCGGCAGCAGTGTGTGCACTGAGATTAAACTGGCTCATCACCTaGGTGTACTGGAACTGTGAGCGAATGGAGGGCAGTTTTAAAAGG +
Preference number: 1 (lower is better)
Translates to: HAAAVCALRLNWLIT*VYWNCERMEGSFKR
Trigger: CCTTTTAAAACTGCCCTCCATTCGCTCACAGTTCCAGTACACTCAGGTGATGAGCCAGTTTAATCTCAGTGCACACACTGCTGCCGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 90 bp ATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATaGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATG +
Preference number: 1 (lower is better)
Translates to: ILLTTMQVLSLFHSA*LLHGNSPKMSDSAM
Trigger: CATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 90 bp TTGTTATTGTTAAAGTTCCTGAAACTTTGGCTTGCTGGTGGCTACTaGTTTTTGCATCAAAAAGACAGGAGTGGGTTGGGAGGAGGCAGG +
Preference number: 1 (lower is better)
Translates to: LLLLKFLKLWLAGGY*FLHQKDRSGLGGGR
Trigger: CCTGCCTCCTCCCAACCCACTCCTGTCTTTTTGATGCAAAAAGCAGTAGCCACCAGCAAGCCAAAGTTTCAGGAACTTTAACAATAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 90 bp TTACAACTTCTGGTTTATTGCCTCTCCCCACGTCGGATCAAACACTaGTGGCAGATACAACGGCACAAAGTCTTTTGGCATATGAAAGTT +
Preference number: 1 (lower is better)
Translates to: LQLLVYCLSPRRIKH*WQIQRHKVFWHMKV
Trigger: AACTTTCATATGCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 90 bp TGTCTACCTGAACTAACAGCAGAAGAACCCACAGGATGTTCTAAGTaGGGTCTTAAGGAAGCATTCTGGATAAAACTGCAGCATACTTGC +
Preference number: 1 (lower is better)
Translates to: CLPELTAEEPTGCSK*GLKEAFWIKLQHTC
Trigger: GCAAGTATGCTGCAGTTTTATCCAGAATGCTTCCTTAAGACCTCACTTAGAACATCCTGTGGGTTCTTCTGCTGTTAGTTCAGGTAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 90 bp TCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCATATaGAAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGAC +
Preference number: 1 (lower is better)
Translates to: SNTDGRYNGTKSFGI*KFNTGMIHRIVLQD
Trigger: GTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTTTCATATGCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR TCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGAGTTCATCTGTCAGCGTaGCCCCACTCAGTTCTCCGT +
Preference number: 2 (lower is better)
Translates to: LTLPLCMATTWKLPEDERVHLSA*PHSVLR
Trigger: ACGGAGAACTGAGTGGGGTCACGCTGACAGATGAAC...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR TCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACGATAAGCAGTCTGTTTaGGAGAGGGTGAGTGCAGAC +
Preference number: 2 (lower is better)
Translates to: MATTWKLPEDERLSYAPHDKQSV*ERVSAD
Trigger: GTCTGCACTCACCCTCTCTCAAACAGACTGCTTATC...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR GCA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGACTGAGGTAAAACAGTaGATGATTGTGCTGGGAAAG +
Preference number: 2 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPTEVKQ*MIVLGK
Trigger: CTTTCCCAGCACAATCATGCACTGTTTTACCTCAGT...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR GCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTTTCTCCGTTCGTCAATaGACAGCCAGCACACACTCT +
Preference number: 2 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMAFSVRQ*TASTHS
Trigger: AGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAA...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR GCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGATTGAGAGAGGGTGAGTaGAGACAGCTGCTCACAATG +
Preference number: 2 (lower is better)
Translates to: LTLPLCMATTWKLPEDERLREGE*RQLLTM
Trigger: CATTGTGAGCAGCTGTCTGCACTCACCCTCTCTCAA...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR TCA 90 bp GTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTGCTTAAAGCCGTGTGACTaGGGTAAAACAGTGCATGAT +
Preference number: 2 (lower is better)
Translates to: VMMRVEEDPARTRAVCVCLKPCD*GKTVHD
Trigger: ATCATGCACTGTTTTACCTCAGTCACACGGCTTTAA...GCACACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 90 bp GATGTTTTCTACGGGAGATATTTTGTAGCTCATCAGACTAGACTCTaGGATAACTGGACAAGAGAGCCCTGCAGCTCTCCATGCGGCAGC +
Preference number: 2 (lower is better)
Translates to: DVFYGRYFVAHQTRL*DNWTREPCSSPCGS
Trigger: GCTGCCGCATGGAGAGCTGCAGGGCTCTCTTGTCCAGTTATCCAAGAGTCTAGTCTGATGAGCTACAAAATATCTCCCGTAGAAAACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CAA 90 bp CATTCACTTTCCCAGGAAGCTACGCTACAGCTTTGCCCCTTTCATTaGCAGCAACTGTCTTCCGTTCACAGAATGCTCACAGCATCTGAA +
Preference number: 2 (lower is better)
Translates to: HSLSQEATLQLCPFH*QQLSSVHRMLTASE
Trigger: TTCAGATGCTGTGAGCATTCTGTGAACGGAAGACAGTTGCTGCAAATGAAAGGGGCAAAGCTGTAGCGTAGCTTCCTGGGAAAGTGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR-3UTR TCA 90 bp TATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTTAAAGCCGTGTGACTaGGGTAAAACAGTGCATGAT +
Preference number: 2 (lower is better)
Translates to: YVMMRVEEDPARTRAVCVLKPCD*GKTVHD
Trigger: ATCATGCACTGTTTTACCTCAGTCACACGGCTTTAA...CACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR GCA 90 bp CCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCACTGAGGTAAAACAGTaGATGATTGTGCTGGGAAAG +
Preference number: 2 (lower is better)
Translates to: PHVGSNTDGRYNGTKSFGTEVKQ*MIVLGK
Trigger: CTTTCCCAGCACAATCATGCACTGTTTTACCTCAGT...GCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR CCA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGATGGACTTACAACTTCTaGTTTATTGCCTCTCCCCAC +
Preference number: 2 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRWTYNF*FIASPH
Trigger: GTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCA...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 90 bp GTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATaGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACG +
Preference number: 2 (lower is better)
Translates to: VQIQSDLCGLTTSGL*PLPTSDQTLMADTT
Trigger: CGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR TCA 90 bp TCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGGGAAAACATAGGAACTaGACACAGTATGTGATGATG +
Preference number: 2 (lower is better)
Translates to: SLTLPLCMATTWKLPEDEGKHRN*TQYVMM
Trigger: CATCATCACATACTGTGTTCAGTTCCTATGTTTTCC...CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR GCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACACATCACCTTGTTTTaGTTTGGAAAACATAGGAAC +
Preference number: 2 (lower is better)
Translates to: LTLPLCMATTWKLPEDERHITLF*FGKHRN
Trigger: GTTCCTATGTTTTCCAAAGCAAAACAAGGTGATGTG...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR-3UTR CCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATCTTGTCAACATCTTCTaGATGTTCATCTGTCAGCGT +
Preference number: 2 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYLVNIF*MFICQR
Trigger: ACGCTGACAGATGAACATCCAGAAGATGTTGACAAG...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp AGTGACCCAGTACAGACGTCCACAGGAGACAGTGTGTaGAGTTCACACCCCCACTCCCCTTCCCTTCCCGGC +
Preference number: 3 (lower is better)
Translates to: SDPVQTSTGDSV*SSHPHSPSLPG
Trigger: GCCGGGAAGGGAAGGGGAGTGGGGGTGTGAACTTCACACACTGTCTCCTGTGGACGTCTGTACTGGGTCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp GGAGAGACAGACGGACAAAGGTCAAAGCTCAGCCGCTaGATAGTCATCTCCAAGGCAGCAGCACACTTGGGC +
Preference number: 3 (lower is better)
Translates to: GETDGQRSKLSR*IVISKAAAHLG
Trigger: GCCCAAGTGTGCTGCTGCCTTGGAGATGACTATGCAGCGGCTGAGCTTTGACCTTTGTCCGTCTGTCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp TCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATaGTCCGGTTTGCACGCATGGGGAGTCTTCTCAGTT +
Preference number: 3 (lower is better)
Translates to: SPFVNAQPAHTL*SGLHAWGVFSV
Trigger: AACTGAGAAGACTCCCCATGCGTGCAAACCGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp AGGACACAGGACAGGGACGGATTCTCCTCACCACAATaGAGGTTCTCTCACTCTTCCACTCTGCATGGCTAC +
Preference number: 3 (lower is better)
Translates to: RTQDRDGFSSPQ*RFSHSSTLHGY
Trigger: GTAGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp AGAGAGCCCTGCAGCTCTCCATGCGGCAGCAGTGTGTaGACTGAGATTAAACTGGCTCATCACCTGAGTGTA +
Preference number: 3 (lower is better)
Translates to: REPCSSPCGSSV*TEIKLAHHLSV
Trigger: TACACTCAGGTGATGAGCCAGTTTAATCTCAGTGCACACACTGCTGCCGCATGGAGAGCTGCAGGGCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp ACAGAATGCTCACAGCATCTGAAGCAAGAGCGATGGTaGCCACATTACTCTACAGCGGGCCAGAGGAAGGAG +
Preference number: 3 (lower is better)
Translates to: TECSQHLKQERW*PHYSTAGQRKE
Trigger: CTCCTTCCTCTGGCCCGCTGTAGAGTAATGTGGGCACCATCGCTCTTGCTTCAGATGCTGTGAGCATTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp TTGGATAACTGGACAAGAGAGCCCTGCAGCTCTCCATaGGGCAGCAGTGTGTGCACTGAGATTAAACTGGCT +
Preference number: 3 (lower is better)
Translates to: LDNWTREPCSSP*GSSVCTEIKLA
Trigger: AGCCAGTTTAATCTCAGTGCACACACTGCTGCCGCATGGAGAGCTGCAGGGCTCTCTTGTCCAGTTATCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp AGTACAGGCTGCATCCTCTCTAGGCTGTCATGCTACTaGAAGAACCAATCACTCAGTGTCTGCTGCCCTCCA +
Preference number: 3 (lower is better)
Translates to: STGCILSRLSCY*KNQSLSVCCPP
Trigger: TGGAGGGCAGCAGACACTGAGTGATTGGTTCTTGCAGTAGCATGACAGCCTAGAGAGGATGCAGCCTGTACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp GCTTTAGCAATCACAGCCCCTGACTGCAGTACAGGCTaGATCCTCTCTAGGCTGTCATGCTACTGCAAGAAC +
Preference number: 3 (lower is better)
Translates to: ALAITAPDCSTG*ILSRLSCYCKN
Trigger: GTTCTTGCAGTAGCATGACAGCCTAGAGAGGATGCAGCCTGTACTGCAGTCAGGGGCTGTGATTGCTAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp CCCGTCTCCCAGCATCTCCCACACTCTAAACATGTGTaGTCTTTCAGACCCGTCTTGCTGCCTTCCACAAAT +
Preference number: 3 (lower is better)
Translates to: PVSQHLPHSKHV*SFRPVLLPSTN
Trigger: ATTTGTGGAAGGCAGCAAGACGGGTCTGAAAGAGCACACATGTTTAGAGTGTGGGAGATGCTGGGAGACGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 72 bp TGGTGGCTACTGCTTTTTGCATCAAAAAGACAGGAGTaGGTTGGGAGGAGGCAGGCCATTTCAGACCAGTCC +
Preference number: 3 (lower is better)
Translates to: WWLLLFASKRQE*VGRRQAISDQS
Trigger: GGACTGGTCTGAAATGGCCTGCCTCCTCCCAACCCACTCCTGTCTTTTTGATGCAAAAAGCAGTAGCCACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 72 bp TTCACAGAATGCTCACAGCATCTGAAGCAAGAGCGATaGTGCCCACATTACTCTACAGCGGGCCAGAGGAAG +
Preference number: 3 (lower is better)
Translates to: FTECSQHLKQER*CPHYSTAGQRK
Trigger: CTTCCTCTGGCCCGCTGTAGAGTAATGTGGGCACCATCGCTCTTGCTTCAGATGCTGTGAGCATTCTGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR-3UTR CAA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACACAACTTCTGGTTTATaGCCTCTCCCCACGTCGGAT +
Preference number: 3 (lower is better)
Translates to: MATTWKLPEDERLSYAPHTTSGL*PLPTSD
Trigger: ATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGT...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp CCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTaGATGGCTACTACATGGAAACTCCCCGAAGATGAG +
Preference number: 3 (lower is better)
Translates to: PHHNAGSLTLPL*MATTWKLPEDE
Trigger: CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp CCCAGGAAGCTACGCTACAGCTTTGCCCCTTTCATTTaGAGCAACTGTCTTCCGTTCACAGAATGCTCACAG +
Preference number: 3 (lower is better)
Translates to: PRKLRYSFAPFI*SNCLPFTECSQ
Trigger: CTGTGAGCATTCTGTGAACGGAAGACAGTTGCTGCAAATGAAAGGGGCAAAGCTGTAGCGTAGCTTCCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 72 bp ACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATaGCTACTACATGGAAACTCCCCGAAGATGAGCGAC +
Preference number: 3 (lower is better)
Translates to: TTMQVLSLFHSA*LLHGNSPKMSD
Trigger: GTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp ACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATaGGCGACTCAGCTATGCGCCACACTTTTCCATGAA +
Preference number: 3 (lower is better)
