Pregenerated sensors for STX19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047854Ensembl transcript IDs: ENSMUST00000055557.6
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATATGTGGTTAACTCATGAAATGCAGACAACCAAGTCAAGACTCTaGAATGTGGACAGCGTATCCCTAAATGCTGAGAACGTTTCTAAA | + |
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Preference number: 1 (lower is better) Translates to: HMWLTHEMQTTKSRL*NVDSVSLNAENVSK Trigger: TTTAGAAACGTTCTCAGCATTTAGGGATACGCTGTCCACATTTCAGAGTCTTGACTTGGTTGTCTGCATTTCATGAGTTAACCACATATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | GGGAGGGTGGGCAGTGGGAAAGACCACCTGAGAGTAGTTAAGCAGCCATTAGAGACCAAGTCAAGACTCTaGAATGTGGACAGCGTATCC | + |
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Preference number: 2 (lower is better) Translates to: GRVGSGKDHLRVVKQPLETKSRL*NVDSVS Trigger: GGATACGCTGTCCACATTTCAGAGTCTTGACTTGGT...CTCTAATGGCTGCTTAACTACTCTCAGGTGGTCTTTCCCACTGCCCACCCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACTTAGGTCTTACGCTTaGCTGTCACCAGTCACCAGT | + |
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Preference number: 2 (lower is better) Translates to: VKSTDCSSRGPEFKSQQPLRSYA*LSPVTS Trigger: ACTGGTGACTGGTGACAGTCAAGCGTAAGACCTAAG...TGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | AACTGCATGTGTGGAAGTGTCCGTGTGGAGCCCATCAATATGTATAGCATATTAAACCAGATTTATGGCTaGGCGTCCCCAAGCCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: NCMCGSVRVEPINMYSILNQIYG*ASPSPS Trigger: ACTGGGGCTTGGGGACGCTCAGCCATAAATCTGGTT...TAATATGCTATACATATTGATGGGCTCCACACGGACACTTCCACACATGCAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCATTCCCAGCAACCACATaGTGGCTTATAACCATCAGT | + |
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Preference number: 2 (lower is better) Translates to: VKSTDCSSRGPEFKSQQPFPATT*WLITIS Trigger: ACTGATGGTTATAAGCCATCATGTGGTTGCTGGGAA...TGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR CCA 90 bp | CAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCAGACAAAACTGCATGTGTaGAAGTGTCCGTGTGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: QNQVICKKISSWAGEMVQTKLHV*KCPCGA Trigger: GGCTCCACACGGACACTTCCACACATGCAGTTTTGT...CTGAACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | TTCTCAAGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTGGAATCCAAGTATTCTCGTCTCCCTGTaGTGCACTGTGGCATCTTTT | + |
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Preference number: 2 (lower is better) Translates to: FSSFFWSVCNSVSRWNPSILVSL*CTVASF Trigger: AAAAGATGCCACAGTGCATCACAGGGAGACGAGAAT...ACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCTTGAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | AACTGCATGTGTGGAAGTGTCCGTGTGGAGCCCATCAATATGTATAGCATATTATATGTGGTTAACTCATaGAATGCAGACAACCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: NCMCGSVRVEPINMYSILYVVNS*NADNQV Trigger: GACTTGGTTGTCTGCATTTCATGAGTTAACCACATA...TAATATGCTATACATATTGATGGGCTCCACACGGACACTTCCACACATGCAGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR GCA 90 bp | GAACAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCCAGCAACCACATGGTaGCTCACAACCATCTGTAAT | + |
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Preference number: 2 (lower is better) Translates to: EQNQVICKKISSWAGEMVPATTW*LTTICN Trigger: ATTACAGATGGTTGTGAGGCACCATGTGGTTGCTGG...AACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR CCA 90 bp | TTCTCAAGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTGGAATCCAAGTCCCTGTGATGCACTGTaGCATCTTTTGAGGTCTTAT | + |
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Preference number: 2 (lower is better) Translates to: FSSFFWSVCNSVSRWNPSPCDAL*HLLRSY Trigger: ATAAGACCTCAAAAGATGCCACAGTGCATCACAGGG...ACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCTTGAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR TCA 90 bp | CAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCAGCACTGTGGCATCTTTTaGGGTCTTATTTTATACAAC | + |
