Pregenerated sensors for STX18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029125Ensembl transcript IDs: ENSMUST00000031008.13, ENSMUST00000042146.15, ENSMUST00000114126.9, ENSMUST00000146864.6, ENSMUST00000154929.5, ENSMUST00000202412.4
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGGGCCCCAAGCCTGTAATGGAGATAGGAGGCCTGCCATTTCCTTaGTCTGCTCAGTCCCCACCATGCTTGTGGCCTGTCCTGAAGGTG | + |
|
Preference number: 1 (lower is better) Translates to: MGPKPVMEIGGLPFP*SAQSPPCLWPVLKV Trigger: CACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATCTCCATTACAGGCTTGGGGCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CCA 90 bp | TCTGAGGTCCACACCCTTCTTGGAACACAAATATCTGGGACTCAGTaGCAGGAAATGAGGCTTCGTGTGCCTCTAGGCCCTAGCTTTGAT | + |
|
Preference number: 1 (lower is better) Translates to: SEVHTLLGTQISGTQ*QEMRLRVPLGPSFD Trigger: ATCAAAGCTAGGGCCTAGAGGCACACGAAGCCTCATTTCCTGCCACTGAGTCCCAGATATTTGTGTTCCAAGAAGGGTGTGGACCTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR GCA 90 bp | AGCTCGTGGGTACTTAAGCCGCACACTGGACTGTCTGTACTCATGTaGTTCCGCAGGAATTGTGTAACCCAGGATACATCTGTACACAGA | + |
|
Preference number: 1 (lower is better) Translates to: SSWVLKPHTGLSVLM*FRRNCVTQDTSVHR Trigger: TCTGTGTACAGATGTATCCTGGGTTACACAATTCCTGCGGAAGCACATGAGTACAGACAGTCCAGTGTGCGGCTTAAGTACCCACGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR GCA 90 bp | TCTGAGACCTTTGTGAACAAGCATGGTGGCCACCATCAGCTCCACTaGTGCTTCCTGAGGTGTGCTACTGAGACAACATCATGTATTGTT | + |
|
Preference number: 1 (lower is better) Translates to: SETFVNKHGGHHQLH*CFLRCATETTSCIV Trigger: AACAATACATGATGTTGTCTCAGTAGCACACCTCAGGAAGCAGCAGTGGAGCTGATGGTGGCCACCATGCTTGTTCACAAAGGTCTCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR CCA 90 bp | CTATTCCTGATTGTTTTCTTCCATGTTCTCAGAATGTGTTGTTTCTaGTGGGCATGTCAGAAGTCTCGGCGTCCTTTAGTAGGTCAGAAA | + |
|
Preference number: 1 (lower is better) Translates to: LFLIVFFHVLRMCCF*WACQKSRRPLVGQK Trigger: TTTCTGACCTACTAAAGGACGCCGAGACTTCTGACATGCCCACCAGAAACAACACATTCTGAGAACATGGAAGAAAACAATCAGGAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR TCA 90 bp | ATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTCAGCTCCACAGCCGATaGGACACATGCTGGCACGTG | + |
|
Preference number: 2 (lower is better) Translates to: IGGLPFPCSAQSPPCLWPQLHSR*DTCWHV Trigger: CACGTGCCAGCATGTGTCTCATCGGCTGTGGAGCTG...AGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR TCA 90 bp | CCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTTTATTTCAGCTCCACAGCCGATaGGACACATGCTGGCACGTG | + |
|
Preference number: 2 (lower is better) Translates to: PTMLVACPEGAAPDGLLFQLHSR*DTCWHV Trigger: CACGTGCCAGCATGTGTCTCATCGGCTGTGGAGCTG...AAATAAAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CCA 90 bp | ATGTGTTGTTTCTGGTGGGCATGTCAGAAGTCTCGGCGTCCTTTAGTAGGTCAGGCCTGTCCAGCCAGGTaGTGGCCAGAGGGGCTCAGT | + |
|
Preference number: 2 (lower is better) Translates to: MCCFWWACQKSRRPLVGQACPAR*WPEGLS Trigger: ACTGAGCCCCTCTGGCCACCACCTGGCTGGACAGGC...CTGACCTACTAAAGGACGCCGAGACTTCTGACATGCCCACCAGAAACAACACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR GCA 90 bp | TGCTCAGTCCCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCACCCTGAAGGGCACTTaGAATCCATGTATTTCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: CSVPTMLVACPEGAAPDGTLKGT*NPCISR Trigger: CCTGGAAATACATGGATTGCAAGTGCCCTTCAGGGT...GCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CCA 90 bp | CAGCACAGGGGGAGGGGCCACACAGTCACGAGCTTGAAGTGCATTGGAAAGCTGTGTTTTCCCAGCCCTTaGACCTTACACAGCTCCACA | + |
|
Preference number: 2 (lower is better) Translates to: QHRGRGHTVTSLKCIGKLCFPSP*TLHSST Trigger: TGTGGAGCTGTGTAAGGTCCAAGGGCTGGGAAAACA...CAGCTTTCCAATGCACTTCAAGCTCGTGACTGTGTGGCCCCTCCCCCTGTGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR CAA 90 bp | GCACTTGCAATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTaGGCTTGGGGGCGGTGTTTTCCCAGCCCTTGGACCTTACACAGC | + |
