RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STRBP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026915

Ensembl transcript IDs: ENSMUST00000028279.10, ENSMUST00000072186.12, ENSMUST00000145808.8, ENSMUST00000155237.2, ENSMUST00000183690.8, ENSMUST00000204569.2

Found 454 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTaGCAAGCAGACCCCACTCTCAGCCACAGCTGCACCACAGACTCC +
Preference number: 1 (lower is better)
Translates to: GEPDTLQFCHRLPPL*QADPTLSHSCTTDS
Trigger: GGAGTCTGTGGTGCAGCTGTGGCTGAGAGTGGGGTCTGCTTGGCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR CCA 90 bp GTACGTATGACAGATCCTACAAAGCAGAGCCCTAGCTGGGCGTGGTaGTGCCCGCCTTTAATCCCAGCACTCGGGAGGCAAAGGCAGGCG +
Preference number: 1 (lower is better)
Translates to: VRMTDPTKQSPSWAW*CPPLIPALGRQRQA
Trigger: CGCCTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGGGCACCACCACGCCCAGCTAGGGCTCTGCTTTGTAGGATCTGTCATACGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp CCAACATATTCAACACAAAGGAGCCGCAGTGTGGGTGCTGCTCGCTaGGCTCGGAGCAGCAGGGTCCCTTTGGATGAAGGCCAGGCATCT +
Preference number: 1 (lower is better)
Translates to: PTYSTQRSRSVGAAR*ARSSRVPLDEGQAS
Trigger: AGATGCCTGGCCTTCATCCAAAGGGACCCTGCTGCTCCGAGCCCAGCGAGCAGCACCCACACTGCGGCTCCTTTGTGTTGAATATGTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp TGCTCACAGATGTCCCTGCCAAGGACCCTTCCAGAATCCCCTCATTaGTCTGTGCTGTCCCATCTAAAGGCCTGCGGACTTGGACCAGGG +
Preference number: 1 (lower is better)
Translates to: CSQMSLPRTLPESPH*SVLSHLKACGLGPG
Trigger: CCCTGGTCCAAGTCCGCAGGCCTTTAGATGGGACAGCACAGAGCAATGAGGGGATTCTGGAAGGGTCCTTGGCAGGGACATCTGTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp GTCTATGGCAGAGTCCAACATATTCAACACAAAGGAGCCGCAGTGTaGGTGCTGCTCGCTGGGCTCGGAGCAGCAGGGTCCCTTTGGATG +
Preference number: 1 (lower is better)
Translates to: VYGRVQHIQHKGAAV*VLLAGLGAAGSLWM
Trigger: CATCCAAAGGGACCCTGCTGCTCCGAGCCCAGCGAGCAGCACCCACACTGCGGCTCCTTTGTGTTGAATATGTTGGACTCTGCCATAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp AAAGTACGTATGACAGATCCTACAAAGCAGAGCCCTAGCTGGGCGTaGTGGTGCCCGCCTTTAATCCCAGCACTCGGGAGGCAAAGGCAG +
Preference number: 1 (lower is better)
Translates to: KVRMTDPTKQSPSWA*WCPPLIPALGRQRQ
Trigger: CTGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGGGCACCACCACGCCCAGCTAGGGCTCTGCTTTGTAGGATCTGTCATACGTACTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp GGAAATCTATGGAGCCATTATGAGGCACAAGAGATGTGGCGCTCCTaGAGCCTTAAGGGGCACAGGTTGCCAGCCACACCTCTGGTGAAG +
Preference number: 1 (lower is better)
Translates to: GNLWSHYEAQEMWRS*SLKGHRLPATPLVK
Trigger: CTTCACCAGAGGTGTGGCTGGCAACCTGTGCCCCTTAAGGCTGCAGGAGCGCCACATCTCTTGTGCCTCATAATGGCTCCATAGATTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CAAAGGAGTAAGCACAACTCTGCCCTAAGCAGGCCATGCACCTGTTaGTTAACCAGCATAGTCTCACTTCCCTCACATCCTTCCCCCACC +
Preference number: 1 (lower is better)
Translates to: QRSKHNSALSRPCTC*LTSIVSLPSHPSPT
Trigger: GGTGGGGGAAGGATGTGAGGGAAGTGAGACTATGCTGGTTAAGCAACAGGTGCATGGCCTGCTTAGGGCAGAGTTGTGCTTACTCCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CCTGCGGACTTGGACCAGGGCTACTGCAATTGTGACTCAGCTCTATaGACTTCCTATGCTGTAAGTCAACTCACCCACCTGCGTCTTCTC +
Preference number: 1 (lower is better)
Translates to: PADLDQGYCNCDSAL*TSYAVSQLTHLRLL
Trigger: GAGAAGACGCAGGTGGGTGAGTTGACTTACAGCATAGGAAGTGCATAGAGCTGAGTCACAATTGCAGTAGCCCTGGTCCAAGTCCGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp AGGTATGTTGGAAATCTATGGAGCCATTATGAGGCACAAGAGATGTaGCGCTCCTGCAGCCTTAAGGGGCACAGGTTGCCAGCCACACCT +
Preference number: 1 (lower is better)
Translates to: RYVGNLWSHYEAQEM*RSCSLKGHRLPATP
Trigger: AGGTGTGGCTGGCAACCTGTGCCCCTTAAGGCTGCAGGAGCGCCACATCTCTTGTGCCTCATAATGGCTCCATAGATTTCCAACATACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp GTCTGTGAGCAAAGGAGTAAGCACAACTCTGCCCTAAGCAGGCCATaGACCTGTTGCTTAACCAGCATAGTCTCACTTCCCTCACATCCT +
Preference number: 1 (lower is better)
Translates to: VCEQRSKHNSALSRP*TCCLTSIVSLPSHP
Trigger: AGGATGTGAGGGAAGTGAGACTATGCTGGTTAAGCAACAGGTGCATGGCCTGCTTAGGGCAGAGTTGTGCTTACTCCTTTGCTCACAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CCAGAAAAAGGACCTGGCATCAGCAGGAACAGGATTACAGTGCACTaGACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGAC +
Preference number: 1 (lower is better)
Translates to: PEKGPGISRNRITVH*TSLLCFVQPLTEAD
Trigger: GTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTGATGCCAGGTCCTTTTTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000204569.2
3UTR GCA 90 bp ATATCAACTGGCTGGCATCAAACTACCCAGTCCATTTTGAGCCCTTaGTCCACCCCAGTGGCTATAAACACTACCATTGCCTTCCTGGTC +
Preference number: 1 (lower is better)
Translates to: ISTGWHQTTQSILSP*STPVAINTTIAFLV
Trigger: GACCAGGAAGGCAATGGTAGTGTTTATAGCCACTGGGGTGGAGCAAGGGCTCAAAATGGACTGGGTAGTTTGATGCCAGCCAGTTGATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp CACTGTCTCCCAGTCCTGTCACAGGTGATCACAATGGACATCCTGTaGCTTTTGACAGCTTCTCATTGCATAGCTAAGGCTGGCATGAAC +
Preference number: 1 (lower is better)
Translates to: HCLPVLSQVITMDIL*LLTASHCIAKAGMN
Trigger: GTTCATGCCAGCCTTAGCTATGCAATGAGAAGCTGTCAAAAGCCACAGGATGTCCATTGTGATCACCTGTGACAGGACTGGGAGACAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp CCTTGCATCACTATTTCTTTAGAGCTAGAAATGGACCACAGAAAGTaGGAGGGCTCTGCAGTGCTCTGCGTGCCATCCAGACCTCTCATT +
Preference number: 1 (lower is better)
Translates to: PCITISLELEMDHRK*EGSAVLCVPSRPLI
Trigger: AATGAGAGGTCTGGATGGCACGCAGAGCACTGCAGAGCCCTCTCACTTTCTGTGGTCCATTTCTAGCTCTAAAGAAATAGTGATGCAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp TGTCTTACTGATAACAGCCAATTTCCTGACATCTCTGCTTATAGGTaGGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTG +
Preference number: 1 (lower is better)
Translates to: CLTDNSQFPDISAYR*AGYFTVLPPPSAAL
Trigger: CAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGCTGTTATCAGTAAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR GCA 90 bp ATCAGCTTTCCAAACATGGTGAGAATGCAAGGAAGGACTTGGGTCTaGACCCTTCACAGACCAGCACAATGTTACTGGCTCCCAGTTTCT +
Preference number: 1 (lower is better)
Translates to: ISFPNMVRMQGRTWV*TLHRPAQCYWLPVS
Trigger: AGAAACTGGGAGCCAGTAACATTGTGCTGGTCTGTGAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CCCACAGTACACTTCTTACCTTCTGTTCTTCCAAAGCACCTCACCTaGCCTCATGTGGCACCTTCACATCAAAATGCCCACTTGTCTACT +
Preference number: 1 (lower is better)
Translates to: PTVHFLPSVLPKHLT*PHVAPSHQNAHLST
Trigger: AGTAGACAAGTGGGCATTTTGATGTGAAGGTGCCACATGAGGGCAGGTGAGGTGCTTTGGAAGAACAGAAGGTAAGAAGTGTACTGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CAGGTGATCACAATGGACATCCTGTGGCTTTTGACAGCTTCTCATTaGATAGCTAAGGCTGGCATGAACTCAGTCTTCCTCATGCACCAC +
Preference number: 1 (lower is better)
Translates to: QVITMDILWLLTASH*IAKAGMNSVFLMHH
Trigger: GTGGTGCATGAGGAAGACTGAGTTCATGCCAGCCTTAGCTATGCAATGAGAAGCTGTCAAAAGCCACAGGATGTCCATTGTGATCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp AACATCATCAGCTTTCCAAACATGGTGAGAATGCAAGGAAGGACTTaGGTCTGCACCCTTCACAGACCAGCACAATGTTACTGGCTCCCA +
Preference number: 1 (lower is better)
Translates to: NIISFPNMVRMQGRT*VCTLHRPAQCYWLP
Trigger: TGGGAGCCAGTAACATTGTGCTGGTCTGTGAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCTGATGATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp ACCCTGGGCTGCAAGTTGGCTGATTTAACTGCTGCAGCACAAATATaGGCAAATCTGTTCTGCCAAGTCTGTGAGCAAAGGAGTAAGCAC +
Preference number: 1 (lower is better)
Translates to: TLGCKLADLTAAAQI*ANLFCQVCEQRSKH
Trigger: GTGCTTACTCCTTTGCTCACAGACTTGGCAGAACAGATTTGCCCATATTTGTGCTGCAGCAGTTAAATCAGCCAACTTGCAGCCCAGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp ATGCAGCAGCAAAGAGAAGATGTGAACCATTCCTCTTCACTGCAATaGGGGCAATCTTTACGACACCCCTTTGTGAGGCAACAAAGCCAC +
Preference number: 1 (lower is better)
Translates to: MQQQREDVNHSSSLQ*GQSLRHPFVRQQSH
Trigger: GTGGCTTTGTTGCCTCACAAAGGGGTGTCGTAAAGATTGCCCCCATTGCAGTGAAGAGGAATGGTTCACATCTTCTCTTTGCTGCTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp ACCATTCTGAGGTGCTTTCATGCTACAGTGGCAGAGTTTAGAATGTaGCAGCAACTATGTGCCCTACATGCTCACTCCCATCCATCCATC +
Preference number: 1 (lower is better)
Translates to: TILRCFHATVAEFRM*QQLCALHAHSHPSI
Trigger: GATGGATGGATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCACATTCTAAACTCTGCCACTGTAGCATGAAAGCACCTCAGAATGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp CTAGAGCACTTTTCAGAACTTGGCTACCAAATAAGAGAATATTCCTaGGCCGAATGTGGTGGTGCACACCCTGTAATCCCAGCACATGGG +
Preference number: 1 (lower is better)
Translates to: LEHFSELGYQIREYS*AECGGAHPVIPAHG
Trigger: CCCATGTGCTGGGATTACAGGGTGTGCACCACCACATTCGGCTCAGGAATATTCTCTTATTTGGTAGCCAAGTTCTGAAAAGTGCTCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp TATTTCTTTAGAGCTAGAAATGGACCACAGAAAGTGAGAGGGCTCTaGAGTGCTCTGCGTGCCATCCAGACCTCTCATTCCTTCACACTT +
Preference number: 1 (lower is better)
Translates to: YFFRARNGPQKVRGL*SALRAIQTSHSFTL
Trigger: AAGTGTGAAGGAATGAGAGGTCTGGATGGCACGCAGAGCACTGCAGAGCCCTCTCACTTTCTGTGGTCCATTTCTAGCTCTAAAGAAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp AGCAAGGCCAACATGTCTCCTAGGCACATCACCTTGAAGGATGGCTaGAGATCACAAAAGCTCACTGAAAGCAAGCAGTTGTTGTTGGAA +
Preference number: 1 (lower is better)
Translates to: SKANMSPRHITLKDG*RSQKLTESKQLLLE
Trigger: TTCCAACAACAACTGCTTGCTTTCAGTGAGCTTTTGTGATCTGCAGCCATCCTTCAAGGTGATGTGCCTAGGAGACATGTTGGCCTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp TACTATGCACCAAACCTCATCAGCATGAGGTATGTTGGAAATCTATaGAGCCATTATGAGGCACAAGAGATGTGGCGCTCCTGCAGCCTT +
Preference number: 1 (lower is better)
Translates to: YYAPNLISMRYVGNL*SHYEAQEMWRSCSL
Trigger: AAGGCTGCAGGAGCGCCACATCTCTTGTGCCTCATAATGGCTCCATAGATTTCCAACATACCTCATGCTGATGAGGTTTGGTGCATAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp ACATGTCAAGGCATTACAAAGTGCAGCAGCCAAACAAGGAGTCTATaGCAGAGTCCAACATATTCAACACAAAGGAGCCGCAGTGTGGGT +
Preference number: 1 (lower is better)
Translates to: TCQGITKCSSQTRSL*QSPTYSTQRSRSVG
Trigger: ACCCACACTGCGGCTCCTTTGTGTTGAATATGTTGGACTCTGCCATAGACTCCTTGTTTGGCTGCTGCACTTTGTAATGCCTTGACATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp TTCAAGTGCCCTGGAGTAAGCACATATCACTCAGCTACCAATCAGTaGCTGCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCA +
Preference number: 1 (lower is better)
Translates to: FKCPGVSTYHSATNQ*LHQEPGSTLCYNKA
Trigger: TGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAGTGATATGTGCTTACTCCAGGGCACTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR TCA 90 bp AGCACCACTCTCTCCGATAGGAGAGAGATCTATCAGATCTGCTTATaGAGAGACTGCTACCCCATCTCTACTACAACTCAAGCAAATCCC +
Preference number: 1 (lower is better)
Translates to: STTLSDRREIYQICL*RDCYPISTTTQANP
Trigger: GGGATTTGCTTGAGTTGTAGTAGAGATGGGGTAGCAGTCTCTTCATAAGCAGATCTGATAGATCTCTCTCCTATCGGAGAGAGTGGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp TCACCAGACTTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTaGACCCGAAAAGGACTCTGTATAAAGTGCAGACCTCCTCAGTGG +
Preference number: 1 (lower is better)
Translates to: SPDLLRKPSLAALSH*TRKGLCIKCRPPQW
Trigger: CCACTGAGGAGGTCTGCACTTTATACAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR GCA 90 bp TTCTACCCTATGGAGTTTCGGGAATCCAGGTCTAGTCACCAGACTTaGTCAGAAAGCCTTCACTTGCTGCATTATCTCATTGAACCCGAA +
Preference number: 1 (lower is better)
Translates to: FYPMEFRESRSSHQT*SESLHLLHYLIEPE
Trigger: TTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGACTAGACCTGGATTCCCGAAACTCCATAGGGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR CCA 90 bp ACTTCTTACCTTCTGTTCTTCCAAAGCACCTCACCTGCCCTCATGTaGCACCTTCACATCAAAATGCCCACTTGTCTACTCATAGTTGTC +
Preference number: 1 (lower is better)
Translates to: TSYLLFFQSTSPALM*HLHIKMPTCLLIVV
Trigger: GACAACTATGAGTAGACAAGTGGGCATTTTGATGTGAAGGTGCCACATGAGGGCAGGTGAGGTGCTTTGGAAGAACAGAAGGTAAGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp ATCTCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTGGGCATaGCAACAGCCCCTTTCTCATCAGTCACAACAAGGTTCTTGGCTG +
Preference number: 1 (lower is better)
Translates to: ISTTTQANPFILIWA*QQPLSHQSQQGSWL
Trigger: CAGCCAAGAACCTTGTTGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp TACCCCATCTCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTaGGCATGGCAACAGCCCCTTTCTCATCAGTCACAACAAGGTTCT +
Preference number: 1 (lower is better)
Translates to: YPISTTTQANPFILI*AWQQPLSHQSQQGS
Trigger: AGAACCTTGTTGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGAGATGGGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp AAACAAAGGTCAAGGAAAGGAACAAATGACTGTGTGATACACATCTaGGCAGTATTTGTGCCCGCAGGCTCATCTCGCATTCCCTTCCAA +
Preference number: 1 (lower is better)
Translates to: KQRSRKGTNDCVIHI*AVFVPAGSSRIPFQ
Trigger: TTGGAAGGGAATGCGAGATGAGCCTGCGGGCACAAATACTGCTCAGATGTGTATCACACAGTCATTTGTTCCTTTCCTTGACCTTTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp CCCAACCCCTTACTTTGCCATACTATGCACCAAACCTCATCAGCATaGGGTATGTTGGAAATCTATGGAGCCATTATGAGGCACAAGAGA +
Preference number: 1 (lower is better)
Translates to: PNPLLCHTMHQTSSA*GMLEIYGAIMRHKR
Trigger: TCTCTTGTGCCTCATAATGGCTCCATAGATTTCCAACATACCTCATGCTGATGAGGTTTGGTGCATAGTATGGCAAAGTAAGGGGTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp AGTCTTCCTCATGCACCACCAAAGGCAGCTCATAGCTTCAGCATATaGTATCACATCCCACAGTACACTTCTTACCTTCTGTTCTTCCAA +
Preference number: 1 (lower is better)
Translates to: SLPHAPPKAAHSFSI*YHIPQYTSYLLFFQ
Trigger: TTGGAAGAACAGAAGGTAAGAAGTGTACTGTGGGATGTGATAGCATATGCTGAAGCTATGAGCTGCCTTTGGTGGTGCATGAGGAAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp CTAGAAGTCAGAGAAGAAATCTTGAGGGCCCAAGTGAATAATAAATaGTGCGACGCTCAGAGGCTGGCAATAGGGGCTGTCAATGAAAAA +
Preference number: 1 (lower is better)
Translates to: LEVREEILRAQVNNK*CDAQRLAIGAVNEK
Trigger: TTTTTCATTGACAGCCCCTATTGCCAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGCCCTCAAGATTTCTTCTCTGACTTCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp ATCAGAAAACTTAAGATACTTGCACTGATCATAGCCTCTGTTCCCTaGTCCCAGAAAAAGGACCTGGCATCAGCAGGAACAGGATTACAG +
Preference number: 1 (lower is better)
Translates to: IRKLKILALIIASVP*SQKKDLASAGTGLQ
Trigger: CTGTAATCCTGTTCCTGCTGATGCCAGGTCCTTTTTCTGGGACCAGGGAACAGAGGCTATGATCAGTGCAAGTATCTTAAGTTTTCTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000204569.2
3UTR CCA 90 bp TTGGAATTCAATCTATGTTTCCACATAACTCACCTCCTACCAGCCTaGGACTCAACCTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAA +
Preference number: 1 (lower is better)
Translates to: LEFNLCFHITHLLPA*DSTCPPSSVIKSLQ
Trigger: TTGCAAAGACTTGATCACAGAAGAGGGTGGACAGGTTGAGTCCCAGGCTGGTAGGAGGTGAGTTATGTGGAAACATAGATTGAATTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp AAGCAAATATATCCACAGAGCCTGCAGCTCTCAAGTAATGTTCACTaGACCTTAGGCCCAAGATGGAGGAAAGACTCACATTCCAAACTG +
Preference number: 1 (lower is better)
Translates to: KQIYPQSLQLSSNVH*TLGPRWRKDSHSKL
Trigger: CAGTTTGGAATGTGAGTCTTTCCTCCATCTTGGGCCTAAGGTTCAGTGAACATTACTTGAGAGCTGCAGGCTCTGTGGATATATTTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp GGTTCTTGGCTGTCTGGATGTTCTTTCACAATTTTCTCACCACACTaGAGAATTGTAATCACAAAGGGCACAGCACCCAGGGATCTTCAA +
Preference number: 1 (lower is better)
Translates to: GSWLSGCSFTIFSPH*RIVITKGTAPRDLQ
Trigger: TTGAAGATCCCTGGGTGCTGTGCCCTTTGTGATTACAATTCTTCAGTGTGGTGAGAAAATTGTGAAAGAACATCCAGACAGCCAAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp CATAGGATAGGAGGAGGGCTGCCAAAAGATTTTCACTGTAACCAATaGGAAGGTGATATCTGTATGTCCCTGGAGTTCTCACTGCTCAAA +
Preference number: 1 (lower is better)
Translates to: HRIGGGLPKDFHCNQ*EGDICMSLEFSLLK
Trigger: TTTGAGCAGTGAGAACTCCAGGGACATACAGATATCACCTTCTCATTGGTTACAGTGAAAATCTTTTGGCAGCCCTCCTCCTATCCTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CAATCTCAGGAGCTACTTAACCCAACCCCTTACTTTGCCATACTATaGACCAAACCTCATCAGCATGAGGTATGTTGGAAATCTATGGAG +
Preference number: 1 (lower is better)
Translates to: QSQELLNPTPYFAIL*TKPHQHEVCWKSME
Trigger: CTCCATAGATTTCCAACATACCTCATGCTGATGAGGTTTGGTGCATAGTATGGCAAAGTAAGGGGTTGGGTTAAGTAGCTCCTGAGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp AATCCAGGTCTAGTCACCAGACTTGCTCAGAAAGCCTTCACTTGCTaGATTATCTCATTGAACCCGAAAAGGACTCTGTATAAAGTGCAG +
Preference number: 1 (lower is better)
Translates to: NPGLVTRLAQKAFTC*IISLNPKRTLYKVQ
Trigger: CTGCACTTTATACAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGACTAGACCTGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR TCA 90 bp TTGAGATTGGCACTTGTATCCCTCAGCCTGTGCAGCAAATGCACATaGATTCTACAGCATGTCACCAGCATTACTGATTCTGATATCCTA +
Preference number: 1 (lower is better)
Translates to: LRLALVSLSLCSKCT*ILQHVTSITDSDIL
Trigger: TAGGATATCAGAATCAGTAATGCTGGTGACATGCTGTAGAATTCATGTGCATTTGCTGCACAGGCTGAGGGATACAAGTGCCAATCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp ATTCCTCTTCACTGCAATGGGGGCAATCTTTACGACACCCCTTTGTaGGGCAACAAAGCCACTTACACAAATGGTAAAGTTCTAAGAAGA +
Preference number: 1 (lower is better)
Translates to: IPLHCNGGNLYDTPL*GNKATYTNGKVLRR
Trigger: TCTTCTTAGAACTTTACCATTTGTGTAAGTGGCTTTGTTGCCTCACAAAGGGGTGTCGTAAAGATTGCCCCCATTGCAGTGAAGAGGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 90 bp CCAGAGAGAAAGAAAATATATTCCTGCTATCAGCTAAGGACAGACTaGACACTGCCAAGACTGAGCCAGTTTCCATCTATTCCATACTCA +
Preference number: 1 (lower is better)
Translates to: PERKKIYSCYQLRTD*TLPRLSQFPSIPYS
Trigger: TGAGTATGGAATAGATGGAAACTGGCTCAGTCTTGGCAGTGTGCAGTCTGTCCTTAGCTGATAGCAGGAATATATTTTCTTTCTCTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp AGCAGTTGTTGTTGGAACTTTCTAAATGAAAGATGCTTCTCAACCTaGCTAAAAACTGCCCTGAGGAAATTACCTAGAGGAGAGCAGGGT +
Preference number: 1 (lower is better)
Translates to: SSCCWNFLNERCFST*LKTALRKLPRGEQG
Trigger: ACCCTGCTCTCCTCTAGGTAATTTCCTCAGGGCAGTTTTTAGCCAGGTTGAGAAGCATCTTTCATTTAGAAAGTTCCAACAACAACTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp TGTACAGCCTTTAACAGAAGCCGACCTCATGAACTGCAGGTTCTTTaGATACTGAGATCACAGCTTACAGTCACTATATCTCAGCCTATT +