Translates to: TLHGYYMETPRR*ATQLCATLFHE
Trigger: TTCATGGAAAAGTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp CTGTGTTGGTCAGGTCTACTTTTAGCTGAACTGATGTaGACAGGACACAGGACAGGGACGGATTCTCCTCAC +
Preference number: 3 (lower is better)
Translates to: LCWSGLLLAELM*TGHRTGTDSPH
Trigger: GTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGTTCACATCAGTTCAGCTAAAAGTAGACCTGACCAACACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp GCAACTGTCTTCCGTTCACAGAATGCTCACAGCATCTaGAGCAAGAGCGATGGTGCCCACATTACTCTACAG +
Preference number: 3 (lower is better)
Translates to: ATVFRSQNAHSI*SKSDGAHITLQ
Trigger: CTGTAGAGTAATGTGGGCACCATCGCTCTTGCTTCAGATGCTGTGAGCATTCTGTGAACGGAAGACAGTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp CTGTCATGCTACTGCAAGAACCAATCACTCAGTGTCTaGTGCCCTCCAATGCACACCACTCTTGGTTACAGA +
Preference number: 3 (lower is better)
Translates to: LSCYCKNQSLSV*CPPMHTTLGYR
Trigger: TCTGTAACCAAGAGTGGTGTGCATTGGAGGGCAGCAGACACTGAGTGATTGGTTCTTGCAGTAGCATGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp CCTTTCATTTGCAGCAACTGTCTTCCGTTCACAGAATaGTCACAGCATCTGAAGCAAGAGCGATGGTGCCCA +
Preference number: 3 (lower is better)
Translates to: PFICSNCLPFTE*SQHLKQERWCP
Trigger: TGGGCACCATCGCTCTTGCTTCAGATGCTGTGAGCATTCTGTGAACGGAAGACAGTTGCTGCAAATGAAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 72 bp CCACAGAATAGTCCTCCAGGACTTGTCAACATCTTCTaGATGTTCATCTGTCAGCGTGACCCCACTCAGTTC +
Preference number: 3 (lower is better)
Translates to: PQNSPPGLVNIF*MFICQRDPTQF
Trigger: GAACTGAGTGGGGTCACGCTGACAGATGAACATCCAGAAGATGTTGACAAGTCCTGGAGGACTATTCTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp CTGGTTTATTGCCTCTCCCCACGTCGGATCAAACACTaGTGGCAGATACAACGGCACAAAGTCTTTTGGCAT +
Preference number: 3 (lower is better)
Translates to: LVYCLSPRRIKH*WQIQRHKVFWH
Trigger: ATGCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CCA 72 bp ATTTCAGACCAGTCCATGCCCTGGGCCAGTTATCACTaGGAACTGTCTTATTTACATAGTCATGTGCAGCCC +
Preference number: 3 (lower is better)
Translates to: ISDQSMPWASYH*ELSYLHSHVQP
Trigger: GGGCTGCACATGACTATGTAAATAAGACAGTTCCCAGTGATAACTGGCCCAGGGCATGGACTGGTCTGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 72 bp ACGCATGGGGAGTCTTCTCAGTTAAAGCCGTGTGACTaGGGTAAAACAGTGCATGATTGTGCTGGGAAAGAA +
Preference number: 3 (lower is better)
Translates to: THGESSQLKPCD*GKTVHDCAGKE
Trigger: TTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCTTTAACTGAGAAGACTCCCCATGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp TGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGTTTaGGAGAGGGTGAGTGCAGACAGCTGCTCACAATGC +
Preference number: 3 (lower is better)
Translates to: CCFFTKTDKQSV*ERVSADSCSQC
Trigger: GCATTGTGAGCAGCTGTCTGCACTCACCCTCTCTCAAACAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp TCATGCTACTGCAAGAACCAATCACTCAGTGTCTGCTaGCCTCCAATGCACACCACTCTTGGTTACAGAAAA +
Preference number: 3 (lower is better)
Translates to: SCYCKNQSLSVC*PPMHTTLGYRK
Trigger: TTTTCTGTAACCAAGAGTGGTGTGCATTGGAGGGCAGCAGACACTGAGTGATTGGTTCTTGCAGTAGCATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 72 bp GCAGACAGCTGCTCACAATGCAGTCCAGATACAAAGTaGCCTTTGTGGACTTACAACTTCTGGTTTATTGCC +
Preference number: 3 (lower is better)
Translates to: ADSCSQCSPDTK*PLWTYNFWFIA
Trigger: GGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGTGAGCAGCTGTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp TTAAAGTTCCTGAAACTTTGGCTTGCTGGTGGCTACTaGTTTTTGCATCAAAAAGACAGGAGTGGGTTGGGA +
Preference number: 3 (lower is better)
Translates to: LKFLKLWLAGGY*FLHQKDRSGLG
Trigger: TCCCAACCCACTCCTGTCTTTTTGATGCAAAAAGCAGTAGCCACCAGCAAGCCAAAGTTTCAGGAACTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 72 bp GAACTAACAGCAGAAGAACCCACAGGATGTTCTAAGTaGGGTCTTAAGGAAGCATTCTGGATAAAACTGCAG +
Preference number: 3 (lower is better)
Translates to: ELTAEEPTGCSK*GLKEAFWIKLQ
Trigger: CTGCAGTTTTATCCAGAATGCTTCCTTAAGACCTCACTTAGAACATCCTGTGGGTTCTTCTGCTGTTAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR GCA 72 bp TGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTaGGTCCCTTTTACGTTATCTTCCCCAAATACATCA +
Preference number: 3 (lower is better)
Translates to: CMIVLGKKFSAK*VPFTLSSPNTS
Trigger: TGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR TCA 72 bp AAAGAGGCCACCCGTAAGCAACTCTGGAGACAATACTaGATTCATAGAAAAACTGAACCAGTAACTTCAGAC +
Preference number: 3 (lower is better)
Translates to: KEATRKQLWRQY*IHRKTEPVTSD
Trigger: GTCTGAAGTTACTGGTTCAGTTTTTCTATGAATTCAGTATTGTCTCCAGAGTTGCTTACGGGTGGCCTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CCA 72 bp GTTGTTATTGTTAAAGTTCCTGAAACTTTGGCTTGCTaGTGGCTACTGCTTTTTGCATCAAAAAGACAGGAG +
Preference number: 3 (lower is better)
Translates to: VVIVKVPETLAC*WLLLFASKRQE
Trigger: CTCCTGTCTTTTTGATGCAAAAAGCAGTAGCCACCAGCAAGCCAAAGTTTCAGGAACTTTAACAATAACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR TCA 72 bp CACATCACCTTGTTTTGCTTTGGAAAACATAGGAACTaGACACAGTATGTGATGATGAGAGTAGAAGAGGAT +
Preference number: 3 (lower is better)
Translates to: HITLFCFGKHRN*TQYVMMRVEED
Trigger: ATCCTCTTCTACTCTCATCATCACATACTGTGTTCAGTTCCTATGTTTTCCAAAGCAAAACAAGGTGATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR GCA 72 bp TTTGTTGTTATTGTTAAAGTTCCTGAAACTTTGGCTTaGTGGTGGCTACTGCTTTTTGCATCAAAAAGACAG +
Preference number: 3 (lower is better)
Translates to: FVVIVKVPETLA*WWLLLFASKRQ
Trigger: CTGTCTTTTTGATGCAAAAAGCAGTAGCCACCAGCAAGCCAAAGTTTCAGGAACTTTAACAATAACAACAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CCA 90 bp GTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTGAATGGGCTGAGGGTTaGAGCTGCCCACGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: VSVTPLSSPFVNAQPAHTEWAEG*SCPRGW
Trigger: CCACCCCCGTGGGCAGCTCCAACCCTCAGCCCATTC...AGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGGTCCAGGCGGGTGCTGCTaGTGTTGCTGCTGTTGCGAG +
Preference number: 4 (lower is better)
Translates to: PLSSPFVNAQPAHTLCSGPGGCC*CCCCCE
Trigger: CTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGG...ACCGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATCTGTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACGGTTCCCAGGCGGGTaGTGCTGCTGTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: ICQRDPTQFSVRQCTASTRFPGG*CCCCCC
Trigger: ACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCG...TGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGACAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATCTGTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACATGCTGCTGCTGTTGCTaGTGTTGCGAGGCCGAGGAC +
Preference number: 4 (lower is better)
Translates to: ICQRDPTQFSVRQCTASTCCCCC*CCEAED
Trigger: GTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCA...TGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGACAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCCAGGCGGGTGCTGCTaGTGTTGCTGCTGTTGCGAG +
Preference number: 4 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRPGGCC*CCCCCE
Trigger: CTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGG...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGGCCAGGCTGGTGATCTaGTGCGGGGGTTCTCCACCC +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKARLVI*CGGSPP
Trigger: GGGTGGAGAACCCCCGCAGCAGATCACCAGCCTGGC...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTGAATGGGCTGAGGGTTaGAGCTGCCCACGGGGGTGG +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMAEWAEG*SCPRGW
Trigger: CCACCCCCGTGGGCAGCTCCAACCCTCAGCCCATTC...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGGACACAATCACTGGCTaGAGGAGTCTCTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPDTITG*RSLCSG
Trigger: GCCTGAGCAGAGACTCCTTCAGCCAGTGATTGTGTC...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp GTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTGCGTCCCTGGCCGAGGACGAGCCTaGGGTCAGGCCGTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: VKQCMIVLGKKFSAKCVPGRGRA*GQAVQH
Trigger: GTGCTGGACGGCCTGACCGCAGGCTCGTCCTCGGCC...AGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGAGGGTGCTGCTGCTGTTaGTGCTGTTGCGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: LTLPLCMATTWKLPEDERGCCCC*CCCEAE
Trigger: CTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCC...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGTCGAGGGCCAGCCTaGCTCGGGCAAGTTCACCCA +
Preference number: 4 (lower is better)
Translates to: SLTLPLCMATTWKLPEDERRGPA*LGQVHP
Trigger: TGGGTGAACTTGCCCGAGCCAGGCTGGCCCTCGACG...CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTACGAAGCCCGTCAGATaGGCTGCTGCTGGTAGACGG +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMATKPVR*AAAGRR
Trigger: CCGTCTACCAGCAGCAGCTCATCTGACGGGCTTCGT...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACGACAGTCCCTTCGGTaGTATCACACAGGCCCGCTC +
Preference number: 4 (lower is better)
Translates to: LTLPLCMATTWKLPEDERRQSLR*YHTGPL
Trigger: GAGCGGGCCTGTGTGATATCACCGAAGGGACTGTCG...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACAGAGGAGGGGGACACTaGGACAGGTCGCCGCTTTTT +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHRGGGH*DRSPLF
Trigger: AAAAAGCGGCGACCTGTCTCAGTGTCCCCCTCCTCT...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCGAGTTGGATCACTGCTaGTCCGCTGTCGTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRELDHC*SAVVLA
Trigger: TGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTC...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGAGACTGGAGCGTCTCCTaGATCTCCGGCTCCCGGTTC +
Preference number: 4 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRDWSVS*ISGSRF
Trigger: GAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTC...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGAACGAAGCCCGTCAGATaGGCTGCTGCTGGTAGACGG +
Preference number: 4 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRTKPVR*AAAGRR
Trigger: CCGTCTACCAGCAGCAGCTCATCTGACGGGCTTCGT...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ATCTGTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACAGCTCTGGGTTGGCAGTaGCATGACCTTTGCTTGCTT +
Preference number: 4 (lower is better)
Translates to: ICQRDPTQFSVRQCTASTALGWQ*HDLCLL
Trigger: AAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGC...TGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGACAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGATTCCCAGGCGGGTGCTaGTGCTGTTGCTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRFPGGC*CCCCCC
Trigger: GCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAA...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp GTATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGAGTTGGATCACTGCTaGTCCGCTGTCGTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: VCDDESRRGSRTHTSCVCELDHC*SAVVLA
Trigger: TGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTC...ACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCACGTCGGATCAAACGACTGGAGCGTCTCCTaGATCTCCGGCTCCCGGTTC +
Preference number: 4 (lower is better)
Translates to: PLWTYNFWFIASPHVGSNDWSVS*ISGSRF
Trigger: GAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTC...GTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACTGGAAGTGTTCGGACTaGAGCGTCTCCTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHWKCSD*SVSWIS
Trigger: GGAGATCCAGGAGACGCTCCAGTCCGAACACTTCCA...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCACGTCGGATCAAACGTTGTGCGAGGCTCCTaGAGGCCTTTCCCGAGGACG +
Preference number: 4 (lower is better)
