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Pregenerated sensors for STRAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030224

Ensembl transcript IDs: ENSMUST00000064910.7

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAACACCACTGCCTGAGGCTCATCAATGCCTGTGACGGGCTTCCCTaGCTCTCCCAGGAACCGCCTGTAGTGCCGCCAACTTCTAGTCAC +
Preference number: 1 (lower is better)
Translates to: EHHCLRLINACDGLP*LSQEPPVVPPTSSH
Trigger: GTGACTAGAAGTTGGCGGCACTACAGGCGGTTCCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR TCA 90 bp CAGAAAACCAAGCATGTTAAACATGGACAGGGGAACACCACTGCCTaGGGCTCATCAATGCCTGTGACGGGCTTCCCTGGCTCTCCCAGG +
Preference number: 1 (lower is better)
Translates to: QKTKHVKHGQGNTTA*GSSMPVTGFPGSPR
Trigger: CCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTCCCCTGTCCATGTTTAACATGCTTGGTTTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR CCA 90 bp AAAATGGAGATTGTAAGTTGGCTTTTCATTCCAAACAGCAGGCTATaGCACTATGTGAGCACAATCCTCCTGCCTGCACCTCAGACACTC +
Preference number: 1 (lower is better)
Translates to: KMEIVSWLFIPNSRL*HYVSTILLPAPQTL
Trigger: GAGTGTCTGAGGTGCAGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAGCCAACTTACAATCTCCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR TCA 90 bp ACTCAATTTTATTTAGGGTCAGACTCTCAGTCTAATCTTGATACATaGACAATACTGCTACAGAGCAGAAAACCAAGCATGTTAAACATG +
Preference number: 1 (lower is better)
Translates to: TQFYLGSDSQSNLDT*TILLQSRKPSMLNM
Trigger: CATGTTTAACATGCTTGGTTTTCTGCTCTGTAGCAGTATTGTTCATGTATCAAGATTAGACTGAGAGTCTGACCCTAAATAAAATTGAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR-3UTR GCA 90 bp ATCAATGCCTGTGACGGGCTTCCCTGGCTCTCCCAGGAACCGCCTGTAGTGCCGCACAATCCTCCTGCCTaGACCTCAGACACTCAGCCA +
Preference number: 2 (lower is better)
Translates to: INACDGLPWLSQEPPVVPHNPPA*TSDTQP
Trigger: TGGCTGAGTGTCTGAGGTGCAGGCAGGAGGATTGTG...CGGCACTACAGGCGGTTCCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR-3UTR GCA 90 bp GGAGATTGTAAGTTGGCTTTTCATTCCAAACAGCAGGCTATGGCACTATGTGAGTGCCCCAATATTTTCTaGCCTCTTTGCCTCAGGCAG +
Preference number: 2 (lower is better)
Translates to: GDCKLAFHSKQQAMALCECPNIF*PLCLRQ
Trigger: CTGCCTGAGGCAAAGAGGGCAGAAAATATTGGGGCA...CTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAGCCAACTTACAATCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR-3UTR TCA 90 bp CCAGTTTCATTAAATCATGTGGTTATTTGTACAACCGAGCAGATGTTAGACTACACTCACGGGCAACACTaGGTAGCTGTTCGTGCACTG +
Preference number: 2 (lower is better)
Translates to: PVSLNHVVICTTEQMLDYTHGQH*VAVRAL
Trigger: CAGTGCACGAACAGCTACTCAGTGTTGCCCGTGAGT...GTAGTCTAACATCTGCTCGGTTGTACAAATAACCACATGATTTAATGAAACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR TCA 72 bp AGGGGAACACCACTGCCTGAGGCTCATCAATGCCTGTaGCGGGCTTCCCTGGCTCTCCCAGGAACCGCCTGT +
Preference number: 3 (lower is better)
Translates to: RGTPLPEAHQCL*RASLALPGTAC
Trigger: ACAGGCGGTTCCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR GCA 72 bp CAGGCTATGGCACTATGTGAGCACAATCCTCCTGCCTaGACCTCAGACACTCAGCCATTTTCACTCACGGGC +
Preference number: 3 (lower is better)
Translates to: QAMALCEHNPPA*TSDTQPFSLTG
Trigger: GCCCGTGAGTGAAAATGGCTGAGTGTCTGAGGTGCAGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR CCA 72 bp ATTGTAAGTTGGCTTTTCATTCCAAACAGCAGGCTATaGCACTATGTGAGCACAATCCTCCTGCCTGCACCT +
Preference number: 3 (lower is better)
Translates to: IVSWLFIPNSRL*HYVSTILLPAP