|
Preference number: 2 (lower is better) Translates to: ALAIHVFPGPERFQR*AWGRCFPSPWTLHS Trigger: GCTGTGTAAGGTCCAAGGGCTGGGAAAACACCGCCCCCAAGCCAACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CAA 90 bp | ATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTaGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTTTATTTT | + |
|
Preference number: 2 (lower is better) Translates to: IGGLPFPCSAQSPPC*WPVLKVLLLMAFYF Trigger: AAAATAAAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR TCA 90 bp | GCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCAGCCAGCTCCACAGCCGATaGGACACATGCTGGCACGTG | + |
|
Preference number: 2 (lower is better) Translates to: ARQGRCELLSMTKWPCISQLHSR*DTCWHV Trigger: CACGTGCCAGCATGTGTCTCATCGGCTGTGGAGCTG...GCTGATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CCA 90 bp | CCTGAAGGGCACTTGCAATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTTGTTTTCCCAGCCCTTaGACCTTACACAGCTCCACA | + |
|
Preference number: 2 (lower is better) Translates to: PEGHLQSMYFQVLRGSKGCFPSP*TLHSST Trigger: TGTGGAGCTGTGTAAGGTCCAAGGGCTGGGAAAACA...ACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGCCCTTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR GCA 90 bp | GGGAGGGGCCACACAGTCACGAGCTTGAAGTGCATTGGAAAGCTGCGAGGAATGTCAGCACACATTAGATaGCACAAGGAAATAAGAACT | + |
|
Preference number: 2 (lower is better) Translates to: GRGHTVTSLKCIGKLRGMSAHIR*HKEIRT Trigger: AGTTCTTATTTCCTTGTGGCATCTAATGTGTGCTGA...CATTCCTCGCAGCTTTCCAATGCACTTCAAGCTCGTGACTGTGTGGCCCCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR CCA 90 bp | GCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCAGCTCCCCACCATGCTTGTaGCCTGTCCTGAAGGTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: ARQGRCELLSMTKWPCISSPPCL*PVLKVL Trigger: CAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGA...GCTGATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CCA 90 bp | ATGTGTTGTTTCTGGTGGGCATGTCAGAAGTCTCGGCGTCCTTTAGTAGGTCAGGGTCCACACCCTTCTTaGAACACAAATATCTGGGAC | + |
|
Preference number: 2 (lower is better) Translates to: MCCFWWACQKSRRPLVGQGPHPS*NTNIWD Trigger: GTCCCAGATATTTGTGTTCCAAGAAGGGTGTGGACC...CTGACCTACTAAAGGACGCCGAGACTTCTGACATGCCCACCAGAAACAACACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR GCA 90 bp | GCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCAGCGCCATTTCCTTGCTCTaGTCAGTCCCCACCATGCTT | + |
|
Preference number: 2 (lower is better) Translates to: ARQGRCELLSMTKWPCISAISLL*SVPTML Trigger: AAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGC...GCTGATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR GCA 90 bp | ATTAGATGCCACAAGGAAATAAGAACTGATGACTTTAGCAACATTAGGCATGTTGGCCTGCCATTTCCTTaGTCTGCTCAGTCCCCACCA | + |
|
Preference number: 2 (lower is better) Translates to: IRCHKEIRTDDFSNIRHVGLPFP*SAQSPP Trigger: TGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCC...AACATGCCTAATGTTGCTAAAGTCATCAGTTCTTATTTCCTTGTGGCATCTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CAA 90 bp | GAAAAAGCTATTCCTGATTGTTTTCTTCCATGTTCTCAGAATGTGTaGTTTCTGGTGGGCATGTCAGAAGTCTCGGCGTCCTTTAGTAGG | + |
|
Preference number: 2 (lower is better) Translates to: EKAIPDCFLPCSQNV*FLVGMSEVSASFSR Trigger: CCTACTAAAGGACGCCGAGACTTCTGACATGCCCACCAGAAACAACACATTCTGAGAACATGGAAGAAAACAATCAGGAATAGCTTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR GCA 90 bp | TTAGCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCACCCTGAAGGGCACTTaGAATCCATGTATTTCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: LARQGRCELLSMTKWPCITLKGT*NPCISR Trigger: CCTGGAAATACATGGATTGCAAGTGCCCTTCAGGGT...GATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CCA 90 bp | CTCATGTGCTTCCGCAGGAATTGTGTAACCCAGGATACATCTGTACACAGATGTTTGTCTATGACAAAATaGCCATGTATCAGCACACAT | + |
