RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STRA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032327

Ensembl transcript IDs: ENSMUST00000034880.10, ENSMUST00000085677.9, ENSMUST00000128021.8, ENSMUST00000128378.8, ENSMUST00000133287.8, ENSMUST00000134450.2, ENSMUST00000134955.8, ENSMUST00000136154.8, ENSMUST00000136338.8, ENSMUST00000147134.8, ENSMUST00000150820.8, ENSMUST00000167479.8, ENSMUST00000170397.8

Found 278 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGGGCTGAGGTaGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAAC +
Preference number: 1 (lower is better)
Translates to: AHTGSTFMVGGLGLR*GQLGWEIFRPFITN
Trigger: GTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAGCCCCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR TCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGAGGGGGTTGCAGACATaGATGGGAGGGAGGATGGGA +
Preference number: 2 (lower is better)
Translates to: LQSPDPTGISWLAELLLGRGLQT*MGGRMG
Trigger: TCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCT...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR GCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGGCTGGCAGAGCTGCTaGTGGGGCGAGGGGGTTGCA +
Preference number: 2 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGGWQSC*WGEGVA
Trigger: TGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCC...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGCAGGGATCAGCTGGCTaGCAGAGCTGCTGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: SGASWSLTWLQEKGREWKQGSAG*QSCCWG
Trigger: GCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTG...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTCAGGGATCAGCTGGCTaGCAGAGCTGCTGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACQGSAG*QSCCWG
Trigger: GCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTG...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAAGGGGGTTGCAGACATaGATGGGAGGGAGGATGGGA +
Preference number: 2 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGRGLQT*MGGRMG
Trigger: TCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGGAATGGGAGGGAGGATaGGAGACAGGAATGTGCCTC +
Preference number: 2 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWEWEGG*ETGMCL
Trigger: GAGGCACATTCCTGTCTCCCATCCTCCCTCCCATTC...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCGAATGGGAGGGAGGATaGGAGACAGGAATGTGCCTC +
Preference number: 2 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSEWEGG*ETGMCL
Trigger: GAGGCACATTCCTGTCTCCCATCCTCCCTCCCATTC...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAATGGGGCCAGCTGGGATaGGAGATATTCAGGCCTTTC +
Preference number: 2 (lower is better)
Translates to: QWGLLESDLAAREGAGVEWGQLG*EIFRPF
Trigger: GAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAATGGGAGGGAGGATaGGAGACAGGAATGTGCCTC +
Preference number: 2 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGEWEGG*ETGMCL
Trigger: GAGGCACATTCCTGTCTCCCATCCTCCCTCCCATTC...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTCAGGGATCAGCTGGCTaGCAGAGCTGCTGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCQGSAG*QSCCWG
Trigger: GCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTG...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR TCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAAGGGGGTTGCAGACATaGATGGGAGGGAGGATGGGA +
Preference number: 2 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERRGLQT*MGGRMG
Trigger: TCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCT...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR GCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGTGCCCACCCTTACCCTaGCTGTTCCAAGACAAAGAA +
Preference number: 2 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWCPPLP*LFQDKE
Trigger: TTCTTTGTCTTGGAACAGGCAGGGTAAGGGTGGGCA...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCGGTTGCAGACATGAATaGGAGGGAGGATGGGAGACA +
Preference number: 2 (lower is better)
Translates to: APKADGRASVRRRGLNVPGCRHE*EGGWET
Trigger: TGTCTCCCATCCTCCCTCCCATTCATGTCTGCAACC...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAAATTCCTCTAGAAGCTaGTGGTGTAGACACAGTGAC +
Preference number: 2 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKNSSRS*WCRHSD
Trigger: GTCACTGTGTCTACACCACCAGCTTCTAGAGGAATT...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CCA 90 bp GGAAGGAGGAATGTTCCTCAGAGGCACATTTATTACAGAGAGCACACTAACTTCGGTTGCAGACATGAATaGGAGGGAGGATGGGAGACA +
Preference number: 2 (lower is better)
Translates to: GRRNVPQRHIYYREHTNFGCRHE*EGGWET
Trigger: TGTCTCCCATCCTCCCTCCCATTCATGTCTGCAACC...GAAGTTAGTGTGCTCTCTGTAATAAATGTGCCTCTGAGGAACATTCCTCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR CCA 72 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATaGGAGGGAGGATGGGAGACAGGAATGTGCCTCAGC +
Preference number: 3 (lower is better)
Translates to: ELLLGRGGCRHE*EGGWETGMCLS
Trigger: GCTGAGGCACATTCCTGTCTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR-3UTR CAA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGGGAGAAAGAGAGGCCTaGCTGAGGCCCCAAAAGCTG +
Preference number: 3 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWGEREA*LRPQKL
Trigger: CAGCTTTTGGGGCCTCAGCAAGGCCTCTCTTTCTCC...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR CCA 72 bp GTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTaGTGTAGACACAGTGACTCCAGTCCCCTGATCCCA +
Preference number: 3 (lower is better)
Translates to: VDKHRPNSSRSW*CRHSDSSPLIP
Trigger: TGGGATCAGGGGACTGGAGTCACTGTGTCTACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
3UTR CCA 72 bp CTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTaGTGGTGTAGACACAGTGACTCCAGTCCCCTGATC +
Preference number: 3 (lower is better)
Translates to: LVDKHRPNSSRS*WCRHSDSSPLI
Trigger: GATCAGGGGACTGGAGTCACTGTGTCTACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGAGGCCTGAGGCTGTCCTaGGGGGCCAATGGGGGCCGG +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGGLRLS*GANGGR
Trigger: CCGGCCCCCATTGGCCCCTCAGGACAGCCTCAGGCC...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGGGCCTGAGGCTGTCCTaGGGGGCCAATGGGGGCCGG +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWEGLRLS*GANGGR
Trigger: CCGGCCCCCATTGGCCCCTCAGGACAGCCTCAGGCC...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGGAAGCCAGGCAGGCATaGAGCAGGGCAGGGGGTGCG +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGEARQA*SRAGGA
Trigger: CGCACCCCCTGCCCTGCTCCATGCCTGCCTGGCTTC...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGCAGGGGGTGCGGTaGGCTGGCAAAGGGGAATCA +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEGQGVR*AGKGES
Trigger: TGATTCCCCTTTGCCAGCTCACCGCACCCCCTGCCC...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGTCTGCGGCAGCAGGCTaGGGTCCATCTGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGSAAAG*GPSGRG
Trigger: ACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGA...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGGCCTGAGGCTGTCCTaGGGGGCCAATGGGGGCCGG +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKGLRLS*GANGGR
Trigger: CCGGCCCCCATTGGCCCCTCAGGACAGCCTCAGGCC...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGACCCCAGCGGGCCCTaGTCTGGCTGCCTTTGTGTC +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEDPSGP*SGCLCV
Trigger: GACACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTC...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGACTGGTCTGCAGCCCCTaGGAGCCTGCTCCTGTCGGG +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGLVCSP*EPAPVG
Trigger: CCCGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAG...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGCCGGGGCTGTGGACTTaGAGCATGGAGGAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEPGLWT*SMEEQG
Trigger: GCCCTGCTCCTCCATGCTCCAAGTCCACAGCCCCGG...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGTGGGGGCCGGGGCTGTaGACTTGGAGCATGGAGGAG +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGWGPGL*TWSMEE
Trigger: CTCCTCCATGCTCCAAGTCCACAGCCCCGGCCCCCA...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGAGGGCAGGGGGTGCGGTaGGCTGGCAAAGGGGAATCA +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGGQGVR*AGKGES
Trigger: TGATTCCCCTTTGCCAGCTCACCGCACCCCCTGCCC...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGGACCCCAGCGGGCCCTaGTCTGGCTGCCTTTGTGTC +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWEDPSGP*SGCLCV
Trigger: GACACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTC...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGACCCGCCCTCACCTTCTaGACAGTAGGCACCACGCTC +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGPALTF*TVGTTL
Trigger: GAGCGTGGTGCCTACTGTGCAGAAGGTGAGGGCGGG...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGGGGCCCTGCTCTGGCTaGCTTTGTGTCCTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWEGPCSG*LCVLLP
