Pregenerated sensors for STRAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030224Ensembl transcript IDs: ENSMUST00000064910.7
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR CCA 90 bp | GAACACCACTGCCTGAGGCTCATCAATGCCTGTGACGGGCTTCCCTaGCTCTCCCAGGAACCGCCTGTAGTGCCGCCAACTTCTAGTCAC | + |
Preference number: 1 (lower is better) Translates to: EHHCLRLINACDGLP*LSQEPPVVPPTSSH Trigger: GTGACTAGAAGTTGGCGGCACTACAGGCGGTTCCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR TCA 90 bp | CAGAAAACCAAGCATGTTAAACATGGACAGGGGAACACCACTGCCTaGGGCTCATCAATGCCTGTGACGGGCTTCCCTGGCTCTCCCAGG | + |
Preference number: 1 (lower is better) Translates to: QKTKHVKHGQGNTTA*GSSMPVTGFPGSPR Trigger: CCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTCCCCTGTCCATGTTTAACATGCTTGGTTTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR CCA 90 bp | AAAATGGAGATTGTAAGTTGGCTTTTCATTCCAAACAGCAGGCTATaGCACTATGTGAGCACAATCCTCCTGCCTGCACCTCAGACACTC | + |
Preference number: 1 (lower is better) Translates to: KMEIVSWLFIPNSRL*HYVSTILLPAPQTL Trigger: GAGTGTCTGAGGTGCAGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAGCCAACTTACAATCTCCATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR TCA 90 bp | ACTCAATTTTATTTAGGGTCAGACTCTCAGTCTAATCTTGATACATaGACAATACTGCTACAGAGCAGAAAACCAAGCATGTTAAACATG | + |
Preference number: 1 (lower is better) Translates to: TQFYLGSDSQSNLDT*TILLQSRKPSMLNM Trigger: CATGTTTAACATGCTTGGTTTTCTGCTCTGTAGCAGTATTGTTCATGTATCAAGATTAGACTGAGAGTCTGACCCTAAATAAAATTGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR-3UTR GCA 90 bp | ATCAATGCCTGTGACGGGCTTCCCTGGCTCTCCCAGGAACCGCCTGTAGTGCCGCACAATCCTCCTGCCTaGACCTCAGACACTCAGCCA | + |
Preference number: 2 (lower is better) Translates to: INACDGLPWLSQEPPVVPHNPPA*TSDTQP Trigger: TGGCTGAGTGTCTGAGGTGCAGGCAGGAGGATTGTG...CGGCACTACAGGCGGTTCCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR-3UTR GCA 90 bp | GGAGATTGTAAGTTGGCTTTTCATTCCAAACAGCAGGCTATGGCACTATGTGAGTGCCCCAATATTTTCTaGCCTCTTTGCCTCAGGCAG | + |
Preference number: 2 (lower is better) Translates to: GDCKLAFHSKQQAMALCECPNIF*PLCLRQ Trigger: CTGCCTGAGGCAAAGAGGGCAGAAAATATTGGGGCA...CTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAGCCAACTTACAATCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR-3UTR TCA 90 bp | CCAGTTTCATTAAATCATGTGGTTATTTGTACAACCGAGCAGATGTTAGACTACACTCACGGGCAACACTaGGTAGCTGTTCGTGCACTG | + |
Preference number: 2 (lower is better) Translates to: PVSLNHVVICTTEQMLDYTHGQH*VAVRAL Trigger: CAGTGCACGAACAGCTACTCAGTGTTGCCCGTGAGT...GTAGTCTAACATCTGCTCGGTTGTACAAATAACCACATGATTTAATGAAACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR TCA 72 bp | AGGGGAACACCACTGCCTGAGGCTCATCAATGCCTGTaGCGGGCTTCCCTGGCTCTCCCAGGAACCGCCTGT | + |
Preference number: 3 (lower is better) Translates to: RGTPLPEAHQCL*RASLALPGTAC Trigger: ACAGGCGGTTCCTGGGAGAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTCCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR GCA 72 bp | CAGGCTATGGCACTATGTGAGCACAATCCTCCTGCCTaGACCTCAGACACTCAGCCATTTTCACTCACGGGC | + |
Preference number: 3 (lower is better) Translates to: QAMALCEHNPPA*TSDTQPFSLTG Trigger: GCCCGTGAGTGAAAATGGCTGAGTGTCTGAGGTGCAGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR CCA 72 bp | ATTGTAAGTTGGCTTTTCATTCCAAACAGCAGGCTATaGCACTATGTGAGCACAATCCTCCTGCCTGCACCT | + |