Translates to: PLWTYNFWFIASPHVGSNVVRGS*RPFPRT
Trigger: CGTCCTCGGGAAAGGCCTCCAGGAGCCTCGCACAAC...GTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AGCCGTGTGACTGAGGTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCACGTCGAGGGCCAGCCTaGCTCGGGCAAGTTCACCCA +
Preference number: 4 (lower is better)
Translates to: SRVTEVKQCMIVLGKKFSRRGPA*LGQVHP
Trigger: TGGGTGAACTTGCCCGAGCCAGGCTGGCCCTCGACG...TGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGCATAATGACATAGCCTaGGAGTGTGAAGGACTCCAC +
Preference number: 4 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPHNDIA*ECEGLH
Trigger: GTGGAGTCCTTCACACTCTCAGGCTATGTCATTATG...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp GTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCATAATGACATAGCCTaGGAGTGTGAAGGACTCCAC +
Preference number: 4 (lower is better)
Translates to: VSVTPLSSPFVNAQPAHTHNDIA*ECEGLH
Trigger: GTGGAGTCCTTCACACTCTCAGGCTATGTCATTATG...AGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp GTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCCCAATTACCACCATTaGTGGGCCATTCCTTTTTGC +
Preference number: 4 (lower is better)
Translates to: VSVTPLSSPFVNAQPAHTPNYHH*WAIPFC
Trigger: GCAAAAAGGAATGGCCCATCAATGGTGGTAATTGGG...AGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCCCACACCAACTGAATaGCCAGCTCTGTCTGATAGC +
Preference number: 4 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTPTPTE*PALSDS
Trigger: GCTATCAGACAGAGCTGGTCATTCAGTTGGTGTGGG...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCACGTCGGATCAAACTGCTGTTGCTGCTGTTaGGAGGCCGAGGACGAGCCT +
Preference number: 4 (lower is better)
Translates to: PLWTYNFWFIASPHVGSNCCCCC*EAEDEP
Trigger: AGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCA...GTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp GTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTGCTGTTTCCTCGCTCAGTaGCCACATAGAGCCACTTAC +
Preference number: 4 (lower is better)
Translates to: VMMRVEEDPARTRAVCVCCFLAQ*PHRATY
Trigger: GTAAGTGGCTCTATGTGGGCACTGAGCGAGGAAACA...GCACACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTATCAGGAACTGGAGTTaGATCACTGCTGCTCCGCTG +
Preference number: 4 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTIRNWS*ITAAPL
Trigger: CAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGAT...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGGCTTCCCCTCGTCCATaGGATTGTCACTTATATGCA +
Preference number: 4 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPASPRP*DCHLYA
Trigger: TGCATATAAGTGACAATCCCATGGACGAGGGGAAGC...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGCAGCATCCTGCTCTCTaGGCACCAGGAGATGATCTG +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKQHPAL*APGDDL
Trigger: CAGATCATCTCCTGGTGCCCAGAGAGCAGGATGCTG...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATCTGTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACAACATTAAGCAGCCCGTaGCATCCAGAAATGCCATCC +
Preference number: 4 (lower is better)
Translates to: ICQRDPTQFSVRQCTASTTLSSP*HPEMPS
Trigger: GGATGGCATTTCTGGATGCCACGGGCTGCTTAATGT...TGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGACAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGCTGCGCTGGACATCATaGCTGCCGTCCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: YVMMRVEEDPARTRAVCVLRWTS*LPSFLP
Trigger: TGGAAGAAAGGACGGCAGCCATGATGTCCAGCGCAG...CACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp TGGTTTATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCCTTAAAGCACCAGTCTaGGTTCCTACCGCCAGGATC +
Preference number: 4 (lower is better)
Translates to: WFIASPHVGSNTDGRYNGLKAPV*VPTARI
Trigger: GATCCTGGCGGTAGGAACTCAGACTGGTGCTTTAAG...GCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp TGGTTTATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCGCTCTGGGTTGGCAGTaGCATGACCTTTGCTTGCTT +
Preference number: 4 (lower is better)
Translates to: WFIASPHVGSNTDGRYNGALGWQ*HDLCLL
Trigger: AAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGC...GCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACTTTCCAGCACTGCTGTaGTTTTCCCGTGCATCACTG +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHFPALL*FSRASL
Trigger: CAGTGATGCACGGGAAAAGCACAGCAGTGCTGGAAA...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTGACACTCCAGCTATaGACAGCATCCTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: LTLPLCMATTWKLPEDERLTLQL*TASCSL
Trigger: CAGAGAGCAGGATGCTGTGCATAGCTGGAGTGTCAG...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCGCCAGGCTGGTGATCTaGTGCGGGGGTTCTCCACCC +
Preference number: 4 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLARLVI*CGGSPP
Trigger: GGGTGGAGAACCCCCGCAGCAGATCACCAGCCTGGC...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACGATGTTCTGCTTGTATaGACAGCTCTGGGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHDVLLV*TALGWQ
Trigger: CTGCCAACCCAGAGCTGTGCATACAAGCAGAACATC...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGATCAGGAACTGGAGTTaGATCACTGCTGCTCCGCTG +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKIRNWS*ITAAPL
Trigger: CAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGAT...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGGTATGAAGAACCGGAAGTaGGAGATTTGCAGCGATCCT +
Preference number: 4 (lower is better)
Translates to: PLSSPFVNAQPAHTLCSGMKNRK*EICSDP
Trigger: AGGATCGCTGCAAATCTCCCACTTCCGGTTCTTCAT...ACCGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CCA 90 bp GTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTGAAAGTCATGATATaGCCATTGGCACAGAAGCAG +
Preference number: 4 (lower is better)
Translates to: VSVTPLSSPFVNAQPAHTLKVMI*PLAQKQ
Trigger: CTGCTTCTGTGCCAATGGCCATATCATGACTTTCAG...AGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGGTTCTGTTTGGTGCTTCTaGTGTCTCTACAGGCGTGAA +
Preference number: 4 (lower is better)
Translates to: PLSSPFVNAQPAHTLCSGSVWCF*CLYRRE
Trigger: TTCACGCCTGTAGAGACACCAGAAGCACCAAACAGA...ACCGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp GTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTGCTCTGTTTGGTGCTTCTaGTGTCTCTACAGGCGTGAA +
Preference number: 4 (lower is better)
Translates to: VMMRVEEDPARTRAVCVCSVWCF*CLYRRE
Trigger: TTCACGCCTGTAGAGACACCAGAAGCACCAAACAGA...GCACACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGCGCTGGACATCATaGCTGCCGTCCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRLRWTS*LPSFLP
Trigger: TGGAAGAAAGGACGGCAGCCATGATGTCCAGCGCAG...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCTTCTCACTAATTTCCTaGGAAGAGGAGGGGGACACT +
Preference number: 4 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRFSLIS*EEEGDT
Trigger: AGTGTCCCCCTCCTCTTCTCAGGAAATTAGTGAGAA...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp GTATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGCTGTGCTTTTCCCGTaGATCACTGTTAAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: VCDDESRRGSRTHTSCVCAVLFP*ITVKQG
Trigger: ACCCTGCTTAACAGTGATGCACGGGAAAAGCACAGC...ACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGGCTGTGCTTTTCCCGTaGATCACTGTTAAGCAGGGT +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKAVLFP*ITVKQG
Trigger: ACCCTGCTTAACAGTGATGCACGGGAAAAGCACAGC...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCCGTGGCATCCAGAAATaGCATCCTCAAGATTGCACC +
Preference number: 4 (lower is better)
Translates to: PHVGSNTDGRYNGTKSFGRGIQK*HPQDCT
Trigger: GGTGCAATCTTGAGGATGGCATTTCTGGATGCCACG...GCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTCGTGGCATCCAGAAATaGCATCCTCAAGATTGCACC +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMARGIQK*HPQDCT
Trigger: GGTGCAATCTTGAGGATGGCATTTCTGGATGCCACG...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCACATTAAGCAGCCCGTaGCATCCAGAAATGCCATCC +
Preference number: 4 (lower is better)
Translates to: PHVGSNTDGRYNGTKSFGTLSSP*HPEMPS
Trigger: GGATGGCATTTCTGGATGCCACGGGCTGCTTAATGT...GCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp GTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTGCCTGAAAGTCATGATATaGCCATTGGCACAGAAGCAG +
Preference number: 4 (lower is better)
Translates to: VMMRVEEDPARTRAVCVCLKVMI*PLAQKQ
Trigger: CTGCTTCTGTGCCAATGGCCATATCATGACTTTCAG...GCACACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACGAAGAAGCCTCTGTTTaGTGCTTCTGGTGTCTCTAC +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHEEASV*CFWCLY
Trigger: GTAGAGACACCAGAAGCACCAAACAGAGGCTTCTTC...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 72 bp AGCCGCTGCATAGTCATCTCCAAGGCAGCAGCACACTaGGGCTTCAATCTCACCCCAGAACAAACACTGAAA +
Preference number: 4 (lower is better)
Translates to: SRCIVISKAAAH*GFNLTPEQTLK
Trigger: TTTCAGTGTTTGTTCTGGGGTGAGATTGAAGCCCAAGTGTGCTGCTGCCTTGGAGATGACTATGCAGCGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR TCA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCTTTCTTCCAAGTCACTaGGCTTCTGTCCTCTTTCGT +
Preference number: 4 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRFLPSH*ASVLFR
Trigger: ACGAAAGAGGACAGAAGCTCAGTGACTTGGAAGAAA...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCTTCAGCATCATCTCATaGGCATGTTTGGAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRFSIIS*ACLEKE
Trigger: CTCCTTCTCCAAACATGCTCATGAGATGATGCTGAA...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACGTTATCTTCCCCAAATACATCAGTGATATCAACAAGGAAACTTCTTTTTCCTGGCCGAGGACGAGCCTaGGGTCAGGCCGTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TLSSPNTSVISTRKLLFPGRGRA*GQAVQH
Trigger: GTGCTGGACGGCCTGACCGCAGGCTCGTCCTCGGCC...AGGAAAAAGAAGTTTCCTTGTTGATATCACTGATGTATTTGGGGAAGATAACGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTGCTGTTGCTGCTGTTaGGAGGCCGAGGACGAGCCT +
Preference number: 4 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLCCCCC*EAEDEP
Trigger: AGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCA...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TTCTCAGCAAAGTGCGTCCCTTTTACGTTATCTTCCCCAAATACATCAGTGATAGGGTGCTGCTGCTGTTaGTGCTGTTGCGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: FSAKCVPFTLSSPNTSVIGCCCC*CCCEAE
Trigger: CTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCC...TATCACTGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TTCTCAGCAAAGTGCGTCCCTTTTACGTTATCTTCCCCAAATACATCAGTGATACGGTTCCCAGGCGGGTaGTGCTGCTGTTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: FSAKCVPFTLSSPNTSVIRFPGG*CCCCCC
Trigger: ACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCG...TATCACTGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGTTTCCAGCACTGCTGTaGTTTTCCCGTGCATCACTG +
Preference number: 4 (lower is better)
Translates to: SLTLPLCMATTWKLPEDEFPALL*FSRASL
Trigger: CAGTGATGCACGGGAAAAGCACAGCAGTGCTGGAAA...CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATCTGTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACATCCAACAGAGTAAAGTaGAGGAATAAGATCCACAGG +
Preference number: 4 (lower is better)
Translates to: ICQRDPTQFSVRQCTASTSNRVK*RNKIHR
Trigger: CCTGTGGATCTTATTCCTGCACTTTACTCTGTTGGA...TGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCTGGGCCATTCCTTTTTaGTGTAACCTTGACGCTTCT +
Preference number: 4 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRWAIPF*CNLDAS
Trigger: AGAAGCGTCAAGGTTACAGCAAAAAGGAATGGCCCA...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGGCTTCCCCTCGTCCATaGGATTGTCACTTATATGCA +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKASPRP*DCHLYA