Trigger: AGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCC...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGGCCCTGCTCTGGCTaGCTTTGTGTCCTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: SWLAELLLGRGGCRHEWEGPCSG*LCVLLP
Trigger: AGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCC...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGGAAGCCAGGCAGGCATaGAGCAGGGCAGGGGGTGCG +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWEARQA*SRAGGA
Trigger: CGCACCCCCTGCCCTGCTCCATGCCTGCCTGGCTTC...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGAAGCCAGGCAGGCATaGAGCAGGGCAGGGGGTGCG +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKEARQA*SRAGGA
Trigger: CGCACCCCCTGCCCTGCTCCATGCCTGCCTGGCTTC...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCGAAGCCAGGCAGGCATaGAGCAGGGCAGGGGGTGCG +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSEARQA*SRAGGA
Trigger: CGCACCCCCTGCCCTGCTCCATGCCTGCCTGGCTTC...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGGGAGCCCAAGGCAGCTaGAGGCCGTCTGGTAGGCAC +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWGAQGS*RPSGRH
Trigger: GTGCCTACCAGACGGCCTTCAGCTGCCTTGGGCTCC...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCGACCCCAGCGGGCCCTaGTCTGGCTGCCTTTGTGTC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSDPSGP*SGCLCV
Trigger: GACACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTC...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGACTGGTCTGCAGCCCCTaGGAGCCTGCTCCTGTCGGG +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGLVCSP*EPAPVG
Trigger: CCCGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAG...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGGGGCAGGGGGTGCGGTaGGCTGGCAAAGGGGAATCA +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQGQGVR*AGKGES
Trigger: TGATTCCCCTTTGCCAGCTCACCGCACCCCCTGCCC...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGCTTCCAGGGCCCTCTTaGTGTCTCCATCTCTCCATC +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGELPGPS*CLHLSI
Trigger: GATGGAGAGATGGAGACATCAAGAGGGCCCTGGAAG...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTGGAGCCCAAGGCAGCTaGAGGCCGTCTGGTAGGCAC +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACGAQGS*RPSGRH
Trigger: GTGCCTACCAGACGGCCTTCAGCTGCCTTGGGCTCC...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGGGAGCCCAAGGCAGCTaGAGGCCGTCTGGTAGGCAC +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQGAQGS*RPSGRH
Trigger: GTGCCTACCAGACGGCCTTCAGCTGCCTTGGGCTCC...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGAGGGCACAGAAGGCTATaGCTCCTGGATGTGACTGGC +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGGHRRL*LLDVTG
Trigger: GCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCC...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGCTGCCTTTGTGTCCTaGTCCCTTGGCCATCAGGTC +
Preference number: 4 (lower is better)
Translates to: SWLAELLLGRGGCRHEWEAAFVS*SLGHQV
Trigger: GACCTGATGGCCAAGGGAGCAGGACACAAAGGCAGC...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGACCCCGGAGGAGGTCTaGCTTCCATTCTCAGATGCC +
Preference number: 4 (lower is better)
Translates to: SWLAELLLGRGGCRHEWETPEEV*LPFSDA
Trigger: GGCATCTGAGAATGGAAGCCAGACCTCCTCCGGGGT...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGGAATCACCCCCTCTaGCTGCACCTCCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVEGNHPL*LHLLSS
Trigger: GGAGCTGAGGAGGTGCAGCCAGAGGGGGTGATTCCC...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTCTGGTCTGCAGCCCCTaGGAGCCTGCTCCTGTCGGG +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVLVCSP*EPAPVG
Trigger: CCCGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAG...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGCTTGGAGGCAGGATaGGAGCAGCTATCCAACTTC +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGRLEAG*EQLSNF
Trigger: GAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCG...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCCGGTTGGTCAGCTCTaGGTATCCATGGTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGPVGQL*VSMVSP
Trigger: AGGACTCACCATGGATACCCAGAGCTGACCAACCGG...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGCCGGTTGGTCAGCTCTaGGTATCCATGGTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEPVGQL*VSMVSP
Trigger: AGGACTCACCATGGATACCCAGAGCTGACCAACCGG...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGTGTGGACTTGGAGCATaGAGGAGCAGGGCACAGAAG +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGECGLGA*RSRAQK
Trigger: CTTCTGTGCCCTGCTCCTCCATGCTCCAAGTCCACA...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGCCGGGGCTGTGGACTTaGAGCATGGAGGAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGPGLWT*SMEEQG
Trigger: GCCCTGCTCCTCCATGCTCCAAGTCCACAGCCCCGG...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCCCGGGGCTGTGGACTTaGAGCATGGAGGAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: APKADGRASVRRRGLNVPPGLWT*SMEEQG
Trigger: GCCCTGCTCCTCCATGCTCCAAGTCCACAGCCCCGG...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGTCCACAGTCCATAGGTaGTGCTTCACCAGCTCTACC +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGSTVHR*CFTSST
Trigger: GGTAGAGCTGGTGAAGCATCACCTATGGACTGTGGA...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGACAAGACCAGAGCTaGGATGTAGCATGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEGQDQS*DVACFH
Trigger: GTGGAAGCATGCTACATCTCAGCTCTGGTCTTGTCC...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGAGAAGCTCATCCAGCTaGCTATGGCTTGGCGAGAGG +
Preference number: 4 (lower is better)
Translates to: SWLAELLLGRGGCRHEWERSSSS*LWLGER
Trigger: CCTCTCGCCAAGCCATAGTCAGCTGGATGAGCTTCT...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTGGAGCCCAAGGCAGCTaGAGGCCGTCTGGTAGGCAC +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVGAQGS*RPSGRH
Trigger: GTGCCTACCAGACGGCCTTCAGCTGCCTTGGGCTCC...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGCTCCCACCAGCATGTTaGTGGGGAAGAGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGELPPAC*WGRGEK
Trigger: CTTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAG...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGTAGAGAGAAGAGATaGGCACCCGCCAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGCREKR*APARQP
Trigger: TGGCTGTCTGGCGGGTGCTCATCTCTTCTCTCTACA...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTTCTGCGGCAGCAGGCTaGGGTCCATCTGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVSAAAG*GPSGRG
Trigger: ACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGA...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGAGCTCTACCACCTCCTaGCTGTCTTCAGAGAGCACG +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWESSTTS*LSSEST
Trigger: CGTGCTCTCTGAAGACAGGCAGGAGGTGGTAGAGCT...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGAAGAAGAAGATGACCTaGTGCACCAGGAGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEKKKMT*CTRSPR
Trigger: CCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTTCTT...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGACTGGTCTGCAGCCCCTaGGAGCCTGCTCCTGTCGGG +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERLVCSP*EPAPVG
Trigger: CCCGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAG...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGACTTCTCGGAGTAGCTaGTCTGCAGCCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKTSRSS*SAAPGS
Trigger: GCTCCCAGGGGCTGCAGACCAGCTACTCCGAGAAGT...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAACTTCTCGGAGTAGCTaGTCTGCAGCCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVETSRSS*SAAPGS
Trigger: GCTCCCAGGGGCTGCAGACCAGCTACTCCGAGAAGT...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCACTTCTCGGAGTAGCTaGTCTGCAGCCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSTSRSS*SAAPGS
Trigger: GCTCCCAGGGGCTGCAGACCAGCTACTCCGAGAAGT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGCGCTTGGAGGCAGGATaGGAGCAGCTATCCAACTTC +
Preference number: 4 (lower is better)
Translates to: SWLAELLLGRGGCRHEWERLEAG*EQLSNF
Trigger: GAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCG...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCACAGGAGGCTACGCTTaGAGGCAGGATGGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSTGGYA*RQDGSS
Trigger: GCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTTGGGGGCCGGGGCTGTaGACTTGGAGCATGGAGGAG +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVWGPGL*TWSMEE
Trigger: CTCCTCCATGCTCCAAGTCCACAGCCCCGGCCCCCA...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGTGGCCATCAGGTCCTTaGTCTGTAGCAACTGCATCC +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEWPSGP*SVATAS
Trigger: GGATGCAGTTGCTACAGACCAAGGACCTGATGGCCA...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGCAGGAGCAGGAAGGTTaGTGCGCAGGACAAGACCAG +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKQEQEG*CAGQDQ