|
Preference number: 2 (lower is better) Translates to: LMCFRRNCVTQDTSVHRCLSMTK*PCISTH Trigger: ATGTGTGCTGATACATGGCCATTTTGTCATAGACAA...ACATCTGTGTACAGATGTATCCTGGGTTACACAATTCCTGCGGAAGCACATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR TCA 72 bp | TCCCAGCCCTTGGACCTTACACAGCTCCACAGCCGATaGGACACATGCTGGCACGTGGTGCGTCCAAGGCAC | + |
|
Preference number: 3 (lower is better) Translates to: SQPLDLTQLHSR*DTCWHVVRPRH Trigger: GTGCCTTGGACGCACCACGTGCCAGCATGTGTCTCATCGGCTGTGGAGCTGTGTAAGGTCCAAGGGCTGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CAA 90 bp | GCTCAGTCCCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCGTGTTTTCCCAGCCCTaGGACCTTACACAGCTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: AQSPPCLWPVLKVLLLMAVFSQP*DLTQLH Trigger: GTGGAGCTGTGTAAGGTCCAAGGGCTGGGAAAACAC...GGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR GCA 72 bp | CACAGGGGGAGGGGCCACACAGTCACGAGCTTGAAGTaGATTGGAAAGCTGCGAGGAATGCGCAAAGAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: HRGRGHTVTSLK*IGKLRGMRKEQ Trigger: TTGCTCTTTGCGCATTCCTCGCAGCTTTCCAATGCACTTCAAGCTCGTGACTGTGTGGCCCCTCCCCCTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR CCA 72 bp | CAAAGGTTGGCTTGGGGGCGGTGTTTTCCCAGCCCTTaGACCTTACACAGCTCCACAGCCGATGAGACACAT | + |
|
Preference number: 3 (lower is better) Translates to: QRLAWGRCFPSP*TLHSSTADETH Trigger: ATGTGTCTCATCGGCTGTGGAGCTGTGTAAGGTCCAAGGGCTGGGAAAACACCGCCCCCAAGCCAACCTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CCA 72 bp | CCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTaGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: PFPCSAQSPPCL*PVLKVLLLMAF Trigger: AAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CAA 90 bp | CTGATGACTTTAGCAACATTAGGCATGTTCTCCCCTGAAGCTACGGGCGTGGGAAGGCCTGCCATTTCCTaGCTCTGCTCAGTCCCCACC | + |
|
Preference number: 3 (lower is better) Translates to: LMTLATLGMFSPEATGVGRPAIS*LCSVPT Trigger: GGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCT...TCCCACGCCCGTAGCTTCAGGGGAGAACATGCCTAATGTTGCTAAAGTCATCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR TCA 72 bp | ACTGATGACTTTAGCAACATTAGGCATGTTCTCCCCTaGAGCTACGGGCGTGGGAAGGGCAGGAGATGGGCC | + |
|
Preference number: 3 (lower is better) Translates to: TDDFSNIRHVLP*SYGRGKGRRWA Trigger: GGCCCATCTCCTGCCCTTCCCACGCCCGTAGCTTCAGGGGAGAACATGCCTAATGTTGCTAAAGTCATCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR GCA 72 bp | AAGCCTGTAATGGAGATAGGAGGCCTGCCATTTCCTTaGTCTGCTCAGTCCCCACCATGCTTGTGGCCTGTC | + |
|
Preference number: 3 (lower is better) Translates to: KPVMEIGGLPFP*SAQSPPCLWPV Trigger: GACAGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATCTCCATTACAGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CCA 72 bp | GGGGAGGGGCCACACAGTCACGAGCTTGAAGTGCATTaGAAAGCTGCGAGGAATGCGCAAAGAGCAATACAC | + |
|
Preference number: 3 (lower is better) Translates to: GEGPHSHELEVH*KAARNAQRAIH Trigger: GTGTATTGCTCTTTGCGCATTCCTCGCAGCTTTCCAATGCACTTCAAGCTCGTGACTGTGTGGCCCCTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR TCA 72 bp | CTGAAGGGCACTTGCAATCCATGTATTTCCAGGTCCTaGGAGGTTCCAAAGGTTGGCTTGGGGGCGGTGTTT | + |
|
Preference number: 3 (lower is better) Translates to: LKGTCNPCISRS*EVPKVGLGAVF Trigger: AAACACCGCCCCCAAGCCAACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGCCCTTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CCA 72 bp | CACACCCTTCTTGGAACACAAATATCTGGGACTCAGTaGCAGGAAATGAGGCTTCGTGTGCCTCTAGGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: HTLLGTQISGTQ*QEMRLRVPLGP Trigger: AGGGCCTAGAGGCACACGAAGCCTCATTTCCTGCCACTGAGTCCCAGATATTTGTGTTCCAAGAAGGGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR CAA 90 bp | AGCTTGAAGTGCATTGGAAAGCTGCGAGGAATGCGCAAAGAGCAATACACATGTAGGCCTGCCATTTCCTaGCTCTGCTCAGTCCCCACC | + |