Trigger: TGCATATAAGTGACAATCCCATGGACGAGGGGAAGC...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGGGGCTGCTCACCCTCTaGAGTATCCACATCATTTAT +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKGLLTL*SIHIIY
Trigger: ATAAATGATGTGGATACTCCAGAGGGTGAGCAGCCC...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACAATGAAGAGCAGAGATaGTTTCCCGGGACTCTTTGT +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHNEEQR*FPGTLC
Trigger: ACAAAGAGTCCCGGGAAACCATCTCTGCTCTTCATT...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTGAAGAAGCCTCTGTTTaGTGCTTCTGGTGTCTCTAC +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMAEEASV*CFWCLY
Trigger: GTAGAGACACCAGAAGCACCAAACAGAGGCTTCTTC...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 72 bp TCCCAGGAAGCTACGCTACAGCTTTGCCCCTTTCATTaGCAGCAACTGTCTTCCGTTCACAGAATGCTCACA +
Preference number: 4 (lower is better)
Translates to: SQEATLQLCPFH*QQLSSVHRMLT
Trigger: TGTGAGCATTCTGTGAACGGAAGACAGTTGCTGCAAATGAAAGGGGCAAAGCTGTAGCGTAGCTTCCTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR TCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACACCAGGAGATGATCTaGATGGCATATGGATCTTCA +
Preference number: 4 (lower is better)
Translates to: LTLPLCMATTWKLPEDERHQEMI*MAYGSS
Trigger: TGAAGATCCATATGCCATTCAGATCATCTCCTGGTG...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACAACTCCGCGATCTGCTaGAGGAATTGTCTTTTACAT +
Preference number: 4 (lower is better)
Translates to: MATTWKLPEDERLSYAPHNSAIC*RNCLLH
Trigger: ATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTT...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TTCTCAGCAAAGTGCGTCCCTTTTACGTTATCTTCCCCAAATACATCAGTGATATTCCCAGGCGGGTGCTaGTGCTGTTGCTGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: FSAKCVPFTLSSPNTSVIFPGGC*CCCCCC
Trigger: GCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAA...TATCACTGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGTTTGGAGAAGGAGTCTaGGCTGGACATCATGGCTGC +
Preference number: 4 (lower is better)
Translates to: SSEKGQLAAFSLRLISSLFGEGV*AGHHGC
Trigger: GCAGCCATGATGTCCAGCGCAGACTCCTTCTCCAAA...CAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TGGTTTATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACTCTTTGTCAATGCTaGTTACACTTGAACTCCGCG +
Preference number: 4 (lower is better)
Translates to: WFIASPHVGSNTDGRYNGTLCQC*LHLNSA
Trigger: CGCGGAGTTCAAGTGTAACCAGCATTGACAAAGAGT...GCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGCAATATAGTACCGCTTaGAGACACAATCACTGGCTG +
Preference number: 4 (lower is better)
Translates to: YVMMRVEEDPARTRAVCVQYSTA*RHNHWL
Trigger: CAGCCAGTGATTGTGTCTCCAAGCGGTACTATATTG...CACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGGAGAGGCCTCAAGCTTaGCAAACTGAAAGTCATGAT +
Preference number: 4 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKERPQA*QTESHD
Trigger: ATCATGACTTTCAGTTTGCCAAGCTTGAGGCCTCTC...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGAGAGAGGCCTCAAGCTTaGCAAACTGAAAGTCATGAT +
Preference number: 4 (lower is better)
Translates to: LTLPLCMATTWKLPEDERERPQA*QTESHD
Trigger: ATCATGACTTTCAGTTTGCCAAGCTTGAGGCCTCTC...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp TGGTTTATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCGAGAAAGTCAACGATTaGATAGTCCATTTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: WFIASPHVGSNTDGRYNGEKVND*IVHFQH
Trigger: GTGCTGGAAATGGACTATTCAATCGTTGACTTTCTC...GCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTGAGAAAGTCAACGATTaGATAGTCCATTTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMAEKVND*IVHFQH
Trigger: GTGCTGGAAATGGACTATTCAATCGTTGACTTTCTC...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp CCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCAACTCCGCGATCTGCTaGAGGAATTGTCTTTTACAT +
Preference number: 4 (lower is better)
Translates to: PHVGSNTDGRYNGTKSFGNSAIC*RNCLLH
Trigger: ATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTT...GCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp AGCCGTGTGACTGAGGTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCATGTTTCCTCGCTCAGTaGCCACATAGAGCCACTTAC +
Preference number: 4 (lower is better)
Translates to: SRVTEVKQCMIVLGKKFSCFLAQ*PHRATY
Trigger: GTAAGTGGCTCTATGTGGGCACTGAGCGAGGAAACA...TGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTTCCAACAGAGTAAAGTaGAGGAATAAGATCCACAGG +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMASNRVK*RNKIHR
Trigger: CCTGTGGATCTTATTCCTGCACTTTACTCTGTTGGA...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTGACATGACCTTTGCTTaGTTTTCAGAGCATATCACT +
Preference number: 4 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTDMTFA*FSEHIT
Trigger: AGTGATATGCTCTGAAAAGCAAGCAAAGGTCATGTC...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTTCATTAATCAGGAACTaGAGTTGGATCACTGCTGCT +
Preference number: 4 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMASLIRN*SWITAA
Trigger: AGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGA...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp GTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTGCGTCCCTAGGCTTGCATGGCTCTaGCTTCTTCCCATCCTTCAA +
Preference number: 4 (lower is better)
Translates to: VKQCMIVLGKKFSAKCVPRLAWL*LLPILQ
Trigger: TTGAAGGATGGGAAGAAGCCAGAGCCATGCAAGCCT...AGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTAACAACCACAGCATATaGTTCCTGAAAATCGTTTGG +
Preference number: 4 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTNNHSI*FLKIVW
Trigger: CCAAACGATTTTCAGGAACCATATGCTGTGGTTGTT...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGTGGAGACACAATCACTaGCTGAAGGAGTCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: SSEKGQLAAFSLRLISSLWRHNH*LKESLL
Trigger: GAGCAGAGACTCCTTCAGCCAGTGATTGTGTCTCCA...CAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ATGGCAGATACAACGGCACAAAGTCTTTTGGCATATGAAAGTTTAATACAGGAAGTTGTGCGAGGCTCCTaGAGGCCTTTCCCGAGGACG +
Preference number: 4 (lower is better)
Translates to: MADTTAQSLLAYESLIQEVVRGS*RPFPRT
Trigger: CGTCCTCGGGAAAGGCCTCCAGGAGCCTCGCACAAC...TTCCTGTATTAAACTTTCATATGCCAAAAGACTTTGTGCCGTTGTATCTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp AGCCGTGTGACTGAGGTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCACCCAATTACCACCATTaGTGGGCCATTCCTTTTTGC +
Preference number: 4 (lower is better)
Translates to: SRVTEVKQCMIVLGKKFSPNYHH*WAIPFC
Trigger: GCAAAAAGGAATGGCCCATCAATGGTGGTAATTGGG...TGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ATGGCAGATACAACGGCACAAAGTCTTTTGGCATATGAAAGTTTAATACAGGAACGACAGTCCCTTCGGTaGTATCACACAGGCCCGCTC +
Preference number: 4 (lower is better)
Translates to: MADTTAQSLLAYESLIQERQSLR*YHTGPL
Trigger: GAGCGGGCCTGTGTGATATCACCGAAGGGACTGTCG...TTCCTGTATTAAACTTTCATATGCCAAAAGACTTTGTGCCGTTGTATCTGCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATAGAGGAGGGGGACACTaGGACAGGTCGCCGCTTTTT +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYRGGGH*DRSPLF
Trigger: AAAAAGCGGCGACCTGTCTCAGTGTCCCCCTCCTCT...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCACCGAGCCATCAGCATaGCCTGTAATAATTATTTCT +
Preference number: 4 (lower is better)
Translates to: PHVGSNTDGRYNGTKSFGTEPSA*PVIIIS
Trigger: AGAAATAATTATTACAGGGCATGCTGATGGCTCGGT...GCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TTCTCAGCAAAGTGCGTCCCTTTTACGTTATCTTCCCCAAATACATCAGTGATACAGCATCCTGCTCTCTaGGCACCAGGAGATGATCTG +
Preference number: 4 (lower is better)
Translates to: FSAKCVPFTLSSPNTSVIQHPAL*APGDDL
Trigger: CAGATCATCTCCTGGTGCCCAGAGAGCAGGATGCTG...TATCACTGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 72 bp CAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATaGCCTCTCCCCACGTCGGATCAAACACTGATGGCA +
Preference number: 4 (lower is better)
Translates to: QSDLCGLTTSGL*PLPTSDQTLMA
Trigger: TGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 72 bp TACGGGAGATATTTTGTAGCTCATCAGACTAGACTCTaGGATAACTGGACAAGAGAGCCCTGCAGCTCTCCA +
Preference number: 4 (lower is better)
Translates to: YGRYFVAHQTRL*DNWTREPCSSP
Trigger: TGGAGAGCTGCAGGGCTCTCTTGTCCAGTTATCCAAGAGTCTAGTCTGATGAGCTACAAAATATCTCCCGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR GCA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCGTCCATTTCCAGCACTaGTGTGCTTTTCCCGTGCAT +
Preference number: 4 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLVHFQH*CAFPVH
Trigger: ATGCACGGGAAAAGCACAGCAGTGCTGGAAATGGAC...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp GTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTGCGTCCCTTGGGCCATTCCTTTTTaGTGTAACCTTGACGCTTCT +
Preference number: 4 (lower is better)
Translates to: VKQCMIVLGKKFSAKCVPWAIPF*CNLDAS
Trigger: AGAAGCGTCAAGGTTACAGCAAAAAGGAATGGCCCA...AGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGGGGACTCTTTGTCAATaGTGGTTACACTTGAACTCC +
Preference number: 4 (lower is better)
Translates to: SSEKGQLAAFSLRLISSLGTLCQ*WLHLNS
Trigger: GGAGTTCAAGTGTAACCAGCATTGACAAAGAGTCCC...CAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCAGGCTTGCATGGCTCTaGCTTCTTCCCATCCTTCAA +
Preference number: 4 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLRLAWL*LLPILQ
Trigger: TTGAAGGATGGGAAGAAGCCAGAGCCATGCAAGCCT...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCATTGTATGCACAGCTCTaGGTTGGCAGTGACATGACC +
Preference number: 4 (lower is better)
Translates to: RYKVTFVDLQLLVYCLSPLYAQL*VGSDMT
Trigger: GGTCATGTCACTGCCAACCCAGAGCTGTGCATACAA...TGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
3UTR CAA 72 bp AAATCATTCACTTTCCCAGGAAGCTACGCTACAGCTTaGCCCCTTTCATTTGCAGCAACTGTCTTCCGTTCA +
Preference number: 4 (lower is better)
Translates to: KSFTFPGSYATA*PLSFAATVFRS
Trigger: TGAACGGAAGACAGTTGCTGCAAATGAAAGGGGCAAAGCTGTAGCGTAGCTTCCTGGGAAAGTGAATGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR TCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATCCCACACCAACTGAATaGCCAGCTCTGTCTGATAGC +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYPTPTE*PALSDS
Trigger: GCTATCAGACAGAGCTGGTCATTCAGTTGGTGTGGG...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp AGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCATTCTCACTAATTTCCTaGGAAGAGGAGGGGGACACT +
Preference number: 4 (lower is better)
Translates to: RYKVTFVDLQLLVYCLSPFSLIS*EEEGDT
Trigger: AGTGTCCCCCTCCTCTTCTCAGGAAATTAGTGAGAA...TGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp AAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGACTTGTCAACATCTCTGACACTCCAGCTATaGACAGCATCCTGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: KFNTGMIHRIVLQDLSTSLTLQL*TASCSL
Trigger: CAGAGAGCAGGATGCTGTGCATAGCTGGAGTGTCAG...AGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp AGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCAGAGGTTGAGCAGTACTaGTTTCTGGAGGTAGTCAAC +
Preference number: 4 (lower is better)
Translates to: RYKVTFVDLQLLVYCLSPEVEQY*FLEVVN
Trigger: GTTGACTACCTCCAGAAAGCAGTACTGCTCAACCTC...TGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTTTGGAGAAGGAGTCTaGGCTGGACATCATGGCTGC +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYFGEGV*AGHHGC
Trigger: GCAGCCATGATGTCCAGCGCAGACTCCTTCTCCAAA...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGAGAAAACTTTCTGCTTTaGGTCTTCACCTTTTCTATA +
Preference number: 4 (lower is better)
Translates to: LTLPLCMATTWKLPEDERENFLL*VFTFSI
Trigger: TATAGAAAAGGTGAAGACCCAAAGCAGAAAGTTTTC...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
3UTR CAA 72 bp AATACAGGAATGATCCACAGAATAGTCCTCCAGGACTaGTCAACATCTTCTGGATGTTCATCTGTCAGCGTG +