Preference number: 1 (lower is better)
Translates to: CTAFNRSRPHELQVL*ILRSQLTVTISQPI
Trigger: AATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGAACCTGCAGTTCATGAGGTCGGCTTCTGTTAAAGGCTGTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204569.2
3UTR GCA 90 bp GTAACCAATGAGAAGGTGATATCTGTATGTCCCTGGAGTTCTCACTaGTCAAAAACTGACAGACTTGGTGTCCCAAATACCTTTAACCTT +
Preference number: 1 (lower is better)
Translates to: VTNEKVISVCPWSSH*SKTDRLGVPNTFNL
Trigger: AAGGTTAAAGGTATTTGGGACACCAAGTCTGTCAGTTTTTGAGCAGTGAGAACTCCAGGGACATACAGATATCACCTTCTCATTGGTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp ATAAATCCTAAACAAGTATTTACAAACCCTGGGCTGCAAGTTGGCTaGTTTAACTGCTGCAGCACAAATATGGGCAAATCTGTTCTGCCA +
Preference number: 1 (lower is better)
Translates to: INPKQVFTNPGLQVG*FNCCSTNMGKSVLP
Trigger: TGGCAGAACAGATTTGCCCATATTTGTGCTGCAGCAGTTAAATCAGCCAACTTGCAGCCCAGGGTTTGTAAATACTTGTTTAGGATTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 90 bp AAGATTTTCACTGTAACCAATGAGAAGGTGATATCTGTATGTCCCTaGAGTTCTCACTGCTCAAAAACTGACAGACTTGGTGTCCCAAAT +
Preference number: 1 (lower is better)
Translates to: KIFTVTNEKVISVCP*SSHCSKTDRLGVPN
Trigger: ATTTGGGACACCAAGTCTGTCAGTTTTTGAGCAGTGAGAACTCCAGGGACATACAGATATCACCTTCTCATTGGTTACAGTGAAAATCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp GAATGCCCCAGCATAACACAAGGTACAAGAACTCCTCAAAGAAAATaGGTCAACAGCATCCTAAGCATGCTTCCTATAATAACTTGTTCT +
Preference number: 1 (lower is better)
Translates to: ECPSITQGTRTPQRK*VNSILSMLPIITCS
Trigger: AGAACAAGTTATTATAGGAAGCATGCTTAGGATGCTGTTGACTCATTTTCTTTGAGGAGTTCTTGTACCTTGTGTTATGCTGGGGCATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 90 bp CCTTTAACAGAAGCCGACCTCATGAACTGCAGGTTCTTTGAATACTaGGATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACA +
Preference number: 1 (lower is better)
Translates to: PLTEADLMNCRFFEY*DHSLQSLYLSLFYT
Trigger: TGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGAACCTGCAGTTCATGAGGTCGGCTTCTGTTAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204569.2
3UTR CAA 90 bp CTGCTCACAGATGTCCCTGCCAAGGACCCTTCCAGAATCCCCTCATaGCTCTGTGCTGTCCCATCTAAAGGCCTGCGGACTTGGACCAGG +
Preference number: 2 (lower is better)
Translates to: LLTDVPAKDPSRIPS*LCAVPSKGLRTWTR
Trigger: CCTGGTCCAAGTCCGCAGGCCTTTAGATGGGACAGCACAGAGCAATGAGGGGATTCTGGAAGGGTCCTTGGCAGGGACATCTGTGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp CCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCCAGGACAGCCAGGACCTTAGGCCCAAGATaGAGGAAAGACTCACATTCC +
Preference number: 2 (lower is better)
Translates to: PSTREAEAGGFLSSRTARTLGPR*RKDSHS
Trigger: GGAATGTGAGTCTTTCCTCCATCTTGGGCCTAAGGT...CCTGGCTGTCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp CCAGCCTGGGACTCAACCTGTCCACCCTCTTCTGTGATCAAGTCTTaGCAAGCATGTGTGAGCCAGCACTTCCATGGTAGATACAAGCCC +
Preference number: 2 (lower is better)
Translates to: PAWDSTCPPSSVIKS*QACVSQHFHGRYKP
Trigger: GGGCTTGTATCTACCATGGAAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAGGTTGAGTCCCAGGCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp TGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTTACCATTCTCCAGTGCCAAAGCACCTCACCTaGCCTCATGTGGCACCTTCA +
Preference number: 2 (lower is better)
Translates to: CPTCSLPSIHPAVYHSPVPKHLT*PHVAPS
Trigger: TGAAGGTGCCACATGAGGGCAGGTGAGGTGCTTTGG...CACTGGAGAATGGTAAACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp CTTATAGGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCAGGTCTGAGCTGCCATaGCTGGCTGGTTTGGTTTTT +
Preference number: 2 (lower is better)
Translates to: LIGEPDTLQFCHRLPPLCRSELP*LAGLVF
Trigger: AAAAACCAAACCAGCCAGGCATGGCAGCTCAGACCT...GCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACCTATAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR TCA 90 bp ACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACAGAGGGGGTGAGTTATaGGGCAGAGTCAGAGACTGC +
Preference number: 2 (lower is better)
Translates to: TVHCTSLLCFVQPLTEADRGGEL*GRVRDC
Trigger: GCAGTCTCTGACTCTGCCTCATAACTCACCCCCTCT...GTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp CAGTGGTTCTGGGAAATACCTCCCACCTACCATCTCGCCCTACTAACCATGCTGTCTGCTCACACCTCTTaGCATGCACTCTCTCCCTTT +
Preference number: 2 (lower is better)
Translates to: QWFWEIPPTYHLALLTMLSAHTS*HALSPF
Trigger: AAAGGGAGAGAGTGCATGGCAAGAGGTGTGAGCAGA...CAGCATGGTTAGTAGGGCGAGATGGTAGGTGGGAGGTATTTCCCAGAACCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTTCCAGGAGGGCTGCCTaGGAATTAAGACTGCCCCAG +
Preference number: 2 (lower is better)
Translates to: RTAGFSNSTTALILLTPLSRRAA*ELRLPQ
Trigger: CTGGGGCAGTCTTAATTCTCAGGCAGCCCTCCTGGA...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp GATATCAACTGGCTGGCATCAAACTACCCAGTCCATTTTGAGCCCTaGCTCCACCCCAGTGGCTATAAACACTACCATTGCCTTCCTGGT +
Preference number: 2 (lower is better)
Translates to: DINWLASNYPVHFEP*LHPSGYKHYHCLPG
Trigger: ACCAGGAAGGCAATGGTAGTGTTTATAGCCACTGGGGTGGAGCAAGGGCTCAAAATGGACTGGGTAGTTTGATGCCAGCCAGTTGATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp ACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACGACTACACTTGTGCCTaGATGGGGGTGAGTACCTTA +
Preference number: 2 (lower is better)
Translates to: TVHCTSLLCFVQPLTEADDYTCA*MGVSTL
Trigger: TAAGGTACTCACCCCCATTCAGGCACAAGTGTAGTC...GTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp GTGACAGCAACTATGTGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTGAATTGGCAGGTAGATaGTCTAAGGTCAGCCCTTGT +
Preference number: 2 (lower is better)
Translates to: VTATMCPTCSLPSIHPAVELAGR*SKVSPC
Trigger: ACAAGGGCTGACCTTAGACCATCTACCTGCCAATTC...AACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp TTGCTGTATTGGAGCATGCAACACAGGTCAGAGGAGGTGATCTTCTaGAGATTGGCACTTGTATCCCTCAGCCTGTGCAGCAAATGCACA +
Preference number: 2 (lower is better)
Translates to: LLYWSMQHRSEEVIF*RLALVSLSLCSKCT
Trigger: TGTGCATTTGCTGCACAGGCTGAGGGATACAAGTGCCAATCTCAAGAAGATCACCTCCTCTGACCTGTGTTGCATGCTCCAATACAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp CTATTTCCCAATGGAGCACAGCATGCTTTGCAGAAAAAGTGTCAGTaGGCAAAGATGGTAAGAGCTCTGGCAAGGTGGGATCCCCACATC +
Preference number: 2 (lower is better)
Translates to: LFPNGAQHALQKKCQ*AKMVRALARWDPHI
Trigger: GATGTGGGGATCCCACCTTGCCAGAGCTCTTACCATCTTTGCCAACTGACACTTTTTCTGCAAAGCATGCTGTGCTCCATTGGGAAATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp CTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAAGCATGTGTGAGCCAGCACTTGTGAATAATAAATGGTaGGACGCTCAGAGGCTGGCA +
Preference number: 2 (lower is better)
Translates to: LSTLFCDQVFASMCEPALVNNKW*DAQRLA
Trigger: TGCCAGCCTCTGAGCGTCGCACCATTTATTATTCAC...AAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp TCAGTTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAAGATACTTTACAGTTTTaGCACCGCCTTCCGCCGCTC +
Preference number: 2 (lower is better)
Translates to: SVNNLALVLSFYPMEFREDTLQF*HRLPPL
Trigger: GAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATC...TTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR CCA 90 bp TGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTTACCATTCTCCAGTGTTTATACAAGTGATATaGCTACGGAGGTCCGAGGAG +
Preference number: 2 (lower is better)
Translates to: CPTCSLPSIHPAVYHSPVFIQVI*LRRSEE
Trigger: CTCCTCGGACCTCCGTAGCCATATCACTTGTATAAA...CACTGGAGAATGGTAAACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp AGAGTAAAGATATCAACTGGCTGGCATCAAACTACCCAGTCCATTTaGAGCCCTTGCTCCACCCCAGTGGCTATAAACACTACCATTGCC +
Preference number: 2 (lower is better)
Translates to: RVKISTGWHQTTQSI*SPCSTPVAINTTIA
Trigger: GGCAATGGTAGTGTTTATAGCCACTGGGGTGGAGCAAGGGCTCAAAATGGACTGGGTAGTTTGATGCCAGCCAGTTGATATCTTTACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp CTTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTGAACCCGAAAAGGACTAGTATAGGTCTGAGCTaGCATGCCTGGCTGGTTTGG +
Preference number: 2 (lower is better)
Translates to: LAQKAFTCCIISLNPKRTSIGLS*HAWLVW
Trigger: CCAAACCAGCCAGGCATGGCAGCTCAGACCTATACT...AGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR CCA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTATGCAAGGAAGGACTTaGGTCTGCACCCTTCACAGA +
Preference number: 2 (lower is better)
Translates to: RTAGFSNSTTALILLTPLMQGRT*VCTLHR
Trigger: TCTGTGAAGGGTGCAGACCCAAGTCCTTCCTTGCAT...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp AAATCCCTTCATCCTTATCTGGGCATGGCAACAGCCCCTTTCTCATCAGTCACATCCTCTTCACTGCAATaGGGGCAATCTTTACGACAC +
Preference number: 2 (lower is better)
Translates to: KSLHPYLGMATAPFSSVTSSSLQ*GQSLRH
Trigger: GTGTCGTAAAGATTGCCCCCATTGCAGTGAAGAGGA...TGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp TTCAAGCCAGACAACCTGATGGTTCTAGAAGTCAGAGAAGAAATCTaGAGGGCCCAAGTGAATAATAAATGGTGCGACGCTCAGAGGCTG +
Preference number: 2 (lower is better)
Translates to: FKPDNLMVLEVREEI*RAQVNNKWCDAQRL
Trigger: CAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGCCCTCAAGATTTCTTCTCTGACTTCTAGAACCATCAGGTTGTCTGGCTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp CAAAACATAGGTTTTCACCTCCTGGACCTGAACAAAGTACTTGTTTaGAGCCTTGGTGTGCTTCATGAGCCCAGTGCTACTCCCAATTCC +
Preference number: 2 (lower is better)
Translates to: QNIGFHLLDLNKVLV*SLGVLHEPSATPNS
Trigger: GGAATTGGGAGTAGCACTGGGCTCATGAAGCACACCAAGGCTCAAAACAAGTACTTTGTTCAGGTCCAGGAGGTGAAAACCTATGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp GTCACCAGACTTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATaGAACCCGAAAAGGACTCTGTATAAAGTGCAGACCTCCTCAGTG +
Preference number: 2 (lower is better)
Translates to: VTRLAQKAFTCCIIS*NPKRTLYKVQTSSV
Trigger: CACTGAGGAGGTCTGCACTTTATACAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR TCA 90 bp AATCTGTTCTGCCAAGTCTGTGAGCAAAGGAGTAAGCACAACTCTGCCCTAAGCCAGAGTCTTACAGAGTaGAGAAGGCCACAAGAACAA +
Preference number: 2 (lower is better)
Translates to: NLFCQVCEQRSKHNSALSQSLTE*RRPQEQ
Trigger: TTGTTCTTGTGGCCTTCTTCACTCTGTAAGACTCTG...GCTTAGGGCAGAGTTGTGCTTACTCCTTTGCTCACAGACTTGGCAGAACAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp GTGACAGCAACTATGTGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTCTTAAAAGTAAATGCTaGCCCATGGCTGAAATCTGT +
Preference number: 2 (lower is better)
Translates to: VTATMCPTCSLPSIHPAVLKSKC*PMAEIC
Trigger: ACAGATTTCAGCCATGGGTCAGCATTTACTTTTAAG...AACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp TGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTTACCATTCTCCAGTGATAAATATTCCACTGTaGCATTTCCACAGGAACCAG +
Preference number: 2 (lower is better)
Translates to: CPTCSLPSIHPAVYHSPVINIPL*HFHRNQ
Trigger: CTGGTTCCTGTGGAAATGGCACAGTGGAATATTTAT...CACTGGAGAATGGTAAACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp CTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAAGCATGTGTGAGCCAGCACTTAAAGTTTGCAGCAACTaGGCAGGTTTACAACATGGT +
Preference number: 2 (lower is better)
Translates to: LSTLFCDQVFASMCEPALKVCSN*AGLQHG
Trigger: ACCATGTTGTAAACCTGCCCAGTTGCTGCAAACTTT...AAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp TACCCCATCTCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTGGGCATGGTGCAGCAAATGCACATaGATTCTACAGCATGTCACC +
Preference number: 2 (lower is better)
Translates to: YPISTTTQANPFILIWAWCSKCT*ILQHVT
Trigger: GGTGACATGCTGTAGAATTCATGTGCATTTGCTGCA...CCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGAGATGGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp ATAACAGCCAATTTCCTGACATCTCTGCTTATAGGTGAGCCGGATACTTTACAGTGCACCACAGACTCCTaGCAGCGACATCTTTACCTT +
Preference number: 2 (lower is better)
Translates to: ITANFLTSLLIGEPDTLQCTTDS*QRHLYL
Trigger: AAGGTAAAGATGTCGCTGTCAGGAGTCTGTGGTGCA...CTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGCTGTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR TCA 90 bp GCATCAGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGGTTCTTTGAATACTaGGATCACAGCTTACAGTCA +
Preference number: 2 (lower is better)
Translates to: ASAGTGLQCTALLCSALYRFFEY*DHSLQS
Trigger: TGACTGTAAGCTGTGATCTCAGTATTCAAAGAACCT...GTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204569.2
3UTR-3UTR CCA 90 bp CACATCCTTCCCCCACCTCGATCAGAACAGCAGAGTCAGCATTCACAGAGTACTTTAAAACAGACATCGTaGCTTTGGACAAAGTATTGC +
Preference number: 2 (lower is better)
Translates to: HILPPPRSEQQSQHSQSTLKQTS*LWTKYC
Trigger: GCAATACTTTGTCCAAAGCCACGATGTCTGTTTTAA...AGTACTCTGTGAATGCTGACTCTGCTGTTCTGATCGAGGTGGGGGAAGGATGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp CTTTCTTCCTATTTCCCAATGGAGCACAGCATGCTTTGCAGAAAAAGTGTCAGTATAGCCTCTGTTCCCTaGTCCCAGAAAAAGGACCTG +
Preference number: 2 (lower is better)
Translates to: LSSYFPMEHSMLCRKSVSIASVP*SQKKDL
Trigger: CAGGTCCTTTTTCTGGGACCAGGGAACAGAGGCTAT...ACTGACACTTTTTCTGCAAAGCATGCTGTGCTCCATTGGGAAATAGGAAGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp GGGATTACAAACAATCTCAGGAGCTACTTAACCCAACCCCTTACTTaGCCATACTATGCACCAAACCTCATCAGCATGAGGTATGTTGGA +
Preference number: 2 (lower is better)
Translates to: GITNNLRSYLTQPLT*PYYAPNLISMRYVG
Trigger: TCCAACATACCTCATGCTGATGAGGTTTGGTGCATAGTATGGCAAAGTAAGGGGTTGGGTTAAGTAGCTCCTGAGATTGTTTGTAATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp AATCTGTTCTGCCAAGTCTGTGAGCAAAGGAGTAAGCACAACTCTGCCCTAAGCGAACAAATGACTGTGTaGTACACATCTGAGCAGTAT +
Preference number: 2 (lower is better)
Translates to: NLFCQVCEQRSKHNSALSEQMTV*YTSEQY
Trigger: ATACTGCTCAGATGTGTATCACACAGTCATTTGTTC...GCTTAGGGCAGAGTTGTGCTTACTCCTTTGCTCACAGACTTGGCAGAACAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp ACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACAGAACGAGAATAAAGTaGGATAAACGTGCTGAAAAC +
Preference number: 2 (lower is better)
Translates to: TVHCTSLLCFVQPLTEADRTRIK*DKRAEN
Trigger: GTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCT...GTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000204569.2
3UTR-3UTR TCA 90 bp AAATCCCTTCATCCTTATCTGGGCATGGCAACAGCCCCTTTCTCATCAGTCACACTTACCTTTGAATACTaGGATCACAGCTTACAGTCA +
Preference number: 2 (lower is better)
Translates to: KSLHPYLGMATAPFSSVTLTFEY*DHSLQS
Trigger: TGACTGTAAGCTGTGATCTCAGTATTCAAAGGTAAG...TGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTAGCAGATTTGGTTTCTaGAGACTCAGTAACTTGCTG +
Preference number: 2 (lower is better)
Translates to: RTAGFSNSTTALILLTPLSRFGF*RLSNLL
Trigger: CAGCAAGTTACTGAGTCTGCAGAAACCAAATCTGCT...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp TACCCCATCTCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTGGGCATGGTGCACTTCTCTGCTCTaGTTTGTACAGCCTTTAACA +
Preference number: 2 (lower is better)
Translates to: YPISTTTQANPFILIWAWCTSLL*FVQPLT
Trigger: TGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCA...CCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGAGATGGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp CTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAAGCATGTGTGAGCCAGCACTTGGCAGGTTTACAACATaGTTAGTAACTTCCAACAAA +
Preference number: 2 (lower is better)
Translates to: LSTLFCDQVFASMCEPALGRFTT*LVTSNK
Trigger: TTTGTTGGAAGTTACTAACCATGTTGTAAACCTGCC...AAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp AATCTGTTCTGCCAAGTCTGTGAGCAAAGGAGTAAGCACAACTCTGCCCTAAGCTGCTGCTTTAGATTCTaGTATCAAAGAAGAGGAAAG +
Preference number: 2 (lower is better)
Translates to: NLFCQVCEQRSKHNSALSCCFRF*YQRRGK
Trigger: CTTTCCTCTTCTTTGATATCAGAATCTAAAGCAGCA...GCTTAGGGCAGAGTTGTGCTTACTCCTTTGCTCACAGACTTGGCAGAACAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTAAGGAAAGGAACAAATaGCTGTGTGATACACATCTG +
Preference number: 2 (lower is better)
Translates to: RTAGFSNSTTALILLTPLKERNK*LCDTHL
Trigger: CAGATGTGTATCACACAGTCATTTGTTCCTTTCCTT...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CCA 90 bp CTTTCTTCCTATTTCCCAATGGAGCACAGCATGCTTTGCAGAAAAAGTGTCAGTCAAATTCAAGTGCCCTaGAGTAAGCACATATCACTC +
Preference number: 2 (lower is better)
Translates to: LSSYFPMEHSMLCRKSVSQIQVP*SKHISL
Trigger: GAGTGATATGTGCTTACTCCAGGGCACTTGAATTTG...ACTGACACTTTTTCTGCAAAGCATGCTGTGCTCCATTGGGAAATAGGAAGAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp AGATATCCGAGTTCCACAGAAATGAGCTGGAGTGAGAGAAATGCTTaGGCCCAGATTCTCATATGTTTTCTATTCTGTATCTCTAGCTGT +
Preference number: 2 (lower is better)
Translates to: RYPSSTEMSWSERNA*AQILICFLFCISSC
Trigger: ACAGCTAGAGATACAGAATAGAAAACATATGAGAATCTGGGCCAAAGCATTTCTCTCACTCCAGCTCATTTCTGTGGAACTCGGATATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp ATTTGTAGTTCCAGGCATTGGTCTACCATAATCAGAACGACATTATaGAATGTAATGTGTCTGTGGTCACGTTACCCACCACCTAGAGAA +
Preference number: 2 (lower is better)
Translates to: ICSSRHWSTIIRTTL*NVMCLWSRYPPPRE
Trigger: TTCTCTAGGTGGTGGGTAACGTGACCACAGACACATTACATTCAATAATGTCGTTCTGATTATGGTAGACCAATGCCTGGAACTACAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp ACAATACCAATTCTAGCAATGTTCCTTCCTCATTCCCAATCTGGCTTCTTAAATGTCCACCCTCTTCTGTaGTCAAGTCTTTGCAAGCAT +
Preference number: 2 (lower is better)
Translates to: TIPILAMFLPHSQSGFLNVHPLL*SSLCKH
Trigger: ATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGAC...ATTTAAGAAGCCAGATTGGGAATGAGGAAGGAACATTGCTAGAATTGGTATTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp TTTCTAAATGAAAGATGCTTCTCAACCTGGCTAAAAACTGCCCTGAGGAAATTACTACCAATCAGTGACTaGATCAGGAACCAGGCAGTA +
Preference number: 2 (lower is better)
Translates to: FLNERCFSTWLKTALRKLLPISD*IRNQAV
Trigger: TACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAG...TAATTTCCTCAGGGCAGTTTTTAGCCAGGTTGAGAAGCATCTTTCATTTAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp AAATCATTTTTAAGAATAGTGACTTGTGTCTGCAGAGGACTACACTaGTGCCTGAATGGGGGTGAGTACCTTAATGAAACCATTACCTTC +
Preference number: 2 (lower is better)