|
Preference number: 3 (lower is better) Translates to: SLKCIGKLRGMRKEQYTCRPAIS*LCSVPT Trigger: GGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCT...ACATGTGTATTGCTCTTTGCGCATTCCTCGCAGCTTTCCAATGCACTTCAAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR TCA 72 bp | GAGTATGCAGGAGCAAGAGCAGAAGGCCCACTCTTCTaGGGTCCACACCCTTCTTGGAACACAAATATCTGG | + |
|
Preference number: 3 (lower is better) Translates to: EYAGARAEGPLF*GPHPSWNTNIW Trigger: CCAGATATTTGTGTTCCAAGAAGGGTGTGGACCTCAGAAGAGTGGGCCTTCTGCTCTTGCTCCTGCATACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR GCA 72 bp | TTTGTGAACAAGCATGGTGGCCACCATCAGCTCCACTaGTGCTTCCTGAGGTGTGCTACTGAGACAACATCA | + |
|
Preference number: 3 (lower is better) Translates to: FVNKHGGHHQLH*CFLRCATETTS Trigger: TGATGTTGTCTCAGTAGCACACCTCAGGAAGCAGCAGTGGAGCTGATGGTGGCCACCATGCTTGTTCACAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR-3UTR CAA 90 bp | TTAGCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCAGGCCTGCCATTTCCTaGCTCTGCTCAGTCCCCACC | + |
|
Preference number: 3 (lower is better) Translates to: LARQGRCELLSMTKWPCIRPAIS*LCSVPT Trigger: GGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCT...GATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR-3UTR CAA 90 bp | CATGTATCAGCACACATTAGATGCCACAAGGAAATAAGAACTGATGACTTTAGCGTGTTTTCCCAGCCCTaGGACCTTACACAGCTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: HVSAHIRCHKEIRTDDFSVFSQP*DLTQLH Trigger: GTGGAGCTGTGTAAGGTCCAAGGGCTGGGAAAACAC...GCTAAAGTCATCAGTTCTTATTTCCTTGTGGCATCTAATGTGTGCTGATACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | ATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTTGGGCCGAGGGCTTCTaGGGAACAGCTCGTCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: IGGLPFPCSAQSPPCLWPWAEGF*GTARPG Trigger: GCCGGGACGAGCTGTTCCGCAGAAGCCCTCGGCCCA...AGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | CTGGCACGTGGTGCGTCCAAGGCACAGGCGCAGGCGCAGGCTCAGCCCTGGTGGGGGCTTTCTCAGATGTaGAGTCTTTCCTCTTGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LARGASKAQAQAQAQPWWGLSQM*SLSSWY Trigger: ATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCC...CCACCAGGGCTGAGCCTGCGCCTGCGCCTGTGCCTTGGACGCACCACGTGCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CAA 72 bp | CTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTaGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: LPFPCSAQSPPC*WPVLKVLLLMA Trigger: GGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | GAACTGATGACTTTAGCAACATTAGGCATGTTCTCCCCTGAAGCTACGGGCGTGACAGCTCGTCCCGGCTaGCATCGGCCCCGCCACCCA | + |
|
Preference number: 4 (lower is better) Translates to: ELMTLATLGMFSPEATGVTARPG*HRPRHP Trigger: TGGGTGGCGGGGCCGATGGCAGCCGGGACGAGCTGT...CACGCCCGTAGCTTCAGGGGAGAACATGCCTAATGTTGCTAAAGTCATCAGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | CCTGAAGGGCACTTGCAATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTTGGGCCGAGGGCTTCTaGGGAACAGCTCGTCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: PEGHLQSMYFQVLRGSKGWAEGF*GTARPG Trigger: GCCGGGACGAGCTGTTCCGCAGAAGCCCTCGGCCCA...ACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGCCCTTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | CAGCACAGGGGGAGGGGCCACACAGTCACGAGCTTGAAGTGCATTGGAAAGCTGAGCCAAAGGCTTTTCTaGCAGCTCCTCAGCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: QHRGRGHTVTSLKCIGKLSQRLF*QLLSSR Trigger: CCTGCTGCTGAGGAGCTGCCAGAAAAGCCTTTGGCT...CAGCTTTCCAATGCACTTCAAGCTCGTGACTGTGTGGCCCCTCCCCCTGTGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | CCTGATGGCCTTTTATTTTCCACCCTGAAGGGCACTTGCAATCCATGTATTTCCACAGCTCGTCCCGGCTaGCATCGGCCCCGCCACCCA | + |
|