Preference number: 4 (lower is better)
Translates to: NTGMIHRIVLQD*STSSGCSSVSV
Trigger: CACGCTGACAGATGAACATCCAGAAGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ACGTTATCTTCCCCAAATACATCAGTGATATCAACAAGGAAACTTCTTTTTCCTGACACAATCACTGGCTaGAGGAGTCTCTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: TLSSPNTSVISTRKLLFPDTITG*RSLCSG
Trigger: GCCTGAGCAGAGACTCCTTCAGCCAGTGATTGTGTC...AGGAAAAAGAAGTTTCCTTGTTGATATCACTGATGTATTTGGGGAAGATAACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATGTCCATTTCCAGCACTaGTGTGCTTTTCCCGTGCAT +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYVHFQH*CAFPVH
Trigger: ATGCACGGGAAAAGCACAGCAGTGCTGGAAATGGAC...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCGGGACTCTTTGTCAATaGTGGTTACACTTGAACTCC +
Preference number: 4 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLGTLCQ*WLHLNS
Trigger: GGAGTTCAAGTGTAACCAGCATTGACAAAGAGTCCC...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp AGCCGTGTGACTGAGGTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGACATGACCTTTGCTTaGTTTTCAGAGCATATCACT +
Preference number: 4 (lower is better)
Translates to: SRVTEVKQCMIVLGKKFSDMTFA*FSEHIT
Trigger: AGTGATATGCTCTGAAAAGCAAGCAAAGGTCATGTC...TGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGGATGTTCTGCTTGTATaGACAGCTCTGGGTTGGCAG +
Preference number: 4 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLDVLLV*TALGWQ
Trigger: CTGCCAACCCAGAGCTGTGCATACAAGCAGAACATC...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACGTTATCTTCCCCAAATACATCAGTGATATCAACAAGGAAACTTCTTTTTCCTTGGAAGTGTTCGGACTaGAGCGTCTCCTGGATCTCC +
Preference number: 4 (lower is better)
Translates to: TLSSPNTSVISTRKLLFPWKCSD*SVSWIS
Trigger: GGAGATCCAGGAGACGCTCCAGTCCGAACACTTCCA...AGGAAAAAGAAGTTTCCTTGTTGATATCACTGATGTATTTGGGGAAGATAACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGACTTGTCAACATCTACAGTCTTGCAGAGTTaGAAGTGTTCGGACTGGAGC +
Preference number: 4 (lower is better)
Translates to: KFNTGMIHRIVLQDLSTSTVLQS*KCSDWS
Trigger: GCTCCAGTCCGAACACTTCCAACTCTGCAAGACTGT...AGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp CCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCACGTCGGATCAAACTCTTTGCTAGATCATTaGCTACCATCTTGGAAAACT +
Preference number: 4 (lower is better)
Translates to: PLWTYNFWFIASPHVGSNSLLDH*LPSWKT
Trigger: AGTTTTCCAAGATGGTAGCCAATGATCTAGCAAAGA...GTTTGATCCGACGTGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGGAGACACAATCACTaGCTGAAGGAGTCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYWRHNH*LKESLL
Trigger: GAGCAGAGACTCCTTCAGCCAGTGATTGTGTCTCCA...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGTTGTATGCACAGCTCTaGGTTGGCAGTGACATGACC +
Preference number: 4 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLLYAQL*VGSDMT
Trigger: GGTCATGTCACTGCCAACCCAGAGCTGTGCATACAA...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp AAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGACTTGTCAACATCTGAGGTTGAGCAGTACTaGTTTCTGGAGGTAGTCAAC +
Preference number: 4 (lower is better)
Translates to: KFNTGMIHRIVLQDLSTSEVEQY*FLEVVN
Trigger: GTTGACTACCTCCAGAAAGCAGTACTGCTCAACCTC...AGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ATGGCAGATACAACGGCACAAAGTCTTTTGGCATATGAAAGTTTAATACAGGAAGTCTCGGTGATGTTCTaGTTGTATGCACAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: MADTTAQSLLAYESLIQEVSVMF*LYAQLW
Trigger: CCAGAGCTGTGCATACAAGCAGAACATCACCGAGAC...TTCCTGTATTAAACTTTCATATGCCAAAAGACTTTGTGCCGTTGTATCTGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGATCTCACATTCCATATaGTCAAAGTACCGTCAGAAT +
Preference number: 4 (lower is better)
Translates to: SSEKGQLAAFSLRLISSLISHSI*SKYRQN
Trigger: ATTCTGACGGTACTTTGACCATATGGAATGTGAGAT...CAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGACTTGTCAACATCTGGGCTGCTCACCCTCTaGAGTATCCACATCATTTAT +
Preference number: 4 (lower is better)
Translates to: KFNTGMIHRIVLQDLSTSGLLTL*SIHIIY
Trigger: ATAAATGATGTGGATACTCCAGAGGGTGAGCAGCCC...AGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGACATCTTTGCGGAAGTaGGAGATTTGCAGCGATCCT +
Preference number: 4 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLTSLRK*EICSDP
Trigger: AGGATCGCTGCAAATCTCCCACTTCCGCAAAGATGT...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATCACCAGGAGATGATCTaGATGGCATATGGATCTTCA +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYHQEMI*MAYGSS
Trigger: TGAAGATCCATATGCCATTCAGATCATCTCCTGGTG...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR TCA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGTTCAGCATCATCTCATaGGCATGTTTGGAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLFSIIS*ACLEKE
Trigger: CTCCTTCTCCAAACATGCTCATGAGATGATGCTGAA...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp ACGTTATCTTCCCCAAATACATCAGTGATATCAACAAGGAAACTTCTTTTTCCTGTCTCGGTGATGTTCTaGTTGTATGCACAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: TLSSPNTSVISTRKLLFPVSVMF*LYAQLW
Trigger: CCAGAGCTGTGCATACAAGCAGAACATCACCGAGAC...AGGAAAAAGAAGTTTCCTTGTTGATATCACTGATGTATTTGGGGAAGATAACGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGACTTGTCAACATCTACTCTTTGTCAATGCTaGTTACACTTGAACTCCGCG +
Preference number: 4 (lower is better)
Translates to: KFNTGMIHRIVLQDLSTSTLCQC*LHLNSA
Trigger: CGCGGAGTTCAAGTGTAACCAGCATTGACAAAGAGT...AGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AAGTTTAATACAGGAATGATCCACAGAATAGTCCTCCAGGACTTGTCAACATCTAATGAAGAGCAGAGATaGTTTCCCGGGACTCTTTGT +
Preference number: 4 (lower is better)
Translates to: KFNTGMIHRIVLQDLSTSNEEQR*FPGTLC
Trigger: ACAAAGAGTCCCGGGAAACCATCTCTGCTCTTCATT...AGATGTTGACAAGTCCTGGAGGACTATTCTGTGGATCATTCCTGTATTAAACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCAATATAGTACCGCTTaGAGACACAATCACTGGCTG +
Preference number: 4 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLQYSTA*RHNHWL
Trigger: CAGCCAGTGATTGTGTCTCCAAGCGGTACTATATTG...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR GCA 90 bp TTCTCAGCAAAGTGCGTCCCTTTTACGTTATCTTCCCCAAATACATCAGTGATAACCGAGCCATCAGCATaGCCTGTAATAATTATTTCT +
Preference number: 4 (lower is better)
Translates to: FSAKCVPFTLSSPNTSVITEPSA*PVIIIS
Trigger: AGAAATAATTATTACAGGGCATGCTGATGGCTCGGT...TATCACTGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp ACAATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTCATTAATCAGGAACTaGAGTTGGATCACTGCTGCT +
Preference number: 4 (lower is better)
Translates to: TMQSRYKVTFVDLQLLVYSLIRN*SWITAA
Trigger: AGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGA...ATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp TTCTCAGCAAAGTGCGTCCCTTTTACGTTATCTTCCCCAAATACATCAGTGATAAACAACCACAGCATATaGTTCCTGAAAATCGTTTGG +
Preference number: 4 (lower is better)
Translates to: FSAKCVPFTLSSPNTSVINNHSI*FLKIVW
Trigger: CCAAACGATTTTCAGGAACCATATGCTGTGGTTGTT...TATCACTGATGTATTTGGGGAAGATAACGTAAAAGGGACGCACTTTGCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CCA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCATTGGCTACCATCTTaGAAAACTTTCTGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLHWLPS*KTFCFG
Trigger: CCCAAAGCAGAAAGTTTTCCAAGATGGTAGCCAATG...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS GCA 90 bp TGGATCTCCGGCTCCCGGTTCCCAGGCGGGTGCTGCTGCTGTTGCTaGTGTTGCGAGGCCGAGGACGAGCCTGCGGTCAGGCCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: WISGSRFPGGCCCCC*CCEAEDEPAVRPSS
Trigger: GCTGGACGGCCTGACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 90 bp TGGAGCGTCTCCTGGATCTCCGGCTCCCGGTTCCCAGGCGGGTGCTaGTGCTGTTGCTGCTGTTGCGAGGCCGAGGACGAGCCTGCGGTC +
Preference number: 5 (lower is better)
Translates to: WSVSWISGSRFPGGC*CCCCCCEAEDEPAV
Trigger: GACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAGACGCTCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 90 bp TTCGTCGAGGGCCAGCCTGGCTCGGGCAAGTTCACCCACCACTCCTaGCGCGGCTCCTTTCACACCTTCGATCCCACCAGGGCCCGGGAT +
Preference number: 5 (lower is better)
Translates to: FVEGQPGSGKFTHHS*RGSFHTFDPTRARD
Trigger: ATCCCGGGCCCTGGTGGGATCGAAGGTGTGAAAGGAGCCGCGTCAGGAGTGGTGGGTGAACTTGCCCGAGCCAGGCTGGCCCTCGACGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 90 bp GAGACTGAGGAGGAATGGGCTGAGGGTTGGAGCTGCCCACGGGGGTaGACAGAGGCGGGGGCTGCTCACCCTCTGGAGTATCCACATCAT +
Preference number: 5 (lower is better)
Translates to: ETEEEWAEGWSCPRG*TEAGAAHPLEYPHH
Trigger: ATGATGTGGATACTCCAGAGGGTGAGCAGCCCCCGCCTCTGTCCACCCCCGTGGGCAGCTCCAACCCTCAGCCCATTCCTCCTCAGTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 90 bp CGAACAGTCTTGCAGAGTTGGAAGTGTTCGGACTGGAGCGTCTCCTaGATCTCCGGCTCCCGGTTCCCAGGCGGGTGCTGCTGCTGTTGC +
Preference number: 5 (lower is better)
Translates to: RTVLQSWKCSDWSVS*ISGSRFPGGCCCCC
Trigger: GCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTCCGAACACTTCCAACTCTGCAAGACTGTTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 90 bp GGGAATCCATGGCGAACAGTCTTGCAGAGTTGGAAGTGTTCGGACTaGAGCGTCTCCTGGATCTCCGGCTCCCGGTTCCCAGGCGGGTGC +
Preference number: 5 (lower is better)
Translates to: GNPWRTVLQSWKCSD*SVSWISGSRFPGGC
Trigger: GCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTCCGAACACTTCCAACTCTGCAAGACTGTTCGCCATGGATTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCAGGGCCCGGGATGTGTaGTGCGAGGCTCCTGGAGGC +
Preference number: 5 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRRARDV*CEAPGG
Trigger: GCCTCCAGGAGCCTCGCACAACACATCCCGGGCCCT...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS TCA 90 bp AAGTGGGAGATTTGCAGCGATCCTCCGGGACGACAGTCCCTTCGGTaGTATCACACAGGCCCGCTCCTGAAGGCTGTCGGGATTTTCGGG +
Preference number: 5 (lower is better)
Translates to: KWEICSDPPGRQSLR*YHTGPLLKAVGIFG
Trigger: CCCGAAAATCCCGACAGCCTTCAGGAGCGGGCCTGTGTGATATCACCGAAGGGACTGTCGTCCCGGAGGATCGCTGCAAATCTCCCACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 90 bp GCCGTTACAGTTGCCGAAAACCACCAGTCCATAGGAAGAGTTGAGTaGCAGGCTGGTGATCTGCTGCGGGGGTTCTCCACCCACCCACAC +
Preference number: 5 (lower is better)
Translates to: AVTVAENHQSIGRVE*QAGDLLRGFSTHPH
Trigger: GTGTGGGTGGGTGGAGAACCCCCGCAGCAGATCACCAGCCTGGCACTCAACTCTTCCTATGGACTGGTGGTTTTCGGCAACTGTAACGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCGGGTGCTGCTGCTGTaGCTGCTGTTGCGAGGCCGA +
Preference number: 5 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRRVLLL*LLLRGR
Trigger: TCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCG...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACCGGGTGCTGCTGCTGTaGCTGCTGTTGCGAGGCCGA +
Preference number: 5 (lower is better)
Translates to: MATTWKLPEDERLSYAPHRVLLL*LLLRGR
Trigger: TCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCG...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS CCA 90 bp CACCTTCGATCCCACCAGGGCCCGGGATGTGTTGTGCGAGGCTCCTaGAGGCCTTTCCCGAGGACGACTCTCCAAATAGTTCTTCTCTAT +
Preference number: 5 (lower is better)
Translates to: HLRSHQGPGCVVRGS*RPFPRTTLQIVLLY
Trigger: ATAGAGAAGAACTATTTGGAGAGTCGTCCTCGGGAAAGGCCTCCAGGAGCCTCGCACAACACATCCCGGGCCCTGGTGGGATCGAAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGCTGCTGTTGCTGCTGTaGCGAGGCCGAGGACGAGCC +
Preference number: 5 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKLLLLL*RGRGRA
Trigger: GGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAG...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTCTGCTGTTGCTGCTGTaGCGAGGCCGAGGACGAGCC +
Preference number: 5 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMALLLLL*RGRGRA