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Preference number: 2 (lower is better) Translates to: QNQVICKKISSWAGEMVQHCGIF*GLILYN Trigger: GTTGTATAAAATAAGACCTCAAAAGATGCCACAGTG...CTGAACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR-3UTR CAA 90 bp | CATGAACCCAGGTCCCCATCAACACAGAAGCCACAAATCAGAACAGAATCAAGTGCACTGTGGCATCTTTaGAGGTCTTATTTTATACAA | + |
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Preference number: 3 (lower is better) Translates to: HEPRSPSTQKPQIRTESSALWHL*RSYFIQ Trigger: TTGTATAAAATAAGACCTCAAAAGATGCCACAGTGC...ACTTGATTCTGTTCTGATTTGTGGCTTCTGTGTTGATGGGGACCTGGGTTCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR TCA 72 bp | TTAACTCATGAAATGCAGACAACCAAGTCAAGACTCTaGAATGTGGACAGCGTATCCCTAAATGCTGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: LTHEMQTTKSRL*NVDSVSLNAEN Trigger: GTTCTCAGCATTTAGGGATACGCTGTCCACATTTCAGAGTCTTGACTTGGTTGTCTGCATTTCATGAGTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR TCA 72 bp | GGGTATAAAGACTTAAGAGGCATTCTCGTCTCCCTGTaGTGCACTGTGGCATCTTTTGAGGTCTTATTTTAT | + |
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Preference number: 3 (lower is better) Translates to: GYKDLRGILVSL*CTVASFEVLFY Trigger: ATAAAATAAGACCTCAAAAGATGCCACAGTGCATCACAGGGAGACGAGAATGCCTCTTAAGTCTTTATACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR CCA 72 bp | AGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTaGAATCCAAGTTCACAAAAACCACTGACTTACCTC | + |
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Preference number: 3 (lower is better) Translates to: SFFWSVCNSVSR*NPSSQKPLTYL Trigger: GAGGTAAGTCAGTGGTTTTTGTGAACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR TCA 72 bp | ATATGTGGTGCTCAGGTTGGGGTGATACTAAGTAACTaGAGATATAGCCATATGACATTATTCATCATAGCA | + |
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Preference number: 3 (lower is better) Translates to: ICGAQVGVILSN*RYSHMTLFIIA Trigger: TGCTATGATGAATAATGTCATATGGCTATATCTTCAGTTACTTAGTATCACCCCAACCTGAGCACCACATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| 3UTR CCA 72 bp | GTGCAAAATGACCATTTAGCGATGATTAAACATATGTaGTTAACTCATGAAATGCAGACAACCAAGTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: VQNDHLAMIKHM*LTHEMQTTKSR Trigger: TCTTGACTTGGTTGTCTGCATTTCATGAGTTAACCACATATGTTTAATCATCGCTAAATGGTCATTTTGCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CCA 90 bp | TTCTCAAGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTGGAATCCAAGTTTTGGAGCCACAGCGTaGGCAACAGCAACAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: FSSFFWSVCNSVSRWNPSFGATA*ATATAQ Trigger: CTGTGCTGTTGCTGTTGCCCACGCTGTGGCTCCAAA...ACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCTTGAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR TCA 90 bp | TTCTCAAGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTGGAATCCAAGTTCACCTCAATGCTGTTaGTGCTCTCTCCCTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: FSSFFWSVCNSVSRWNPSSPQCC*CSLPVP Trigger: AGGAACAGGGAGAGAGCATCAACAGCATTGAGGTGA...ACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCTTGAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR TCA 90 bp | CAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCAGGCTCTCTTTCATAAATaGCAGCTTGCTGGACGAGCA | + |
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Preference number: 4 (lower is better) Translates to: QNQVICKKISSWAGEMVQALFHK*QLAGRA Trigger: TGCTCGTCCAGCAAGCTGTCATTTATGAAAGAGAGC...CTGAACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR TCA 90 bp | CAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCAGACCAGAAGAGATATCTaGATGAAAAGGTCCCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QNQVICKKISSWAGEMVQTRRDI*MKRSRR Trigger: CCTCCGGGACCTTTTCATTCAGATATCTCTTCTGGT...CTGAACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR GCA 90 bp | CATGAACCCAGGTCCCCATCAACACAGAAGCCACAAATCAGAACAGAATCAAGTCTGTTAATATTCTCCTaGAGTTTTTGGATCTCATGT | + |