Preference number: 4 (lower is better) Translates to: PDGLLFSTLKGTCNPCISTARPG*HRPRHP Trigger: TGGGTGGCGGGGCCGATGGCAGCCGGGACGAGCTGT...GGAAATACATGGATTGCAAGTGCCCTTCAGGGTGGAAAATAAAAGGCCATCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | CTCATGTGCTTCCGCAGGAATTGTGTAACCCAGGATACATCTGTACACAGATGTACAGCTCGTCCCGGCTaGCATCGGCCCCGCCACCCA | + |
|
Preference number: 4 (lower is better) Translates to: LMCFRRNCVTQDTSVHRCTARPG*HRPRHP Trigger: TGGGTGGCGGGGCCGATGGCAGCCGGGACGAGCTGT...ACATCTGTGTACAGATGTATCCTGGGTTACACAATTCCTGCGGAAGCACATGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR CAA 72 bp | ATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTaGGCTTGGGGGCGGTGTTTTCCCAGCCCTTGGACC | + |
|
Preference number: 4 (lower is better) Translates to: IHVFPGPERFQR*AWGRCFPSPWT Trigger: GGTCCAAGGGCTGGGAAAACACCGCCCCCAAGCCAACCTTTGGAACCTCTCAGGACCTGGAAATACATGGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| 3UTR CAA 72 bp | CAAGCCTGTAATGGAGATAGGAGGCCTGCCATTTCCTaGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QACNGDRRPAIS*LCSVPTMLVAC Trigger: ACAGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATCTCCATTACAGGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | CCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTTTATTTAGCCAAAGGCTTTTCTaGCAGCTCCTCAGCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PTMLVACPEGAAPDGLLFSQRLF*QLLSSR Trigger: CCTGCTGCTGAGGAGCTGCCAGAAAAGCCTTTGGCT...AAATAAAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR TCA 90 bp | GCTCAGTCCCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTCACCAATGAGTCGCTaGTTTTCTTGTTCAAACATC | + |
|
Preference number: 4 (lower is better) Translates to: AQSPPCLWPVLKVLLLMASPMSR*FSCSNI Trigger: GATGTTTGAACAAGAAAATCAGCGACTCATTGGTGA...GGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGGGACTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | GAACTGATGACTTTAGCAACATTAGGCATGTTCTCCCCTGAAGCTACGGGCGTGGCTCATCTTCACCCTTaGCATCGCCCCAGGTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: ELMTLATLGMFSPEATGVAHLHP*HRPRFP Trigger: TGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGC...CACGCCCGTAGCTTCAGGGGAGAACATGCCTAATGTTGCTAAAGTCATCAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | ACCTTACACAGCTCCACAGCCGATGAGACACATGCTGGCACGTGGTGCGTCCAACGCGCTTCACTCGGATaGCTCTTTGTTCAGAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: TLHSSTADETHAGTWCVQRASLG*LFVQSK Trigger: TTTACTCTGAACAAAGAGCCATCCGAGTGAAGCGCG...TTGGACGCACCACGTGCCAGCATGTGTCTCATCGGCTGTGGAGCTGTGTAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | ATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTCATCTGTATCTCTTCTaGAGACAGCTCATCTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: IGGLPFPCSAQSPPCLWPHLYLF*RQLIFT Trigger: GGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATG...AGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | ATGGAGATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGCGACTAACTGGTGAATaGTGTCGATCTCAGTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: MEIGGLPFPCSAQSPPCLRLTGE*CRSQFP Trigger: AGGAAACTGAGATCGACAGCATTCACCAGTTAGTCG...CAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATCTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR TCA 90 bp | CCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTTTATTTACACTCCTTCTGTTCTaGGTTGATGGATTGCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PTMLVACPEGAAPDGLLFTLLLF*VDGLLL Trigger: CAGAAGCAATCCATCAACTCAGAACAGAAGGAGTGT...AAATAAAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042146.15 |
||