Trigger: GGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAG...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS GCA 90 bp ATGGCCATTGGCACAGAAGCAGGCGAGGCAGACACTGTTACTCAGTaGGACAATGTCTCCGCGGAGCACGAAGGACGTCTCGGTGATGTT +
Preference number: 5 (lower is better)
Translates to: MAIGTEAGEADTVTQ*DNVSAEHEGRLGDV
Trigger: AACATCACCGAGACGTCCTTCGTGCTCCGCGGAGACATTGTCGCACTGAGTAACAGTGTCTGCCTCGCCTGCTTCTGTGCCAATGGCCAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGCCGGAAGTGGGAGATTaGCAGCGATCCTCCGGGACG +
Preference number: 5 (lower is better)
Translates to: YVMMRVEEDPARTRAVCVPEVGD*QRSSGT
Trigger: CGTCCCGGAGGATCGCTGCAAATCTCCCACTTCCGG...CACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp GTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTGTCATGATATGGCCATaGGCACAGAAGCAGGCGAGG +
Preference number: 5 (lower is better)
Translates to: VSVTPLSSPFVNAQPAHTVMIWP*AQKQAR
Trigger: CCTCGCCTGCTTCTGTGCCAATGGCCATATCATGAC...AGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS GCA 90 bp GCGACAATGTCTCCGCGGAGCACGAAGGACGTCTCGGTGATGTTCTaGTTGTATGCACAGCTCTGGGTTGGCAGTGACATGACCTTTGCT +
Preference number: 5 (lower is better)
Translates to: ATMSPRSTKDVSVMF*LYAQLWVGSDMTFA
Trigger: AGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTGCTCCGCGGAGACATTGTCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp GTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTGCGTCCCTAGGGCCCGGGATGTGTaGTGCGAGGCTCCTGGAGGC +
Preference number: 5 (lower is better)
Translates to: VKQCMIVLGKKFSAKCVPRARDV*CEAPGG
Trigger: GCCTCCAGGAGCCTCGCACAACACATCCCGGGCCCT...AGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS GCA 90 bp CACAAGGGCTCCCTCATTAATCAGGAACTGGAGTTGGATCACTGCTaGTCCGCTGTCGTGCTGGCAATAACATTCCACTCCTGGACGACC +
Preference number: 5 (lower is better)
Translates to: HKGSLINQELELDHC*SAVVLAITFHSWTT
Trigger: GGTCGTCCAGGAGTGGAATGTTATTGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGAGGGAGCCCTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 90 bp ACTCACAAGGGCTCCCTCATTAATCAGGAACTGGAGTTGGATCACTaGTGCTCCGCTGTCGTGCTGGCAATAACATTCCACTCCTGGACG +
Preference number: 5 (lower is better)
Translates to: THKGSLINQELELDH*CSAVVLAITFHSWT
Trigger: CGTCCAGGAGTGGAATGTTATTGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGAGGGAGCCCTTGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCGGAGGTAGTCAACCATaGCGATGCCGTTACAGTTGC +
Preference number: 5 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRGGSQP*RCRYSC
Trigger: GCAACTGTAACGGCATCGCAATGGTTGACTACCTCC...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGAGTCATGATATGGCCATaGGCACAGAAGCAGGCGAGG +
Preference number: 5 (lower is better)
Translates to: LTLPLCMATTWKLPEDERVMIWP*AQKQAR
Trigger: CCTCGCCTGCTTCTGTGCCAATGGCCATATCATGAC...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp GTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTGCGTCCCTGCGGAAGTGGGAGATTaGCAGCGATCCTCCGGGACG +
Preference number: 5 (lower is better)
Translates to: VKQCMIVLGKKFSAKCVPAEVGD*QRSSGT
Trigger: CGTCCCGGAGGATCGCTGCAAATCTCCCACTTCCGC...AGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGTCCGATAAGGATCATTaGAGCCGTAAAGTTCGATGG +
Preference number: 5 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPSDKDH*SRKVRW
Trigger: CCATCGAACTTTACGGCTCAAATGATCCTTATCGGA...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGTTTTCTTCAGCAACGTaGTGTTCTTTCCAGGGTTCG +
Preference number: 5 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPFSSAT*CSFQGS
Trigger: CGAACCCTGGAAAGAACACAACGTTGCTGAAGAAAA...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACACACTCTATGCTCCGGCAAGCTTAATTTCCTaGACATCTTTGCGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: PHSVLRSSMHSQHTLYAPASLIS*TSLRKW
Trigger: CCACTTCCGCAAAGATGTCAAGGAAATTAAGCTTGC...CGGAGCATAGAGTGTGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141722.8
CDS TCA 90 bp TCGGGATTTTCGGGGCGAGCGAGGTTCTCTCCGATAAGGATCATTTaGGCCGTAAAGTTCGATGGTGCTGAGGTTGAGCAGTACTGCTTT +
Preference number: 5 (lower is better)
Translates to: SGFSGRARFSPIRII*AVKFDGAEVEQYCF
Trigger: AAAGCAGTACTGCTCAACCTCAGCACCATCGAACTTTACGGCTCAAATGATCCTTATCGGAGAGAACCTCGCTCGCCCCGAAAATCCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 90 bp GGTGCTGAGGTTGAGCAGTACTGCTTTCTGGAGGTAGTCAACCATTaGGATGCCGTTACAGTTGCCGAAAACCACCAGTCCATAGGAAGA +
Preference number: 5 (lower is better)
Translates to: GAEVEQYCFLEVVNH*DAVTVAENHQSIGR
Trigger: TCTTCCTATGGACTGGTGGTTTTCGGCAACTGTAACGGCATCGCAATGGTTGACTACCTCCAGAAAGCAGTACTGCTCAACCTCAGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 90 bp ACATCCAGGAGAGGCCTCAAGCTTGGCAAACTGAAAGTCATGATATaGCCATTGGCACAGAAGCAGGCGAGGCAGACACTGTTACTCAGT +
Preference number: 5 (lower is better)
Translates to: TSRRGLKLGKLKVMI*PLAQKQARQTLLLS
Trigger: ACTGAGTAACAGTGTCTGCCTCGCCTGCTTCTGTGCCAATGGCCATATCATGACTTTCAGTTTGCCAAGCTTGAGGCCTCTCCTGGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ATTGCCTCTCCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGAACAGTCTTGCAGAGTaGGAAGTGTTCGGACTGGAG +
Preference number: 5 (lower is better)
Translates to: IASPHVGSNTDGRYNGTKNSLAE*EVFGLE
Trigger: CTCCAGTCCGAACACTTCCAACTCTGCAAGACTGTT...CTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGGAGAGGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACCCCTCGTCCATGGGATaGTCACTTATATGCACAACT +
Preference number: 5 (lower is better)
Translates to: MATTWKLPEDERLSYAPHPSSMG*SLICTT
Trigger: AGTTGTGCATATAAGTGACAATCCCATGGACGAGGG...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCCCCAATTACCACCATaGATGGGCCATTCCTTTTTG +
Preference number: 5 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTPQLPP*MGHSFL
Trigger: CAAAAAGGAATGGCCCATCAATGGTGGTAATTGGGG...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp GTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTGCTATTTCTGGGTAACTTaGAGCACCCAAGCCCCAATT +
Preference number: 5 (lower is better)
Translates to: VMMRVEEDPARTRAVCVCYFWVT*STQAPI
Trigger: AATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATA...GCACACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGAGGAGGTAGTCAACCATaGCGATGCCGTTACAGTTGC +
Preference number: 5 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRGGSQP*RCRYSC
Trigger: GCAACTGTAACGGCATCGCAATGGTTGACTACCTCC...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCGTTTCCCGGGACTCTTaGTCAATGCTGGTTACACTT +
Preference number: 5 (lower is better)
Translates to: SAWLLHGNSPKMSDSAMRVSRDS*SMLVTL
Trigger: AAGTGTAACCAGCATTGACAAAGAGTCCCGGGAAAC...GCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS TCA 90 bp CGTCTCGGTGATGTTCTGCTTGTATGCACAGCTCTGGGTTGGCAGTaGCATGACCTTTGCTTGCTTTTCAGAGCATATCACTGCGTACTG +
Preference number: 5 (lower is better)
Translates to: RLGDVLLVCTALGWQ*HDLCLLFRAYHCVL
Trigger: CAGTACGCAGTGATATGCTCTGAAAAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 90 bp AGTCGGCCTTCCGCGTCAAAGTCTCACAGAAATGAAGAGCAGAGATaGTTTCCCGGGACTCTTTGTCAATGCTGGTTACACTTGAACTCC +
Preference number: 5 (lower is better)
Translates to: SRPSASKSHRNEEQR*FPGTLCQCWLHLNS
Trigger: GGAGTTCAAGTGTAACCAGCATTGACAAAGAGTCCCGGGAAACCATCTCTGCTCTTCATTTCTGTGAGACTTTGACGCGGAAGGCCGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CCA 90 bp AGCACGAAGGACGTCTCGGTGATGTTCTGCTTGTATGCACAGCTCTaGGTTGGCAGTGACATGACCTTTGCTTGCTTTTCAGAGCATATC +
Preference number: 5 (lower is better)
Translates to: STKDVSVMFCLYAQL*VGSDMTFACFSEHI
Trigger: GATATGCTCTGAAAAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTTCAGCCTTCTTTGACTaGAGGTCCCATAAGACTACT +
Preference number: 5 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTSAFFD*RSHKTT
Trigger: AGTAGTCTTATGGGACCTCAAGTCAAAGAAGGCTGA...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGCTTTTTGCTGTAACCTaGACGCTTCTGTCTAGCTCC +
Preference number: 5 (lower is better)
Translates to: YVMMRVEEDPARTRAVCVLFAVT*TLLSSS
Trigger: GGAGCTAGACAGAAGCGTCAAGGTTACAGCAAAAAG...CACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTCTTCCACTCTGCATGGCTCTTTTTGCTGTAACCTaGACGCTTCTGTCTAGCTCC +
Preference number: 5 (lower is better)
Translates to: TDSPHHNAGSLTLPLCMALFAVT*TLLSSS
Trigger: GGAGCTAGACAGAAGCGTCAAGGTTACAGCAAAAAG...AGCCATGCAGAGTGGAAGAGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp GTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCAGCAAAGTGCGTCCCTCCATGGCGAACAGTCTaGCAGAGTTGGAAGTGTTCG +
Preference number: 5 (lower is better)
Translates to: VKQCMIVLGKKFSAKCVPPWRTV*QSWKCS
Trigger: CGAACACTTCCAACTCTGCAAGACTGTTCGCCATGG...AGGGACGCACTTTGCTGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGACCTTCAGGATAGGCTaGCATGGCTCTGGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: SSEKGQLAAFSLRLISSLTFRIG*HGSGFF
Trigger: GAAGAAGCCAGAGCCATGCAAGCCTATCCTGAAGGT...CAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCCCCAATTACCACCATaGATGGGCCATTCCTTTTTG +
Preference number: 5 (lower is better)
Translates to: SLTLPLCMATTWKLPEDEPQLPP*MGHSFL
Trigger: CAAAAAGGAATGGCCCATCAATGGTGGTAATTGGGG...CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGCGATATTTCTGGGTAACTTaGAGCACCCAAGCCCCAATT +
Preference number: 5 (lower is better)
Translates to: LTLPLCMATTWKLPEDERYFWVT*STQAPI
Trigger: AATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATA...TCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ATCTGTCAGCGTGACCCCACTCAGTTCTCCGTTCGTCAATGCACAGCCAGCACAATCTTTGCTAGATCATaGGCTACCATCTTGGAAAAC +
Preference number: 5 (lower is better)
Translates to: ICQRDPTQFSVRQCTASTIFARS*ATILEN
Trigger: GTTTTCCAAGATGGTAGCCAATGATCTAGCAAAGAT...TGTGCTGGCTGTGCATTGACGAACGGAGAACTGAGTGGGGTCACGCTGACAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp CACCATTCGGCAGAGTCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGAGTTTCCCGGGACTCTTaGTCAATGCTGGTTACACTT +
Preference number: 5 (lower is better)
Translates to: HHSAESSEKGQLAAFSLRVSRDS*SMLVTL
Trigger: AAGTGTAACCAGCATTGACAAAGAGTCCCGGGAAAC...TCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGACTCTGCCGAATGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp GTATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTTTTTCTTCAGCAACGTaGTGTTCTTTCCAGGGTTCG +
Preference number: 5 (lower is better)
Translates to: VCDDESRRGSRTHTSCVCFSSAT*CSFQGS
Trigger: CGAACCCTGGAAAGAACACAACGTTGCTGAAGAAAA...ACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS CCA 90 bp TGTGTTCTTTCCAGGGTTCGTATGCAGGAGACATTAAGCAGCCCGTaGCATCCAGAAATGCCATCCTCAAGATTGCACCTTTTAACCTCA +
Preference number: 5 (lower is better)
Translates to: CVLSRVRMQETLSSP*HPEMPSSRLHLLTS
Trigger: TGAGGTTAAAAGGTGCAATCTTGAGGATGGCATTTCTGGATGCCACGGGCTGCTTAATGTCTCCTGCATACGAACCCTGGAAAGAACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CAGACCCAGACTGGGAAGTTATTAAAATCATTCACTTTCCCAGGAAGCTACGCTCCATGGCGAACAGTCTaGCAGAGTTGGAAGTGTTCG +
Preference number: 5 (lower is better)
Translates to: QTQTGKLLKSFTFPGSYAPWRTV*QSWKCS
Trigger: CGAACACTTCCAACTCTGCAAGACTGTTCGCCATGG...AGCGTAGCTTCCTGGGAAAGTGAATGATTTTAATAACTTCCCAGTCTGGGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp TATGTGATGATGAGAGTAGAAGAGGATCCCGCACGCACACGAGCTGTGTGTGTGTATAGGGTATCCATTTaGTGCAAGGTCTATCAGCAC +
Preference number: 5 (lower is better)
Translates to: YVMMRVEEDPARTRAVCVYRVSI*CKVYQH
Trigger: GTGCTGATAGACCTTGCACAAAATGGATACCCTATA...CACACACACAGCTCGTGTGCGTGCGGGATCCTCTTCTACTCTCATCATCACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CAGACCCAGACTGGGAAGTTATTAAAATCATTCACTTTCCCAGGAAGCTACGCTTCGATGGTGCTGAGGTaGAGCAGTACTGCTTTCTGG +