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Preference number: 4 (lower is better) Translates to: HEPRSPSTQKPQIRTESSLLIFS*SFWISC Trigger: ACATGAGATCCAAAAACTGCAGGAGAATATTAACAG...ACTTGATTCTGTTCTGATTTGTGGCTTCTGTGTTGATGGGGACCTGGGTTCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR GCA 90 bp | AACTGCATGTGTGGAAGTGTCCGTGTGGAGCCCATCAATATGTATAGCATATTAAATTTCCGAGAGCTGTaGTTTAGTGATACTGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: NCMCGSVRVEPINMYSILNFREL*FSDTGF Trigger: GAAACCAGTATCACTAAAGCACAGCTCTCGGAAATT...TAATATGCTATACATATTGATGGGCTCCACACGGACACTTCCACACATGCAGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CCA 90 bp | TTCTCAAGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTGGAATCCAAGTTTCTCCTGCAGTTTTTaGATCTCATGTAGGTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: FSSFFWSVCNSVSRWNPSFSCSF*ISCRCL Trigger: GAGGCACCTACATGAGATCCAAAAACTGCAGGAGAA...ACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCTTGAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR TCA 90 bp | TTCTCAAGCTTTTTCTGGTCTGTATGTAATTCAGTTTCTCGCTGGAATCCAAGTTCCCATTTTCCATGGTaGAGCATGTCATTCACTTCT | + |
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Preference number: 4 (lower is better) Translates to: FSSFFWSVCNSVSRWNPSSHFPW*SMSFTS Trigger: AGAAGTGAATGACATGCTTCACCATGGAAAATGGGA...ACTTGGATTCCAGCGAGAAACTGAATTACATACAGACCAGAAAAAGCTTGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CCA 90 bp | GAACAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCGGAGGTCCTTCACTTaGTTCTCCAAATTCACAAGT | + |
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Preference number: 4 (lower is better) Translates to: EQNQVICKKISSWAGEMVRRSFT*FSKFTS Trigger: ACTTGTGAATTTGGAGAACCAAGTGAAGGACCTCCG...AACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACTGGACGAGCACCCCTaGTTCCTCTTCCACAAACAC | + |
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Preference number: 5 (lower is better) Translates to: VKSTDCSSRGPEFKSQQPLDEHP*FLFHKH Trigger: GTGTTTGTGGAAGAGGAACAAGGGGTGCTCGTCCAG...TGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACCGGAGGTCCTTCACTaGGTTCTCCAAATTCACAAG | + |
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Preference number: 5 (lower is better) Translates to: VKSTDCSSRGPEFKSQQPPEVLH*VLQIHK Trigger: CTTGTGAATTTGGAGAACCAAGTGAAGGACCTCCGG...TGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS TCA 90 bp | ATGCTGTTGATGCTCTCTCCCTGTTCCTCTACCAGAAGAGATATCTaGATGAAAAGGTCCCGGAGGTCCTTCACTTGGTTCTCCAAATTC | + |
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Preference number: 5 (lower is better) Translates to: MLLMLSPCSSTRRDI*MKRSRRSFTWFSKF Trigger: GAATTTGGAGAACCAAGTGAAGGACCTCCGGGACCTTTTCATTCAGATATCTCTTCTGGTAGAGGAACAGGGAGAGAGCATCAACAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS TCA 90 bp | TATAGAAACATGGTTTGCTGGAAGCGGCGGAACATCGCAGCATACTaGGACTTCAGTATCCTTGTGACCACTGATGATGGACCATTTTCA | + |
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Preference number: 5 (lower is better) Translates to: YRNMVCWKRRNIAAY*DFSILVTTDDGPFS Trigger: TGAAAATGGTCCATCATCAGTGGTCACAAGGATACTGAAGTCTCAGTATGCTGCGATGTTCCGCCGCTTCCAGCAAACCATGTTTCTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCAGTTTATGTGTTCTGCTaGGATTTTTATCTCCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: VKSTDCSSRGPEFKSQQPVYVFC*DFYLLC Trigger: GCAAAGGAGATAAAAATCCAAGCAGAACACATAAAC...TGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCAGTAAGTAAGCTTTCGTaGAAAACTTCCCATTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: VKSTDCSSRGPEFKSQQPVSKLS*KTSHFP Trigger: TGGAAAATGGGAAGTTTTCAACGAAAGCTTACTTAC...TGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | CAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTCAGATCACCTCAATGCTGTaGATGCTCTCTCCCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: QNQVICKKISSWAGEMVQITSML*MLSPCS Trigger: GGAACAGGGAGAGAGCATCAACAGCATTGAGGTGAT...CTGAACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS CCA 90 bp | TGCATTTTTCTTGCTTTAAAGCTATTGTGTCATTGTATAGAAACATaGTTTGCTGGAAGCGGCGGAACATCGCAGCATACTGAGACTTCA | + |