Translates to: KSFLRIVTCVCRGLH*CLNGGEYLNETITF
Trigger: GAAGGTAATGGTTTCATTAAGGTACTCACCCCCATTCAGGCACAAGTGTAGTCCTCTGCAGACACAAGTCACTATTCTTAAAAATGATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp CAAGCAAAACCATTAAGTATTTCATTCCCAGAGGGTAACAGTTTGAGGGATTACTTGGTAGGAACCATTTaGAATGACGGCCATCATGTT +
Preference number: 2 (lower is better)
Translates to: QAKPLSISFPEGNSLRDYLVGTI*NDGHHV
Trigger: AACATGATGGCCGTCATTTCAAATGGTTCCTACCAA...GTAATCCCTCAAACTGTTACCCTCTGGGAATGAAATACTTAATGGTTTTGCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp TCTCTCAAGCAGCATCCACTAAGTTGCACTTCATTATATACAGTTTaGGTAACAGCACAAGACTATAAATATTCCACTGTGCCATTTCCA +
Preference number: 2 (lower is better)
Translates to: SLKQHPLSCTSLYTV*VTAQDYKYSTVPFP
Trigger: TGGAAATGGCACAGTGGAATATTTATAGTCTTGTGCTGTTACCAAAACTGTATATAATGAAGTGCAACTTAGTGGATGCTGCTTGAGAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp ACAATACCAATTCTAGCAATGTTCCTTCCTCATTCCCAATCTGGCTTCTTAAATCAAATGTTGGATAAGTaGGATGAAGAACCTACCAAC +
Preference number: 2 (lower is better)
Translates to: TIPILAMFLPHSQSGFLNQMLDK*DEEPTN
Trigger: GTTGGTAGGTTCTTCATCTCACTTATCCAACATTTG...ATTTAAGAAGCCAGATTGGGAATGAGGAAGGAACATTGCTAGAATTGGTATTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 90 bp TTATCCGATTCCTTAAGCAGATTTGGTTTCTGCAGACTCAGTAACTaGCTGAAGTTGATTCTGCAAATAATTAGCTTAACTCAGCCAATT +
Preference number: 2 (lower is better)
Translates to: LSDSLSRFGFCRLSN*LKLILQIISLTQPI
Trigger: AATTGGCTGAGTTAAGCTAATTATTTGCAGAATCAACTTCAGCAAGTTACTGAGTCTGCAGAAACCAAATCTGCTTAAGGAATCGGATAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR TCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAAATTATTTCCAGGAATaGGGTACCGTTTCACAGAAC +
Preference number: 2 (lower is better)
Translates to: QYSVLQQSSLFVISVETLNYFQE*GTVSQN
Trigger: GTTCTGTGAAACGGTACCTCATTCCTGGAAATAATT...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR CAA 90 bp AAGAAAATGAGTCAACAGCATCCTAAGCATGCTTCCTATAATAACTaGTTCTTTACCAACAAACACACAAGCCTTGAAAACTTGATTCTG +
Preference number: 2 (lower is better)
Translates to: KKMSQQHPKHASYNN*FFTNKHTSLENLIL
Trigger: CAGAATCAAGTTTTCAAGGCTTGTGTGTTTGTTGGTAAAGAACAAGTTATTATAGGAAGCATGCTTAGGATGCTGTTGACTCATTTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR GCA 90 bp ATTAACTCACAGCTAAAGCCCAGAGTAAATCTTTCAGTAACCACATACCTTTTTTTTGATGTGTATGCATaGATACCTACATTAAGAACC +
Preference number: 2 (lower is better)
Translates to: INSQLKPRVNLSVTTYLFFDVYA*IPTLRT
Trigger: GGTTCTTAATGTAGGTATGCATGCATACACATCAAA...AAAAAGGTATGTGGTTACTGAAAGATTTACTCTGGGCTTTAGCTGTGAGTTAAT
34% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TCAACACAAAGGAGCCGCAGTGTGGGTGCTGCTCGCTaGGCTCGGAGCAGCAGGGTCCCTTTGGATGAAGGC +
Preference number: 3 (lower is better)
Translates to: STQRSRSVGAAR*ARSSRVPLDEG
Trigger: GCCTTCATCCAAAGGGACCCTGCTGCTCCGAGCCCAGCGAGCAGCACCCACACTGCGGCTCCTTTGTGTTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GATCCTACAAAGCAGAGCCCTAGCTGGGCGTGGTGGTaGCCGCCTTTAATCCCAGCACTCGGGAGGCAAAGG +
Preference number: 3 (lower is better)
Translates to: DPTKQSPSWAWW*PPLIPALGRQR
Trigger: CCTTTGCCTCCCGAGTGCTGGGATTAAAGGCGGGCACCACCACGCCCAGCTAGGGCTCTGCTTTGTAGGATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTaGCAAGCAGACCCCACTCTCAGCCACAGCTGCACC +
Preference number: 3 (lower is better)
Translates to: DTLQFCHRLPPL*QADPTLSHSCT
Trigger: GGTGCAGCTGTGGCTGAGAGTGGGGTCTGCTTGGCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR CCA 72 bp ATGACAGATCCTACAAAGCAGAGCCCTAGCTGGGCGTaGTGGTGCCCGCCTTTAATCCCAGCACTCGGGAGG +
Preference number: 3 (lower is better)
Translates to: MTDPTKQSPSWA*WCPPLIPALGR
Trigger: CCTCCCGAGTGCTGGGATTAAAGGCGGGCACCACCACGCCCAGCTAGGGCTCTGCTTTGTAGGATCTGTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AGAGTCCAACATATTCAACACAAAGGAGCCGCAGTGTaGGTGCTGCTCGCTGGGCTCGGAGCAGCAGGGTCC +
Preference number: 3 (lower is better)
Translates to: RVQHIQHKGAAV*VLLAGLGAAGS
Trigger: GGACCCTGCTGCTCCGAGCCCAGCGAGCAGCACCCACACTGCGGCTCCTTTGTGTTGAATATGTTGGACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TGGAGCCATTATGAGGCACAAGAGATGTGGCGCTCCTaGAGCCTTAAGGGGCACAGGTTGCCAGCCACACCT +
Preference number: 3 (lower is better)
Translates to: WSHYEAQEMWRS*SLKGHRLPATP
Trigger: AGGTGTGGCTGGCAACCTGTGCCCCTTAAGGCTGCAGGAGCGCCACATCTCTTGTGCCTCATAATGGCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AACATATTCAACACAAAGGAGCCGCAGTGTGGGTGCTaGTCGCTGGGCTCGGAGCAGCAGGGTCCCTTTGGA +
Preference number: 3 (lower is better)
Translates to: NIFNTKEPQCGC*SLGSEQQGPFG
Trigger: TCCAAAGGGACCCTGCTGCTCCGAGCCCAGCGAGCAGCACCCACACTGCGGCTCCTTTGTGTTGAATATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TCCAACATATTCAACACAAAGGAGCCGCAGTGTGGGTaGTGCTCGCTGGGCTCGGAGCAGCAGGGTCCCTTT +
Preference number: 3 (lower is better)
Translates to: SNIFNTKEPQCG*CSLGSEQQGPF
Trigger: AAAGGGACCCTGCTGCTCCGAGCCCAGCGAGCAGCACCCACACTGCGGCTCCTTTGTGTTGAATATGTTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp ATCCCAGCACTCGGGAGGCAAAGGCAGGCGAATTTCTaGGTTCAAGGGCAGCCTGGTCTACAAAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: IPALGRQRQANF*VQGQPGLQSEF
Trigger: GAACTCACTTTGTAGACCAGGCTGCCCTTGAACTCAGAAATTCGCCTGCCTTTGCCTCCCGAGTGCTGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GACCCCACTCTCAGCCACAGCTGCACCACAGACTCCTaGCAGCGACATCTTTACCTTCTCTGTGTCTCAGAA +
Preference number: 3 (lower is better)
Translates to: DPTLSHSCTTDS*QRHLYLLCVSE
Trigger: TTCTGAGACACAGAGAAGGTAAAGATGTCGCTGTCAGGAGTCTGTGGTGCAGCTGTGGCTGAGAGTGGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR GCA 72 bp AGAGCTAGAAATGGACCACAGAAAGTGAGAGGGCTCTaGAGTGCTCTGCGTGCCATCCAGACCTCTCATTCC +
Preference number: 3 (lower is better)
Translates to: RARNGPQKVRGL*SALRAIQTSHS
Trigger: GGAATGAGAGGTCTGGATGGCACGCAGAGCACTGCAGAGCCCTCTCACTTTCTGTGGTCCATTTCTAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TGTGGTCACGTTACCCACCACCTAGAGAATAATCTGTaGCCCTCAGCCTGTCACCCAAGCAGCCCCAATCTA +
Preference number: 3 (lower is better)
Translates to: CGHVTHHLENNL*PSACHPSSPNL
Trigger: TAGATTGGGGCTGCTTGGGTGACAGGCTGAGGGGCACAGATTATTCTCTAGGTGGTGGGTAACGTGACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp GGAAATCTATGGAGCCATTATGAGGCACAAGAGATGTaGCGCTCCTGCAGCCTTAAGGGGCACAGGTTGCCA +
Preference number: 3 (lower is better)
Translates to: GNLWSHYEAQEM*RSCSLKGHRLP
Trigger: TGGCAACCTGTGCCCCTTAAGGCTGCAGGAGCGCCACATCTCTTGTGCCTCATAATGGCTCCATAGATTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AGGGCACAGCACCCAGGGATCTTCAAACAGTGGTTCTaGGAAATACCTCCCACCTACCATCTCGCCCTACTA +
Preference number: 3 (lower is better)
Translates to: RAQHPGIFKQWF*EIPPTYHLALL
Trigger: TAGTAGGGCGAGATGGTAGGTGGGAGGTATTTCCCAGAACCACTGTTTGAAGATCCCTGGGTGCTGTGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TCACAAAGGGCACAGCACCCAGGGATCTTCAAACAGTaGTTCTGGGAAATACCTCCCACCTACCATCTCGCC +
Preference number: 3 (lower is better)
Translates to: SQRAQHPGIFKQ*FWEIPPTYHLA
Trigger: GGCGAGATGGTAGGTGGGAGGTATTTCCCAGAACCACTGTTTGAAGATCCCTGGGTGCTGTGCCCTTTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp ACCACAGAAAGTGAGAGGGCTCTGCAGTGCTCTGCGTaGCATCCAGACCTCTCATTCCTTCACACTTTGATG +
Preference number: 3 (lower is better)
Translates to: TTESERALQCSA*HPDLSFLHTLM
Trigger: CATCAAAGTGTGAAGGAATGAGAGGTCTGGATGGCACGCAGAGCACTGCAGAGCCCTCTCACTTTCTGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TGCTCACACCTCTTGCCATGCACTCTCTCCCTTTCCTaGACCTTACACATACATGGCCATCCTCCTAAGCTG +
Preference number: 3 (lower is better)
Translates to: CSHLLPCTLSLS*TLHIHGHPPKL
Trigger: CAGCTTAGGAGGATGGCCATGTATGTGTAAGGTGCAGGAAAGGGAGAGAGTGCATGGCAAGAGGTGTGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GGCTGGCATCAAACTACCCAGTCCATTTTGAGCCCTTaGTCCACCCCAGTGGCTATAAACACTACCATTGCC +
Preference number: 3 (lower is better)
Translates to: GWHQTTQSILSP*STPVAINTTIA
Trigger: GGCAATGGTAGTGTTTATAGCCACTGGGGTGGAGCAAGGGCTCAAAATGGACTGGGTAGTTTGATGCCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp CCAAATAAGAGAATATTCCTGAGCCGAATGTGGTGGTaGACACCCTGTAATCCCAGCACATGGGAGGCAGGG +
Preference number: 3 (lower is better)
Translates to: PNKRIFLSRMWW*TPCNPSTWEAG
Trigger: CCCTGCCTCCCATGTGCTGGGATTACAGGGTGTGCACCACCACATTCGGCTCAGGAATATTCTCTTATTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TGTCAGTTGGCAAAGATGGTAAGAGCTCTGGCAAGGTaGGATCCCCACATCTTCCTGCCCCTAAGCAATTGG +
Preference number: 3 (lower is better)
Translates to: CQLAKMVRALAR*DPHIFLPLSNW
Trigger: CCAATTGCTTAGGGGCAGGAAGATGTGGGGATCCCACCTTGCCAGAGCTCTTACCATCTTTGCCAACTGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TTGCTCTGTGCTGTCCCATCTAAAGGCCTGCGGACTTaGACCAGGGCTACTGCAATTGTGACTCAGCTCTAT +
Preference number: 3 (lower is better)
Translates to: LLCAVPSKGLRT*TRATAIVTQLY
Trigger: ATAGAGCTGAGTCACAATTGCAGTAGCCCTGGTCCAAGTCCGCAGGCCTTTAGATGGGACAGCACAGAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp AGAACAGCACAGCTTCCTCCTCCATCAGAGAGGGGGTaGGTTATGAGGCAGAGTCAGAGACTGCAAAAGTCT +
Preference number: 3 (lower is better)
Translates to: RTAQLPPPSERG*VMRQSQRLQKS
Trigger: AGACTTTTGCAGTCTCTGACTCTGCCTCATAACTCACCCCCTCTCTGATGGAGGAGGAAGCTGTGCTGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GCAGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTaGTTCTGCTCACACCTCTTGCCATGCACTCTCTCC +
Preference number: 3 (lower is better)
Translates to: AEQLALAIPLQL*FCSHLLPCTLS
Trigger: GGAGAGAGTGCATGGCAAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AAGCACAACTCTGCCCTAAGCAGGCCATGCACCTGTTaGTTAACCAGCATAGTCTCACTTCCCTCACATCCT +
Preference number: 3 (lower is better)
Translates to: KHNSALSRPCTC*LTSIVSLPSHP
Trigger: AGGATGTGAGGGAAGTGAGACTATGCTGGTTAAGCAACAGGTGCATGGCCTGCTTAGGGCAGAGTTGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp CAAAGGAGTAAGCACAACTCTGCCCTAAGCAGGCCATaGACCTGTTGCTTAACCAGCATAGTCTCACTTCCC +
Preference number: 3 (lower is better)
Translates to: QRSKHNSALSRP*TCCLTSIVSLP
Trigger: GGGAAGTGAGACTATGCTGGTTAAGCAACAGGTGCATGGCCTGCTTAGGGCAGAGTTGTGCTTACTCCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp ACACATGCAGGCTGCTGCTTCAAGCACGCTGATACTTaGAAAGTCCAAAGTCTACATGTCACCACAGGCCCA +
Preference number: 3 (lower is better)
Translates to: THAGCCFKHADT*KVQSLHVTTGP
Trigger: TGGGCCTGTGGTGACATGTAGACTTTGGACTTTCCAAGTATCAGCGTGCTTGAAGCAGCAGCCTGCATGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp CTACGTGATGGCACCAGGCAGCCTGAGCATAAAAGATaGATGTTAGAGAAGGGGCTTCCTGTATCTGGTAGC +
Preference number: 3 (lower is better)
Translates to: LRDGTRQPEHKR*MLEKGLPVSGS
Trigger: GCTACCAGATACAGGAAGCCCCTTCTCTAACATTCATCTTTTATGCTCAGGCTGCCTGGTGCCATCACGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp CACTTCTTACCTTCTGTTCTTCCAAAGCACCTCACCTaGCCTCATGTGGCACCTTCACATCAAAATGCCCAC +
Preference number: 3 (lower is better)
Translates to: HFLPSVLPKHLT*PHVAPSHQNAH
Trigger: GTGGGCATTTTGATGTGAAGGTGCCACATGAGGGCAGGTGAGGTGCTTTGGAAGAACAGAAGGTAAGAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TTGGACCAGGGCTACTGCAATTGTGACTCAGCTCTATaGACTTCCTATGCTGTAAGTCAACTCACCCACCTG +
Preference number: 3 (lower is better)
Translates to: LDQGYCNCDSAL*TSYAVSQLTHL
Trigger: CAGGTGGGTGAGTTGACTTACAGCATAGGAAGTGCATAGAGCTGAGTCACAATTGCAGTAGCCCTGGTCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TATAGAGCAAGGACCCTAGACAGGCTGAGGATGCTCTaGCCCAGTCTGGCAGTTTCTACAACTAAGTATCCT +
Preference number: 3 (lower is better)
Translates to: YRARTLDRLRML*PSLAVSTTKYP
Trigger: AGGATACTTAGTTGTAGAAACTGCCAGACTGGGGCAGAGCATCCTCAGCCTGTCTAGGGTCCTTGCTCTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AGAGAAGAAATCTTGAGGGCCCAAGTGAATAATAAATaGTGCGACGCTCAGAGGCTGGCAATAGGGGCTGTC +
Preference number: 3 (lower is better)
Translates to: REEILRAQVNNK*CDAQRLAIGAV
Trigger: GACAGCCCCTATTGCCAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGCCCTCAAGATTTCTTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp CTACCAAATAAGAGAATATTCCTGAGCCGAATGTGGTaGTGCACACCCTGTAATCCCAGCACATGGGAGGCA +
Preference number: 3 (lower is better)
Translates to: LPNKRIFLSRMW*CTPCNPSTWEA
Trigger: TGCCTCCCATGTGCTGGGATTACAGGGTGTGCACCACCACATTCGGCTCAGGAATATTCTCTTATTTGGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TGGCTACCAAATAAGAGAATATTCCTGAGCCGAATGTaGTGGTGCACACCCTGTAATCCCAGCACATGGGAG +
Preference number: 3 (lower is better)
Translates to: WLPNKRIFLSRM*WCTPCNPSTWE
Trigger: CTCCCATGTGCTGGGATTACAGGGTGTGCACCACCACATTCGGCTCAGGAATATTCTCTTATTTGGTAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CAA 90 bp CACATCCTTCCCCCACCTCGATCAGAACAGCAGAGTCAGCATTCACAGAGTACTGCCTTAGGGGTCACATaGCTCTTAAGACCAAGATAT +
Preference number: 3 (lower is better)
Translates to: HILPPPRSEQQSQHSQSTALGVT*LLRPRY
Trigger: ATATCTTGGTCTTAAGAGCAATGTGACCCCTAAGGC...AGTACTCTGTGAATGCTGACTCTGCTGTTCTGATCGAGGTGGGGGAAGGATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CAA 90 bp GTGACAGCAACTATGTGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTCCTGGTCCTTTGATCTaGTTTCCAAGTGATGTAAGC +
Preference number: 3 (lower is better)
Translates to: VTATMCPTCSLPSIHPAVPGPLI*FPSDVS
Trigger: GCTTACATCACTTGGAAACAAGATCAAAGGACCAGG...AACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp CCTGGAGTAAGCACATATCACTCAGCTACCAATCAGTaGCTGCATCAGGAACCAGGCAGTACTCTGTGTTAC +
Preference number: 3 (lower is better)
Translates to: PGVSTYHSATNQ*LHQEPGSTLCY
Trigger: GTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAGTGATATGTGCTTACTCCAGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR TCA 72 bp ACTATTTCTTTAGAGCTAGAAATGGACCACAGAAAGTaGGAGGGCTCTGCAGTGCTCTGCGTGCCATCCAGA +
Preference number: 3 (lower is better)
Translates to: TISLELEMDHRK*EGSAVLCVPSR
Trigger: TCTGGATGGCACGCAGAGCACTGCAGAGCCCTCTCACTTTCTGTGGTCCATTTCTAGCTCTAAAGAAATAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp CCTGCACCTTACACATACATGGCCATCCTCCTAAGCTaGAAAACTTGTGACATTCCCAACACTGAGCAGAGC +
Preference number: 3 (lower is better)
Translates to: PAPYTYMAILLS*KTCDIPNTEQS
Trigger: GCTCTGCTCAGTGTTGGGAATGTCACAAGTTTTTCAGCTTAGGAGGATGGCCATGTATGTGTAAGGTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp ATAGTCCACACATGCAGGCTGCTGCTTCAAGCACGCTaGTACTTGGAAAGTCCAAAGTCTACATGTCACCAC +
Preference number: 3 (lower is better)
Translates to: IVHTCRLLLQAR*YLESPKSTCHH
Trigger: GTGGTGACATGTAGACTTTGGACTTTCCAAGTATCAGCGTGCTTGAAGCAGCAGCCTGCATGTGTGGACTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TGTATAAAGTGCAGACCTCCTCAGTGGCAGCCTGCATaGGTTTCTACCATTGCCCAGATTAAGAGAGAGAGC +
Preference number: 3 (lower is better)
Translates to: CIKCRPPQWQPA*VSTIAQIKRES
Trigger: GCTCTCTCTCTTAATCTGGGCAATGGTAGAAACTCATGCAGGCTGCCACTGAGGAGGTCTGCACTTTATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR GCA 72 bp GAAGAAATCTTGAGGGCCCAAGTGAATAATAAATGGTaGGACGCTCAGAGGCTGGCAATAGGGGCTGTCAAT +
Preference number: 3 (lower is better)
Translates to: EEILRAQVNNKW*DAQRLAIGAVN
Trigger: ATTGACAGCCCCTATTGCCAGCCTCTGAGCGTCGCACCATTTATTATTCACTTGGGCCCTCAAGATTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AAAAAGGACCTGGCATCAGCAGGAACAGGATTACAGTaGACTGCACTTCTCTGCTCTGCTTTGTACAGCCTT +
Preference number: 3 (lower is better)
Translates to: KKDLASAGTGLQ*TALLCSALYSL
Trigger: AAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTGATGCCAGGTCCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000204569.2
3UTR GCA 72 bp AGTCAACTCACCCACCTGCGTCTTCTCCCAGTGGTCTaGAAAACTGAAAACAGGTCTATTAGGCATCCTGAA +
Preference number: 3 (lower is better)
Translates to: SQLTHLRLLPVV*KTENRSIRHPE
Trigger: TTCAGGATGCCTAATAGACCTGTTTTCAGTTTTGCAGACCACTGGGAGAAGACGCAGGTGGGTGAGTTGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GATCTCCTGGCTGGGGGTCACCTCAATGTGAGGAACTaGATTAAAGAGACAGCAGTATTAGGAAGGTTGAGA +
Preference number: 3 (lower is better)
Translates to: DLLAGGHLNVRN*IKETAVLGRLR
Trigger: TCTCAACCTTCCTAATACTGCTGTCTCTTTAATGCAGTTCCTCACATTGAGGTGACCCCCAGCCAGGAGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp ACAAGAACCAAGTTCCTTGGCCAGAGTGGAAAGGTATaGTCAGCAAGGAAGGGTAGAGCATATCAACCACTC +
Preference number: 3 (lower is better)
Translates to: TRTKFLGQSGKV*SARKGRAYQPL
Trigger: GAGTGGTTGATATGCTCTACCCTTCCTTGCTGAGCATACCTTTCCACTCTGGCCAAGGAACTTGGTTCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AGCTTTCCAAACATGGTGAGAATGCAAGGAAGGACTTaGGTCTGCACCCTTCACAGACCAGCACAATGTTAC +
Preference number: 3 (lower is better)
Translates to: SFPNMVRMQGRT*VCTLHRPAQCY
Trigger: GTAACATTGTGCTGGTCTGTGAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AATCTATGTTTCCACATAACTCACCTCCTACCAGCCTaGGACTCAACCTGTCCACCCTCTTCTGTGATCAAG +
Preference number: 3 (lower is better)
Translates to: NLCFHITHLLPA*DSTCPPSSVIK
Trigger: CTTGATCACAGAAGAGGGTGGACAGGTTGAGTCCCAGGCTGGTAGGAGGTGAGTTATGTGGAAACATAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp CCAGTCCTGTCACAGGTGATCACAATGGACATCCTGTaGCTTTTGACAGCTTCTCATTGCATAGCTAAGGCT +
Preference number: 3 (lower is better)
Translates to: PVLSQVITMDIL*LLTASHCIAKA
Trigger: AGCCTTAGCTATGCAATGAGAAGCTGTCAAAAGCCACAGGATGTCCATTGTGATCACCTGTGACAGGACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp GGCATTACAAAGTGCAGCAGCCAAACAAGGAGTCTATaGCAGAGTCCAACATATTCAACACAAAGGAGCCGC +
Preference number: 3 (lower is better)
Translates to: GITKCSSQTRSL*QSPTYSTQRSR
Trigger: GCGGCTCCTTTGTGTTGAATATGTTGGACTCTGCCATAGACTCCTTGTTTGGCTGCTGCACTTTGTAATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CAA 90 bp CAGTGGTTCTGGGAAATACCTCCCACCTACCATCTCGCCCTACTAACCATGCTGTTTTTAAATGGCTTCTaGCTGTTGCTGTATTGGAGC +
Preference number: 3 (lower is better)
Translates to: QWFWEIPPTYHLALLTMLFLNGF*LLLYWS