Trigger: CTGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTG...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAACAGGAGCAGGAAGGTTaGTGCGCAGGACAAGACCAG +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVEQEQEG*CAGQDQ
Trigger: CTGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTG...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTCCCCAAGAAGAAGATaGCCTGCTGCACCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSSPRRR*PAAPGA
Trigger: GGCTCCTGGTGCAGCAGGTCATCTTCTTCTTGGGGA...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGTCCCCAAGAAGAAGATaGCCTGCTGCACCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWSPRRR*PAAPGA
Trigger: GGCTCCTGGTGCAGCAGGTCATCTTCTTCTTGGGGA...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGCTCCCACCAGCATGTTaGTGGGGAAGAGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWELPPAC*WGRGEK
Trigger: CTTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAG...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATATGACTCCTGGATGTaGCTGGCTGGCCTCAATCCT +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGYDSWM*LAGLNP
Trigger: AGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATA...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGGGCACAGAAGGCTATaGCTCCTGGATGTGACTGGC +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKGHRRL*LLDVTG
Trigger: GCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCC...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCATCACCCCCTCTGGCTaGACCTCCTCAGCTCCTAGA +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSITPSG*TSSAPR
Trigger: TCTAGGAGCTGAGGAGGTGCAGCCAGAGGGGGTGAT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGAAGAAGAAGATGACCTaGTGCACCAGGAGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: SWLAELLLGRGGCRHEWEKKKMT*CTRSPR
Trigger: CCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTTCTT...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGGCTGCCTTTGTGTCCTaGTCCCTTGGCCATCAGGTC +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWAAFVS*SLGHQV
Trigger: GACCTGATGGCCAAGGGAGCAGGACACAAAGGCAGC...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTGGGCCCTGCTCTGGCTaGCTTTGTGTCCTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVGPCSG*LCVLLP
Trigger: AGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCC...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCACCCCGGAGGAGGTCTaGCTTCCATTCTCAGATGCC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSTPEEV*LPFSDA
Trigger: GGCATCTGAGAATGGAAGCCAGACCTCCTCCGGGGT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGACCCCGGAGGAGGTCTaGCTTCCATTCTCAGATGCC +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKTPEEV*LPFSDA
Trigger: GGCATCTGAGAATGGAAGCCAGACCTCCTCCGGGGT...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGAATAGGAATGCAGCTTaGTGCCCTGCCGAAGCACAA +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGENRNAA*CPAEAQ
Trigger: TTGTGCTTCGGCAGGGCACCAAGCTGCATTCCTATT...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGACTTCTCGGAGTAGCTaGTCTGCAGCCCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQTSRSS*SAAPGS
Trigger: GCTCCCAGGGGCTGCAGACCAGCTACTCCGAGAAGT...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAACAGGAGGCTACGCTTaGAGGCAGGATGGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGTGGYA*RQDGSS
Trigger: GCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGACAGGAGGCTACGCTTaGAGGCAGGATGGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQTGGYA*RQDGSS
Trigger: GCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGT...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGCTTCCAGGGCCCTCTTaGTGTCTCCATCTCTCCATC +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKLPGPS*CLHLSI
Trigger: GATGGAGAGATGGAGACATCAAGAGGGCCCTGGAAG...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGCTTTCTGCCAGACCTaGACACCAAAGTGGGCCCAA +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVEAFCQT*TPKWAQ
Trigger: TTGGGCCCACTTTGGTGTTCAGGTCTGGCAGAAAGC...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCAGGAGACATCTGTGTTaGTCCCCGCCCTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSRRHLC*SPPSPS
Trigger: AGAAGGTGAGGGCGGGGATCAACACAGATGTCTCCT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCCAGGAGCAGGAAGGTTaGTGCGCAGGACAAGACCAG +
Preference number: 4 (lower is better)
Translates to: APKADGRASVRRRGLNVPQEQEG*CAGQDQ
Trigger: CTGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTG...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGAGAAGCTCATCCAGCTaGCTATGGCTTGGCGAGAGG +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKRSSSS*LWLGER
Trigger: CCTCTCGCCAAGCCATAGTCAGCTGGATGAGCTTCT...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGTCCCCAAGAAGAAGATaGCCTGCTGCACCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGSPRRR*PAAPGA
Trigger: GGCTCCTGGTGCAGCAGGTCATCTTCTTCTTGGGGA...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGGGCACAGAAGGCTATaGCTCCTGGATGTGACTGGC +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGGHRRL*LLDVTG
Trigger: GCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCC...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGATCACCCCCTCTGGCTaGACCTCCTCAGCTCCTAGA +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQITPSG*TSSAPR
Trigger: TCTAGGAGCTGAGGAGGTGCAGCCAGAGGGGGTGAT...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGATCACCCCCTCTGGCTaGACCTCCTCAGCTCCTAGA +
Preference number: 4 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGITPSG*TSSAPR
Trigger: TCTAGGAGCTGAGGAGGTGCAGCCAGAGGGGGTGAT...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAAGCTCTACCACCTCCTaGCTGTCTTCAGAGAGCACG +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVESSTTS*LSSEST
Trigger: CGTGCTCTCTGAAGACAGGCAGGAGGTGGTAGAGCT...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGAAGAAGATGACCTGCTaGACCAGGAGCCCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKKKMTC*TRSPRQ
Trigger: CTGCCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTT...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGCTGCCTTTGTGTCCTaGTCCCTTGGCCATCAGGTC +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGAAFVS*SLGHQV
Trigger: GACCTGATGGCCAAGGGAGCAGGACACAAAGGCAGC...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGGGCCCTGCTCTGGCTaGCTTTGTGTCCTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKGPCSG*LCVLLP
Trigger: AGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCC...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGAGTTCAGGAAAGGCAGTaGGTTCTCATCAGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGVQERQ*VLIREQ
Trigger: TTGCTCCCTGATGAGAACCCACTGCCTTTCCTGAAC...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGAAATAGGAATGCAGCTTaGTGCCCTGCCGAAGCACAA +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGNRNAA*CPAEAQ
Trigger: TTGTGCTTCGGCAGGGCACCAAGCTGCATTCCTATT...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGAGCGGAATCCTGGCTGTaGAGTGTAGATGGAATGATG +
Preference number: 4 (lower is better)
Translates to: LAELLLGRGGCRHEWEGGAESWL*SVDGMM
Trigger: CATCATTCCATCTACACTCCACAGCCAGGATTCCGC...TCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGTCAGGAAGATCCAGTTaGCTGCTATGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LQSPDPTGISWLAELLLGSGRSS*LLCSAG
Trigger: TCCTGCAGAACATAGCAGCCAACTGGATCTTCCTGA...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGAGAGCATGCGCCGGTTaGTCAGCTCTGGGTATCCAT +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWRACAG*SALGIH
Trigger: ATGGATACCCAGAGCTGACCAACCGGCGCATGCTCT...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGAGAGCATGCGCCGGTTaGTCAGCTCTGGGTATCCAT +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKRACAG*SALGIH
Trigger: ATGGATACCCAGAGCTGACCAACCGGCGCATGCTCT...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAATGTGTCCTGCTCCCTTaGCCATCAGGTCCTTGGTCT +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVECVLLP*PSGPWS
Trigger: AGACCAAGGACCTGATGGCCAAGGGAGCAGGACACA...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGTGTGTCCTGCTCCCTTaGCCATCAGGTCCTTGGTCT +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKCVLLP*PSGPWS
Trigger: AGACCAAGGACCTGATGGCCAAGGGAGCAGGACACA...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTGGGCAGGGGGTGCGGTaGGCTGGCAAAGGGGAATCA +
Preference number: 4 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCGQGVR*AGKGES
Trigger: TGATTCCCCTTTGCCAGCTCACCGCACCCCCTGCCC...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTCTTCCAGGGCCCTCTTaGTGTCTCCATCTCTCCATC +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACLPGPS*CLHLSI
Trigger: GATGGAGAGATGGAGACATCAAGAGGGCCCTGGAAG...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGCTTTCTGCCAGACCTaGACACCAAAGTGGGCCCAA +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGAFCQT*TPKWAQ