| CDS-3UTR CCA 90 bp | CCTGATGGCCTTTTATTTTCCACCCTGAAGGGCACTTGCAATCCATGTATTTCCAGCCAAAGGCTTTTCTaGCAGCTCCTCAGCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PDGLLFSTLKGTCNPCISSQRLF*QLLSSR Trigger: CCTGCTGCTGAGGAGCTGCCAGAAAAGCCTTTGGCT...GGAAATACATGGATTGCAAGTGCCCTTCAGGGTGGAAAATAAAAGGCCATCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | TGCCACAAGGAAATAAGAACTGATGACTTTAGCAACATTAGGCATGTTCTCCCCGCTCATCTTCACCCTTaGCATCGCCCCAGGTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: CHKEIRTDDFSNIRHVLPAHLHP*HRPRFP Trigger: TGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGC...GGGGAGAACATGCCTAATGTTGCTAAAGTCATCAGTTCTTATTTCCTTGTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | ATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTTTATTTTCCACCCGACTAACTGGTGAATaGTGTCGATCTCAGTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: MLVACPEGAAPDGLLFSTRLTGE*CRSQFP Trigger: AGGAAACTGAGATCGACAGCATTCACCAGTTAGTCG...GGTGGAAAATAAAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | AGGGCACTTGCAATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTTGGCTCGCGCTTCACTCGGATaGCTCTTTGTTCAGAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: RALAIHVFPGPERFQRLARASLG*LFVQSK Trigger: TTTACTCTGAACAAAGAGCCATCCGAGTGAAGCGCG...AGCCAACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR TCA 90 bp | CCCACCATGCTTGTGGCCTGTCCTGAAGGTGCTGCTCCTGATGGCCTTTTATTTTCACCAATGAGTCGCTaGTTTTCTTGTTCAAACATC | + |
|
Preference number: 4 (lower is better) Translates to: PTMLVACPEGAAPDGLLFSPMSR*FSCSNI Trigger: GATGTTTGAACAAGAAAATCAGCGACTCATTGGTGA...AAATAAAAGGCCATCAGGAGCAGCACCTTCAGGACAGGCCACAAGCATGGTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | GAACTGATGACTTTAGCAACATTAGGCATGTTCTCCCCTGAAGCTACGGGCGTGGGGCTTTCTCAGATGTaGAGTCTTTCCTCTTGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: ELMTLATLGMFSPEATGVGLSQM*SLSSWY Trigger: ATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCC...CACGCCCGTAGCTTCAGGGGAGAACATGCCTAATGTTGCTAAAGTCATCAGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | CATGTATCAGCACACATTAGATGCCACAAGGAAATAAGAACTGATGACTTTAGCGCTCATCTTCACCCTTaGCATCGCCCCAGGTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: HVSAHIRCHKEIRTDDFSAHLHP*HRPRFP Trigger: TGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGC...GCTAAAGTCATCAGTTCTTATTTCCTTGTGGCATCTAATGTGTGCTGATACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | AGCTTGAAGTGCATTGGAAAGCTGCGAGGAATGCGCAAAGAGCAATACACATGTCATCTGTATCTCTTCTaGAGACAGCTCATCTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: SLKCIGKLRGMRKEQYTCHLYLF*RQLIFT Trigger: GGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATG...ACATGTGTATTGCTCTTTGCGCATTCCTCGCAGCTTTCCAATGCACTTCAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| 3UTR CAA 72 bp | ATTCCTGATTGTTTTCTTCCATGTTCTCAGAATGTGTaGTTTCTGGTGGGCATGTCAGAAGTCTCGGCGTCC | + |
|
Preference number: 4 (lower is better) Translates to: IPDCFLPCSQNV*FLVGMSEVSAS Trigger: GGACGCCGAGACTTCTGACATGCCCACCAGAAACAACACATTCTGAGAACATGGAAGAAAACAATCAGGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | GCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCAGCGGGCTTTCTCAGATGTaGAGTCTTTCCTCTTGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: ARQGRCELLSMTKWPCISGLSQM*SLSSWY Trigger: ATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCC...GCTGATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR TCA 90 bp | GCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCAGCTCACCAATGAGTCGCTaGTTTTCTTGTTCAAACATC | + |
|