Trigger: GCTCCAATACAGCAACAGCAAGAAGCCATTTAAAAA...CAGCATGGTTAGTAGGGCGAGATGGTAGGTGGGAGGTATTTCCCAGAACCACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TATCCACAGAGCCTGCAGCTCTCAAGTAATGTTCACTaGACCTTAGGCCCAAGATGGAGGAAAGACTCACAT +
Preference number: 3 (lower is better)
Translates to: YPQSLQLSSNVH*TLGPRWRKDSH
Trigger: ATGTGAGTCTTTCCTCCATCTTGGGCCTAAGGTTCAGTGAACATTACTTGAGAGCTGCAGGCTCTGTGGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GATCCCCACATCTTCCTGCCCCTAAGCAATTGGTTATaGAATTGGGAAGTGGCCTGTAAACAACATGGTGAG +
Preference number: 3 (lower is better)
Translates to: DPHIFLPLSNWL*NWEVACKQHGE
Trigger: CTCACCATGTTGTTTACAGGCCACTTCCCAATTTCATAACCAATTGCTTAGGGGCAGGAAGATGTGGGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp AGGTGCTTTCATGCTACAGTGGCAGAGTTTAGAATGTaGCAGCAACTATGTGCCCTACATGCTCACTCCCAT +
Preference number: 3 (lower is better)
Translates to: RCFHATVAEFRM*QQLCALHAHSH
Trigger: ATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCACATTCTAAACTCTGCCACTGTAGCATGAAAGCACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp CATGCACCACCAAAGGCAGCTCATAGCTTCAGCATATaGTATCACATCCCACAGTACACTTCTTACCTTCTG +
Preference number: 3 (lower is better)
Translates to: HAPPKAAHSFSI*YHIPQYTSYLL
Trigger: CAGAAGGTAAGAAGTGTACTGTGGGATGTGATAGCATATGCTGAAGCTATGAGCTGCCTTTGGTGGTGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AACATGTCTCCTAGGCACATCACCTTGAAGGATGGCTaGAGATCACAAAAGCTCACTGAAAGCAAGCAGTTG +
Preference number: 3 (lower is better)
Translates to: NMSPRHITLKDG*RSQKLTESKQL
Trigger: CAACTGCTTGCTTTCAGTGAGCTTTTGTGATCTGCAGCCATCCTTCAAGGTGATGTGCCTAGGAGACATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GGTCTAGTCACCAGACTTGCTCAGAAAGCCTTCACTTaGTGCATTATCTCATTGAACCCGAAAAGGACTCTG +
Preference number: 3 (lower is better)
Translates to: GLVTRLAQKAFT*CIISLNPKRTL
Trigger: CAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGACTAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR CCA 72 bp CAAAGAGAAGATGTGAACCATTCCTCTTCACTGCAATaGGGGCAATCTTTACGACACCCCTTTGTGAGGCAA +
Preference number: 3 (lower is better)
Translates to: QREDVNHSSSLQ*GQSLRHPFVRQ
Trigger: TTGCCTCACAAAGGGGTGTCGTAAAGATTGCCCCCATTGCAGTGAAGAGGAATGGTTCACATCTTCTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp ACAACTCAAGCAAATCCCTTCATCCTTATCTGGGCATaGCAACAGCCCCTTTCTCATCAGTCACAACAAGGT +
Preference number: 3 (lower is better)
Translates to: TTQANPFILIWA*QQPLSHQSQQG
Trigger: ACCTTGTTGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATaGAGTTTCGGGAATCCAGGTCTAGTCACCAGACTT +
Preference number: 3 (lower is better)
Translates to: LTTWHWSSPSTL*SFGNPGLVTRL
Trigger: AAGTCTGGTGACTAGACCTGGATTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR CAA 90 bp CAGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCCTGCATTGTACTGTATaGTTGTTCAATAGGAATGAG +
Preference number: 3 (lower is better)
Translates to: QQEQDYSALHFSALLCTALHCTV*LFNRNE
Trigger: CTCATTCCTATTGAACAACAATACAGTACAATGCAG...GGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TACCTTCTAGTAACATCATCAGCTTTCCAAACATGGTaGGAATGCAAGGAAGGACTTGGGTCTGCACCCTTC +
Preference number: 3 (lower is better)
Translates to: YLLVTSSAFQTW*ECKEGLGSAPF
Trigger: GAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCTGATGATGTTACTAGAAGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TCAAGGAAAGGAACAAATGACTGTGTGATACACATCTaGGCAGTATTTGTGCCCGCAGGCTCATCTCGCATT +
Preference number: 3 (lower is better)
Translates to: SRKGTNDCVIHI*AVFVPAGSSRI
Trigger: AATGCGAGATGAGCCTGCGGGCACAAATACTGCTCAGATGTGTATCACACAGTCATTTGTTCCTTTCCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GCACTTGTATCCCTCAGCCTGTGCAGCAAATGCACATaGATTCTACAGCATGTCACCAGCATTACTGATTCT +
Preference number: 3 (lower is better)
Translates to: ALVSLSLCSKCT*ILQHVTSITDS
Trigger: AGAATCAGTAATGCTGGTGACATGCTGTAGAATTCATGTGCATTTGCTGCACAGGCTGAGGGATACAAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GAACAAAGTACTTGTTTTGAGCCTTGGTGTGCTTCATaGGCCCAGTGCTACTCCCAATTCCTGGGATATAGA +
Preference number: 3 (lower is better)
Translates to: EQSTCFEPWCAS*AQCYSQFLGYR
Trigger: TCTATATCCCAGGAATTGGGAGTAGCACTGGGCTCATGAAGCACACCAAGGCTCAAAACAAGTACTTTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp TTTGTACAGCCTTTAACAGAAGCCGACCTCATGAACTaGAGGTTCTGTGTGAGAACAAAGTTTCAGCAGCCT +
Preference number: 3 (lower is better)
Translates to: FVQPLTEADLMN*RFCVRTKFQQP
Trigger: AGGCTGCTGAAACTTTGTTCTCACACAGAACCTGCAGTTCATGAGGTCGGCTTCTGTTAAAGGCTGTACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GCGCTTCATCTCTTTAGATTTCTTGTGAGGAGTAATTaGTACGTGATGGCACCAGGCAGCCTGAGCATAAAA +
Preference number: 3 (lower is better)
Translates to: ALHLFRFLVRSN*YVMAPGSLSIK
Trigger: TTTTATGCTCAGGCTGCCTGGTGCCATCACGTAGCAATTACTCCTCACAAGAAATCTAAAGAGATGAAGCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp ATGGAGTTTCGGGAATCCAGGTCTAGTCACCAGACTTaGTCAGAAAGCCTTCACTTGCTGCATTATCTCATT +
Preference number: 3 (lower is better)
Translates to: MEFRESRSSHQT*SESLHLLHYLI
Trigger: AATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGACTAGACCTGGATTCCCGAAACTCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR CCA 72 bp GGCTGCTTTCACATGTCACTCTGTTTACAATGTCCCTaGTTACAGGCTCCAAACAGCTTGGGAAGAAAAACT +
Preference number: 3 (lower is better)
Translates to: GCFHMSLCLQCP*LQAPNSLGRKT
Trigger: AGTTTTTCTTCCCAAGCTGTTTGGAGCCTGTAACCAGGGACATTGTAAACAGAGTGACATGTGAAAGCAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTaGGCATGGCAACAGCCCCTTTCTCATCAGTCACAA +
Preference number: 3 (lower is better)
Translates to: STTTQANPFILI*AWQQPLSHQSQ
Trigger: TTGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp CTAGCCCAAGTGCCTCTGAAAACAAAAACTTGTAGCTaGGACACAACCTCTCTACCATCTAGAGCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: LAQVPLKTKTCS*DTTSLPSRAVL
Trigger: AAGAACAGCTCTAGATGGTAGAGAGGTTGTGTCCCAGCTACAAGTTTTTGTTTTCAGAGGCACTTGGGCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AACCAGAATGTTTATGTCAACAAGAACCAAGTTCCTTaGCCAGAGTGGAAAGGTATGCTCAGCAAGGAAGGG +
Preference number: 3 (lower is better)
Translates to: NQNVYVNKNQVP*PEWKGMLSKEG
Trigger: CCCTTCCTTGCTGAGCATACCTTTCCACTCTGGCCAAGGAACTTGGTTCTTGTTGACATAAACATTCTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp CTCTCCGATAGGAGAGAGATCTATCAGATCTGCTTATaGAGAGACTGCTACCCCATCTCTACTACAACTCAA +
Preference number: 3 (lower is better)
Translates to: LSDRREIYQICL*RDCYPISTTTQ
Trigger: TTGAGTTGTAGTAGAGATGGGGTAGCAGTCTCTTCATAAGCAGATCTGATAGATCTCTCTCCTATCGGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp CAGGGTGGCCTGTCACTAAAAAGCTGTCATGTGAAATaGGTTAGGAGGAAAACAGCGCTTCATCTCTTTAGA +
Preference number: 3 (lower is better)
Translates to: QGGLSLKSCHVK*VRRKTALHLFR
Trigger: TCTAAAGAGATGAAGCGCTGTTTTCCTCCTAACTCATTTCACATGACAGCTTTTTAGTGACAGGCCACCCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GAAGCCGACCTCATGAACTGCAGGTTCTTTGAATACTaGGATCACAGCTTACAGTCACTATATCTCAGCCTA +
Preference number: 3 (lower is better)
Translates to: EADLMNCRFFEY*DHSLQSLYLSL
Trigger: TAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGAACCTGCAGTTCATGAGGTCGGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204569.2
3UTR GCA 72 bp TTAACTGCTGCAGCACAAATATGGGCAAATCTGTTCTaGCAAGTCTGTGAGCAAAGGAGTAAGCACAACTCT +
Preference number: 3 (lower is better)
Translates to: LTAAAQIWANLF*QVCEQRSKHNS
Trigger: AGAGTTGTGCTTACTCCTTTGCTCACAGACTTGGCAGAACAGATTTGCCCATATTTGTGCTGCAGCAGTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp CTAGTCACCAGACTTGCTCAGAAAGCCTTCACTTGCTaGATTATCTCATTGAACCCGAAAAGGACTCTGTAT +
Preference number: 3 (lower is better)
Translates to: LVTRLAQKAFTC*IISLNPKRTLY
Trigger: ATACAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAGTCTGGTGACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR CCA 72 bp AAAAGAAGTCTAGCAGCAAATGCTTTTGTGAGTCACTaGCCACTGGAGGGAGAGTGTTTCTGTCTTACTGAT +
Preference number: 3 (lower is better)
Translates to: KRSLAANAFVSH*PLEGECFCLTD
Trigger: ATCAGTAAGACAGAAACACTCTCCCTCCAGTGGCCAGTGACTCACAAAAGCATTTGCTGCTAGACTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR-3UTR CAA 90 bp TTTCTAAATGAAAGATGCTTCTCAACCTGGCTAAAAACTGCCCTGAGGAAATTAATGACGGCCATCATGTaGGAGAACAGCACAGCTTCC +
Preference number: 3 (lower is better)
Translates to: FLNERCFSTWLKTALRKLMTAIM*ENSTAS
Trigger: GGAAGCTGTGCTGTTCTCCAACATGATGGCCGTCAT...TAATTTCCTCAGGGCAGTTTTTAGCCAGGTTGAGAAGCATCTTTCATTTAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CAA 90 bp TTCATCACTAAGTCATCCTGGCAAGAAAACCTTCCAACATTCCAACTGCACTTTACCCAACCCCTTACTTaGCCATACTATGCACCAAAC +
Preference number: 3 (lower is better)
Translates to: FITKSSWQENLPTFQLHFTQPLT*PYYAPN
Trigger: GTTTGGTGCATAGTATGGCAAAGTAAGGGGTTGGGT...AAAGTGCAGTTGGAATGTTGGAAGGTTTTCTTGCCAGGATGACTTAGTGATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp CAGATTAAGAGAGAGAGCATGTCTAGCATTCAAGAGTaGTCCCTTTTGTTACACACACACACACACACACAC +
Preference number: 3 (lower is better)
Translates to: QIKRESMSSIQE*SLLLHTHTHTH
Trigger: GTGTGTGTGTGTGTGTGTGTGTAACAAAAGGGATCACTCTTGAATGCTAGACATGCTCTCTCTCTTAATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR TCA 72 bp TTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTaGACCCGAAAAGGACTCTGTATAAAGTGCAGACCT +
Preference number: 3 (lower is better)
Translates to: LLRKPSLAALSH*TRKGLCIKCRP
Trigger: AGGTCTGCACTTTATACAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
3UTR GCA 72 bp CTTCCTAAATCATTTTTAAGAATAGTGACTTGTGTCTaGAGAGGACTACACTTGTGCCTGAATGGGGGTGAG +
Preference number: 3 (lower is better)
Translates to: LPKSFLRIVTCV*RGLHLCLNGGE
Trigger: CTCACCCCCATTCAGGCACAAGTGTAGTCCTCTGCAGACACAAGTCACTATTCTTAAAAATGATTTAGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TTGCCACAAACAAGCAGGGTGGTTTGCAAAGACCTCTaGGGTTTTAGTTCCATGAAAAACAATATTCCTTGC +
Preference number: 3 (lower is better)
Translates to: LPQTSRVVCKDL*GFSSMKNNIPC
Trigger: GCAAGGAATATTGTTTTTCATGGAACTAAAACCCCAGAGGTCTTTGCAAACCACCCTGCTTGTTTGTGGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp ACTGTAACCAATGAGAAGGTGATATCTGTATGTCCCTaGAGTTCTCACTGCTCAAAAACTGACAGACTTGGT +
Preference number: 3 (lower is better)
Translates to: TVTNEKVISVCP*SSHCSKTDRLG
Trigger: ACCAAGTCTGTCAGTTTTTGAGCAGTGAGAACTCCAGGGACATACAGATATCACCTTCTCATTGGTTACAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TTACTTTGCCATACTATGCACCAAACCTCATCAGCATaGGGTATGTTGGAAATCTATGGAGCCATTATGAGG +
Preference number: 3 (lower is better)
Translates to: LLCHTMHQTSSA*GMLEIYGAIMR
Trigger: CCTCATAATGGCTCCATAGATTTCCAACATACCTCATGCTGATGAGGTTTGGTGCATAGTATGGCAAAGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp AAACAAGTATTTACAAACCCTGGGCTGCAAGTTGGCTaGTTTAACTGCTGCAGCACAAATATGGGCAAATCT +
Preference number: 3 (lower is better)
Translates to: KQVFTNPGLQVG*FNCCSTNMGKS
Trigger: AGATTTGCCCATATTTGTGCTGCAGCAGTTAAATCAGCCAACTTGCAGCCCAGGGTTTGTAAATACTTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AGATTCTTTCTTCCTATTTCCCAATGGAGCACAGCATaGTTTGCAGAAAAAGTGTCAGTTGGCAAAGATGGT +
Preference number: 3 (lower is better)
Translates to: RFFLPISQWSTA*FAEKVSVGKDG
Trigger: ACCATCTTTGCCAACTGACACTTTTTCTGCAAAGCATGCTGTGCTCCATTGGGAAATAGGAAGAAAGAATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GCAAGCAGTTGTTGTTGGAACTTTCTAAATGAAAGATaGTTCTCAACCTGGCTAAAAACTGCCCTGAGGAAA +
Preference number: 3 (lower is better)
Translates to: ASSCCWNFLNER*FSTWLKTALRK
Trigger: TTTCCTCAGGGCAGTTTTTAGCCAGGTTGAGAAGCATCTTTCATTTAGAAAGTTCCAACAACAACTGCTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AAGAAAATATATTCCTGCTATCAGCTAAGGACAGACTaGACACTGCCAAGACTGAGCCAGTTTCCATCTATT +
Preference number: 3 (lower is better)
Translates to: KKIYSCYQLRTD*TLPRLSQFPSI
Trigger: AATAGATGGAAACTGGCTCAGTCTTGGCAGTGTGCAGTCTGTCCTTAGCTGATAGCAGGAATATATTTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp AGTCACTATATCTCAGCCTATTTTATACAAGTGATATaGCTACGGAGGTCCGAGGAGAACGAGAATAAAGTG +
Preference number: 3 (lower is better)
Translates to: SHYISAYFIQVI*LRRSEENENKV
Trigger: CACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
ENSMUST00000204569.2
3UTR-3UTR CAA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCCTGCATTGTACTGTATaGTTGTTCAATAGGAATGAG +
Preference number: 3 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFLHCTV*LFNRNE
Trigger: CTCATTCCTATTGAACAACAATACAGTACAATGCAG...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR TCA 72 bp TCAGTCCATCACGAATGCCAGAGAAAATATGCTACTTaGGGAAATCCTCAAGTAACACCAATTTTGTGGTGT +
Preference number: 3 (lower is better)
Translates to: SVHHECQRKYAT*GNPQVTPILWC
Trigger: ACACCACAAAATTGGTGTTACTTGAGGATTTCCTCAAGTAGCATATTTTCTCTGGCATTCGTGATGGACTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp GCGAAGTTCAGTCCATCACGAATGCCAGAGAAAATATaGTACTTGAGGAAATCCTCAAGTAACACCAATTTT +
Preference number: 3 (lower is better)
Translates to: AKFSPSRMPEKI*YLRKSSSNTNF
Trigger: AAAATTGGTGTTACTTGAGGATTTCCTCAAGTAGCATATTTTCTCTGGCATTCGTGATGGACTGAACTTCGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp CGATCAGAACAGCAGAGTCAGCATTCACAGAGTACTTaGTGTGTAACAGGTACCATTAAAAGCTTTGAATAT +
Preference number: 3 (lower is better)
Translates to: RSEQQSQHSQST*CVTGTIKSFEY
Trigger: ATATTCAAAGCTTTTAATGGTACCTGTTACACAGCAAGTACTCTGTGAATGCTGACTCTGCTGTTCTGATCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AAAAGCCCAGGATCTCTCAAGCAGCATCCACTAAGTTaGACTTCATTATATACAGTTTTGGTAACAGCACAA +
Preference number: 3 (lower is better)
Translates to: KSPGSLKQHPLS*TSLYTVLVTAQ
Trigger: TTGTGCTGTTACCAAAACTGTATATAATGAAGTGCAACTTAGTGGATGCTGCTTGAGAGATCCTGGGCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR-3UTR CAA 90 bp ATTAACTCACAGCTAAAGCCCAGAGTAAATCTTTCAGTAACCACATACCTTTTTGTATGGGTAGGAAACTaGAATTGGCAGGTAGATGGT +
Preference number: 3 (lower is better)
Translates to: INSQLKPRVNLSVTTYLFVWVGN*NWQVDG
Trigger: ACCATCTACCTGCCAATTCAAGTTTCCTACCCATAC...AAAAAGGTATGTGGTTACTGAAAGATTTACTCTGGGCTTTAGCTGTGAGTTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATaGGGTACCGTTTCACAGAACTGGTTTCTTTTGTTT +
Preference number: 3 (lower is better)
Translates to: YNEGAGINYFQE*GTVSQNWFLLF
Trigger: AAACAAAAGAAACCAGTTCTGTGAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR GCA 72 bp CAAGAGCTACACACTGAAGGGTTTACATCTAGATATTaGTACATGTCCAAAAGGAGAGCTTTAAAACAGACA +
Preference number: 3 (lower is better)
Translates to: QELHTEGFTSRY*YMSKRRALKQT
Trigger: TGTCTGTTTTAAAGCTCTCCTTTTGGACATGTAGCAATATCTAGATGTAAACCCTTCAGTGTGTAGCTCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp GCCTGGTACATTAAGTTTAGTAAGACCACTTTCAAGTaGTGGGCACTGCTTGAAGTTTTGAAAAGGAATTTA +
Preference number: 3 (lower is better)
Translates to: AWYIKFSKTTFK*WALLEVLKRNL
Trigger: TAAATTCCTTTTCAAAACTTCAAGCAGTGCCCATCACTTGAAAGTGGTCTTACTAAACTTAATGTACCAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp GGACACCTGTCTCGGATTAATTATAATACTGCTAGCTaGCAAAGTCAGAAAAGTAAAAGCTCAAGTTATGTA +
Preference number: 3 (lower is better)
Translates to: GHLSRINYNTAS*QSQKSKSSSYV
Trigger: TACATAACTTGAGCTTTTACTTTTCTGACTTTGCCAGCTAGCAGTATTATAATTAATCCGAGACAGGTGTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp TTGGTTAGAATAAGATTCTTTCTTCCTATTTCCCAATaGAGCACAGCATGCTTTGCAGAAAAAGTGTCAGTT +
Preference number: 3 (lower is better)
Translates to: LVRIRFFLPISQ*STACFAEKVSV
Trigger: AACTGACACTTTTTCTGCAAAGCATGCTGTGCTCCATTGGGAAATAGGAAGAAAGAATCTTATTCTAACCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp AAATCTCAAGGCAGATTCCAGCCTAGAGTCCAAATTTaGTGGTCAATTTCAAATAACAATACAACTGCAACT +
Preference number: 3 (lower is better)
Translates to: KSQGRFQPRVQI*WSISNNNTTAT
Trigger: AGTTGCAGTTGTATTGTTATTTGAAATTGACCATCAAATTTGGACTCTAGGCTGGAATCTGCCTTGAGATTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CCA 72 bp GCAGAGAAGCAGAACTTTATGTTAATCTCATACAATTaGACGAAGCTAAGAGCTTCATTTATATTTCTCTGC +
Preference number: 3 (lower is better)
Translates to: AEKQNFMLISYN*TKLRASFIFLC
Trigger: GCAGAGAAATATAAATGAAGCTCTTAGCTTCGTCCAATTGTATGAGATTAACATAAAGTTCTGCTTCTCTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp AAATCCTACAATTCTACCCACATACACTGGACTCAGTaGATGTGTAATGTTTCTCTTGAATATAAAGCGTTT +
Preference number: 3 (lower is better)
Translates to: KSYNSTHIHWTQ*MCNVSLEYKAF
Trigger: AAACGCTTTATATTCAAGAGAAACATTACACATTCACTGAGTCCAGTGTATGTGGGTAGAATTGTAGGATTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR TCA 72 bp TTTCCAAGTGATGTAAGCCTTTCTAAGTTCCTCAAGTaGCATTCTCCATACTTTTGTTTTAACATCTCAAAG +
Preference number: 3 (lower is better)
Translates to: FPSDVSLSKFLK*HSPYFCFNISK
Trigger: CTTTGAGATGTTAAAACAAAAGTATGGAGAATGTCACTTGAGGAACTTAGAAAGGCTTACATCACTTGGAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR GCA 72 bp AGAAAGCAGGATAAAAAGGCTTTTTCTCTAACATTCTaGATTGTACTGTATTGTTGTTCAATAGGAATGAGC +
Preference number: 3 (lower is better)
Translates to: RKQDKKAFSLTF*IVLYCCSIGMS
Trigger: GCTCATTCCTATTGAACAACAATACAGTACAATGCAGAATGTTAGAGAAAAAGCCTTTTTATCCTGCTTTCT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR CAA 72 bp GATGTCCCTGCCAAGGACCCTTCCAGAATCCCCTCATaGCTCTGTGCTGTCCCATCTAAAGGCCTGCGGACT +
Preference number: 4 (lower is better)
Translates to: DVPAKDPSRIPS*LCAVPSKGLRT
Trigger: AGTCCGCAGGCCTTTAGATGGGACAGCACAGAGCAATGAGGGGATTCTGGAAGGGTCCTTGGCAGGGACATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp GGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCCAAGCAAGCCCGGGCCTGATCTaGTTTAATCTCATTAGTGCA +
Preference number: 4 (lower is better)
Translates to: GEPDTLQFCHRLPPLCQASPGLI*FNLISA
Trigger: TGCACTAATGAGATTAAATCAGATCAGGCCCGGGCT...TGCTTGGCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAACTGCCCCGAACTGCCTaGACTGCCGCAGATACTGCT +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQLPRTA*TAADTA