Trigger: TTGGGCCCACTTTGGTGTTCAGGTCTGGCAGAAAGC...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAAGGAGACATCTGTGTTaGTCCCCGCCCTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGRRHLC*SPPSPS
Trigger: AGAAGGTGAGGGCGGGGATCAACACAGATGTCTCCT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTAGGAGACATCTGTGTTaGTCCCCGCCCTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACRRHLC*SPPSPS
Trigger: AGAAGGTGAGGGCGGGGATCAACACAGATGTCTCCT...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGAGGAGACATCTGTGTTaGTCCCCGCCCTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGRRHLC*SPPSPS
Trigger: AGAAGGTGAGGGCGGGGATCAACACAGATGTCTCCT...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGGACAAGACCAGAGCTaGGATGTAGCATGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKGQDQS*DVACFH
Trigger: GTGGAAGCATGCTACATCTCAGCTCTGGTCTTGTCC...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAAGAAGCTCATCCAGCTaGCTATGGCTTGGCGAGAGG +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGRSSSS*LWLGER
Trigger: CCTCTCGCCAAGCCATAGTCAGCTGGATGAGCTTCT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCTGTAGAGAGAAGAGATaGGCACCCGCCAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: APKADGRASVRRRGLNVPCREKR*APARQP
Trigger: TGGCTGTCTGGCGGGTGCTCATCTCTTCTCTCTACA...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTTCTGCGGCAGCAGGCTaGGGTCCATCTGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCSAAAG*GPSGRG
Trigger: ACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGA...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCAGCTCTACCACCTCCTaGCTGTCTTCAGAGAGCACG +
Preference number: 4 (lower is better)
Translates to: APKADGRASVRRRGLNVPSSTTS*LSSEST
Trigger: CGTGCTCTCTGAAGACAGGCAGGAGGTGGTAGAGCT...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAAAGAAGATGACCTGCTaGACCAGGAGCCCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGKKMTC*TRSPRQ
Trigger: CTGCCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCAAGAAGAAGATGACCTaGTGCACCAGGAGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSKKKMT*CTRSPR
Trigger: CCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTTCTT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGCTGCACAAGTTGTACTaGATACCAAAGGCTCAGGAA +
Preference number: 4 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGELHKLY*IPKAQE
Trigger: TTCCTGAGCCTTTGGTATCCAGTACAACTTGTGCAG...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGCTGTGGAGTGTAGATaGAATGATGGGAGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVEAVECR*NDGRRP
Trigger: GGGCCTTCTCCCATCATTCCATCTACACTCCACAGC...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGCTGTTCCTGTCAGGGTaGCCGAGATCACCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQLFLSG*PRSPAS
Trigger: TGAAGCTGGTGATCTCGGCCACCCTGACAGGAACAG...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGTCAGGAAGATCCAGTTaGCTGCTATGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWESGRSS*LLCSAG
Trigger: TCCTGCAGAACATAGCAGCCAACTGGATCTTCCTGA...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAAGAGCATGCGCCGGTTaGTCAGCTCTGGGTATCCAT +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGRACAG*SALGIH
Trigger: ATGGATACCCAGAGCTGACCAACCGGCGCATGCTCT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGAGAGCATGCGCCGGTTaGTCAGCTCTGGGTATCCAT +
Preference number: 4 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGRACAG*SALGIH
Trigger: ATGGATACCCAGAGCTGACCAACCGGCGCATGCTCT...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCTGTGGACTTGGAGCATaGAGGAGCAGGGCACAGAAG +
Preference number: 4 (lower is better)
Translates to: APKADGRASVRRRGLNVPCGLGA*RSRAQK
Trigger: CTTCTGTGCCCTGCTCCTCCATGCTCCAAGTCCACA...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGTGTGGACTTGGAGCATaGAGGAGCAGGGCACAGAAG +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQCGLGA*RSRAQK
Trigger: CTTCTGTGCCCTGCTCCTCCATGCTCCAAGTCCACA...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGGCCATCAGGTCCTTaGTCTGTAGCAACTGCATCC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSWPSGP*SVATAS
Trigger: GGATGCAGTTGCTACAGACCAAGGACCTGATGGCCA...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCTGTGTCCTGCTCCCTTaGCCATCAGGTCCTTGGTCT +
Preference number: 4 (lower is better)
Translates to: APKADGRASVRRRGLNVPCVLLP*PSGPWS
Trigger: AGACCAAGGACCTGATGGCCAAGGGAGCAGGACACA...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGTGTGTCCTGCTCCCTTaGCCATCAGGTCCTTGGTCT +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQCVLLP*PSGPWS
Trigger: AGACCAAGGACCTGATGGCCAAGGGAGCAGGACACA...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGACTTGATGCTGCAGTaGGGTTCAGGAAAGGCAGTG +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGDLMLQ*GSGKAV
Trigger: CACTGCCTTTCCTGAACCTCACTGCAGCATCAAGTC...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGATCCACAGTCCATAGGTaGTGCTTCACCAGCTCTACC +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGSTVHR*CFTSST
Trigger: GGTAGAGCTGGTGAAGCATCACCTATGGACTGTGGA...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTCCACAGTCCATAGGTaGTGCTTCACCAGCTCTACC +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACSTVHR*CFTSST
Trigger: GGTAGAGCTGGTGAAGCATCACCTATGGACTGTGGA...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAACAGGAGCAGGAAGGTTaGTGCGCAGGACAAGACCAG +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKQEQEG*CAGQDQ
Trigger: CTGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTG...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGCTCCCACCAGCATGTTaGTGGGGAAGAGGAGAAAAG +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQLPPAC*WGRGEK
Trigger: CTTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAG...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGATATGACTCCTGGATGTaGCTGGCTGGCCTCAATCCT +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGYDSWM*LAGLNP
Trigger: AGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATA...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGTATGACTCCTGGATGTaGCTGGCTGGCCTCAATCCT +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQYDSWM*LAGLNP
Trigger: AGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATA...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GGAAGGAGGAATGTTCCTCAGAGGCACATTTATTACAGAGAGCACACTAACTTCGGCCTGAGGCTGTCCTaGGGGGCCAATGGGGGCCGG +
Preference number: 4 (lower is better)
Translates to: GRRNVPQRHIYYREHTNFGLRLS*GANGGR
Trigger: CCGGCCCCCATTGGCCCCTCAGGACAGCCTCAGGCC...GAAGTTAGTGTGCTCTCTGTAATAAATGTGCCTCTGAGGAACATTCCTCCTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAATCACCCCCTCTGGCTaGACCTCCTCAGCTCCTAGA +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERITPSG*TSSAPR
Trigger: TCTAGGAGCTGAGGAGGTGCAGCCAGAGGGGGTGAT...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCAGGAGGTTCCTGCCATaGAGTAAAGGCACAAACACC +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSRRFLP*SKGTNT
Trigger: GGTGTTTGTGCCTTTACTGCATGGCAGGAACCTCCT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGAATAGGAATGCAGCTTaGTGCCCTGCCGAAGCACAA +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWNRNAA*CPAEAQ
Trigger: TTGTGCTTCGGCAGGGCACCAAGCTGCATTCCTATT...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCAATAGGAATGCAGCTTaGTGCCCTGCCGAAGCACAA +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSNRNAA*CPAEAQ
Trigger: TTGTGCTTCGGCAGGGCACCAAGCTGCATTCCTATT...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGCTGCACAAGTTGTACTaGATACCAAAGGCTCAGGAA +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWELHKLY*IPKAQE
Trigger: TTCCTGAGCCTTTGGTATCCAGTACAACTTGTGCAG...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTCGCTTGGAGGCAGGATaGGAGCAGCTATCCAACTTC +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVRLEAG*EQLSNF
Trigger: GAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCG...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTGCTGTGGAGTGTAGATaGAATGATGGGAGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACAVECR*NDGRRP
Trigger: GGGCCTTCTCCCATCATTCCATCTACACTCCACAGC...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCGCGGAATCCTGGCTGTaGAGTGTAGATGGAATGATG +
Preference number: 4 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSAESWL*SVDGMM
Trigger: CATCATTCCATCTACACTCCACAGCCAGGATTCCGC...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTCTGTTCCTGTCAGGGTaGCCGAGATCACCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVLFLSG*PRSPAS
Trigger: TGAAGCTGGTGATCTCGGCCACCCTGACAGGAACAG...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGTGGCCATCAGGTCCTTaGTCTGTAGCAACTGCATCC +
Preference number: 4 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGWPSGP*SVATAS