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Preference number: 5 (lower is better) Translates to: CIFLALKLLCHCIET*FAGSGGTSQHTETS Trigger: TGAAGTCTCAGTATGCTGCGATGTTCCGCCGCTTCCAGCAAACCATGTTTCTATACAATGACACAATAGCTTTAAAGCAAGAAAAATGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | GAACAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTGACTTTTTCACTTCTTaGACTACGTCACCCAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: EQNQVICKKISSWAGEMVDFFTS*TTSPSA Trigger: GGCACTGGGTGACGTAGTCAAAGAAGTGAAAAAGTC...AACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTGTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS-3UTR CAA 90 bp | GAACAGAATCAAGTTATTTGTAAGAAAATAAGTAGCTGGGCTGGTGAGATGGTTAAATTCACAAGTTCCTaGTGTCTCTGTTCAATTTCC | + |
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Preference number: 5 (lower is better) Translates to: EQNQVICKKISSWAGEMVKFTSS*CLCSIS Trigger: GGAAATTGAACAGAGACACAAGGAACTTGTGAATTT...AACCATCTCACCAGCCCAGCTACTTATTTTCTTACAAATAACTTGATTCTGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS TCA 72 bp | TGGACGAGCACCCCTTGTTCCTCTTCCACAAACACCTaGCCGTCCCGAGAGAGTTCTATTTCCTTGGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: WTSTPCSSSTNT*PSRESSISLVF Trigger: GAAAACCAAGGAAATAGAACTCTCTCGGGACGGTCAGGTGTTTGTGGAAGAGGAACAAGGGGTGCTCGTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS TCA 72 bp | TCTCTCCCTGTTCCTCTACCAGAAGAGATATCTGAATaGAAAGGTCCCGGAGGTCCTTCACTTGGTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SLPVPLPEEISE*KGPGGPSLGSP Trigger: TGGAGAACCAAGTGAAGGACCTCCGGGACCTTTTCATTCAGATATCTCTTCTGGTAGAGGAACAGGGAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS TCA 72 bp | ATGCTCTCTCCCTGTTCCTCTACCAGAAGAGATATCTaGATGAAAAGGTCCCGGAGGTCCTTCACTTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: MLSPCSSTRRDI*MKRSRRSFTWF Trigger: GAACCAAGTGAAGGACCTCCGGGACCTTTTCATTCAGATATCTCTTCTGGTAGAGGAACAGGGAGAGAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS CAA 90 bp | AGGTCCCGGAGGTCCTTCACTTGGTTCTCCAAATTCACAAGTTCCTaGTGTCTCTGTTCAATTTCCGAGAGCTGTGCTTTAGTGATACTG | + |
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Preference number: 6 (lower is better) Translates to: RSRRSFTWFSKFTSS*CLCSISESCALVIL Trigger: CAGTATCACTAAAGCACAGCTCTCGGAAATTGAACAGAGACACAAGGAACTTGTGAATTTGGAGAACCAAGTGAAGGACCTCCGGGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS CAA 72 bp | AGATATCTGAATGAAAAGGTCCCGGAGGTCCTTCACTaGGTTCTCCAAATTCACAAGTTCCTTGTGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RYLNEKVPEVLH*VLQIHKFLVSL Trigger: CAGAGACACAAGGAACTTGTGAATTTGGAGAACCAAGTGAAGGACCTCCGGGACCTTTTCATTCAGATATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS CAA 72 bp | AGGTCCTTCACTTGGTTCTCCAAATTCACAAGTTCCTaGTGTCTCTGTTCAATTTCCGAGAGCTGTGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: RSFTWFSKFTSS*CLCSISESCAL Trigger: TAAAGCACAGCTCTCGGAAATTGAACAGAGACACAAGGAACTTGTGAATTTGGAGAACCAAGTGAAGGACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS CAA 90 bp | TACCAGAAGAGATATCTGAATGAAAAGGTCCCGGAGGTCCTTCACTaGGTTCTCCAAATTCACAAGTTCCTTGTGTCTCTGTTCAATTTC | + |
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Preference number: 6 (lower is better) Translates to: YQKRYLNEKVPEVLH*VLQIHKFLVSLFNF Trigger: GAAATTGAACAGAGACACAAGGAACTTGTGAATTTGGAGAACCAAGTGAAGGACCTCCGGGACCTTTTCATTCAGATATCTCTTCTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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| CDS TCA 72 bp | GAAGCCACTAGACTTTTCTGTTGCTGTCCAAATCGTTaGACATCATCCACAAAACTGTTAATATTCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: EATRLFCCCPNR*TSSTKLLIFSC Trigger: GCAGGAGAATATTAACAGTTTTGTGGATGATGTTCAACGATTTGGACAGCAACAGAAAAGTCTAGTGGCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055557.6 |
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