Trigger: AGCAGTATCTGCGGCAGTCCAGGCAGTTCGGGGCAG...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp GGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCCAAGCAACAAATCACGCAGAATaGGGAGGACAATTACACATG +
Preference number: 4 (lower is better)
Translates to: GEPDTLQFCHRLPPLCQATNHAE*GGQLHM
Trigger: CATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGT...TGCTTGGCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp GCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTATGCAGGGGCAGCTGTaGTGTAACCATATGGGGTTC +
Preference number: 4 (lower is better)
Translates to: AGTGLQCTALLCSALYSLMQGQL*CNHMGF
Trigger: GAACCCCATATGGTTACAGCACAGCTGCCCCTGCAT...AAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp AAATCCCTTCATCCTTATCTGGGCATGGCAACAGCCCCTTTCTCATCAGTCACAAGACATTGTGAAGACTaGGGCATGGACCGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: KSLHPYLGMATAPFSSVTRHCED*GMDRAR
Trigger: TCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCT...TGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp CACACCCGTGCTGAAGTTCATCATGACAGCAGGTACTaGGGCCTGCTGTTCTCATTGACACTCCACCCATTT +
Preference number: 4 (lower is better)
Translates to: HTRAEVHHDSRY*GLLFSLTLHPF
Trigger: AAATGGGTGGAGTGTCAATGAGAACAGCAGGCCCAAGTACCTGCTGTCATGATGAACTTCAGCACGGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp TGGCTGGCATCAAACTACCCAGTCCATTTTGAGCCCTaGCTCCACCCCAGTGGCTATAAACACTACCATTGC +
Preference number: 4 (lower is better)
Translates to: WLASNYPVHFEP*LHPSGYKHYHC
Trigger: GCAATGGTAGTGTTTATAGCCACTGGGGTGGAGCAAGGGCTCAAAATGGACTGGGTAGTTTGATGCCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp CAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGATCCTCTGCCCCGAACTaGCTGGACTGCCGCAGATAC +
Preference number: 4 (lower is better)
Translates to: QSLYLSLFYTSDMATEVRSSAPN*LDCRRY
Trigger: GTATCTGCGGCAGTCCAGGCAGTTCGGGGCAGAGGA...TCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAACTTGGGCAAACCATATaGAGGGGCAGCTGTGCTGTA +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQLGQTI*RGSCAV
Trigger: TACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAG...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCGTGAAGACTGGGGCATaGACCGGGCCAGATTGTGAC +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFVKTGA*TGPDCD
Trigger: GTCACAATCTGGCCCGGTCCATGCCCCAGTCTTCAC...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR CAA 72 bp ATGCAACACAGGTCAGAGGAGGTGATCTTCTTGAGATaGGCACTTGTATCCCTCAGCCTGTGCAGCAAATGC +
Preference number: 4 (lower is better)
Translates to: MQHRSEEVIFLR*ALVSLSLCSKC
Trigger: GCATTTGCTGCACAGGCTGAGGGATACAAGTGCCAATCTCAAGAAGATCACCTCCTCTGACCTGTGTTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp GACTCAACCTGTCCACCCTCTTCTGTGATCAAGTCTTaGCAAGCATGTGTGAGCCAGCACTTCCATGGTAGA +
Preference number: 4 (lower is better)
Translates to: DSTCPPSSVIKS*QACVSQHFHGR
Trigger: TCTACCATGGAAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAGGTTGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp GCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTAGCCCGGGCCTGATCTaGTTTAATCTCATTAGTGCA +
Preference number: 4 (lower is better)
Translates to: AGTGLQCTALLCSALYSLSPGLI*FNLISA
Trigger: TGCACTAATGAGATTAAATCAGATCAGGCCCGGGCT...AAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp ACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACCCCCCTCAGGTTTTGTaGCTTTGTTTGTTTCGTCCA +
Preference number: 4 (lower is better)
Translates to: TVHCTSLLCFVQPLTEADPPQVL*LCLFRP
Trigger: TGGACGAAACAAACAAAGGCACAAAACCTGAGGGGG...GTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GTGACAGCAACTATGTGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTGCATTCAGGCATTTTTaGCTGTCCAATAAGTCCGGA +
Preference number: 4 (lower is better)
Translates to: VTATMCPTCSLPSIHPAVAFRHF*LSNKSG
Trigger: TCCGGACTTATTGGACAGGCAAAAATGCCTGAATGC...AACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp CAGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCGACTGCCGCAGATACTaGTGTATTCACAACACCTTT +
Preference number: 4 (lower is better)
Translates to: QQEQDYSALHFSALLCTADCRRY*CIHNTF
Trigger: AAAGGTGTTGTGAATACAGCAGTATCTGCGGCAGTC...GGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCTCCTCTGCCCCGAACTaGCTGGACTGCCGCAGATAC +
Preference number: 4 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVISSAPN*LDCRRY
Trigger: GTATCTGCGGCAGTCCAGGCAGTTCGGGGCAGAGGA...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp CTTTCTTCCTATTTCCCAATGGAGCACAGCATGCTTTGCAGAAAAAGTGTCAGTGAGTTCCTCTTCCTCTaGCCCGAACTGCCTGGACTG +
Preference number: 4 (lower is better)
Translates to: LSSYFPMEHSMLCRKSVSEFLFL*PELPGL
Trigger: CAGTCCAGGCAGTTCGGGGCAGAGGAAGAGGAACTC...ACTGACACTTTTTCTGCAAAGCATGCTGTGCTCCATTGGGAAATAGGAAGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACCTTGGGCAAACCATATaGAGGGGCAGCTGTGCTGTA +
Preference number: 4 (lower is better)
Translates to: EQDYSALHFSALLCTAFNLGQTI*RGSCAV
Trigger: TACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAG...GTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp CAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGTGAAGACTGGGGCATaGACCGGGCCAGATTGTGAC +
Preference number: 4 (lower is better)
Translates to: QSLYLSLFYTSDMATEVRVKTGA*TGPDCD
Trigger: GTCACAATCTGGCCCGGTCCATGCCCCAGTCTTCAC...TCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp AAATCCCTTCATCCTTATCTGGGCATGGCAACAGCCCCTTTCTCATCAGTCACAGTGCTGCACTTGCCTTaGCCACTTTCTTGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: KSLHPYLGMATAPFSSVTVLHLP*PLSCLD
Trigger: GTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCAC...TGTGACTGATGAGAAAGGGGCTGTTGCCATGCCCAGATAAGGATGAAGGGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp CAGCTTTCCAAACATGGTGAGAATGCAAGGAAGGACTaGGGTCTGCACCCTTCACAGACCAGCACAATGTTA +
Preference number: 4 (lower is better)
Translates to: QLSKHGENARKD*GLHPSQTSTML
Trigger: TAACATTGTGCTGGTCTGTGAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp TGCCCTCATGTGGCACCTTCACATCAAAATGCCCACTaGTCTACTCATAGTTGTCTTCACCCTTCTGGAACC +
Preference number: 4 (lower is better)
Translates to: CPHVAPSHQNAH*STHSCLHPSGT
Trigger: GGTTCCAGAAGGGTGAAGACAACTATGAGTAGACAAGTGGGCATTTTGATGTGAAGGTGCCACATGAGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp ATATCAACTGGCTGGCATCAAACTACCCAGTCCATTTaGAGCCCTTGCTCCACCCCAGTGGCTATAAACACT +
Preference number: 4 (lower is better)
Translates to: ISTGWHQTTQSI*SPCSTPVAINT
Trigger: AGTGTTTATAGCCACTGGGGTGGAGCAAGGGCTCAAAATGGACTGGGTAGTTTGATGCCAGCCAGTTGATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp GGTTTTCACCTCCTGGACCTGAACAAAGTACTTGTTTaGAGCCTTGGTGTGCTTCATGAGCCCAGTGCTACT +
Preference number: 4 (lower is better)
Translates to: GFHLLDLNKVLV*SLGVLHEPSAT
Trigger: AGTAGCACTGGGCTCATGAAGCACACCAAGGCTCAAAACAAGTACTTTGTTCAGGTCCAGGAGGTGAAAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp GCATCAGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACTTGGACCTGCACCTCTaGATTTCTGTCCATCTACTT +
Preference number: 4 (lower is better)
Translates to: ASAGTGLQCTALLCSALYLDLHL*ISVHLL
Trigger: AAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAA...GTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp AACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAATCCAGGTTGGACCTGCACCTCTaGATTTCTGTCCATCTACTT +
Preference number: 4 (lower is better)
Translates to: NNLALVLSFYPMEFRESRLDLHL*ISVHLL
Trigger: AAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAA...CCTGGATTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp AGCTTTCCAAACATGGTGAGAATGCAAGGAAGGACTTGGGTCTGCACCCTTCACATGTGGGTACTCTGTTaGACAAATCACGCAGAATGC +
Preference number: 4 (lower is better)
Translates to: SFPNMVRMQGRTWVCTLHMWVLC*TNHAEC
Trigger: GCATTCTGCGTGATTTGTGCAACAGAGTACCCACAT...GTGAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTTCCTCTGCCCCGAACTaGCTGGACTGCCGCAGATAC +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVSSAPN*LDCRRY
Trigger: GTATCTGCGGCAGTCCAGGCAGTTCGGGGCAGAGGA...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp CTTATAGGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCTGTTTCACCATAACATaGCGATCATCATTGGCAAAA +
Preference number: 4 (lower is better)
Translates to: LIGEPDTLQFCHRLPPLCCFTIT*RSSLAK
Trigger: TTTTGCCAATGATGATCGCCATGTTATGGTGAAACA...GCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACCTATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp TACCCCATCTCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTGGGCATGGTGTGCTGTAACCATATaGGGTTCCGTAACCTGGAGC +
Preference number: 4 (lower is better)
Translates to: YPISTTTQANPFILIWAWCAVTI*GSVTWS
Trigger: GCTCCAGGTTACGGAACCCCATATGGTTACAGCACA...CCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGAGATGGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAATTCGTCCAGCCAATCTaGGACATGTTTAAGAGCACA +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQFVQPI*DMFKST
Trigger: TGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAA...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR TCA 90 bp TCAGTTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAAGTGAGGATAGGACCCTaGGTTCTTACCTCTAAGGTA +
Preference number: 4 (lower is better)
Translates to: SVNNLALVLSFYPMEFREVRIGP*VLTSKV
Trigger: TACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCAC...TTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGTTCCTCTTCCTCTaGCCCGAACTGCCTGGACTG +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVEFLFL*PELPGL
Trigger: CAGTCCAGGCAGTTCGGGGCAGAGGAAGAGGAACTC...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp ACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGGAGTTCCTCTTCCTCTaGCCCGAACTGCCTGGACTG +
Preference number: 4 (lower is better)
Translates to: TAYSHYISAYFIQVIWLREFLFL*PELPGL
Trigger: CAGTCCAGGCAGTTCGGGGCAGAGGAAGAGGAACTC...CCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp CAAGCAAAACCATTAAGTATTTCATTCCCAGAGGGTAACAGTTTGAGGGATTACGTGAAGACTGGGGCATaGACCGGGCCAGATTGTGAC +
Preference number: 4 (lower is better)
Translates to: QAKPLSISFPEGNSLRDYVKTGA*TGPDCD
Trigger: GTCACAATCTGGCCCGGTCCATGCCCCAGTCTTCAC...GTAATCCCTCAAACTGTTACCCTCTGGGAATGAAATACTTAATGGTTTTGCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp TACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCAGACATTGTGAAGACTaGGGCATGGACCGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: YSHYISAYFIQVIWLRRSRHCED*GMDRAR
Trigger: TCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCT...GGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTCTGCCCCGAACTGCCTaGACTGCCGCAGATACTGCT +
Preference number: 4 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMALPRTA*TAADTA
Trigger: AGCAGTATCTGCGGCAGTCCAGGCAGTTCGGGGCAG...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR TCA 90 bp GAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACTTCGTCCAGCCAATCTaGGACATGTTTAAGAGCACA +
Preference number: 4 (lower is better)
Translates to: EQDYSALHFSALLCTAFNFVQPI*DMFKST
Trigger: TGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAA...GTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCGTGAGGATAGGACCCTaGGTTCTTACCTCTAAGGTA +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFVRIGP*VLTSKV
Trigger: TACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCAC...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp TACCCCATCTCTACTACAACTCAAGCAAATCCCTTCATCCTTATCTGGGCATGGCCGTGGGTTTGTCTTTaGACATTAAGACTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: YPISTTTQANPFILIWAWPWVCL*TLRLAP
Trigger: TGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGG...CCATGCCCAGATAAGGATGAAGGGATTTGCTTGAGTTGTAGTAGAGATGGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTGAACCCGAAAAGGACTCTGGCATTCAGGCATTTTTaGCTGTCCAATAAGTCCGGA +
Preference number: 4 (lower is better)
Translates to: AQKAFTCCIISLNPKRTLAFRHF*LSNKSG
Trigger: TCCGGACTTATTGGACAGGCAAAAATGCCTGAATGC...CAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCCCATCCTTTCAATGGTaGCCATGTGGGTACTCTGTT +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFPSFQW*PCGYSV
Trigger: AACAGAGTACCCACATGGGCACCATTGAAAGGATGG...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp GCCAATTTCCTGACATCTCTGCTTATAGGTGAGCCGGATACTTTACAGTTTTGCCCATCCTTTCAATGGTaGCCATGTGGGTACTCTGTT +
Preference number: 4 (lower is better)
Translates to: ANFLTSLLIGEPDTLQFCPSFQW*PCGYSV
Trigger: AACAGAGTACCCACATGGGCACCATTGAAAGGATGG...GCAAAACTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCAGGATTTTTGCCACTTaGTGTGAGGATAGGACCCTG +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFRIFAT*CEDRTL
Trigger: CAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCT...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp AGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGGGTTTCCGTaGGTTTGTCTTTGCACATTA +
Preference number: 4 (lower is better)
Translates to: SRNRITVHCTSLLCFVQPLTGFP*VCLCTL
Trigger: TAATGTGCAAAGACAAACCCACGGAAACCCTGTTAA...AGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp AACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAATCCAGGGCATGCTGTGCACTATaGGTAATATCTTCTTTTTGC +
Preference number: 4 (lower is better)
Translates to: NNLALVLSFYPMEFRESRACCAL*VISSFC
Trigger: GCAAAAAGAAGATATTACCCATAGTGCACAGCATGC...CCTGGATTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCACAAAGCGCTTGTCATaGCTTCCACCAGTTTCTGAG +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFTKRLS*LPPVSE
Trigger: CTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGT...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp CAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGTGCTGCACTTGCCTTaGCCACTTTCTTGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: QSLYLSLFYTSDMATEVRVLHLP*PLSCLD
Trigger: GTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCAC...TCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp ATTAACTCACAGCTAAAGCCCAGAGTAAATCTTTCAGTAACCACATACCTTTTTCTGCCCCGAACTGCCTaGACTGCCGCAGATACTGCT +
Preference number: 4 (lower is better)
Translates to: INSQLKPRVNLSVTTYLFLPRTA*TAADTA
Trigger: AGCAGTATCTGCGGCAGTCCAGGCAGTTCGGGGCAG...AAAAAGGTATGTGGTTACTGAAAGATTTACTCTGGGCTTTAGCTGTGAGTTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp AGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGTGTGCTGTAACCATATaGGGTTCCGTAACCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SHYISAYFIQVIWLRRSECAVTI*GSVTWS
Trigger: GCTCCAGGTTACGGAACCCCATATGGTTACAGCACA...CTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
3UTR CAA 72 bp AACAATCTCAGGAGCTACTTAACCCAACCCCTTACTTaGCCATACTATGCACCAAACCTCATCAGCATGAGG +
Preference number: 4 (lower is better)
Translates to: NNLRSYLTQPLT*PYYAPNLISMR
Trigger: CCTCATGCTGATGAGGTTTGGTGCATAGTATGGCAAAGTAAGGGGTTGGGTTAAGTAGCTCCTGAGATTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp GGAGTAGGGGTATACAATTCAGTTAACAACTTGGCATaGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAA +
Preference number: 4 (lower is better)
Translates to: GVGVYNSVNNLA*VLSFYPMEFRE
Trigger: TTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAACTGAATTGTATACCCCTACTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR TCA 90 bp ATTAACTCACAGCTAAAGCCCAGAGTAAATCTTTCAGTAACCACATACCTTTTTCGCTCACAAGGATCATaGAGACCAGGGCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: INSQLKPRVNLSVTTYLFRSQGS*RPGPPG
Trigger: TCCTGGTGGCCCTGGTCTTCATGATCCTTGTGAGCG...AAAAAGGTATGTGGTTACTGAAAGATTTACTCTGGGCTTTAGCTGTGAGTTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR TCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTACGCTCACAAGGATCATaGAGACCAGGGCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: QYSVLQQSSLFVISVETLRSQGS*RPGPPG
Trigger: TCCTGGTGGCCCTGGTCTTCATGATCCTTGTGAGCG...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR TCA 90 bp TCAAAATGTTGGCCAAGCCTAAGTCCTACACAAAGACTGCCACTAACTGAACTAGTGAGGATAGGACCCTaGGTTCTTACCTCTAAGGTA +
Preference number: 4 (lower is better)
Translates to: SKCWPSLSPTQRLPLTELVRIGP*VLTSKV
Trigger: TACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCAC...TAGTTCAGTTAGTGGCAGTCTTTGTGTAGGACTTAGGCTTGGCCAACATTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp TTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAATCCAAATCAGCAAGCCTTTTaGAACCAAGCCAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: LTTWHWSSPSTLWSFGNPNQQAF*NQANPH
Trigger: ATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATT...TGGATTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCCCGTGGGTTTGTCTTTaGACATTAAGACTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFPWVCL*TLRLAP
Trigger: TGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGG...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAAGATAGTCTAAGTGCATaGTGTGCACTATGGGTAATA +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQDSLSA*CALWVI
Trigger: TATTACCCATAGTGCACAGCATGCACTTAGACTATC...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCGACTGCCGCAGATACTaGTGTATTCACAACACCTTT +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFDCRRY*CIHNTF
Trigger: AAAGGTGTTGTGAATACAGCAGTATCTGCGGCAGTC...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp GCCAATTTCCTGACATCTCTGCTTATAGGTGAGCCGGATACTTTACAGTTTTGCGACTGCCGCAGATACTaGTGTATTCACAACACCTTT +
Preference number: 4 (lower is better)
Translates to: ANFLTSLLIGEPDTLQFCDCRRY*CIHNTF
Trigger: AAAGGTGTTGTGAATACAGCAGTATCTGCGGCAGTC...GCAAAACTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TGTAACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAATGCAGGGGCAGCTGTaGTGTAACCATATGGGGTTC +