Trigger: GGATGCAGTTGCTACAGACCAAGGACCTGATGGCCA...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGTGGCCATCAGGTCCTTaGTCTGTAGCAACTGCATCC +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQWPSGP*SVATAS
Trigger: GGATGCAGTTGCTACAGACCAAGGACCTGATGGCCA...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAACTTCCAGGGCCCTCTTaGTGTCTCCATCTCTCCATC +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKLPGPS*CLHLSI
Trigger: GATGGAGAGATGGAGACATCAAGAGGGCCCTGGAAG...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAGCTTTCTGCCAGACCTaGACACCAAAGTGGGCCCAA +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERAFCQT*TPKWAQ
Trigger: TTGGGCCCACTTTGGTGTTCAGGTCTGGCAGAAAGC...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTGGACAAGACCAGAGCTaGGATGTAGCATGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVGQDQS*DVACFH
Trigger: GTGGAAGCATGCTACATCTCAGCTCTGGTCTTGTCC...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAAGAAGCTCATCCAGCTaGCTATGGCTTGGCGAGAGG +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKRSSSS*LWLGER
Trigger: CCTCTCGCCAAGCCATAGTCAGCTGGATGAGCTTCT...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAATGTAGAGAGAAGAGATaGGCACCCGCCAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKCREKR*APARQP
Trigger: TGGCTGTCTGGCGGGTGCTCATCTCTTCTCTCTACA...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGATCTGCGGCAGCAGGCTaGGGTCCATCTGGCCGAGGT +
Preference number: 4 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRSAAAG*GPSGRG
Trigger: ACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGA...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAAAGAAGATGACCTGCTaGACCAGGAGCCCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERKKMTC*TRSPRQ
Trigger: CTGCCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTT...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTAGGAGGTTCCTGCCATaGAGTAAAGGCACAAACACC +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACRRFLP*SKGTNT
Trigger: GGTGTTTGTGCCTTTACTGCATGGCAGGAACCTCCT...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAAGGAGGTTCCTGCCATaGAGTAAAGGCACAAACACC +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGRRFLP*SKGTNT
Trigger: GGTGTTTGTGCCTTTACTGCATGGCAGGAACCTCCT...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGTTGGTCTGTAGCAACTaGATCCCTTCTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWELVCSN*IPSSSS
Trigger: AGAAGAAGAAGAAGGGATGCAGTTGCTACAGACCAA...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGTTCAGGAAAGGCAGTaGGTTCTCATCAGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGVQERQ*VLIREQ
Trigger: TTGCTCCCTGATGAGAACCCACTGCCTTTCCTGAAC...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAACGCTTGGAGGCAGGATaGGAGCAGCTATCCAACTTC +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKRLEAG*EQLSNF
Trigger: GAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCG...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGGCGGAATCCTGGCTGTaGAGTGTAGATGGAATGATG +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQAESWL*SVDGMM
Trigger: CATCATTCCATCTACACTCCACAGCCAGGATTCCGC...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGACTGTTCCTGTCAGGGTaGCCGAGATCACCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERLFLSG*PRSPAS
Trigger: TGAAGCTGGTGATCTCGGCCACCCTGACAGGAACAG...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TCTGGGGCAGAGAGGAAGCCCACACAGGTTCCACTTTCATGGTGGGAGGGCTGGTCAGGAAGATCCAGTTaGCTGCTATGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SGAERKPTQVPLSWWEGWSGRSS*LLCSAG
Trigger: TCCTGCAGAACATAGCAGCCAACTGGATCTTCCTGA...CCAGCCCTCCCACCATGAAAGTGGAACCTGTGTGGGCTTCCTCTCTGCCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAACCGGTTGGTCAGCTCTaGGTATCCATGGTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKPVGQL*VSMVSP
Trigger: AGGACTCACCATGGATACCCAGAGCTGACCAACCGG...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAATGTGGACTTGGAGCATaGAGGAGCAGGGCACAGAAG +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKCGLGA*RSRAQK
Trigger: CTTCTGTGCCCTGCTCCTCCATGCTCCAAGTCCACA...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGATGGGGGCCGGGGCTGTaGACTTGGAGCATGGAGGAG +
Preference number: 4 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRWGPGL*TWSMEE
Trigger: CTCCTCCATGCTCCAAGTCCACAGCCCCGGCCCCCA...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGGACAAGACCAGAGCTaGGATGTAGCATGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKGQDQS*DVACFH
Trigger: GTGGAAGCATGCTACATCTCAGCTCTGGTCTTGTCC...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAAAGAAGAAGATGACCTaGTGCACCAGGAGCCCAAGG +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERKKKMT*CTRSPR
Trigger: CCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTTCTT...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTGCTGCCTTTGTGTCCTaGTCCCTTGGCCATCAGGTC +
Preference number: 4 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCAAFVS*SLGHQV
Trigger: GACCTGATGGCCAAGGGAGCAGGACACAAAGGCAGC...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTGTTCAGGAAAGGCAGTaGGTTCTCATCAGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVVQERQ*VLIREQ
Trigger: TTGCTCCCTGATGAGAACCCACTGCCTTTCCTGAAC...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGCTATCCAACTTCTTTaGGCAGAGAAGAGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: SGASWSLTWLQEKGREWKAIQLL*AEKSSQ
Trigger: CTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGC...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGCTATCCAACTTCTTTaGGCAGAGAAGAGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: QWGLLESDLAAREGAGVEAIQLL*AEKSSQ
Trigger: CTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGC...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAGCTGTGGAGTGTAGATaGAATGATGGGAGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERAVECR*NDGRRP
Trigger: GGGCCTTCTCCCATCATTCCATCTACACTCCACAGC...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGCTGTGGAGTGTAGATaGAATGATGGGAGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKAVECR*NDGRRP
Trigger: GGGCCTTCTCCCATCATTCCATCTACACTCCACAGC...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAAGGAGGTTCCTGCCATaGAGTAAAGGCACAAACACC +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKRRFLP*SKGTNT
Trigger: GGTGTTTGTGCCTTTACTGCATGGCAGGAACCTCCT...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGTTCAGGAAAGGCAGTaGGTTCTCATCAGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKVQERQ*VLIREQ
Trigger: TTGCTCCCTGATGAGAACCCACTGCCTTTCCTGAAC...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTTCAGGAAGATCCAGTTaGCTGCTATGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVSGRSS*LLCSAG
Trigger: TCCTGCAGAACATAGCAGCCAACTGGATCTTCCTGA...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTATCCCCAAGAAGAAGATaGCCTGCTGCACCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLSPRRR*PAAPGA
Trigger: GGCTCCTGGTGCAGCAGGTCATCTTCTTCTTGGGGA...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTTATGACTCCTGGATGTaGCTGGCTGGCCTCAATCCT +
Preference number: 4 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCYDSWM*LAGLNP
Trigger: AGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATA...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTAGGGCACAGAAGGCTATaGCTCCTGGATGTGACTGGC +
Preference number: 4 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLGHRRL*LLDVTG
Trigger: GCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCC...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp TGTAGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGTTGGTCTGTAGCAACTaGATCCCTTCTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: CRHSDSSPLIPQGSAGWQLVCSN*IPSSSS
Trigger: AGAAGAAGAAGAAGGGATGCAGTTGCTACAGACCAA...CTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTTGGTCTGTAGCAACTaGATCCCTTCTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACLVCSN*IPSSSS
Trigger: AGAAGAAGAAGAAGGGATGCAGTTGCTACAGACCAA...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGATTGGTCTGTAGCAACTaGATCCCTTCTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: EVGPAGMGDIQAFHHQRGLVCSN*IPSSSS
Trigger: AGAAGAAGAAGAAGGGATGCAGTTGCTACAGACCAA...TCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTAACCCCGGAGGAGGTCTaGCTTCCATTCTCAGATGCC +
Preference number: 4 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLTPEEV*LPFSDA
Trigger: GGCATCTGAGAATGGAAGCCAGACCTCCTCCGGGGT...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAGCTATCCAACTTCTTTaGGCAGAGAAGAGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERAIQLL*AEKSSQ
Trigger: CTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGC...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GGAAGGAGGAATGTTCCTCAGAGGCACATTTATTACAGAGAGCACACTAACTTCACAGGAGGCTACGCTTaGAGGCAGGATGGGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GRRNVPQRHIYYREHTNFTGGYA*RQDGSS