Preference number: 3 (lower is better) Translates to: IVSWLFIPNSRL*HYVSTILLPAP Trigger: AGGTGCAGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAGCCAACTTACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR-3UTR CAA 90 bp | GTGCCGCCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTATATTTTCTGCCCTCTTaGCCTCAGGCAGACAGTAAC | + |
Preference number: 3 (lower is better) Translates to: VPPTSSHKLVETFLIKVLYFLPS*PQADSN Trigger: GTTACTGTCTGCCTGAGGCAAAGAGGGCAGAAAATA...TAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGGCGGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR TCA 72 bp | TATTTAGGGTCAGACTCTCAGTCTAATCTTGATACATaGACAATACTGCTACAGAGCAGAAAACCAAGCATG | + |
Preference number: 3 (lower is better) Translates to: YLGSDSQSNLDT*TILLQSRKPSM Trigger: CATGCTTGGTTTTCTGCTCTGTAGCAGTATTGTTCATGTATCAAGATTAGACTGAGAGTCTGACCCTAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS-3UTR GCA 90 bp | GGGGAACACCACTGCCTGAGGCTCATCAATGCCTGTGACGGGCTTCCCTGGCTCTGGCTCCAGACTTACTaGACTATGAAAAGCAATAGA | + |
Preference number: 4 (lower is better) Translates to: GEHHCLRLINACDGLPWLWLQTY*TMKSNR Trigger: TCTATTGCTTTTCATAGTGCAGTAAGTCTGGAGCCA...GAGCCAGGGAAGCCCGTCACAGGCATTGATGAGCCTCAGGCAGTGGTGTTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
3UTR CAA 72 bp | GAGCTAACTCATATGCCCCAATATTTTCTGCCCTCTTaGCCTCAGGCAGACAGTAACTCTGAAGGCGGATGC | + |
Preference number: 4 (lower is better) Translates to: ELTHMPQYFLPS*PQADSNSEGGC Trigger: GCATCCGCCTTCAGAGTTACTGTCTGCCTGAGGCAAAGAGGGCAGAAAATATTGGGGCATATGAGTTAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS-3UTR GCA 90 bp | CTTTTCATTCCAAACAGCAGGCTATGGCACTATGTGAGCACAATCCTCCTGCCTTTTGGCTGTGAAGTCTaGAGCTGCTGTCGCAGCTTT | + |
Preference number: 4 (lower is better) Translates to: LFIPNSRLWHYVSTILLPFGCEV*SCCRSF Trigger: AAAGCTGCGACAGCAGCTGCAGACTTCACAGCCAAA...AGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS-3UTR CCA 90 bp | CTTTTCATTCCAAACAGCAGGCTATGGCACTATGTGAGCACAATCCTCCTGCCTTGGAAATCCGATCTTTaGCTTTGCCAGTTCCCCGCT | + |
Preference number: 4 (lower is better) Translates to: LFIPNSRLWHYVSTILLPWKSDL*LCQFPA Trigger: AGCGGGGAACTGGCAAAGCCAAAGATCGGATTTCCA...AGGCAGGAGGATTGTGCTCACATAGTGCCATAGCCTGCTGTTTGGAATGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS-3UTR TCA 90 bp | GTGCCGCCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTACCCATACTTTGGCTGTaGAGTCTGCAGCTGCTGTCG | + |
Preference number: 4 (lower is better) Translates to: VPPTSSHKLVETFLIKVLPILWL*SLQLLS Trigger: CGACAGCAGCTGCAGACTTCACAGCCAAAGTATGGG...TAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGGCGGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS-3UTR TCA 90 bp | CCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTAAAGGCCCATCTTTGCAAGCGCTaGTCAGAAAGTAGCCGTAAG | + |
Preference number: 4 (lower is better) Translates to: PTSSHKLVETFLIKVLKAHLCKR*SESSRK Trigger: CTTACGGCTACTTTCTGATCAGCGCTTGCAAAGATG...GGCCTTTAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS-3UTR CAA 90 bp | CCAACTTCTAGTCACAAACTAGTCGAGACTTTTCTGATCAAAGTACTAAAGGCCATGGGCTTGCCATCTTaGCAAGCGCTGATCAGAAAG | + |
Preference number: 5 (lower is better) Translates to: PTSSHKLVETFLIKVLKAMGLPS*QALIRK Trigger: CTTTCTGATCAGCGCTTGCAAAGATGGCAAGCCCAT...GGCCTTTAGTACTTTGATCAGAAAAGTCTCGACTAGTTTGTGACTAGAAGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |
||
CDS CCA 72 bp | CAGCTCTTCCTCTGCTGTTTCTGGAAATCCGATCTTTaGCTTTGCCAGTTCCCCGCTGTCTTCCTCAGGAAG | + |
Preference number: 6 (lower is better) Translates to: QLFLCCFWKSDL*LCQFPAVFLRK Trigger: CTTCCTGAGGAAGACAGCGGGGAACTGGCAAAGCCAAAGATCGGATTTCCAGAAACAGCAGAGGAAGAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064910.7 |