Preference number: 4 (lower is better)
Translates to: CNLIMGMLLYKWSTKSLQMQGQL*CNHMGF
Trigger: GAACCCCATATGGTTACAGCACAGCTGCCCCTGCAT...TTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp ACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGATGCAGGGGCAGCTGTaGTGTAACCATATGGGGTTC +
Preference number: 4 (lower is better)
Translates to: TAYSHYISAYFIQVIWLRMQGQL*CNHMGF
Trigger: GAACCCCATATGGTTACAGCACAGCTGCCCCTGCAT...CCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp ACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACCTTCTTTTTGCTGAGTaGTCATATAGCTTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: TVHCTSLLCFVQPLTEADLLFAE*SYSLEH
Trigger: ATGCTCTAAGCTATATGACCACTCAGCAAAAAGAAG...GTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAAGCATGCTGTGCACTATaGGTAATATCTTCTTTTTGC +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQACCAL*VISSFC
Trigger: GCAAAAAGAAGATATTACCCATAGTGCACAGCATGC...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCGTGCTGCACTTGCCTTaGCCACTTTCTTGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVIVLHLP*PLSCLD
Trigger: GTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCAC...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR CAA 72 bp TTAAGAATAGTGACTTGTGTCTGCAGAGGACTACACTaGTGCCTGAATGGGGGTGAGTACCTTAATGAAACC +
Preference number: 4 (lower is better)
Translates to: LRIVTCVCRGLH*CLNGGEYLNET
Trigger: GGTTTCATTAAGGTACTCACCCCCATTCAGGCACAAGTGTAGTCCTCTGCAGACACAAGTCACTATTCTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp GTGGTTCAATACTCACTAATTAGAAGCCACAGTGTTTaGCCACAAACAAGCAGGGTGGTTTGCAAAGACCTC +
Preference number: 4 (lower is better)
Translates to: VVQYSLIRSHSV*PQTSRVVCKDL
Trigger: GAGGTCTTTGCAAACCACCCTGCTTGTTTGTGGCAAAACACTGTGGCTTCTAATTAGTGAGTATTGAACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp AGGAACTGCATTAAAGAGACAGCAGTATTAGGAAGGTaGAGAACCATTGCACTAGAGGAAGCTAAGCAAGGC +
Preference number: 4 (lower is better)
Translates to: RNCIKETAVLGR*RTIALEEAKQG
Trigger: GCCTTGCTTAGCTTCCTCTAGTGCAATGGTTCTCAACCTTCCTAATACTGCTGTCTCTTTAATGCAGTTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp AAACCAGAATGTTTATGTCAACAAGAACCAAGTTCCTaGGCCAGAGTGGAAAGGTATGCTCAGCAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: KPECLCQQEPSS*ARVERYAQQGR
Trigger: CCTTCCTTGCTGAGCATACCTTTCCACTCTGGCCAAGGAACTTGGTTCTTGTTGACATAAACATTCTGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp CTTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATaGAACCCGAAAAGGACTCTGTATAAAGTGCAGACC +
Preference number: 4 (lower is better)
Translates to: LAQKAFTCCIIS*NPKRTLYKVQT
Trigger: GGTCTGCACTTTATACAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR TCA 90 bp CAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGATTCGTCCAGCCAATCTaGGACATGTTTAAGAGCACA +
Preference number: 4 (lower is better)
Translates to: QSLYLSLFYTSDMATEVRFVQPI*DMFKST
Trigger: TGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAA...TCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp ATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGTAGACACCATATTTTaGACAGCTTCAAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: ITVHCTSLLCFVQPLTEAVDTIF*TASSSS
Trigger: AGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTAC...GGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCCCCCCTCAGGTTTTGTaGCTTTGTTTGTTTCGTCCA +
Preference number: 4 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVIPPQVL*LCLFRP
Trigger: TGGACGAAACAAACAAAGGCACAAAACCTGAGGGGG...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp ATAACAGCCAATTTCCTGACATCTCTGCTTATAGGTGAGCCGGATACTTTACAGATGTGGGTACTCTGTTaGACAAATCACGCAGAATGC +
Preference number: 4 (lower is better)
Translates to: ITANFLTSLLIGEPDTLQMWVLC*TNHAEC
Trigger: GCATTCTGCGTGATTTGTGCAACAGAGTACCCACAT...CTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGCTGTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TCAGTTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAATCTAAGTGCATGCTGTaGACTATGGGTAATATCTTC +
Preference number: 4 (lower is better)
Translates to: SVNNLALVLSFYPMEFRESKCML*TMGNIF
Trigger: GAAGATATTACCCATAGTGCACAGCATGCACTTAGA...TTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp GCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTGAACCCGAAAAGGACTCTGGATAGTCTAAGTGCATaGTGTGCACTATGGGTAATA +
Preference number: 4 (lower is better)
Translates to: AQKAFTCCIISLNPKRTLDSLSA*CALWVI
Trigger: TATTACCCATAGTGCACAGCATGCACTTAGACTATC...CAGAGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp CTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAAGCATGTGTGAGCCAGCACTTGATACATTCAATATCTaGATCAAAACCTGTTGGGTA +
Preference number: 4 (lower is better)
Translates to: LSTLFCDQVFASMCEPALDTFNI*IKTCWV
Trigger: TACCCAACAGGTTTTGATGCAGATATTGAATGTATC...AAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp TACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCAGGATTTTTGCCACTTaGTGTGAGGATAGGACCCTG +
Preference number: 4 (lower is better)
Translates to: YSHYISAYFIQVIWLRRSRIFAT*CEDRTL
Trigger: CAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCT...GGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TCCATCAGAAAACTTAAGATACTTGCACTGATCATAGCCTCTGTTCCCTGGTCCTTTCTTGTTTGGACCTaGACCTCTGAATTTCTGTCC +
Preference number: 4 (lower is better)
Translates to: SIRKLKILALIIASVPWSFLVWT*TSEFLS
Trigger: GGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAA...GGACCAGGGAACAGAGGCTATGATCAGTGCAAGTATCTTAAGTTTTCTGATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp AGCTTTCCAAACATGGTGAGAATGCAAGGAAGGACTTGGGTCTGCACCCTTCACCTTTTTCTTATTATTTaGCGCATTGGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: SFPNMVRMQGRTWVCTLHLFLII*RIGSRK
Trigger: TTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAG...GTGAAGGGTGCAGACCCAAGTCCTTCCTTGCATTCTCACCATGTTTGGAAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAATGTTTCACCATAACATaGCGATCATCATTGGCAAAA +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQCFTIT*RSSLAK
Trigger: TTTTGCCAATGATGATCGCCATGTTATGGTGAAACA...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAAGACATTGTGAAGACTaGGGCATGGACCGGGCCAGA +
Preference number: 4 (lower is better)
Translates to: QYSVLQQSSLFVISVETLRHCED*GMDRAR
Trigger: TCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCT...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR CAA 72 bp ATCCTAAACAAGTATTTACAAACCCTGGGCTGCAAGTaGGCTGATTTAACTGCTGCAGCACAAATATGGGCA +
Preference number: 4 (lower is better)
Translates to: ILNKYLQTLGCK*ADLTAAAQIWA
Trigger: TGCCCATATTTGTGCTGCAGCAGTTAAATCAGCCAACTTGCAGCCCAGGGTTTGTAAATACTTGTTTAGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp ATAGTCTCAAAGTCTAGAAGAAGAGTTAAATGGCCTTaGAGAAGGAAGCAGGGTAGTGAGGAATGCACAGGA +
Preference number: 4 (lower is better)
Translates to: IVSKSRRRVKWP*RRKQGSEECTG
Trigger: TCCTGTGCATTCCTCACTACCCTGCTTCCTTCTCAAAGGCCATTTAACTCTTCTTCTAGACTTTGAGACTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp ATAACAGCCAATTTCCTGACATCTCTGCTTATAGGTGAGCCGGATACTTTACAGAGGCTTCATATGTTGTaGCATCCACATCTACAGACA +
Preference number: 4 (lower is better)
Translates to: ITANFLTSLLIGEPDTLQRLHML*HPHLQT
Trigger: TGTCTGTAGATGTGGATGGCACAACATATGAAGCCT...CTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGCTGTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp ACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGATTTTTGCCACTTaGTGTGAGGATAGGACCCTG +
Preference number: 4 (lower is better)
Translates to: TAYSHYISAYFIQVIWLRRIFAT*CEDRTL
Trigger: CAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCT...CCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp AGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGTTTCTTGTTTGGACCTaGACCTCTGAATTTCTGTCC +
Preference number: 4 (lower is better)
Translates to: SHYISAYFIQVIWLRRSEFLVWT*TSEFLS
Trigger: GGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAA...CTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAACTTTTTCTTATTATTTaGCGCATTGGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQLFLII*RIGSRK
Trigger: TTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAG...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp TTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCACAAAGCGCTTGTCATaGCTTCCACCAGTTTCTGAG +
Preference number: 4 (lower is better)
Translates to: LQSLYLSLFYTSDMATEVTKRLS*LPPVSE
Trigger: CTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGT...GACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp AACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAAATTGTGCTGTAACCATATaGGGTTCCGTAACCTGGAGC +
Preference number: 4 (lower is better)
Translates to: NLIMGMLLYKWSTKSLQNCAVTI*GSVTWS
Trigger: GCTCCAGGTTACGGAACCCCATATGGTTACAGCACA...ATTTTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTACAGAACCATTCTCTTaGGCAAACCATATGCAGGGG +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVTEPFS*ANHMQG
Trigger: CCCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGT...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR TCA 90 bp AACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAAATAGCCCGGGCCTGATCTaGTTTAATCTCATTAGTGCA +
Preference number: 4 (lower is better)
Translates to: NLIMGMLLYKWSTKSLQNSPGLI*FNLISA
Trigger: TGCACTAATGAGATTAAATCAGATCAGGCCCGGGCT...ATTTTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR TCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTTTGGACCTGCACCTCTaGATTTCTGTCCATCTACTT +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVLDLHL*ISVHLL
Trigger: AAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAA...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp TACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCAATCAGCAAGCCTTTTaGAACCAAGCCAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: YSHYISAYFIQVIWLRRSNQQAF*NQANPH
Trigger: ATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATT...GGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCCGTGGGTTTGTCTTTaGACATTAAGACTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: LQSLYLSLFYTSDMATEVPWVCL*TLRLAP
Trigger: TGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGG...GACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp TGTAACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAGCATTCAGGCATTTTTaGCTGTCCAATAAGTCCGGA +
Preference number: 4 (lower is better)
Translates to: CNLIMGMLLYKWSTKSLQAFRHF*LSNKSG
Trigger: TCCGGACTTATTGGACAGGCAAAAATGCCTGAATGC...TTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp GTAGGGTATTTATTTACAACAAGGCCAATTCCATCAGGAATTCCATCAGAAAACCCATCCTTTCAATGGTaGCCATGTGGGTACTCTGTT +
Preference number: 4 (lower is better)
Translates to: VGYLFTTRPIPSGIPSENPSFQW*PCGYSV
Trigger: AACAGAGTACCCACATGGGCACCATTGAAAGGATGG...GTTTTCTGATGGAATTCCTGATGGAATTGGCCTTGTTGTAAATAAATACCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GTCTGTAAACTCCCTGACAAGAGCTACACACTGAAGGGTTTACATCTAGATATTAGGCTTCATATGTTGTaGCATCCACATCTACAGACA +
Preference number: 4 (lower is better)
Translates to: VCKLPDKSYTLKGLHLDIRLHML*HPHLQT
Trigger: TGTCTGTAGATGTGGATGGCACAACATATGAAGCCT...AATATCTAGATGTAAACCCTTCAGTGTGTAGCTCTTGTCAGGGAGTTTACAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGGCTTCATATGTTGTaGCATCCACATCTACAGACA +
Preference number: 4 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVIRLHML*HPHLQT
Trigger: TGTCTGTAGATGTGGATGGCACAACATATGAAGCCT...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp TCAGTTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAAGATACATTCAATATCTaGATCAAAACCTGTTGGGTA +
Preference number: 4 (lower is better)
Translates to: SVNNLALVLSFYPMEFREDTFNI*IKTCWV
Trigger: TACCCAACAGGTTTTGATGCAGATATTGAATGTATC...TTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp ATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACGAGCTTTTTCTTATTATTTaGCGCATTGGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: ISAYFIQVIWLRRSEENELFLII*RIGSRK
Trigger: TTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAG...CTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp TTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCTCAATGGTGCCCATGTaGGTACTCTGTTGCACAAAT +
Preference number: 4 (lower is better)
Translates to: LQSLYLSLFYTSDMATEVSMVPM*VLCCTN
Trigger: ATTTGTGCAACAGAGTACCCACATGGGCACCATTGA...GACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp ATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTCAATGGTGCCCATGTaGGTACTCTGTTGCACAAAT +
Preference number: 4 (lower is better)
Translates to: IRNQAVLCVTTKQFICNQSMVPM*VLCCTN
Trigger: ATTTGTGCAACAGAGTACCCACATGGGCACCATTGA...CTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCCTTCTTTTTGCTGAGTaGTCATATAGCTTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFLLFAE*SYSLEH
Trigger: ATGCTCTAAGCTATATGACCACTCAGCAAAAAGAAG...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACAAAGCGCTTGTCATaGCTTCCACCAGTTTCTGAG +
Preference number: 4 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMATKRLS*LPPVSE
Trigger: CTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGT...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGGCCACTTTCTTGTTTaGACCTGCACCTCTGAATTT +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVGHFLV*TCTSEF
Trigger: AAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCC...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACAGAACCATTCTCTTaGGCAAACCATATGCAGGGG +
Preference number: 4 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMATEPFS*ANHMQG
Trigger: CCCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGT...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp ATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGAATCAGCAAGCCTTTTaGAACCAAGCCAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: IRNQAVLCVTTKQFICNQNQQAF*NQANPH
Trigger: ATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATT...CTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp ATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGACAAATCACGCAGAATaGGGAGGACAATTACACATG +
Preference number: 4 (lower is better)
Translates to: IRNQAVLCVTTKQFICNQTNHAE*GGQLHM
Trigger: CATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGT...CTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCTCTAAGTGCATGCTGTaGACTATGGGTAATATCTTC +
Preference number: 4 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVISKCML*TMGNIF
Trigger: GAAGATATTACCCATAGTGCACAGCATGCACTTAGA...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp TTCATCACTAAGTCATCCTGGCAAGAAAACCTTCCAACATTCCAACTGCACTTTGATAGTCTAAGTGCATaGTGTGCACTATGGGTAATA +
Preference number: 4 (lower is better)
Translates to: FITKSSWQENLPTFQLHFDSLSA*CALWVI
Trigger: TATTACCCATAGTGCACAGCATGCACTTAGACTATC...AAAGTGCAGTTGGAATGTTGGAAGGTTTTCTTGCCAGGATGACTTAGTGATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTTTTCTTGTTTGGACCTaGACCTCTGAATTTCTGTCC +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVFLVWT*TSEFLS
Trigger: GGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAA...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp GAGATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGTCAATGGTGCCCATGTaGGTACTCTGTTGCACAAAT +
Preference number: 4 (lower is better)
Translates to: EITAYSHYISAYFIQVIWSMVPM*VLCCTN
Trigger: ATTTGTGCAACAGAGTACCCACATGGGCACCATTGA...CCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp TATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACCTTCTTTTTGCTGAGTaGTCATATAGCTTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: YISAYFIQVIWLRRSEENLLFAE*SYSLEH
Trigger: ATGCTCTAAGCTATATGACCACTCAGCAAAAAGAAG...GTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTGGCCACTTTCTTGTTTaGACCTGCACCTCTGAATTT +
Preference number: 4 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMAGHFLV*TCTSEF
Trigger: AAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCC...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp GAGATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGGGCCACTTTCTTGTTTaGACCTGCACCTCTGAATTT +
Preference number: 4 (lower is better)
Translates to: EITAYSHYISAYFIQVIWGHFLV*TCTSEF
Trigger: AAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCC...CCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CCA 90 bp TTCATCACTAAGTCATCCTGGCAAGAAAACCTTCCAACATTCCAACTGCACTTTTATTATTTGCCGCATTaGGTCCAGAAAACAGCTTCT +
Preference number: 4 (lower is better)
Translates to: FITKSSWQENLPTFQLHFYYLPH*VQKTAS
Trigger: AGAAGCTGTTTTCTGGACCCAATGCGGCAAATAATA...AAAGTGCAGTTGGAATGTTGGAAGGTTTTCTTGCCAGGATGACTTAGTGATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp AGTGGATCTGAAAGCTGGAAAGCCTTAGGGGTCACATaGCTCTTAAGACCAAGATATAAAATTGCCATTCAA +
Preference number: 4 (lower is better)
Translates to: SGSESWKALGVT*LLRPRYKIAIQ
Trigger: TTGAATGGCAATTTTATATCTTGGTCTTAAGAGCAATGTGACCCCTAAGGCTTTCCAGCTTTCAGATCCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp TTCAGTCCATCACGAATGCCAGAGAAAATATGCTACTaGAGGAAATCCTCAAGTAACACCAATTTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: FSPSRMPEKICY*RKSSSNTNFVV
Trigger: CACCACAAAATTGGTGTTACTTGAGGATTTCCTCAAGTAGCATATTTTCTCTGGCATTCGTGATGGACTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp AGTTCCACAGAAATGAGCTGGAGTGAGAGAAATGCTTaGGCCCAGATTCTCATATGTTTTCTATTCTGTATC +
Preference number: 4 (lower is better)
Translates to: SSTEMSWSERNA*AQILICFLFCI