Trigger: GCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGT...GAAGTTAGTGTGCTCTCTGTAATAAATGTGCCTCTGAGGAACATTCCTCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGACCGGTTGGTCAGCTCTaGGTATCCATGGTGAGTCCT +
Preference number: 4 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRPVGQL*VSMVSP
Trigger: AGGACTCACCATGGATACCCAGAGCTGACCAACCGG...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTATCCACAGTCCATAGGTaGTGCTTCACCAGCTCTACC +
Preference number: 4 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLSTVHR*CFTSST
Trigger: GGTAGAGCTGGTGAAGCATCACCTATGGACTGTGGA...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR TCA 90 bp GGAAGGAGGAATGTTCCTCAGAGGCACATTTATTACAGAGAGCACACTAACTTCTGTAGAGAGAAGAGATaGGCACCCGCCAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: GRRNVPQRHIYYREHTNFCREKR*APARQP
Trigger: TGGCTGTCTGGCGGGTGCTCATCTCTTCTCTCTACA...GAAGTTAGTGTGCTCTCTGTAATAAATGTGCCTCTGAGGAACATTCCTCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR GCA 90 bp GGAAGGAGGAATGTTCCTCAGAGGCACATTTATTACAGAGAGCACACTAACTTCAAGAAGATGACCTGCTaGACCAGGAGCCCAAGGCAG +
Preference number: 4 (lower is better)
Translates to: GRRNVPQRHIYYREHTNFKKMTC*TRSPRQ
Trigger: CTGCCTTGGGCTCCTGGTGCAGCAGGTCATCTTCTT...GAAGTTAGTGTGCTCTCTGTAATAAATGTGCCTCTGAGGAACATTCCTCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTCTGCACAAGTTGTACTaGATACCAAAGGCTCAGGAA +
Preference number: 4 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCLHKLY*IPKAQE
Trigger: TTCCTGAGCCTTTGGTATCCAGTACAACTTGTGCAG...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTAGCGGAATCCTGGCTGTaGAGTGTAGATGGAATGATG +
Preference number: 4 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLAESWL*SVDGMM
Trigger: CATCATTCCATCTACACTCCACAGCCAGGATTCCGC...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CCA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGACTGCACAAGTTGTACTaGATACCAAAGGCTCAGGAA +
Preference number: 4 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRLHKLY*IPKAQE
Trigger: TTCCTGAGCCTTTGGTATCCAGTACAACTTGTGCAG...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp CCGTCTCACCAGCAAGGCCAGCAGCAGCAGAACCAGGAACGACAGTaGAGCCAGGCAGGCATGGAGCAGGGCAGGGGGTGCGGTGAGCTG +
Preference number: 5 (lower is better)
Translates to: PSHQQGQQQQNQERQ*SQAGMEQGRGCGEL
Trigger: CAGCTCACCGCACCCCCTGCCCTGCTCCATGCCTGCCTGGCTTCACTGTCGTTCCTGGTTCTGCTGCTGCTGGCCTTGCTGGTGAGACGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 12 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128021.8
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000136338.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp TCCCCAGCCAAGAAATCCACAGGGCTGGGCAGTCCAAGTCCGCGATaGCCACAGCGTGGCCAAAGCCTGCGCCGTCTCACCAGCAAGGCC +
Preference number: 5 (lower is better)
Translates to: SPAKKSTGLGSPSPR*PQRGQSLRRLTSKA
Trigger: GGCCTTGCTGGTGAGACGGCGCAGGCTTTGGCCACGCTGTGGTCATCGCGGACTTGGACTGCCCAGCCCTGTGGATTTCTTGGCTGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000136338.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp GAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGGGAGGATGGGAGCTGCTCTGGCTGCCTTaGTGTCCTGCTCCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: ELLLGRGGCRHEWEGGWELLWLP*CPAPLA
Trigger: GGCCAAGGGAGCAGGACACAAAGGCAGCCAGAGCAG...CTCCCATCCTCCCTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGCTGCTCTGGCTGCCTTaGTGTCCTGCTCCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: SWLAELLLGRGGCRHEWELLWLP*CPAPLA
Trigger: GGCCAAGGGAGCAGGACACAAAGGCAGCCAGAGCAG...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp CCAGCAGCAGCAGGGCCACCTGGTAAGTGGCTGTTCCTGTCAGGGTaGCCGAGATCACCAGCTTCAAGGGCAGGCGGAATCCTGGCTGTG +
Preference number: 5 (lower is better)
Translates to: PAAAGPPGKWLFLSG*PRSPASRAGGILAV
Trigger: CACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGATCTCGGCCACCCTGACAGGAACAGCCACTTACCAGGTGGCCCTGCTGCTGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 90 bp GGCTTGGATTGTGGAGCAATGTGTAGGCCAGACCCCAGCGGGCCCTaGTCTGGCTGCCTTTGTGTCCTGCTCCCTTGGCCATCAGGTCCT +
Preference number: 5 (lower is better)
Translates to: GLDCGAMCRPDPSGP*SGCLCVLLPWPSGP
Trigger: AGGACCTGATGGCCAAGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTCTGGCCTACACATTGCTCCACAATCCAAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp CAGGCACTGTCCAGGATAGGTCCCCAGCCAAGAAATCCACAGGGCTaGGCAGTCCAAGTCCGCGATGACCACAGCGTGGCCAAAGCCTGC +
Preference number: 5 (lower is better)
Translates to: QALSRIGPQPRNPQG*AVQVRDDHSVAKAC
Trigger: GCAGGCTTTGGCCACGCTGTGGTCATCGCGGACTTGGACTGCCCAGCCCTGTGGATTTCTTGGCTGGGGACCTATCCTGGACAGTGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGGACAGGAGGCTACGCTaGGAGGCAGGATGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: SGASWSLTWLQEKGREWKDRRLR*EAGWEQ
Trigger: CTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTC...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGACACAGTGACTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCGACAGGAGGCTACGCTaGGAGGCAGGATGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: RHSDSSPLIPQGSAGWQSDRRLR*EAGWEQ
Trigger: CTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTC...GCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAGTCACTGTGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGTCAGGAGCAGGAAGGTaGATGCGCAGGACAAGACCA +
Preference number: 5 (lower is better)
Translates to: LQSPDPTGISWLAELLLGSGAGR*MRRTRP
Trigger: TGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTGA...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 90 bp GGCCACGTGGATTCCAGGGATCGCAGCAGCAGGAGGTTCCTGCCATaGAGTAAAGGCACAAACACCAGGAAGGCCAGGGATGTGGTCCCC +
Preference number: 5 (lower is better)
Translates to: GHVDSRDRSSRRFLP*SKGTNTRKARDVVP
Trigger: GGGGACCACATCCCTGGCCTTCCTGGTGTTTGTGCCTTTACTGCATGGCAGGAACCTCCTGCTGCTGCGATCCCTGGAATCCACGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 90 bp CCTCAGGAAGTTTTGGTATGTGTGGTAGCCTGGATCCAGGGAGGCTaGCCTCTGCGGCAGCAGGCTGAGGTCCATCTGGCCGAGGTGAAC +
Preference number: 5 (lower is better)
Translates to: PQEVLVCVVAWIQGG*PLRQQAEVHLAEVN
Trigger: GTTCACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGAGGGCAGCCTCCCTGGATCCAGGCTACCACACATACCAAAACTTCCTGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 90 bp TGTGGAGCAATGTGTAGGCCAGACCCCAGCGGGCCCTGCTCTGGCTaGCTTTGTGTCCTGCTCCCTTGGCCATCAGGTCCTTGGTCTGTA +
Preference number: 5 (lower is better)
Translates to: CGAMCRPDPSGPCSG*LCVLLPWPSGPWSV
Trigger: TACAGACCAAGGACCTGATGGCCAAGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTCTGGCCTACACATTGCTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp GGTGGCCGAGATCACCAGCTTCAAGGGCAGGCGGAATCCTGGCTGTaGAGTGTAGATGGAATGATGGGAGAAGGCCCAGGCCCGAGACAG +
Preference number: 5 (lower is better)
Translates to: GGRDHQLQGQAESWL*SVDGMMGEGPGPRQ
Trigger: CTGTCTCGGGCCTGGGCCTTCTCCCATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGATCTCGGCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp TGTCAGGGTGGCCGAGATCACCAGCTTCAAGGGCAGGCGGAATCCTaGCTGTGGAGTGTAGATGGAATGATGGGAGAAGGCCCAGGCCCG +
Preference number: 5 (lower is better)
Translates to: CQGGRDHQLQGQAES*LWSVDGMMGEGPGP
Trigger: CGGGCCTGGGCCTTCTCCCATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGATCTCGGCCACCCTGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp GGGGGTCCAGATCCAGGGCAGCCCCTCGGTGTAGTGCTTGAAGATTaGCCCTGTGTGTCCTCAGGGATCGGATCAGGAGCAGGAAGGTTG +
Preference number: 5 (lower is better)
Translates to: GGPDPGQPLGVVLED*PCVSSGIGSGAGRL
Trigger: CAACCTTCCTGCTCCTGATCCGATCCCTGAGGACACACAGGGCCAATCTTCAAGCACTACACCGAGGGGCTGCCCTGGATCTGGACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTGACAGGAGGCTACGCTaGGAGGCAGGATGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACDRRLR*EAGWEQ
Trigger: CTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTC...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGCTCCCACCAGCATGTaGATGGGGAAGAGGAGAAAA +
Preference number: 5 (lower is better)
Translates to: SPLIPQGSAGWQSCCWGEAPTSM*MGKRRK
Trigger: TTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAGC...CTCGCCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTCTGCTCTGGCTGCCTTaGTGTCCTGCTCCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACLLWLP*CPAPLA
Trigger: GGCCAAGGGAGCAGGACACAAAGGCAGCCAGAGCAG...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp TGTGGTAGCCTGGATCCAGGGAGGCTGCCCTCTGCGGCAGCAGGCTaGGGTCCATCTGGCCGAGGTGAACAGTGTTGTAGAGAGAAGAGA +
Preference number: 5 (lower is better)
Translates to: CGSLDPGRLPSAAAG*GPSGRGEQCCREKR
Trigger: TCTCTTCTCTCTACAACACTGTTCACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGAGGGCAGCCTCCCTGGATCCAGGCTACCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp TCACCAGCTTCAAGGGCAGGCGGAATCCTGGCTGTGGAGTGTAGATaGAATGATGGGAGAAGGCCCAGGCCCGAGACAGGAGGCTACGCT +