Trigger: AGGTGCAGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAGCCAACTTACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR-3UTR CAA 90 bp GTGCCGCCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTATATTTTCTGCCCTCTTaGCCTCAGGCAGACAGTAAC +
Preference number: 3 (lower is better)
Translates to: VPPTSSHKLVETFLIKVLYFLPS*PQADSN
Trigger: GTTACTGTCTGCCTGAGGCAAAGAGGGCAGAAAATA...TAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGGCGGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR TCA 72 bp TATTTAGGGTCAGACTCTCAGTCTAATCTTGATACATaGACAATACTGCTACAGAGCAGAAAACCAAGCATG +
Preference number: 3 (lower is better)
Translates to: YLGSDSQSNLDT*TILLQSRKPSM
Trigger: CATGCTTGGTTTTCTGCTCTGTAGCAGTATTGTTCATGTATCAAGATTAGACTGAGAGTCTGACCCTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS-3UTR GCA 90 bp GGGGAACACCACTGCCTGAGGCTCATCAATGCCTGTGACGGGCTTCCCTGGCTCTGGCTCCAGACTTACTaGACTATGAAAAGCAATAGA +
Preference number: 4 (lower is better)
Translates to: GEHHCLRLINACDGLPWLWLQTY*TMKSNR
Trigger: TCTATTGCTTTTCATAGTGCAGTAAGTCTGGAGCCA...GAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
3UTR CAA 72 bp GAGCTAACTCATATGCCCCAATATTTTCTGCCCTCTTaGCCTCAGGCAGACAGTAACTCTGAAGGCGGATGC +
Preference number: 4 (lower is better)
Translates to: ELTHMPQYFLPS*PQADSNSEGGC
Trigger: GCATCCGCCTTCAGAGTTACTGTCTGCCTGAGGCAAAGAGGGCAGAAAATATTGGGGCATATGAGTTAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS-3UTR GCA 90 bp CTTTTCATTCCAAACAGCAGGCTATGGCACTATGTGAGCACAATCCTCCTGCCTTTTGGCTGTGAAGTCTaGAGCTGCTGTCGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: LFIPNSRLWHYVSTILLPFGCEV*SCCRSF
Trigger: AAAGCTGCGACAGCAGCTGCAGACTTCACAGCCAAA...AGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS-3UTR CCA 90 bp CTTTTCATTCCAAACAGCAGGCTATGGCACTATGTGAGCACAATCCTCCTGCCTTGGAAATCCGATCTTTaGCTTTGCCAGTTCCCCGCT +
Preference number: 4 (lower is better)
Translates to: LFIPNSRLWHYVSTILLPWKSDL*LCQFPA
Trigger: AGCGGGGAACTGGCAAAGCCAAAGATCGGATTTCCA...AGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS-3UTR TCA 90 bp GTGCCGCCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTACCCATACTTTGGCTGTaGAGTCTGCAGCTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: VPPTSSHKLVETFLIKVLPILWL*SLQLLS
Trigger: CGACAGCAGCTGCAGACTTCACAGCCAAAGTATGGG...TAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGGCGGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS-3UTR TCA 90 bp CCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTAAAGGCCCATCTTTGCAAGCGCTaGTCAGAAAGTAGCCGTAAG +
Preference number: 4 (lower is better)
Translates to: PTSSHKLVETFLIKVLKAHLCKR*SESSRK
Trigger: CTTACGGCTACTTTCTGATCAGCGCTTGCAAAGATG...GGCCTTTAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS-3UTR CAA 90 bp CCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTAAAGGCCATGGGCTTGCCATCTTaGCAAGCGCTGATCAGAAAG +
Preference number: 5 (lower is better)
Translates to: PTSSHKLVETFLIKVLKAMGLPS*QALIRK
Trigger: CTTTCTGATCAGCGCTTGCAAAGATGGCAAGCCCAT...GGCCTTTAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7
CDS CCA 72 bp CAGCTCTTCCTCTGCTGTTTCTGGAAATCCGATCTTTaGCTTTGCCAGTTCCCCGCTGTCTTCCTCAGGAAG +
Preference number: 6 (lower is better)
Translates to: QLFLCCFWKSDL*LCQFPAVFLRK
Trigger: CTTCCTGAGGAAGACAGCGGGGAACTGGCAAAGCCAAAGATCGGATTTCCAGAAACAGCAGAGGAAGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064910.7