Trigger: GATACAGAATAGAAAACATATGAGAATCTGGGCCAAAGCATTTCTCTCACTCCAGCTCATTTCTGTGGAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAATGTGGGTACTCTGTTaGACAAATCACGCAGAATGC +
Preference number: 4 (lower is better)
Translates to: QYSVLQQSSLFVISVETLMWVLC*TNHAEC
Trigger: GCATTCTGCGTGATTTGTGCAACAGAGTACCCACAT...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp CAAGCAAAACCATTAAGTATTTCATTCCCAGAGGGTAACAGTTTGAGGGATTACTCTAAGTGCATGCTGTaGACTATGGGTAATATCTTC +
Preference number: 4 (lower is better)
Translates to: QAKPLSISFPEGNSLRDYSKCML*TMGNIF
Trigger: GAAGATATTACCCATAGTGCACAGCATGCACTTAGA...GTAATCCCTCAAACTGTTACCCTCTGGGAATGAAATACTTAATGGTTTTGCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CCA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGCATGCTGTGCACTATaGGTAATATCTTCTTTTTGC +
Preference number: 4 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVACCAL*VISSFC
Trigger: GCAAAAAGAAGATATTACCCATAGTGCACAGCATGC...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTGTAGACACCATATTTTaGACAGCTTCAAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMAVDTIF*TASSSS
Trigger: AGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTAC...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR GCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAACAAATCACGCAGAATaGGGAGGACAATTACACATG +
Preference number: 4 (lower is better)
Translates to: QYSVLQQSSLFVISVETLTNHAE*GGQLHM
Trigger: CATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGT...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp AACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAAATTTAACAGGGTTTCCGTaGGTTTGTCTTTGCACATTA +
Preference number: 4 (lower is better)
Translates to: NLIMGMLLYKWSTKSLQNLTGFP*VCLCTL
Trigger: TAATGTGCAAAGACAAACCCACGGAAACCCTGTTAA...ATTTTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTTATTATTTGCCGCATTaGGTCCAGAAAACAGCTTCT +
Preference number: 4 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMAYYLPH*VQKTAS
Trigger: AGAAGCTGTTTTCTGGACCCAATGCGGCAAATAATA...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
3UTR CAA 72 bp AAACCATTAAGTATTTCATTCCCAGAGGGTAACAGTTaGAGGGATTACAAACAATCTCAGGAGCTACTTAAC +
Preference number: 4 (lower is better)
Translates to: KPLSISFPEGNS*RDYKQSQELLN
Trigger: GTTAAGTAGCTCCTGAGATTGTTTGTAATCCCTCAAACTGTTACCCTCTGGGAATGAAATACTTAATGGTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR GCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAGTAGACACCATATTTTaGACAGCTTCAAGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: QYSVLQQSSLFVISVETLVDTIF*TASSSS
Trigger: AGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTAC...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR GCA 90 bp ATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGGATACATTCAATATCTaGATCAAAACCTGTTGGGTA +
Preference number: 4 (lower is better)
Translates to: IRNQAVLCVTTKQFICNQDTFNI*IKTCWV
Trigger: TACCCAACAGGTTTTGATGCAGATATTGAATGTATC...CTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTATATTATTTGCCGCATTaGGTCCAGAAAACAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QYSVLQQSSLFVISVETLYYLPH*VQKTAS
Trigger: AGAAGCTGTTTTCTGGACCCAATGCGGCAAATAATA...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CCA 90 bp ATTAACTCACAGCTAAAGCCCAGAGTAAATCTTTCAGTAACCACATACCTTTTTTGTTTCACCATAACATaGCGATCATCATTGGCAAAA +
Preference number: 4 (lower is better)
Translates to: INSQLKPRVNLSVTTYLFCFTIT*RSSLAK
Trigger: TTTTGCCAATGATGATCGCCATGTTATGGTGAAACA...AAAAAGGTATGTGGTTACTGAAAGATTTACTCTGGGCTTTAGCTGTGAGTTAAT
36% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
3UTR CAA 72 bp GGAATAACAGAATGTAACCTTATCATGGGGATGCTCTaGTACAAATGGAGTACAAAGAGCTTACAAAATGAA +
Preference number: 4 (lower is better)
Translates to: GITECNLIMGML*YKWSTKSLQNE
Trigger: TTCATTTTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACATTCTGTTATTCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
3UTR CAA 72 bp AAGAAGAACTTATTAGAAAATAGGTATCCCAGTCTCTaGATACTTCATCCAAACAAAACAAGCTTTCGACAC +
Preference number: 4 (lower is better)
Translates to: KKNLLENRYPSL*ILHPNKTSFRH
Trigger: GTGTCGAAAGCTTGTTTTGTTTGGATGAAGTATCAAGAGACTGGGATACCTATTTTCTAATAAGTTCTTCTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CTTATAGGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCCAGCTAGTGCTGCACTaGCCTTGGCCACTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: LIGEPDTLQFCHRLPPLCQLVLH*PWPLSC
Trigger: ACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTG...GCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACCTATAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GGTGAGCCGGATACTTTACAGTTTTGCCACCGCCTTCCGCCGCTCTGCCAAGCATCAGGTTTTGTGCCTTaGTTTGTTTCGTCCAGCCAA +
Preference number: 5 (lower is better)
Translates to: GEPDTLQFCHRLPPLCQASGFVP*FVSSSQ
Trigger: TTGGCTGGACGAAACAAACAAAGGCACAAAACCTGA...TGCTTGGCAGAGCGGCGGAAGGCGGTGGCAAAACTGTAAAGTATCCGGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GCATCAGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACCCACGAATGCTCCCCTaGTCAGAGTTCCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: ASAGTGLQCTALLCSALYPRMLP*SEFLFL
Trigger: GAGGAAGAGGAACTCTGACAAGGGGAGCATTCGTGG...GTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAACCACGAATGCTCCCCTaGTCAGAGTTCCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQPRMLP*SEFLFL
Trigger: GAGGAAGAGGAACTCTGACAAGGGGAGCATTCGTGG...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp CAGCAGGAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCCCTTCAAAGTCAGTGTaGGCTCTTTCGTGTTCCGAA +
Preference number: 5 (lower is better)
Translates to: QQEQDYSALHFSALLCTAPSKSV*ALSCSE
Trigger: TTCGGAACACGAAAGAGCCAACACTGACTTTGAAGG...GGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAAGCATGTGTGAGCCAGCACTTAGCTTAGAGCATCTGTaGGGTCTCGCTCACAAGGAT +
Preference number: 5 (lower is better)
Translates to: LSTLFCDQVFASMCEPALSLEHL*GLAHKD
Trigger: ATCCTTGTGAGCGAGACCCAACAGATGCTCTAAGCT...AAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS GCA 90 bp AGTTCCTCTTCCTCTGCCCCGAACTGCCTGGACTGCCGCAGATACTaGTGTATTCACAACACCTTTTGCCTGAGGAATGATCTTCTTTTT +
Preference number: 5 (lower is better)
Translates to: SSSSSAPNCLDCRRY*CIHNTFCLRNDLLF
Trigger: AAAAAGAAGATCATTCCTCAGGCAAAAGGTGTTGTGAATACAGCAGTATCTGCGGCAGTCCAGGCAGTTCGGGGCAGAGGAAGAGGAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp ACAGCTGCACCACAGACTCCTGACAGCGACATCTTTACCTTCTCTGTGTCTCAGTTTCCCCCTCAGGTTTaGTGCCTTTGTTTGTTTCGT +
Preference number: 5 (lower is better)
Translates to: TAAPQTPDSDIFTFSVSQFPPQV*CLCLFR
Trigger: ACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAA...CTGAGACACAGAGAAGGTAAAGATGTCGCTGTCAGGAGTCTGTGGTGCAGCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAAAGTGCTGCACTTGCCTaGGCCACTTTCTTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQSAALA*ATFLFG
Trigger: TCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACT...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTCAGCTAGTGCTGCACTaGCCTTGGCCACTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: RTAGFSNSTTALILLTPLQLVLH*PWPLSC
Trigger: ACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTG...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CTTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTGAACCCGAAAAGGACTCCACGAATGCTCCCCTaGTCAGAGTTCCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: LAQKAFTCCIISLNPKRTPRMLP*SEFLFL
Trigger: GAGGAAGAGGAACTCTGACAAGGGGAGCATTCGTGG...AGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CTGTCCACCCTCTTCTGTGATCAAGTCTTTGCAAGCATGTGTGAGCCAGCACTTAACAGAACCATTCTCTaGGGCAAACCATATGCAGGG +
Preference number: 5 (lower is better)
Translates to: LSTLFCDQVFASMCEPALNRTIL*GKPYAG
Trigger: CCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGTT...AAGTGCTGGCTCACACATGCTTGCAAAGACTTGATCACAGAAGAGGGTGGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CAGTGGTTCTGGGAAATACCTCCCACCTACCATCTCGCCCTACTAACCATGCTGATGATTTTAATCCATTaGCCCTTGCCTGGAACCATT +
Preference number: 5 (lower is better)
Translates to: QWFWEIPPTYHLALLTMLMILIH*PLPGTI
Trigger: AATGGTTCCAGGCAAGGGCAAATGGATTAAAATCAT...CAGCATGGTTAGTAGGGCGAGATGGTAGGTGGGAGGTATTTCCCAGAACCACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp TCAAAATGTTGGCCAAGCCTAAGTCCTACACAAAGACTGCCACTAACTGAACTAGCCTTGGCCACTTTCTaGTTTGGACCTGCACCTCTG +
Preference number: 5 (lower is better)
Translates to: SKCWPSLSPTQRLPLTELALATF*FGPAPL
Trigger: CAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGC...TAGTTCAGTTAGTGGCAGTCTTTGTGTAGGACTTAGGCTTGGCCAACATTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp AGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGCCTTGGCCACTTTCTaGTTTGGACCTGCACCTCTG +
Preference number: 5 (lower is better)
Translates to: SHYISAYFIQVIWLRRSEALATF*FGPAPL
Trigger: CAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGC...CTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAAAACAGAACCATTCTCTaGGGCAAACCATATGCAGGG +
Preference number: 5 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQNRTIL*GKPYAG
Trigger: CCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGTT...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS GCA 90 bp GCTCTAGTGGCCATCCTTTCAATGGTGCCCATGTGGGTACTCTGTTaGACAAATCACGCAGAATGCGGAGGACAATTACACATGATTTTA +
Preference number: 5 (lower is better)
Translates to: ALVAILSMVPMWVLC*TNHAECGGQLHMIL
Trigger: TAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGCCACTAGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAAGTTTTGTGCCTTTGTTaGTTTCGTCCAGCCAATCTG +
Preference number: 5 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQVLCLC*FRPANL
Trigger: CAGATTGGCTGGACGAAACAAACAAAGGCACAAAAC...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAATTTCCCCCTCAGGTTTaGTGCCTTTGTTTGTTTCGT +
Preference number: 5 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQFPPQV*CLCLFR
Trigger: ACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAA...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTCAATGTCCGGCCACCTaGATCCTTGGAATAGTTTTC +
Preference number: 5 (lower is better)
Translates to: RTAGFSNSTTALILLTPLQCPAT*ILGIVF
Trigger: GAAAACTATTCCAAGGATCAAGGTGGCCGGACATTG...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp TCAGTTAACAACTTGGCATTGGTCCTCTCCTTCTACCCTATGGAGTTTCGGGAACAATGTCCGGCCACCTaGATCCTTGGAATAGTTTTC +
Preference number: 5 (lower is better)
Translates to: SVNNLALVLSFYPMEFREQCPAT*ILGIVF
Trigger: GAAAACTATTCCAAGGATCAAGGTGGCCGGACATTG...TTCCCGAAACTCCATAGGGTAGAAGGAGAGGACCAATGCCAAGTTGTTAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACCTCATGAACGTTTCATCTTCTTGTaGGGATCTTTATCATCCCCC +
Preference number: 5 (lower is better)
Translates to: LHFSALLCTAFNRSRPHERFIFL*GSLSSP
Trigger: GGGGGATGATAAAGATCCCAACAAGAAGATGAAACG...TTCATGAGGTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CAAGAACTGGGACAATCAGAGAGCGAGTTTTTATGGGGATCCTGTTGCTGCTTTCTGCATCAAAACCTGTaGGGTATCCCATTGCCTGTA +
Preference number: 5 (lower is better)
Translates to: QELGQSESEFLWGSCCCFLHQNL*GIPLPV
Trigger: TACAGGCAATGGGATACCCAACAGGTTTTGATGCAG...AAAGCAGCAACAGGATCCCCATAAAAACTCGCTCTCTGATTGTCCCAGTTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CTCAGCTACCAATCAGTGACTGCATCAGGAACCAGGCAGTACTCTGTGTTACAATCCATCACAGGATTTTaGCCACTTGCTGTGAGGATA +
Preference number: 5 (lower is better)
Translates to: LSYQSVTASGTRQYSVLQSITGF*PLAVRI
Trigger: TATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGA...TTGTAACACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTAGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS TCA 90 bp GAAGACCCAGCACCTTCTTTATCAGTAACTGACCAGGAATACTTCTaGAAAGGCTTACTAGACGGAAGAGGGTCCATCTCCAGCACTTTA +
Preference number: 5 (lower is better)
Translates to: EDPAPSLSVTDQEYF*KGLLDGRGSISSTL
Trigger: TAAAGTGCTGGAGATGGACCCTCTTCCGTCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCTGGGTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS GCA 90 bp TCAATGGTGCCCATGTGGGTACTCTGTTGCACAAATCACGCAGAATaGGGAGGACAATTACACATGATTTTAATCCATTTGCCCTTGCCT +
Preference number: 5 (lower is better)
Translates to: SMVPMWVLCCTNHAE*GGQLHMILIHLPLP
Trigger: AGGCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GTGACAGCAACTATGTGCCCTACATGCTCACTCCCATCCATCCATCCAGCTGTTACATGGCGATCATCATaGGCAAAAGATCTAATAGAT +
Preference number: 5 (lower is better)
Translates to: VTATMCPTCSLPSIHPAVTWRSS*AKDLID
Trigger: ATCTATTAGATCTTTTGCCAATGATGATCGCCATGT...AACAGCTGGATGGATGGATGGGAGTGAGCATGTAGGGCACATAGTTGCTGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCCAATGTCCGGCCACCTaGATCCTTGGAATAGTTTTC +
Preference number: 5 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFQCPAT*ILGIVF
Trigger: GAAAACTATTCCAAGGATCAAGGTGGCCGGACATTG...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp CTTGCTCAGAAAGCCTTCACTTGCTGCATTATCTCATTGAACCCGAAAAGGACTCTGCATCAAAACCTGTaGGGTATCCCATTGCCTGTA +
Preference number: 5 (lower is better)
Translates to: LAQKAFTCCIISLNPKRTLHQNL*GIPLPV
Trigger: TACAGGCAATGGGATACCCAACAGGTTTTGATGCAG...AGTCCTTTTCGGGTTCAATGAGATAATGCAGCAAGTGAAGGCTTTCTGAGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp ACAGCTGCACCACAGACTCCTGACAGCGACATCTTTACCTTCTCTGTGTCTCAGTCTTTTTCTTATTATTaGCCGCATTGGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: TAAPQTPDSDIFTFSVSQSFSYY*PHWVQK
Trigger: TTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGA...CTGAGACACAGAGAAGGTAAAGATGTCGCTGTCAGGAGTCTGTGGTGCAGCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp AGAACAGCTGGCTTTAGCAATTCCACTACAGCTCTGATTCTGCTCACACCTCTTAGTAGACACCATATTTaGCACAGCTTCAAGTTCCTC +
Preference number: 5 (lower is better)
Translates to: RTAGFSNSTTALILLTPLSRHHI*HSFKFL
Trigger: GAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACT...AAGAGGTGTGAGCAGAATCAGAGCTGTAGTGGAATTGCTAAAGCCAGCTGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp GCCAATTTCCTGACATCTCTGCTTATAGGTGAGCCGGATACTTTACAGTTTTGCAGGGTTTCCGTGGGTTaGTCTTTGCACATTAAGACT +
Preference number: 5 (lower is better)
Translates to: ANFLTSLLIGEPDTLQFCRVSVG*SLHIKT
Trigger: AGTCTTAATGTGCAAAGACAAACCCACGGAAACCCT...GCAAAACTGTAAAGTATCCGGCTCACCTATAAGCAGAGATGTCAGGAAATTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp TATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACCCTTCAAAGTCAGTGTaGGCTCTTTCGTGTTCCGAA +
Preference number: 5 (lower is better)
Translates to: YISAYFIQVIWLRRSEENPSKSV*ALSCSE
Trigger: TTCGGAACACGAAAGAGCCAACACTGACTTTGAAGG...GTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACGAGAATAAACATGTGGGTACTCTGTaGCACAAATCACGCAGAATG +
Preference number: 5 (lower is better)
Translates to: AYFIQVIWLRRSEENENKHVGTL*HKSRRM
Trigger: CATTCTGCGTGATTTGTGCAACAGAGTACCCACATG...TTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp TATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACCATGTGGGTACTCTGTaGCACAAATCACGCAGAATG +
Preference number: 5 (lower is better)
Translates to: YISAYFIQVIWLRRSEENHVGTL*HKSRRM
Trigger: CATTCTGCGTGATTTGTGCAACAGAGTACCCACATG...GTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGCTTAGAGCATCTGTaGGGTCTCGCTCACAAGGAT +
Preference number: 5 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVISLEHL*GLAHKD
Trigger: ATCCTTGTGAGCGAGACCCAACAGATGCTCTAAGCT...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACGAGAATAAATCCATTACAAAGCGCTaGTCATGGCTTCCACCAGTT +
Preference number: 5 (lower is better)
Translates to: AYFIQVIWLRRSEENENKSITKR*SWLPPV
Trigger: AACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGA...TTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp AGGAATTCCATCAGAAAACTTAAGATACTTGCACTGATCATAGCCTCTGTTCCCTCCGTGGGTTTGTCTTaGCACATTAAGACTAGCTCC +
Preference number: 5 (lower is better)
Translates to: RNSIRKLKILALIIASVPSVGLS*HIKTSS
Trigger: GGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGA...GGGAACAGAGGCTATGATCAGTGCAAGTATCTTAAGTTTTCTGATGGAATTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp ACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGCTTAGAGCATCTGTaGGGTCTCGCTCACAAGGAT +
Preference number: 5 (lower is better)
Translates to: TAYSHYISAYFIQVIWLRSLEHL*GLAHKD
Trigger: ATCCTTGTGAGCGAGACCCAACAGATGCTCTAAGCT...CCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACAGAAGCCGACCTCATGAAGGTAATATCTTCTTTTaGCTGAGTGGTCATATAGCT +
Preference number: 5 (lower is better)
Translates to: LHFSALLCTAFNRSRPHEGNIFF*LSGHIA
Trigger: AGCTATATGACCACTCAGCAAAAAGAAGATATTACC...TTCATGAGGTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp TATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGAGAACTCCATCACAGGATTTTaGCCACTTGCTGTGAGGATA +
Preference number: 5 (lower is better)
Translates to: YISAYFIQVIWLRRSEENSITGF*PLAVRI
Trigger: TATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGA...GTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAGCCTTGGCCACTTTCTaGTTTGGACCTGCACCTCTG +
Preference number: 5 (lower is better)
Translates to: QYSVLQQSSLFVISVETLALATF*FGPAPL
Trigger: CAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGC...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp TTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCAGTGCTGCACTTGCCTaGGCCACTTTCTTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: LQSLYLSLFYTSDMATEVSAALA*ATFLFG
Trigger: TCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACT...GACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp TACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGTTTTGTGCCTTTGTTaGTTTCGTCCAGCCAATCTG +
Preference number: 5 (lower is better)