Preference number: 5 (lower is better)
Translates to: SPASRAGGILAVECR*NDGRRPRPETGGYA
Trigger: AGCGTAGCCTCCTGTCTCGGGCCTGGGCCTTCTCCCATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp CTGGCTGGCCTCAATCCTCAGGAAGTTTTGGTATGTGTGGTAGCCTaGATCCAGGGAGGCTGCCCTCTGCGGCAGCAGGCTGAGGTCCAT +
Preference number: 5 (lower is better)
Translates to: LAGLNPQEVLVCVVA*IQGGCPLRQQAEVH
Trigger: ATGGACCTCAGCCTGCTGCCGCAGAGGGCAGCCTCCCTGGATCCAGGCTACCACACATACCAAAACTTCCTGAGGATTGAGGCCAGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CTCCAGTCCCCTGATCCCACAGGGATCAGCTGGCTGGCAGAGCTGCTGCTGGGGAATCCTCAGGAAGTTTaGGTATGTGTGGTAGCCTGG +
Preference number: 5 (lower is better)
Translates to: LQSPDPTGISWLAELLLGNPQEV*VCVVAW
Trigger: CCAGGCTACCACACATACCAAAACTTCCTGAGGATT...CCCCAGCAGCAGCTCTGCCAGCCAGCTGATCCCTGTGGGATCAGGGGACTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTCAGGGCTGGGTGCCATaGGCCTTGGCACTAGTAAGG +
Preference number: 5 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVQGWVP*ALALVR
Trigger: CCTTACTAGTGCCAAGGCCAATGGCACCCAGCCCTG...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 90 bp CTGGCTGCACCTCCTCAGCTCCTAGAGGTTCCTCGATGTACCAGCTaGTGTAGTCATCTGTCACCCCGGAGGAGGTCTGGCTTCCATTCT +
Preference number: 5 (lower is better)
Translates to: LAAPPQLLEVPRCTS*CSHLSPRRRSGFHS
Trigger: AGAATGGAAGCCAGACCTCCTCCGGGGTGACAGATGACTACAGCAGCTGGTACATCGAGGAACCTCTAGGAGCTGAGGAGGTGCAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128021.8
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134450.2
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000136338.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp ACTTCTTTGGGCAGAGAAGAGTTCTCAGATACTTCTCGGAGTAGCTaGTCTGCAGCCCCTGGGAGCCTGCTCCTGTCGGGTGACGGAGAC +
Preference number: 5 (lower is better)
Translates to: TSLGREEFSDTSRSS*SAAPGSLLLSGDGD
Trigger: GTCTCCGTCACCCGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAGCTACTCCGAGAAGTATCTGAGAACTCTTCTCTGCCCAAAGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp GAGAAGGCCCAGGCCCGAGACAGGAGGCTACGCTTGGAGGCAGGATaGGAGCAGCTATCCAACTTCTTTGGGCAGAGAAGAGTTCTCAGA +
Preference number: 5 (lower is better)
Translates to: EKAQARDRRLRLEAG*EQLSNFFGQRRVLR
Trigger: TCTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTCTCGGGCCTGGGCCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp TGGAATGATGGGAGAAGGCCCAGGCCCGAGACAGGAGGCTACGCTTaGAGGCAGGATGGGAGCAGCTATCCAACTTCTTTGGGCAGAGAA +
Preference number: 5 (lower is better)
Translates to: WNDGRRPRPETGGYA*RQDGSSYPTSLGRE
Trigger: TTCTCTGCCCAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTCTCGGGCCTGGGCCTTCTCCCATCATTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGCTTCCAGGGCCCTCTaGATGTCTCCATCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGASRAL*MSPSLH
Trigger: ATGGAGAGATGGAGACATCAAGAGGGCCCTGGAAGC...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CAGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAACTCAGGAAGATCCAGTaGGCTGCTATGTTCTGCAGG +
Preference number: 5 (lower is better)
Translates to: QWGLLESDLAAREGAGVELRKIQ*AAMFCR
Trigger: CCTGCAGAACATAGCAGCCAACTGGATCTTCCTGAG...TTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAACAGGGCTGGGTGCCATaGGCCTTGGCACTAGTAAGG +
Preference number: 5 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKQGWVP*ALALVR
Trigger: CCTTACTAGTGCCAAGGCCAATGGCACCCAGCCCTG...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp GGGGCTGTGGACTTGGAGCATGGAGGAGCAGGGCACAGAAGGCTATaGCTCCTGGATGTGACTGGCTGGCCTCAATCCTCAGGAAGTTTT +
Preference number: 5 (lower is better)
Translates to: GAVDLEHGGAGHRRL*LLDVTGWPQSSGSF
Trigger: AAAACTTCCTGAGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCCTGCTCCTCCATGCTCCAAGTCCACAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGCTGGCTGGCAGAGCTGCTGCTGGGGCGAGGGGGTTGCAGACATGAATGGGAGAGCTATCCAACTTCTTaGGGCAGAGAAGAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: SWLAELLLGRGGCRHEWESYPTS*GREEFS
Trigger: TGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCT...CTCCCATTCATGTCTGCAACCCCCTCGCCCCAGCAGCAGCTCTGCCAGCCAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTTCAGGAGCAGGAAGGTaGATGCGCAGGACAAGACCA +
Preference number: 5 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVSGAGR*MRRTRP
Trigger: TGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTGA...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGCTCAGGAAGATCCAGTaGGCTGCTATGTTCTGCAGG +
Preference number: 5 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGLRKIQ*AAMFCR
Trigger: CCTGCAGAACATAGCAGCCAACTGGATCTTCCTGAG...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTGCTCCCACCAGCATGTaGATGGGGAAGAGGAGAAAA +
Preference number: 5 (lower is better)
Translates to: QGQCEEKRPKCAHPYPACAPTSM*MGKRRK
Trigger: TTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAGC...ACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCGCTCCCACCAGCATGTaGATGGGGAAGAGGAGAAAA +
Preference number: 5 (lower is better)
Translates to: APKADGRASVRRRGLNVPAPTSM*MGKRRK
Trigger: TTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAGC...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp GCTACGCAGAGCATGCGCCGGTTGGTCAGCTCTGGGTATCCATGGTaGGTCCTCAGGAAGATCCAGTTGGCTGCTATGTTCTGCAGGATT +
Preference number: 5 (lower is better)
Translates to: ATQSMRRLVSSGYPW*VLRKIQLAAMFCRI
Trigger: AATCCTGCAGAACATAGCAGCCAACTGGATCTTCCTGAGGACTCACCATGGATACCCAGAGCTGACCAACCGGCGCATGCTCTGCGTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp GCCCCAAAAGCTGATGGCAGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCAGCAACAGGCATAGGTaGCTGAAGAGGACCACAAAG +
Preference number: 5 (lower is better)
Translates to: APKADGRASVRRRGLNVPSNRHR*LKRTTK
Trigger: CTTTGTGGTCCTCTTCAGCAACCTATGCCTGTTGCT...GGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCTGCCATCAGCTTTTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGCTTCCAGGGCCCTCTaGATGTCTCCATCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKASRAL*MSPSLH
Trigger: ATGGAGAGATGGAGACATCAAGAGGGCCCTGGAAGC...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGTGGGGCCTCTTGGAGTCTGACTTGGCTGCAAGAGAAGGGGCGGGAGTGGAAGAATCCTCAGGAAGTTTaGGTATGTGTGGTAGCCTGG +
Preference number: 5 (lower is better)
Translates to: SGASWSLTWLQEKGREWKNPQEV*VCVVAW
Trigger: CCAGGCTACCACACATACCAAAACTTCCTGAGGATT...CTTCCACTCCCGCCCCTTCTCTTGCAGCCAAGTCAGACTCCAAGAGGCCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp GCCCTCTTGATGTCTCCATCTCTCCATCTGGACTTGATGCTGCAGTaGGGTTCAGGAAAGGCAGTGGGTTCTCATCAGGGAGCAACAGGC +
Preference number: 5 (lower is better)
Translates to: ALLMSPSLHLDLMLQ*GSGKAVGSHQGATG
Trigger: GCCTGTTGCTCCCTGATGAGAACCCACTGCCTTTCCTGAACCTCACTGCAGCATCAAGTCCAGATGGAGAGATGGAGACATCAAGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128378.8
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp GAGGAGAAAAGTAGCTACGCAGAGCATGCGCCGGTTGGTCAGCTCTaGGTATCCATGGTGAGTCCTCAGGAAGATCCAGTTGGCTGCTAT +
Preference number: 5 (lower is better)
Translates to: EEKSSYAEHAPVGQL*VSMVSPQEDPVGCY
Trigger: ATAGCAGCCAACTGGATCTTCCTGAGGACTCACCATGGATACCCAGAGCTGACCAACCGGCGCATGCTCTGCGTAGCTACTTTTCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp TGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAACTCAGGAAGATCCAGTaGGCTGCTATGTTCTGCAGG +
Preference number: 5 (lower is better)
Translates to: WGQLGWEIFRPFITNGEKLRKIQ*AAMFCR
Trigger: CCTGCAGAACATAGCAGCCAACTGGATCTTCCTGAG...TTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CTGAGGTGGGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGAATCCTCAGGAAGTTTaGGTATGTGTGGTAGCCTGG +
Preference number: 5 (lower is better)
Translates to: LRWGQLGWEIFRPFITNGNPQEV*VCVVAW
Trigger: CCAGGCTACCACACATACCAAAACTTCCTGAGGATT...CCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCCCACCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 90 bp TGGAGCATGGAGGAGCAGGGCACAGAAGGCTATGACTCCTGGATGTaGCTGGCTGGCCTCAATCCTCAGGAAGTTTTGGTATGTGTGGTA +
Preference number: 5 (lower is better)
Translates to: WSMEEQGTEGYDSWM*LAGLNPQEVLVCVV
Trigger: TACCACACATACCAAAACTTCCTGAGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCCTGCTCCTCCATGCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 90 bp GAGGCTACGCTTGGAGGCAGGATGGGAGCAGCTATCCAACTTCTTTaGGCAGAGAAGAGTTCTCAGATACTTCTCGGAGTAGCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: EATLGGRMGAAIQLL*AEKSSQILLGVAGL
Trigger: CAGACCAGCTACTCCGAGAAGTATCTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCGTAGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp GGGCCAGCTGGGATGGGAGATATTCAGGCCTTTCATCACCAACGGGGAGAAAGAAGCAACAGGCATAGGTaGCTGAAGAGGACCACAAAG +
Preference number: 5 (lower is better)
Translates to: GPAGMGDIQAFHHQRGERSNRHR*LKRTTK