Preference number: 4 (lower is better) Translates to: ARQGRCELLSMTKWPCISSPMSR*FSCSNI Trigger: GATGTTTGAACAAGAAAATCAGCGACTCATTGGTGA...GCTGATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CCA 90 bp | TTAGCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCCATCTGTATCTCTTCTaGAGACAGCTCATCTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: LARQGRCELLSMTKWPCIHLYLF*RQLIFT Trigger: GGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATG...GATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR GCA 90 bp | TCAGCACACATTAGATGCCACAAGGAAATAAGAACTGATGACTTTAGCAACATTCGACTAACTGGTGAATaGTGTCGATCTCAGTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SAHIRCHKEIRTDDFSNIRLTGE*CRSQFP Trigger: AGGAAACTGAGATCGACAGCATTCACCAGTTAGTCG...AATGTTGCTAAAGTCATCAGTTCTTATTTCCTTGTGGCATCTAATGTGTGCTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | CTGGCACGTGGTGCGTCCAAGGCACAGGCGCAGGCGCAGGCTCAGCCCTGGTGGCGCGTCTTCACTGTCTaGACGCTAGCCCGGAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LARGASKAQAQAQAQPWWRVFTV*TLARKS Trigger: GCTCTTCCGGGCTAGCGTCAAGACAGTGAAGACGCG...CCACCAGGGCTGAGCCTGCGCCTGCGCCTGTGCCTTGGACGCACCACGTGCCAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | GGAGATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGCGCGTCTTCACTGTCTaGACGCTAGCCCGGAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GDRRPAISLLCSVPTMLVRVFTV*TLARKS Trigger: GCTCTTCCGGGCTAGCGTCAAGACAGTGAAGACGCG...CACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS TCA 90 bp | CTCATCTTCACCCTTGCCATCGCCCCAGGTTCCCAGTTCGGGCTGTaGTTCAGCCAAAGGCTTTTCTGGCAGCTCCTCAGCAGCAGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LIFTLAIAPGSQFGL*FSQRLFWQLLSSRL Trigger: AAGCCTGCTGCTGAGGAGCTGCCAGAAAAGCCTTTGGCTGAATCACAGCCCGAACTGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS-3UTR CAA 90 bp | GGGAGGGGCCACACAGTCACGAGCTTGAAGTGCATTGGAAAGCTGCGAGGAATGGTGGAGTCTTTCCTCTaGGTATGTGGCTCAGGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: GRGHTVTSLKCIGKLRGMVESFL*VCGSGS Trigger: GGAACCTGAGCCACATACCAAGAGGAAAGACTCCAC...CATTCCTCGCAGCTTTCCAATGCACTTCAAGCTCGTGACTGTGTGGCCCCTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114126.9 |
||
| CDS TCA 90 bp | AGCTCCTCAGCAGCAGGCTTTCCTTCAGAGTCCTGGGAAGCGTTCTaGGGGGCTTTCTCAGATGTGGAGTCTTTCCTCTTGGTATGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SSSAAGFPSESWEAF*GAFSDVESFLLVCG Trigger: GCCACATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCCCTCAGAACGCTTCCCAGGACTCTGAAGGAAAGCCTGCTGCTGAGGAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS-3UTR CAA 90 bp | CCTGAAGGGCACTTGCAATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTCGCGTCTTCACTGTCTaGACGCTAGCCCGGAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PEGHLQSMYFQVLRGSKGRVFTV*TLARKS Trigger: GCTCTTCCGGGCTAGCGTCAAGACAGTGAAGACGCG...ACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGCCCTTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | GATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTTAGATAGTCTTTTCTaGTCCACCACGCGCTTCACT | + |
|
Preference number: 5 (lower is better) Translates to: DRRPAISLLCSVPTMLVALDSLF*STTRFT Trigger: AGTGAAGCGCGTGGTGGACAAGAAAAGACTATCTAA...GGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | ATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTTTAGATAGTCTTTTCTaGTCCACCACGCGCTTCACT | + |
|
Preference number: 5 (lower is better) Translates to: IGGLPFPCSAQSPPCLWPLDSLF*STTRFT Trigger: AGTGAAGCGCGTGGTGGACAAGAAAAGACTATCTAA...AGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | CCTGAAGGGCACTTGCAATCCATGTATTTCCAGGTCCTGAGAGGTTCCAAAGGTGTGGAGTCTTTCCTCTaGGTATGTGGCTCAGGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: PEGHLQSMYFQVLRGSKGVESFL*VCGSGS Trigger: GGAACCTGAGCCACATACCAAGAGGAAAGACTCCAC...ACCTTTGGAACCTCTCAGGACCTGGAAATACATGGATTGCAAGTGCCCTTCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | GGAGATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGAGTCGCTGATTTTCTaGTTCAAACATCTGTATCTC | + |
|
Preference number: 5 (lower is better) Translates to: GDRRPAISLLCSVPTMLVESLIF*FKHLYL Trigger: GAGATACAGATGTTTGAACAAGAAAATCAGCGACTC...CACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTATCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | ATAGGAGGCCTGCCATTTCCTTGCTCTGCTCAGTCCCCACCATGCTTGTGGCCTGAGTCGCTGATTTTCTaGTTCAAACATCTGTATCTC | + |