Translates to: YSHYISAYFIQVIWLRRSVLCLC*FRPANL
Trigger: CAGATTGGCTGGACGAAACAAACAAAGGCACAAAAC...GGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp TTCATCACTAAGTCATCCTGGCAAGAAAACCTTCCAACATTCCAACTGCACTTTTTTCCCCCTCAGGTTTaGTGCCTTTGTTTGTTTCGT +
Preference number: 5 (lower is better)
Translates to: FITKSSWQENLPTFQLHFFPPQV*CLCLFR
Trigger: ACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAA...AAAGTGCAGTTGGAATGTTGGAAGGTTTTCTTGCCAGGATGACTTAGTGATGAA
42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTTCCGTGGGTTTGTCTTaGCACATTAAGACTAGCTCC +
Preference number: 5 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVSVGLS*HIKTSS
Trigger: GGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGA...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp TACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCAGGGTTTCCGTGGGTTaGTCTTTGCACATTAAGACT +
Preference number: 5 (lower is better)
Translates to: YSHYISAYFIQVIWLRRSRVSVG*SLHIKT
Trigger: AGTCTTAATGTGCAAAGACAAACCCACGGAAACCCT...GGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTCCTTCAAAGTCAGTGTaGGCTCTTTCGTGTTCCGAA +
Preference number: 5 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVPSKSV*ALSCSE
Trigger: TTCGGAACACGAAAGAGCCAACACTGACTTTGAAGG...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GCATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCCGTTTCATCTTCTTGTaGGGATCTTTATCATCCCCC +
Preference number: 5 (lower is better)
Translates to: ASGTRQYSVLQQSSLFVIRFIFL*GSLSSP
Trigger: GGGGGATGATAAAGATCCCAACAAGAAGATGAAACG...GATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GAACAGGATTACAGTGCACTGCACTTCTCTGCTCTGCTTTGTACAGCCTTTAACTTTCGTTTCATCTTCTaGTTGGGATCTTTATCATCC +
Preference number: 5 (lower is better)
Translates to: EQDYSALHFSALLCTAFNFRFIF*LGSLSS
Trigger: GGATGATAAAGATCCCAACAAGAAGATGAAACGAAA...GTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp ATCAGGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGCTGCATCAAAACCTGTaGGGTATCCCATTGCCTGTA +
Preference number: 5 (lower is better)
Translates to: IRNQAVLCVTTKQFICNQLHQNL*GIPLPV
Trigger: TACAGGCAATGGGATACCCAACAGGTTTTGATGCAG...CTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTTCCATTACAAAGCGCTaGTCATGGCTTCCACCAGTT +
Preference number: 5 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVSITKR*SWLPPV
Trigger: AACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGA...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GTAGGGTATTTATTTACAACAAGGCCAATTCCATCAGGAATTCCATCAGAAAACAGTGCTGCACTTGCCTaGGCCACTTTCTTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: VGYLFTTRPIPSGIPSENSAALA*ATFLFG
Trigger: TCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACT...GTTTTCTGATGGAATTCCTGATGGAATTGGCCTTGTTGTAAATAAATACCCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTACAGCTAGTGCTGCACTaGCCTTGGCCACTTTCTTGT +
Preference number: 5 (lower is better)
Translates to: QYSVLQQSSLFVISVETLQLVLH*PWPLSC
Trigger: ACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTG...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGTTTTGTGCCTTTGTTaGTTTCGTCCAGCCAATCTG +
Preference number: 5 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVVLCLC*FRPANL
Trigger: CAGATTGGCTGGACGAAACAAACAAAGGCACAAAAC...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTTCCGTGGGTTTGTCTTaGCACATTAAGACTAGCTCC +
Preference number: 5 (lower is better)
Translates to: DHSLQSLYLSLFYTSDMASVGLS*HIKTSS
Trigger: GGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGA...AGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp TCCCTACAACGAAGGGGCTGGTATAAATTATTTCCAGGAATGAGGTACCGTTTCTTTCGTTTCATCTTCTaGTTGGGATCTTTATCATCC +
Preference number: 5 (lower is better)
Translates to: SLQRRGWYKLFPGMRYRFFRFIF*LGSLSS
Trigger: GGATGATAAAGATCCCAACAAGAAGATGAAACGAAA...GAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp ACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGTCCATCACAGGATTTTaGCCACTTGCTGTGAGGATA +
Preference number: 5 (lower is better)
Translates to: TAYSHYISAYFIQVIWLRSITGF*PLAVRI
Trigger: TATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGA...CCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp AATAATAGGAAGGACCCTTTGAATACTGAGATCACAGCTTACAGTCACTATATCTCCATTACAAAGCGCTaGTCATGGCTTCCACCAGTT +
Preference number: 5 (lower is better)
Translates to: NNRKDPLNTEITAYSHYISITKR*SWLPPV
Trigger: AACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGA...GATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGGGTCCTTCCTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GGAACCAGGCAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTAGTAGACACCATATTTaGCACAGCTTCAAGTTCCTC +
Preference number: 5 (lower is better)
Translates to: GTRQYSVLQQSSLFVISVSRHHI*HSFKFL
Trigger: GAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACT...AACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp ACAATACCAATTCTAGCAATGTTCCTTCCTCATTCCCAATCTGGCTTCTTAAATTCAGGTTTTGTGCCTTaGTTTGTTTCGTCCAGCCAA +
Preference number: 5 (lower is better)
Translates to: TIPILAMFLPHSQSGFLNSGFVP*FVSSSQ
Trigger: TTGGCTGGACGAAACAAACAAAGGCACAAAACCTGA...ATTTAAGAAGCCAGATTGGGAATGAGGAAGGAACATTGCTAGAATTGGTATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp GTTTCTGTCTTACTGATAACAGCCAATTTCCTGACATCTCTGCTTATAGGTGAGATGATTTTAATCCATTaGCCCTTGCCTGGAACCATT +
Preference number: 5 (lower is better)
Translates to: VSVLLITANFLTSLLIGEMILIH*PLPGTI
Trigger: AATGGTTCCAGGCAAGGGCAAATGGATTAAAATCAT...CTCACCTATAAGCAGAGATGTCAGGAAATTGGCTGTTATCAGTAAGACAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTACATGTGGGTACTCTGTaGCACAAATCACGCAGAATG +
Preference number: 5 (lower is better)
Translates to: QYSVLQQSSLFVISVETLHVGTL*HKSRRM
Trigger: CATTCTGCGTGATTTGTGCAACAGAGTACCCACATG...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp AGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCGAGGGTAATATCTTCTTTTaGCTGAGTGGTCATATAGCT +
Preference number: 5 (lower is better)
Translates to: SHYISAYFIQVIWLRRSEGNIFF*LSGHIA
Trigger: AGCTATATGACCACTCAGCAAAAAGAAGATATTACC...CTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp GAGATCACAGCTTACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCGTTTCATCTTCTTGTaGGGATCTTTATCATCCCCC +
Preference number: 5 (lower is better)
Translates to: EITAYSHYISAYFIQVIWRFIFL*GSLSSP
Trigger: GGGGGATGATAAAGATCCCAACAAGAAGATGAAACG...CCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS TCA 90 bp CATATTTTGCACAGCTTCAAGTTCCTCTGGAGATGGATAGATTGTTaGATGTTTCACCATAACATGGCGATCATCATTGGCAAAAGATCT +
Preference number: 5 (lower is better)
Translates to: HILHSFKFLWRWIDC*MFHHNMAIIIGKRS
Trigger: AGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp TACAGTCACTATATCTCAGCCTATTTTATACAAGTGATATGGCTACGGAGGTCCACATGGCGATCATCATaGGCAAAAGATCTAATAGAT +
Preference number: 5 (lower is better)
Translates to: YSHYISAYFIQVIWLRRSTWRSS*AKDLID
Trigger: ATCTATTAGATCTTTTGCCAATGATGATCGCCATGT...GGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTATCAGGTTTTGTGCCTTaGTTTGTTTCGTCCAGCCAA +
Preference number: 5 (lower is better)
Translates to: QYSVLQQSSLFVISVETLSGFVP*FVSSSQ
Trigger: TTGGCTGGACGAAACAAACAAAGGCACAAAACCTGA...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTAAGGGTTTCCGTGGGTTaGTCTTTGCACATTAAGACT +
Preference number: 5 (lower is better)
Translates to: QYSVLQQSSLFVISVETLRVSVG*SLHIKT
Trigger: AGTCTTAATGTGCAAAGACAAACCCACGGAAACCCT...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp TGTAACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAATGATTTTAATCCATTaGCCCTTGCCTGGAACCATT +
Preference number: 5 (lower is better)
Translates to: CNLIMGMLLYKWSTKSLQMILIH*PLPGTI
Trigger: AATGGTTCCAGGCAAGGGCAAATGGATTAAAATCAT...TTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp GTCTGTAAACTCCCTGACAAGAGCTACACACTGAAGGGTTTACATCTAGATATTTCTTTTTCTTATTATTaGCCGCATTGGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: VCKLPDKSYTLKGLHLDISFSYY*PHWVQK
Trigger: TTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGA...AATATCTAGATGTAAACCCTTCAGTGTGTAGCTCTTGTCAGGGAGTTTACAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028279.10
CDS-3UTR CAA 90 bp TGTAACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAACATGGCGATCATCATaGGCAAAAGATCTAATAGAT +
Preference number: 5 (lower is better)
Translates to: CNLIMGMLLYKWSTKSLQTWRSS*AKDLID
Trigger: ATCTATTAGATCTTTTGCCAATGATGATCGCCATGT...TTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp TGTAACCTTATCATGGGGATGCTCTTGTACAAATGGAGTACAAAGAGCTTACAAGGTAATATCTTCTTTTaGCTGAGTGGTCATATAGCT +
Preference number: 5 (lower is better)
Translates to: CNLIMGMLLYKWSTKSLQGNIFF*LSGHIA
Trigger: AGCTATATGACCACTCAGCAAAAAGAAGATATTACC...TTGTAAGCTCTTTGTACTCCATTTGTACAAGAGCATCCCCATGATAAGGTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS-3UTR CAA 90 bp AATAATAGGAAGGACCCTTTGAATACTGAGATCACAGCTTACAGTCACTATATCTTTCGTTTCATCTTCTaGTTGGGATCTTTATCATCC +
Preference number: 5 (lower is better)
Translates to: NNRKDPLNTEITAYSHYIFRFIF*LGSLSS
Trigger: GGATGATAAAGATCCCAACAAGAAGATGAAACGAAA...GATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGGGTCCTTCCTATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS CCA 90 bp CTTTACTATCTAGAATTTTCCTTAAGTTTCGTTTCATCTTCTTGTTaGGATCTTTATCATCCCCCAATCCATCTTCAAATGGCCTCTTTA +
Preference number: 5 (lower is better)
Translates to: LYYLEFSLSFVSSSC*DLYHPPIHLQMASL
Trigger: TAAAGAGGCCATTTGAAGATGGATTGGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATTCTAGATAGTAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS-3UTR CAA 90 bp CAGTACTCTGTGTTACAACAAAGCAGTTTATTTGTAATCAGTGTTGAGACTCTATCTTTTTCTTATTATTaGCCGCATTGGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: QYSVLQQSSLFVISVETLSFSYY*PHWVQK
Trigger: TTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGA...TAGAGTCTCAACACTGATTACAAATAAACTGCTTTGTTGTAACACAGAGTACTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS CCA 72 bp GGCAGCTGTGCTGTAACCATATGGGGTTCCGTAACCTaGAGCTATATATCCAGGAGCTGCTGTAGCCCCCAC +
Preference number: 6 (lower is better)
Translates to: GSCAVTIWGSVT*SYISRSCCSPH
Trigger: GTGGGGGCTACAGCAGCTCCTGGATATATAGCTCCAGGTTACGGAACCCCATATGGTTACAGCACAGCTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 72 bp CAGAAAACAGCTTCTCCAGGGCAGCTAGTGCTGCACTaGCCTTGGCCACTTTCTTGTTTGGACCTGCACCTC +
Preference number: 6 (lower is better)
Translates to: QKTASPGQLVLH*PWPLSCLDLHL
Trigger: GAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTGCCCTGGAGAAGCTGTTTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS GCA 72 bp TCCTCTGCCCCGAACTGCCTGGACTGCCGCAGATACTaGTGTATTCACAACACCTTTTGCCTGAGGAATGAT +
Preference number: 6 (lower is better)
Translates to: SSAPNCLDCRRY*CIHNTFCLRND
Trigger: ATCATTCCTCAGGCAAAAGGTGTTGTGAATACAGCAGTATCTGCGGCAGTCCAGGCAGTTCGGGGCAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS GCA 72 bp CCATTCTCTTGGGCAAACCATATGCAGGGGCAGCTGTaGTGTAACCATATGGGGTTCCGTAACCTGGAGCTA +
Preference number: 6 (lower is better)
Translates to: PFSWANHMQGQL*CNHMGFRNLEL
Trigger: TAGCTCCAGGTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAGAGAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS CAA 72 bp AACAGCTTCTCCAGGGCAGCTAGTGCTGCACTTGCCTaGGCCACTTTCTTGTTTGGACCTGCACCTCTGAAT +
Preference number: 6 (lower is better)
Translates to: NSFSRAASAALA*ATFLFGPAPLN
Trigger: ATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTGCCCTGGAGAAGCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 90 bp GGTCCAGAAAACAGCTTCTCCAGGGCAGCTAGTGCTGCACTTGCCTaGGCCACTTTCTTGTTTGGACCTGCACCTCTGAATTTCTGTCCA +
Preference number: 6 (lower is better)
Translates to: GPENSFSRAASAALA*ATFLFGPAPLNFCP
Trigger: TGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTGCCCTGGAGAAGCTGTTTTCTGGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CCA 72 bp CAAACCATATGCAGGGGCAGCTGTGCTGTAACCATATaGGGTTCCGTAACCTGGAGCTATATATCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: QTICRGSCAVTI*GSVTWSYISRS
Trigger: GCTCCTGGATATATAGCTCCAGGTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
CDS TCA 72 bp CTTAGAGCATCTGTTGGGTCTCGCTCACAAGGATCATaGAGACCAGGGCCACCAGGAAGTAGTATTCCAGAT +
Preference number: 6 (lower is better)
Translates to: LRASVGSRSQGS*RPGPPGSSIPD
Trigger: ATCTGGAATACTACTTCCTGGTGGCCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS GCA 72 bp GCCATCCTTTCAATGGTGCCCATGTGGGTACTCTGTTaGACAAATCACGCAGAATGCGGAGGACAATTACAC +
Preference number: 6 (lower is better)
Translates to: AILSMVPMWVLC*TNHAECGGQLH
Trigger: GTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CCA 72 bp TTAACCATATGCAGGGGCAGCTGTGCTGTAACCATATaGGGTTCCGTAACCTGGAGCTATATATCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: LTICRGSCAVTI*GSVTWSYISRS
Trigger: GCTCCTGGATATATAGCTCCAGGTTACGGAACCCCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183690.8
CDS CAA 72 bp GGCCATCCTTTCAATGGTGCCCATGTGGGTACTCTGTaGCACAAATCACGCAGAATGCGGAGGACAATTACA +
Preference number: 6 (lower is better)
Translates to: GHPFNGAHVGTL*HKSRRMRRTIT
Trigger: TGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 72 bp CTTTTTGCTGAGTGGTCATATAGCTTAGAGCATCTGTaGGGTCTCGCTCACAAGGATCATGAAGACCAGGGC +
Preference number: 6 (lower is better)
Translates to: LFAEWSYSLEHL*GLAHKDHEDQG
Trigger: GCCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTAAGCTATATGACCACTCAGCAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 90 bp AGCTCTAGTGGCCATCCTTTCAATGGTGCCCATGTGGGTACTCTGTaGCACAAATCACGCAGAATGCGGAGGACAATTACACATGATTTT +
Preference number: 6 (lower is better)
Translates to: SSSGHPFNGAHVGTL*HKSRRMRRTITHDF
Trigger: AAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGCCACTAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 72 bp TTCTGTCCATCTACTTCTACCTCCATTACAAAGCGCTaGTCATGGCTTCCACCAGTTTCTGAGATGAGTTCA +
Preference number: 6 (lower is better)
Translates to: FCPSTSTSITKR*SWLPPVSEMSS
Trigger: TGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS TCA 72 bp CACAGCTTCAAGTTCCTCTGGAGATGGATAGATTGTTaGATGTTTCACCATAACATGGCGATCATCATTGGC +
Preference number: 6 (lower is better)
Translates to: HSFKFLWRWIDC*MFHHNMAIIIG
Trigger: GCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS GCA 72 bp CTCCAGGTCCATATCATCTTTAATCAGCAAGCCTTTTaGAACCAAGCCAATCCTCATTACACCACACAATGT +
Preference number: 6 (lower is better)
Translates to: LQVHIIFNQQAF*NQANPHYTTQC
Trigger: ACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACCTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS GCA 72 bp CCCATGTGGGTACTCTGTTGCACAAATCACGCAGAATaGGGAGGACAATTACACATGATTTTAATCCATTTG +
Preference number: 6 (lower is better)
Translates to: PMWVLCCTNHAE*GGQLHMILIHL
Trigger: CAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS TCA 72 bp AGGTTTTGTGCCTTTGTTTGTTTCGTCCAGCCAATCTaGGACATGTTTAAGAGCACATTCAACAGTAGACAC +
Preference number: 6 (lower is better)
Translates to: RFCAFVCFVQPI*DMFKSTFNSRH
Trigger: GTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS CAA 72 bp ATTCAATATCTGCATCAAAACCTGTTGGGTATCCCATaGCCTGTAAAACCTTCACTGCCACATGAAGCTTTG +
Preference number: 6 (lower is better)
Translates to: IQYLHQNLLGIP*PVKPSLPHEAL
Trigger: CAAAGCTTCATGTGGCAGTGAAGGTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 90 bp AGGTTATCTTTAACTGTATTTAACAGGGTTTCCGTGGGTTTGTCTTaGCACATTAAGACTAGCTCCAGGTCCATATCATCTTTAATCAGC +
Preference number: 6 (lower is better)
Translates to: RLSLTVFNRVSVGLS*HIKTSSRSISSLIS
Trigger: GCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS CAA 72 bp ATGTTTAAGAGCACATTCAACAGTAGACACCATATTTaGCACAGCTTCAAGTTCCTCTGGAGATGGATAGAT +
Preference number: 6 (lower is better)
Translates to: MFKSTFNSRHHI*HSFKFLWRWID
Trigger: ATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS CAA 72 bp TTATCTTTAACTGTATTTAACAGGGTTTCCGTGGGTTaGTCTTTGCACATTAAGACTAGCTCCAGGTCCATA +
Preference number: 6 (lower is better)
Translates to: LSLTVFNRVSVG*SLHIKTSSRSI
Trigger: TATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS CAA 90 bp ATAGGAAGGTTATCTTTAACTGTATTTAACAGGGTTTCCGTGGGTTaGTCTTTGCACATTAAGACTAGCTCCAGGTCCATATCATCTTTA +
Preference number: 6 (lower is better)
Translates to: IGRLSLTVFNRVSVG*SLHIKTSSRSISSL
Trigger: TAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCTTCCTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000145808.8
ENSMUST00000155237.2
ENSMUST00000183690.8
CDS CAA 90 bp GCTTTACTATCTAGAATTTTCCTTAAGTTTCGTTTCATCTTCTTGTaGGGATCTTTATCATCCCCCAATCCATCTTCAAATGGCCTCTTT +
Preference number: 6 (lower is better)
Translates to: ALLSRIFLKFRFIFL*GSLSSPNPSSNGLF
Trigger: AAAGAGGCCATTTGAAGATGGATTGGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATTCTAGATAGTAAAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 90 bp ATTGCTTTACTATCTAGAATTTTCCTTAAGTTTCGTTTCATCTTCTaGTTGGGATCTTTATCATCCCCCAATCCATCTTCAAATGGCCTC +
Preference number: 6 (lower is better)
Translates to: IALLSRIFLKFRFIF*LGSLSSPNPSSNGL
Trigger: GAGGCCATTTGAAGATGGATTGGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATTCTAGATAGTAAAGCAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8
CDS CAA 72 bp TCTAGAATTTTCCTTAAGTTTCGTTTCATCTTCTTGTaGGGATCTTTATCATCCCCCAATCCATCTTCAAAT +
Preference number: 6 (lower is better)
Translates to: SRIFLKFRFIFL*GSLSSPNPSSN
Trigger: ATTTGAAGATGGATTGGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATTCTAGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028279.10
ENSMUST00000072186.12
ENSMUST00000183690.8