Preference number: 5 (lower is better)
Translates to: QTQTGKLLKSFTFPGSYASMVLR*SSTAFW
Trigger: CCAGAAAGCAGTACTGCTCAACCTCAGCACCATCGA...AGCGTAGCTTCCTGGGAAAGTGAATGATTTTAATAACTTCCCAGTCTGGGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp TCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGTCCGATAAGGATCATTaGAGCCGTAAAGTTCGATGG +
Preference number: 5 (lower is better)
Translates to: SLTLPLCMATTWKLPEDESDKDH*SRKVRW
Trigger: CCATCGAACTTTACGGCTCAAATGATCCTTATCGGA...CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp ATGGCTACTACATGGAAACTCCCCGAAGATGAGCGACTCAGCTATGCGCCACACATTTCCTTGACATCTTaGCTAGATCATTGGCTACCA +
Preference number: 5 (lower is better)
Translates to: MATTWKLPEDERLSYAPHISLTS*LDHWLP
Trigger: TGGTAGCCAATGATCTAGCAAAGATGTCAAGGAAAT...GTGTGGCGCATAGCTGAGTCGCTCATCTTCGGGGAGTTTCCATGTAGTAGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp ACAGGACACAGGACAGGGACGGATTCTCCTCACCACAATGCAGGTTCTCTCACTATGCCATCCTCAAGATaGCACCTTTTAACCTCAATA +
Preference number: 5 (lower is better)
Translates to: TGHRTGTDSPHHNAGSLTMPSSR*HLLTSI
Trigger: TATTGAGGTTAAAAGGTGCAATCTTGAGGATGGCAT...AGTGAGAGAACCTGCATTGTGGTGAGGAGAATCCGTCCCTGTCCTGTGTCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS TCA 90 bp GGGACTCTTTGTCAATGCTGGTTACACTTGAACTCCGCGATCTGCTaGAGGAATTGTCTTTTACATCGGAAGTGGGAGATTTGCAGCGAT +
Preference number: 5 (lower is better)
Translates to: GTLCQCWLHLNSAIC*RNCLLHRKWEICSD
Trigger: ATCGCTGCAAATCTCCCACTTCCGATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTTCAAGTGTAACCAGCATTGACAAAGAGTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125200.8
CDS TCA 90 bp AGCAGAGATGGTTTCCCGGGACTCTTTGTCAATGCTGGTTACACTTaGACTCCGCGATCTGCTGAAGGAATTGTCTTTTACATCGGAAGT +
Preference number: 5 (lower is better)
Translates to: SRDGFPGLFVNAGYT*TPRSAEGIVFYIGS
Trigger: ACTTCCGATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTTCAAGTGTAACCAGCATTGACAAAGAGTCCCGGGAAACCATCTCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125200.8
CDS GCA 90 bp TGCTTGTATGCACAGCTCTGGGTTGGCAGTGACATGACCTTTGCTTaGTTTTCAGAGCATATCACTGCGTACTGGTTCTCACTAATTTCC +
Preference number: 5 (lower is better)
Translates to: CLYAQLWVGSDMTFA*FSEHITAYWFSLIS
Trigger: GGAAATTAGTGAGAACCAGTACGCAGTGATATGCTCTGAAAAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CCA 90 bp CCAGAATTTCACCGAGCCATCAGCATGCCCTGTAATAATTATTTCTaGGTAACTTTGAGCACCCAAGCCCCAATTACCACCATTGATGGG +
Preference number: 5 (lower is better)
Translates to: PEFHRAISMPCNNYF*VTLSTQAPITTIDG
Trigger: CCCATCAATGGTGGTAATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGATGGCTCGGTGAAATTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp AGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCCCCAAATCAGGAACTGGAGTaGGATCACTGCTGCTCCGCT +
Preference number: 5 (lower is better)
Translates to: RYKVTFVDLQLLVYCLSPNQELE*DHCCSA
Trigger: AGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATT...TGGGGAGAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCAATCAGGAACTGGAGTaGGATCACTGCTGCTCCGCT +
Preference number: 5 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLNQELE*DHCCSA
Trigger: AGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATT...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCACCTTCAGGATAGGCTaGCATGGCTCTGGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLTFRIG*HGSGFF
Trigger: GAAGAAGCCAGAGCCATGCAAGCCTATCCTGAAGGT...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGCCTCTCGATGGTGCTGAGGTaGAGCAGTACTGCTTTCTGG +
Preference number: 5 (lower is better)
Translates to: QSRYKVTFVDLQLLVYCLSMVLR*SSTAFW
Trigger: CCAGAAAGCAGTACTGCTCAACCTCAGCACCATCGA...GAGGCAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTCTCACTCTTCCACTCTGCATGGCTACTACATGGAAACTCCCCGAAGATGAGTCATTGGCTACCATCTaGGAAAACTTTCTGCTTTGG +
Preference number: 5 (lower is better)
Translates to: SLTLPLCMATTWKLPEDESLATI*ENFLLW
Trigger: CCAAAGCAGAAAGTTTTCCAAGATGGTAGCCAATGA...CTCATCTTCGGGGAGTTTCCATGTAGTAGCCATGCAGAGTGGAAGAGTGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp CCCCACGTCGGATCAAACACTGATGGCAGATACAACGGCACAAAGTCTTTTGGCATGCCATCCTCAAGATaGCACCTTTTAACCTCAATA +
Preference number: 5 (lower is better)
Translates to: PHVGSNTDGRYNGTKSFGMPSSR*HLLTSI
Trigger: TATTGAGGTTAAAAGGTGCAATCTTGAGGATGGCAT...GCCAAAAGACTTTGTGCCGTTGTATCTGCCATCAGTGTTTGATCCGACGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp CAGACCCAGACTGGGAAGTTATTAAAATCATTCACTTTCCCAGGAAGCTACGCTCCCTCGTCCATGGGATaGTCACTTATATGCACAACT +
Preference number: 5 (lower is better)
Translates to: QTQTGKLLKSFTFPGSYAPSSMG*SLICTT
Trigger: AGTTGTGCATATAAGTGACAATCCCATGGACGAGGG...AGCGTAGCTTCCTGGGAAAGTGAATGATTTTAATAACTTCCCAGTCTGGGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS-3UTR CAA 90 bp AGCCGTGTGACTGAGGTAAAACAGTGCATGATTGTGCTGGGAAAGAAGTTCTCATCAGCCTTCTTTGACTaGAGGTCCCATAAGACTACT +
Preference number: 5 (lower is better)
Translates to: SRVTEVKQCMIVLGKKFSSAFFD*RSHKTT
Trigger: AGTAGTCTTATGGGACCTCAAGTCAAAGAAGGCTGA...TGAGAACTTCTTTCCCAGCACAATCATGCACTGTTTTACCTCAGTCACACGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp TCTAGCGAGAAGGGACAGCTTGCTGCTTTTTCACTAAGACTGATAAGCAGTCTGTATAGGGTATCCATTTaGTGCAAGGTCTATCAGCAC +
Preference number: 5 (lower is better)
Translates to: SSEKGQLAAFSLRLISSLYRVSI*CKVYQH
Trigger: GTGCTGATAGACCTTGCACAAAATGGATACCCTATA...CAGACTGCTTATCAGTCTTAGTGAAAAAGCAGCAAGCTGTCCCTTCTCGCTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038213.14
ENSMUST00000141722.8
CDS-3UTR CAA 90 bp AATGCAGTCCAGATACAAAGTGACCTTTGTGGACTTACAACTTCTGGTTTATTGGGAAAACTTTCTGCTTaGGGTCTTCACCTTTTCTAT +
Preference number: 5 (lower is better)
Translates to: NAVQIQSDLCGLTTSGLLGKLSA*GLHLFY
Trigger: ATAGAAAAGGTGAAGACCCAAAGCAGAAAGTTTTCC...CAATAAACCAGAAGTTGTAAGTCCACAAAGGTCACTTTGTATCTGGACTGCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14
CDS GCA 72 bp GGCTCCCGGTTCCCAGGCGGGTGCTGCTGCTGTTGCTaGTGTTGCGAGGCCGAGGACGAGCCTGCGGTCAGG +
Preference number: 6 (lower is better)
Translates to: GSRFPGGCCCCC*CCEAEDEPAVR
Trigger: CCTGACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp TCCGGCTCCCGGTTCCCAGGCGGGTGCTGCTGCTGTTaGTGCTGTTGCGAGGCCGAGGACGAGCCTGCGGTC +
Preference number: 6 (lower is better)
Translates to: SGSRFPGGCCCC*CCCEAEDEPAV
Trigger: GACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp CTCCGGCTCCCGGTTCCCAGGCGGGTGCTGCTGCTGTaGCTGCTGTTGCGAGGCCGAGGACGAGCCTGCGGT +
Preference number: 6 (lower is better)
Translates to: LRLPVPRRVLLL*LLLRGRGRACG
Trigger: ACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 90 bp CTCCTGGATCTCCGGCTCCCGGTTCCCAGGCGGGTGCTGCTGCTGTaGCTGCTGTTGCGAGGCCGAGGACGAGCCTGCGGTCAGGCCGTC +
Preference number: 6 (lower is better)
Translates to: LLDLRLPVPRRVLLL*LLLRGRGRACGQAV
Trigger: GACGGCCTGACCGCAGGCTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp TCCTGGATCTCCGGCTCCCGGTTCCCAGGCGGGTGCTaGTGCTGTTGCTGCTGTTGCGAGGCCGAGGACGAG +
Preference number: 6 (lower is better)
Translates to: SWISGSRFPGGC*CCCCCCEAEDE
Trigger: CTCGTCCTCGGCCTCGCAACAGCAGCAACAGCAGCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp GATGAGACTGAGGAGGAATGGGCTGAGGGTTGGAGCTaGCCACGGGGGTGGACAGAGGCGGGGGCTGCTCAC +
Preference number: 6 (lower is better)
Translates to: DETEEEWAEGWS*PRGWTEAGAAH
Trigger: GTGAGCAGCCCCCGCCTCTGTCCACCCCCGTGGGCAGCTCCAACCCTCAGCCCATTCCTCCTCAGTCTCATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp GAGGAATGGGCTGAGGGTTGGAGCTGCCCACGGGGGTaGACAGAGGCGGGGGCTGCTCACCCTCTGGAGTAT +
Preference number: 6 (lower is better)
Translates to: EEWAEGWSCPRG*TEAGAAHPLEY
Trigger: ATACTCCAGAGGGTGAGCAGCCCCCGCCTCTGTCCACCCCCGTGGGCAGCTCCAACCCTCAGCCCATTCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp GGCCAGCCTGGCTCGGGCAAGTTCACCCACCACTCCTaGCGCGGCTCCTTTCACACCTTCGATCCCACCAGG +
Preference number: 6 (lower is better)
Translates to: GQPGSGKFTHHS*RGSFHTFDPTR
Trigger: CCTGGTGGGATCGAAGGTGTGAAAGGAGCCGCGTCAGGAGTGGTGGGTGAACTTGCCCGAGCCAGGCTGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp TTGCAGAGTTGGAAGTGTTCGGACTGGAGCGTCTCCTaGATCTCCGGCTCCCGGTTCCCAGGCGGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: LQSWKCSDWSVS*ISGSRFPGGCC
Trigger: GCAGCACCCGCCTGGGAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTCCGAACACTTCCAACTCTGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp GACAGTCCCTTCGGTGATATCACACAGGCCCGCTCCTaGAGGCTGTCGGGATTTTCGGGGCGAGCGAGGTTC +
Preference number: 6 (lower is better)
Translates to: DSPFGDITQARS*RLSGFSGRARF
Trigger: GAACCTCGCTCGCCCCGAAAATCCCGACAGCCTTCAGGAGCGGGCCTGTGTGATATCACCGAAGGGACTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp ATTTGCAGCGATCCTCCGGGACGACAGTCCCTTCGGTaGTATCACACAGGCCCGCTCCTGAAGGCTGTCGGG +
Preference number: 6 (lower is better)
Translates to: ICSDPPGRQSLR*YHTGPLLKAVG
Trigger: CCCGACAGCCTTCAGGAGCGGGCCTGTGTGATATCACCGAAGGGACTGTCGTCCCGGAGGATCGCTGCAAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp GCCGCACATGCAAGGAGTCCCAAGCAGCATACCTCCTaGAGGCTGTCGGGATTTTCGGGGCGAGCGAGGTTC +
Preference number: 6 (lower is better)
Translates to: AAHARSPKQHTS*RLSGFSGRARF
Trigger: GAACCTCGCTCGCCCCGAAAATCCCGACAGCCTTCAGGAGGTATGCTGCTTGGGACTCCTTGCATGTGCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136324.2
CDS GCA 72 bp GGCACAGAAGCAGGCGAGGCAGACACTGTTACTCAGTaGGACAATGTCTCCGCGGAGCACGAAGGACGTCTC +
Preference number: 6 (lower is better)
Translates to: GTEAGEADTVTQ*DNVSAEHEGRL
Trigger: GAGACGTCCTTCGTGCTCCGCGGAGACATTGTCGCACTGAGTAACAGTGTCTGCCTCGCCTGCTTCTGTGCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp TGGCGAACAGTCTTGCAGAGTTGGAAGTGTTCGGACTaGAGCGTCTCCTGGATCTCCGGCTCCCGGTTCCCA +
Preference number: 6 (lower is better)
Translates to: WRTVLQSWKCSD*SVSWISGSRFP
Trigger: TGGGAACCGGGAGCCGGAGATCCAGGAGACGCTCCAGTCCGAACACTTCCAACTCTGCAAGACTGTTCGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp GTTGCCGAAAACCACCAGTCCATAGGAAGAGTTGAGTaGCAGGCTGGTGATCTGCTGCGGGGGTTCTCCACC +
Preference number: 6 (lower is better)
Translates to: VAENHQSIGRVE*QAGDLLRGFST
Trigger: GGTGGAGAACCCCCGCAGCAGATCACCAGCCTGGCACTCAACTCTTCCTATGGACTGGTGGTTTTCGGCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp CCGCGGAGCACGAAGGACGTCTCGGTGATGTTCTGCTaGTATGCACAGCTCTGGGTTGGCAGTGACATGACC +
Preference number: 6 (lower is better)
Translates to: PRSTKDVSVMFC*YAQLWVGSDMT
Trigger: GGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTGCTCCGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp CGACAATGTCTCCGCGGAGCACGAAGGACGTCTCGGTaGTGTTCTGCTTGTATGCACAGCTCTGGGTTGGCA +
Preference number: 6 (lower is better)
Translates to: RQCLRGARRTSR*CSACMHSSGLA
Trigger: TGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTGCTCCGCGGAGACATTGTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp TCTCCGCGGAGCACGAAGGACGTCTCGGTGATGTTCTaGTTGTATGCACAGCTCTGGGTTGGCAGTGACATG +
Preference number: 6 (lower is better)
Translates to: SPRSTKDVSVMF*LYAQLWVGSDM
Trigger: CATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTGCTCCGCGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 90 bp ACAATGTCTCCGCGGAGCACGAAGGACGTCTCGGTGATGTTCTGCTaGTATGCACAGCTCTGGGTTGGCAGTGACATGACCTTTGCTTGC +
Preference number: 6 (lower is better)
Translates to: TMSPRSTKDVSVMFC*YAQLWVGSDMTFAC