|
Preference number: 5 (lower is better) Translates to: IGGLPFPCSAQSPPCLWPESLIF*FKHLYL Trigger: GAGATACAGATGTTTGAACAAGAAAATCAGCGACTC...AGGCCACAAGCATGGTGGGGACTGAGCAGAGCAAGGAAATGGCAGGCCTCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | CATGTATCAGCACACATTAGATGCCACAAGGAAATAAGAACTGATGACTTTAGCGTGGAGTCTTTCCTCTaGGTATGTGGCTCAGGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: HVSAHIRCHKEIRTDDFSVESFL*VCGSGS Trigger: GGAACCTGAGCCACATACCAAGAGGAAAGACTCCAC...GCTAAAGTCATCAGTTCTTATTTCCTTGTGGCATCTAATGTGTGCTGATACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS-3UTR CAA 90 bp | TTAGCTCGACAAGGCAGATGTGAATTATTGTCTATGACAAAATGGCCATGTATCGAGTCGCTGATTTTCTaGTTCAAACATCTGTATCTC | + |
|
Preference number: 5 (lower is better) Translates to: LARQGRCELLSMTKWPCIESLIF*FKHLYL Trigger: GAGATACAGATGTTTGAACAAGAAAATCAGCGACTC...GATACATGGCCATTTTGTCATAGACAATAATTCACATCTGCCTTGTCGAGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 |
||
| CDS TCA 72 bp | ACCCTTGCCATCGCCCCAGGTTCCCAGTTCGGGCTGTaGTTCAGCCAAAGGCTTTTCTGGCAGCTCCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: TLAIAPGSQFGL*FSQRLFWQLLS Trigger: GCTGAGGAGCTGCCAGAAAAGCCTTTGGCTGAATCACAGCCCGAACTGGGAACCTGGGGCGATGGCAAGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS TCA 72 bp | GCAGCAGGCTTTCCTTCAGAGTCCTGGGAAGCGTTCTaGGGGGCTTTCTCAGATGTGGAGTCTTTCCTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: AAGFPSESWEAF*GAFSDVESFLL Trigger: CAAGAGGAAAGACTCCACATCTGAGAAAGCCCCTCAGAACGCTTCCCAGGACTCTGAAGGAAAGCCTGCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS GCA 72 bp | TCTGTATCTCTTCTGGAGACAGCTCATCTTCACCCTTaGCATCGCCCCAGGTTCCCAGTTCGGGCTGTGATT | + |
|
Preference number: 6 (lower is better) Translates to: SVSLLETAHLHP*HRPRFPVRAVI Trigger: AATCACAGCCCGAACTGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGCTGTCTCCAGAAGAGATACAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS CAA 72 bp | ATCTGTATCTCTTCTGGAGACAGCTCATCTTCACCCTaGCCATCGCCCCAGGTTCCCAGTTCGGGCTGTGAT | + |
|
Preference number: 6 (lower is better) Translates to: ICISSGDSSSSP*PSPQVPSSGCD Trigger: ATCACAGCCCGAACTGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGCTGTCTCCAGAAGAGATACAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS CCA 72 bp | AGTCCTGGGAAGCGTTCTGAGGGGCTTTCTCAGATGTaGAGTCTTTCCTCTTGGTATGTGGCTCAGGTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: SPGKRSEGLSQM*SLSSWYVAQVP Trigger: TGGAACCTGAGCCACATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCCCTCAGAACGCTTCCCAGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS CCA 72 bp | TCGCTGATTTTCTTGTTCAAACATCTGTATCTCTTCTaGAGACAGCTCATCTTCACCCTTGCCATCGCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: SLIFLFKHLYLF*RQLIFTLAIAP Trigger: TGGGGCGATGGCAAGGGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATGTTTGAACAAGAAAATCAGCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000031008.13 ENSMUST00000042146.15 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||
| CDS CCA 72 bp | ATAGTCTTTTCTTGTCCACCACGCGCTTCACTCGGATaGCTCTTTGTTCAGAGTAAAGCTTACACACTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: IVFSCPPRASLG*LFVQSKAYTLL Trigger: AAGGAGTGTGTAAGCTTTACTCTGAACAAAGAGCCATCCGAGTGAAGCGCGTGGTGGACAAGAAAAGACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042146.15 ENSMUST00000202412.4 |
||
| CDS CCA 72 bp | ATAGTCTTTTCTTGTCCACCACGCGCTTCACTCGGATaGCTCTTTGTTCAGAGTAAAGCTTACACACTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: IVFSCPPRASLG*LFVQSKAYTLF Trigger: AAAGAGTGTGTAAGCTTTACTCTGAACAAAGAGCCATCCGAGTGAAGCGCGTGGTGGACAAGAAAAGACTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031008.13 ENSMUST00000114126.9 ENSMUST00000146864.6 ENSMUST00000154929.5 |
||