Trigger: GCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTCCTTCGTGCTCCGCGGAGACATTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp TCGGGGCGAGCGAGGTTCTCTCCGATAAGGATCATTTaGGCCGTAAAGTTCGATGGTGCTGAGGTTGAGCAG +
Preference number: 6 (lower is better)
Translates to: SGRARFSPIRII*AVKFDGAEVEQ
Trigger: CTGCTCAACCTCAGCACCATCGAACTTTACGGCTCAAATGATCCTTATCGGAGAGAACCTCGCTCGCCCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp GAGCATATCACTGCGTACTGGTTCTCACTAATTTCCTaGGAAGAGGAGGGGGACACTGAGACAGGTCGCCGC +
Preference number: 6 (lower is better)
Translates to: EHITAYWFSLIS*EEEGDTETGRR
Trigger: GCGGCGACCTGTCTCAGTGTCCCCCTCCTCTTCTCAGGAAATTAGTGAGAACCAGTACGCAGTGATATGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS GCA 72 bp GGCTCCCTCATTAATCAGGAACTGGAGTTGGATCACTaGTGCTCCGCTGTCGTGCTGGCAATAACATTCCAC +
Preference number: 6 (lower is better)
Translates to: GSLINQELELDH*CSAVVLAITFH
Trigger: GTGGAATGTTATTGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGAGGGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp AGAGGCCTCAAGCTTGGCAAACTGAAAGTCATGATATaGCCATTGGCACAGAAGCAGGCGAGGCAGACACTG +
Preference number: 6 (lower is better)
Translates to: RGLKLGKLKVMI*PLAQKQARQTL
Trigger: CAGTGTCTGCCTCGCCTGCTTCTGTGCCAATGGCCATATCATGACTTTCAGTTTGCCAAGCTTGAGGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp ACTCACAAGGGCTCCCTCATTAATCAGGAACTGGAGTaGGATCACTGCTGCTCCGCTGTCGTGCTGGCAATA +
Preference number: 6 (lower is better)
Translates to: THKGSLINQELE*DHCCSAVVLAI
Trigger: TATTGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGAGGGAGCCCTTGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp CTGAAGGAATTGTCTTTTACATCGGAAGTGGGAGATTaGCAGCGATCCTCCGGGACGACAGTCCCTTCGGTG +
Preference number: 6 (lower is better)
Translates to: LKELSFTSEVGD*QRSSGTTVPSV
Trigger: CACCGAAGGGACTGTCGTCCCGGAGGATCGCTGCAAATCTCCCACTTCCGATGTAAAAGACAATTCCTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125200.8
CDS CAA 90 bp CGCGATCTGCTGAAGGAATTGTCTTTTACATCGGAAGTGGGAGATTaGCAGCGATCCTCCGGGACGACAGTCCCTTCGGTGATATCACAC +
Preference number: 6 (lower is better)
Translates to: RDLLKELSFTSEVGD*QRSSGTTVPSVISH
Trigger: GTGTGATATCACCGAAGGGACTGTCGTCCCGGAGGATCGCTGCAAATCTCCCACTTCCGATGTAAAAGACAATTCCTTCAGCAGATCGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125200.8
CDS GCA 72 bp TCCCTCATTAATCAGGAACTGGAGTTGGATCACTGCTaGTCCGCTGTCGTGCTGGCAATAACATTCCACTCC +
Preference number: 6 (lower is better)
Translates to: SLINQELELDHC*SAVVLAITFHS
Trigger: GGAGTGGAATGTTATTGCCAGCACGACAGCGGAGCAGCAGTGATCCAACTCCAGTTCCTGATTAATGAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp GCAGTACTGCTTTCTGGAGGTAGTCAACCATTGCGATaGCGTTACAGTTGCCGAAAACCACCAGTCCATAGG +
Preference number: 6 (lower is better)
Translates to: AVLLSGGSQPLR*RYSCRKPPVHR
Trigger: CCTATGGACTGGTGGTTTTCGGCAACTGTAACGGCATCGCAATGGTTGACTACCTCCAGAAAGCAGTACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp GCCGTAAAGTTCGATGGTGCTGAGGTTGAGCAGTACTaGTTTCTGGAGGTAGTCAACCATTGCGATGCCGTT +
Preference number: 6 (lower is better)
Translates to: AVKFDGAEVEQY*FLEVVNHCDAV
Trigger: AACGGCATCGCAATGGTTGACTACCTCCAGAAAGCAGTACTGCTCAACCTCAGCACCATCGAACTTTACGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp TCCAGGGTTCGTATGCAGGAGACATTAAGCAGCCCGTaGCATCCAGAAATGCCATCCTCAAGATTGCACCTT +
Preference number: 6 (lower is better)
Translates to: SRVRMQETLSSP*HPEMPSSRLHL
Trigger: AAGGTGCAATCTTGAGGATGGCATTTCTGGATGCCACGGGCTGCTTAATGTCTCCTGCATACGAACCCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CAA 90 bp CTCTGGATTTCTGTAGGTGAAACAAGGTATAAGGCTTGTCCGTTGTaGGCGAAGCAGAATGTCCTGGCTATCCGCATGTTGGTAAGGGGC +
Preference number: 6 (lower is better)
Translates to: LWISVGETRYKACPL*AKQNVLAIRMLVRG
Trigger: GCCCCTTACCAACATGCGGATAGCCAGGACATTCTGCTTCGCCAACAACGGACAAGCCTTATACCTTGTTTCACCTACAGAAATCCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS GCA 72 bp GCACAGCTCTGGGTTGGCAGTGACATGACCTTTGCTTaGTTTTCAGAGCATATCACTGCGTACTGGTTCTCA +
Preference number: 6 (lower is better)
Translates to: AQLWVGSDMTFA*FSEHITAYWFS
Trigger: TGAGAACCAGTACGCAGTGATATGCTCTGAAAAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CCA 72 bp GACGTCTCGGTGATGTTCTGCTTGTATGCACAGCTCTaGGTTGGCAGTGACATGACCTTTGCTTGCTTTTCA +
Preference number: 6 (lower is better)
Translates to: DVSVMFCLYAQL*VGSDMTFACFS
Trigger: TGAAAAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGAACATCACCGAGACGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp GGTAACTTTGAGCACCCAAGCCCCAATTACCACCATTaGTGGGCCATTCCTTTTTGCTGTAACCTTGACGCT +
Preference number: 6 (lower is better)
Translates to: GNFEHPSPNYHH*WAIPFCCNLDA
Trigger: AGCGTCAAGGTTACAGCAAAAAGGAATGGCCCATCAATGGTGGTAATTGGGGCTTGGGTGCTCAAAGTTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp TCTGCTTGTATGCACAGCTCTGGGTTGGCAGTGACATaGCCTTTGCTTGCTTTTCAGAGCATATCACTGCGT +
Preference number: 6 (lower is better)
Translates to: SACMHSSGLAVT*PLLAFQSISLR
Trigger: ACGCAGTGATATGCTCTGAAAAGCAAGCAAAGGTCATGTCACTGCCAACCCAGAGCTGTGCATACAAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CCA 72 bp CAGATTCGAAGCCAATCAAAAGCTTCCCCTCGTCCATaGGATTGTCACTTATATGCACAACTGGTCCTGGGT +
Preference number: 6 (lower is better)
Translates to: QIRSQSKASPRP*DCHLYAQLVLG
Trigger: ACCCAGGACCAGTTGTGCATATAAGTGACAATCCCATGGACGAGGGGAAGCTTTTGATTGGCTTCGAATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp CACCGAGCCATCAGCATGCCCTGTAATAATTATTTCTaGGTAACTTTGAGCACCCAAGCCCCAATTACCACC +
Preference number: 6 (lower is better)
Translates to: HRAISMPCNNYF*VTLSTQAPITT
Trigger: GGTGGTAATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGATGGCTCGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CCA 72 bp TCCGCGTCAAAGTCTCACAGAAATGAAGAGCAGAGATaGTTTCCCGGGACTCTTTGTCAATGCTGGTTACAC +
Preference number: 6 (lower is better)
Translates to: SASKSHRNEEQR*FPGTLCQCWLH
Trigger: GTGTAACCAGCATTGACAAAGAGTCCCGGGAAACCATCTCTGCTCTTCATTTCTGTGAGACTTTGACGCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CAA 72 bp TCTGTAGGTGAAACAAGGTATAAGGCTTGTCCGTTGTaGGCGAAGCAGAATGTCCTGGCTATCCGCATGTTG +
Preference number: 6 (lower is better)
Translates to: SVGETRYKACPL*AKQNVLAIRML
Trigger: CAACATGCGGATAGCCAGGACATTCTGCTTCGCCAACAACGGACAAGCCTTATACCTTGTTTCACCTACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 90 bp CACCGAGCCATCAGCATGCCCTGTAATAATTATTTCTGGGTAACTTaGAGCACCCAAGCCCCAATTACCACCATTGATGGGCCATTCCTT +
Preference number: 6 (lower is better)
Translates to: HRAISMPCNNYFWVT*STQAPITTIDGPFL
Trigger: AAGGAATGGCCCATCAATGGTGGTAATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGATGGCTCGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 90 bp AGTCTCTGGATTTCTGTAGGTGAAACAAGGTATAAGGCTTGTCCGTaGTTGGCGAAGCAGAATGTCCTGGCTATCCGCATGTTGGTAAGG +
Preference number: 6 (lower is better)
Translates to: SLWISVGETRYKACP*LAKQNVLAIRMLVR
Trigger: CCTTACCAACATGCGGATAGCCAGGACATTCTGCTTCGCCAACAACGGACAAGCCTTATACCTTGTTTCACCTACAGAAATCCAGAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp GGTTTCCCGGGACTCTTTGTCAATGCTGGTTACACTTaGACTCCGCGATCTGCTGAAGGAATTGTCTTTTAC +
Preference number: 6 (lower is better)
Translates to: GFPGLFVNAGYT*TPRSAEGIVFY
Trigger: GTAAAAGACAATTCCTTCAGCAGATCGCGGAGTTCAAGTGTAACCAGCATTGACAAAGAGTCCCGGGAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS GCA 72 bp AGTCAACGATTGAATAGTCCATTTCCAGCACTGCTGTaGTTTTCCCGTGCATCACTGTTAAGCAGGGTCTTC +
Preference number: 6 (lower is better)
Translates to: SQRLNSPFPALL*FSRASLLSRVF
Trigger: GAAGACCCTGCTTAACAGTGATGCACGGGAAAAGCACAGCAGTGCTGGAAATGGACTATTCAATCGTTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp ACCACCATTGATGGGCCATTCCTTTTTGCTGTAACCTaGACGCTTCTGTCTAGCTCCAACAGAGTAAAGTGC +
Preference number: 6 (lower is better)
Translates to: TTIDGPFLFAVT*TLLSSSNRVKC
Trigger: GCACTTTACTCTGTTGGAGCTAGACAGAAGCGTCAAGGTTACAGCAAAAAGGAATGGCCCATCAATGGTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp ATTTCTGTAGGTGAAACAAGGTATAAGGCTTGTCCGTaGTTGGCGAAGCAGAATGTCCTGGCTATCCGCATG +
Preference number: 6 (lower is better)
Translates to: ISVGETRYKACP*LAKQNVLAIRM
Trigger: CATGCGGATAGCCAGGACATTCTGCTTCGCCAACAACGGACAAGCCTTATACCTTGTTTCACCTACAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp CTGGTTACACTTGAACTCCGCGATCTGCTGAAGGAATaGTCTTTTACATCGGAAGTGGGAGATTTGCAGCGA +
Preference number: 6 (lower is better)
Translates to: LVTLELRDLLKE*SFTSEVGDLQR
Trigger: TCGCTGCAAATCTCCCACTTCCGATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTTCAAGTGTAACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125200.8
CDS TCA 72 bp CGTCGTATGTGTATCTGTAGTCAGCCTTCTTTGACTTaGGGTCCCATAAGACTACTGTTCCAGATTCGAAGC +
Preference number: 6 (lower is better)
Translates to: RRMCICSQPSLT*GPIRLLFQIRS
Trigger: GCTTCGAATCTGGAACAGTAGTCTTATGGGACCTCAAGTCAAAGAAGGCTGACTACAGATACACATACGACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp TCCTTTTCCAGGAGAACAACCACAGCATATGGTTCCTaGAAATCGTTTGGATATGGCGTTTCACAGAGTGTG +
Preference number: 6 (lower is better)
Translates to: SFSRRTTTAYGS*KSFGYGVSQSV
Trigger: CACACTCTGTGAAACGCCATATCCAAACGATTTTCAGGAACCATATGCTGTGGTTGTTCTCCTGGAAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS TCA 72 bp TGTCAATGCTGGTTACACTTGAACTCCGCGATCTGCTaGAGGAATTGTCTTTTACATCGGAAGTGGGAGATT +
Preference number: 6 (lower is better)
Translates to: CQCWLHLNSAIC*RNCLLHRKWEI
Trigger: AATCTCCCACTTCCGATGTAAAAGACAATTCCTTCAGCAGATCGCGGAGTTCAAGTGTAACCAGCATTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125200.8
CDS CAA 72 bp ATCAGCATGCCCTGTAATAATTATTTCTGGGTAACTTaGAGCACCCAAGCCCCAATTACCACCATTGATGGG +
Preference number: 6 (lower is better)
Translates to: ISMPCNNYFWVT*STQAPITTIDG
Trigger: CCCATCAATGGTGGTAATTGGGGCTTGGGTGCTCAAAGTTACCCAGAAATAATTATTACAGGGCATGCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp AATCAGGCTTTAGGTCAGTTGGCAAGCTTAATTTCCTaGACATCTTTGCGGAAGTGGGAGATTTGCAGCGAT +
Preference number: 6 (lower is better)
Translates to: NQALGQLASLIS*TSLRKWEICSD
Trigger: ATCGCTGCAAATCTCCCACTTCCGCAAAGATGTCAAGGAAATTAAGCTTGCCAACTGACCTAAAGCCTGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS TCA 72 bp CAGTTCGATGGCTTTATTCCACATAATGACATAGCCTaGGAGTGTGAAGGACTCCACATTAACAATGTGTAT +
Preference number: 6 (lower is better)
Translates to: QFDGFIPHNDIA*ECEGLHINNVY
Trigger: ATACACATTGTTAATGTGGAGTCCTTCACACTCTCAGGCTATGTCATTATGTGGAATAAAGCCATCGAACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000141722.8
CDS CAA 72 bp TTCAATTTCTCCTTTTCGTCTTTTTCTTCAGCAACGTaGTGTTCTTTCCAGGGTTCGTATGCAGGAGACATT +
Preference number: 6 (lower is better)
Translates to: FNFSFSSFSSAT*CSFQGSYAGDI
Trigger: AATGTCTCCTGCATACGAACCCTGGAAAGAACACAACGTTGCTGAAGAAAAAGACGAAAAGGAGAAATTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000038213.14
ENSMUST00000125200.8
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CAA 72 bp AATTGTCTTTTACATCTAAATCAGGCTTTAGGTCAGTaGGCAAGCTTAATTTCCTTGACATCTTTGCGGAAG +
Preference number: 6 (lower is better)
Translates to: NCLLHLNQALGQ*ASLISLTSLRK
Trigger: CTTCCGCAAAGATGTCAAGGAAATTAAGCTTGCCAACTGACCTAAAGCCTGATTTAGATGTAAAAGACAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136324.2
ENSMUST00000141722.8
CDS CAA 72 bp AATTGTCTTTTACATCTAAATCAGGCTTTAGGTCAGTaGGCAAGCTTAATTTCCTTGACATCTTTGCTAGAT +
Preference number: 6 (lower is better)
Translates to: NCLLHLNQALGQ*ASLISLTSLLD
Trigger: ATCTAGCAAAGATGTCAAGGAAATTAAGCTTGCCAACTGACCTAAAGCCTGATTTAGATGTAAAAGACAATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038213.14