Trigger: CTTTGTGGTCCTCTTCAGCAACCTATGCCTGTTGCT...TCTTTCTCCCCGTTGGTGATGAAAGGCCTGAATATCTCCCATCCCAGCTGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGACAGGGCTGGGTGCCATaGGCCTTGGCACTAGTAAGG +
Preference number: 5 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRQGWVP*ALALVR
Trigger: CCTTACTAGTGCCAAGGCCAATGGCACCCAGCCCTG...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp AGGGCCAGTGTGAGGAGAAGAGGCCTAAATGTGCCCACCCTTACCCTGCCTGTTAGCTATCCAACTTCTTaGGGCAGAGAAGAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: RASVRRRGLNVPTLTLPVSYPTS*GREEFS
Trigger: TGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCT...AACAGGCAGGGTAAGGGTGGGCACATTTAGGCCTCTTCTCCTCACACTGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGATCAGGAGCAGGAAGGTaGATGCGCAGGACAAGACCA +
Preference number: 5 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRSGAGR*MRRTRP
Trigger: TGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTGA...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTAGCTCCCACCAGCATGTaGATGGGGAAGAGGAGAAAA +
Preference number: 5 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLAPTSM*MGKRRK
Trigger: TTTTCTCCTCTTCCCCATCAACATGCTGGTGGGAGC...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTAATCCTCAGGAAGTTTaGGTATGTGTGGTAGCCTGG +
Preference number: 5 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCNPQEV*VCVVAW
Trigger: CCAGGCTACCACACATACCAAAACTTCCTGAGGATT...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp CACCCTTACCCTGCCTGTTCCAAGACAAAGAAACCACTAGCTGCTTTCTCTAGAAGCAACAGGCATAGGTaGCTGAAGAGGACCACAAAG +
Preference number: 5 (lower is better)
Translates to: HPYPACSKTKKPLAAFSRSNRHR*LKRTTK
Trigger: CTTTGTGGTCCTCTTCAGCAACCTATGCCTGTTGCT...TCTAGAGAAAGCAGCTAGTGGTTTCTTTGTCTTGGAACAGGCAGGGTAAGGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp GCTGGTAGCCTGGTGGACAAGCATAGACCAAATTCCTCTAGAAGCTGGTGGTGTAGCTATCCAACTTCTTaGGGCAGAGAAGAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: AGSLVDKHRPNSSRSWWCSYPTS*GREEFS
Trigger: TGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCT...ACACCACCAGCTTCTAGAGGAATTTGGTCTATGCTTGTCCACCAGGCTACCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS-3UTR CAA 90 bp TTCCTCTTAGAGCCCTCCTCTAGGAAGGAGGAATGTTCCTCAGAGGCACATTTAAGCTATCCAACTTCTTaGGGCAGAGAAGAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: FLLEPSSRKEECSSEAHLSYPTS*GREEFS
Trigger: TGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCT...TAAATGTGCCTCTGAGGAACATTCCTCCTTCCTAGAGGAGGGCTCTAAGAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 72 bp GTCCAAGTCCGCGATGACCACAGCGTGGCCAAAGCCTaGGCCGTCTCACCAGCAAGGCCAGCAGCAGCAGAA +
Preference number: 6 (lower is better)
Translates to: VQVRDDHSVAKA*AVSPARPAAAE
Trigger: TTCTGCTGCTGCTGGCCTTGCTGGTGAGACGGCGCAGGCTTTGGCCACGCTGTGGTCATCGCGGACTTGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128021.8
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000136338.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 72 bp TGTGGAGCAATGTGTAGGCCAGACCCCAGCGGGCCCTaGTCTGGCTGCCTTTGTGTCCTGCTCCCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: CGAMCRPDPSGP*SGCLCVLLPWP
Trigger: TGGCCAAGGGAGCAGGACACAAAGGCAGCCAGAGCAGGGCCCGCTGGGGTCTGGCCTACACATTGCTCCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 72 bp AAGAAATCCACAGGGCTGGGCAGTCCAAGTCCGCGATaGCCACAGCGTGGCCAAAGCCTGCGCCGTCTCACC +
Preference number: 6 (lower is better)
Translates to: KKSTGLGSPSPR*PQRGQSLRRLT
Trigger: GGTGAGACGGCGCAGGCTTTGGCCACGCTGTGGTCATCGCGGACTTGGACTGCCCAGCCCTGTGGATTTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000136338.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 72 bp CTGGATCCAGGGAGGCTGCCCTCTGCGGCAGCAGGCTaGGGTCCATCTGGCCGAGGTGAACAGTGTTGTAGA +
Preference number: 6 (lower is better)
Translates to: LDPGRLPSAAAG*GPSGRGEQCCR
Trigger: TCTACAACACTGTTCACCTCGGCCAGATGGACCTCAGCCTGCTGCCGCAGAGGGCAGCCTCCCTGGATCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 72 bp GTTTTGGTATGTGTGGTAGCCTGGATCCAGGGAGGCTaGCCTCTGCGGCAGCAGGCTGAGGTCCATCTGGCC +
Preference number: 6 (lower is better)
Translates to: VLVCVVAWIQGG*PLRQQAEVHLA
Trigger: GGCCAGATGGACCTCAGCCTGCTGCCGCAGAGGGCAGCCTCCCTGGATCCAGGCTACCACACATACCAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp GCAGGGCCACCTGGTAAGTGGCTGTTCCTGTCAGGGTaGCCGAGATCACCAGCTTCAAGGGCAGGCGGAATC +
Preference number: 6 (lower is better)
Translates to: AGPPGKWLFLSG*PRSPASRAGGI
Trigger: GATTCCGCCTGCCCTTGAAGCTGGTGATCTCGGCCACCCTGACAGGAACAGCCACTTACCAGGTGGCCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp GGGAGAAGGCCCAGGCCCGAGACAGGAGGCTACGCTTaGAGGCAGGATGGGAGCAGCTATCCAACTTCTTTG +
Preference number: 6 (lower is better)
Translates to: GRRPRPETGGYA*RQDGSSYPTSL
Trigger: CAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCCTGTCTCGGGCCTGGGCCTTCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 72 bp CTGGTCTGCAGCCCCTGGGAGCCTGCTCCTGTCGGGTaGCGGAGACTCTGCACAAGTTGTACTGGATACCAA +
Preference number: 6 (lower is better)
Translates to: LVCSPWEPAPVG*RRLCTSCTGYQ
Trigger: TTGGTATCCAGTACAACTTGTGCAGAGTCTCCGTCACCCGACAGGAGCAGGCTCCCAGGGGCTGCAGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS GCA 72 bp CCTCCTCAGCTCCTAGAGGTTCCTCGATGTACCAGCTaGTGTAGTCATCTGTCACCCCGGAGGAGGTCTGGC +
Preference number: 6 (lower is better)
Translates to: PPQLLEVPRCTS*CSHLSPRRRSG
Trigger: GCCAGACCTCCTCCGGGGTGACAGATGACTACAGCAGCTGGTACATCGAGGAACCTCTAGGAGCTGAGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000128021.8
ENSMUST00000128378.8
ENSMUST00000133287.8
ENSMUST00000134450.2
ENSMUST00000134955.8
ENSMUST00000136154.8
ENSMUST00000136338.8
ENSMUST00000147134.8
ENSMUST00000150820.8
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp TCAAGGGCAGGCGGAATCCTGGCTGTGGAGTGTAGATaGAATGATGGGAGAAGGCCCAGGCCCGAGACAGGA +
Preference number: 6 (lower is better)
Translates to: SRAGGILAVECR*NDGRRPRPETG
Trigger: TCCTGTCTCGGGCCTGGGCCTTCTCCCATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp GATCCAGGGCAGCCCCTCGGTGTAGTGCTTGAAGATTaGCCCTGTGTGTCCTCAGGGATCGGATCAGGAGCA +
Preference number: 6 (lower is better)
Translates to: DPGQPLGVVLED*PCVSSGIGSGA
Trigger: TGCTCCTGATCCGATCCCTGAGGACACACAGGGCCAATCTTCAAGCACTACACCGAGGGGCTGCCCTGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp GATCACCAGCTTCAAGGGCAGGCGGAATCCTGGCTGTaGAGTGTAGATGGAATGATGGGAGAAGGCCCAGGC +
Preference number: 6 (lower is better)
Translates to: DHQLQGQAESWL*SVDGMMGEGPG
Trigger: GCCTGGGCCTTCTCCCATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp GGCCGAGATCACCAGCTTCAAGGGCAGGCGGAATCCTaGCTGTGGAGTGTAGATGGAATGATGGGAGAAGGC +
Preference number: 6 (lower is better)
Translates to: GRDHQLQGQAES*LWSVDGMMGEG
Trigger: GCCTTCTCCCATCATTCCATCTACACTCCACAGCCAGGATTCCGCCTGCCCTTGAAGCTGGTGATCTCGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp CTCAATCCTCAGGAAGTTTTGGTATGTGTGGTAGCCTaGATCCAGGGAGGCTGCCCTCTGCGGCAGCAGGCT +
Preference number: 6 (lower is better)
Translates to: LNPQEVLVCVVA*IQGGCPLRQQA
Trigger: AGCCTGCTGCCGCAGAGGGCAGCCTCCCTGGATCCAGGCTACCACACATACCAAAACTTCCTGAGGATTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 72 bp GACTTGGAGCATGGAGGAGCAGGGCACAGAAGGCTATaGCTCCTGGATGTGACTGGCTGGCCTCAATCCTCA +
Preference number: 6 (lower is better)
Translates to: DLEHGGAGHRRL*LLDVTGWPQSS
Trigger: TGAGGATTGAGGCCAGCCAGTCACATCCAGGAGTCATAGCCTTCTGTGCCCTGCTCCTCCATGCTCCAAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS TCA 72 bp AGCATGCGCCGGTTGGTCAGCTCTGGGTATCCATGGTaGGTCCTCAGGAAGATCCAGTTGGCTGCTATGTTC +
Preference number: 6 (lower is better)
Translates to: SMRRLVSSGYPW*VLRKIQLAAMF
Trigger: GAACATAGCAGCCAACTGGATCTTCCTGAGGACTCACCATGGATACCCAGAGCTGACCAACCGGCGCATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp AGTAGCTACGCAGAGCATGCGCCGGTTGGTCAGCTCTaGGTATCCATGGTGAGTCCTCAGGAAGATCCAGTT +
Preference number: 6 (lower is better)
Translates to: SSYAEHAPVGQL*VSMVSPQEDPV
Trigger: AACTGGATCTTCCTGAGGACTCACCATGGATACCCAGAGCTGACCAACCGGCGCATGCTCTGCGTAGCTACT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CAA 72 bp GCCTGCTCCTGTCGGGTGACGGAGACTCTGCACAAGTaGTACTGGATACCAAAGGCTCAGGAATCCAAGACC +
Preference number: 6 (lower is better)
Translates to: ACSCRVTETLHK*YWIPKAQESKT
Trigger: GGTCTTGGATTCCTGAGCCTTTGGTATCCAGTACAACTTGTGCAGAGTCTCCGTCACCCGACAGGAGCAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CAA 72 bp TGTGTGTCCTCAGGGATCGGATCAGGAGCAGGAAGGTaGATGCGCAGGACAAGACCAGAGCTGAGATGTAGC +
Preference number: 6 (lower is better)
Translates to: CVSSGIGSGAGR*MRRTRPELRCS
Trigger: GCTACATCTCAGCTCTGGTCTTGTCCTGCGCATCAACCTTCCTGCTCCTGATCCGATCCCTGAGGACACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CAA 90 bp GGAGGCTACGCTTGGAGGCAGGATGGGAGCAGCTATCCAACTTCTTaGGGCAGAGAAGAGTTCTCAGATACTTCTCGGAGTAGCTGGTCT +
Preference number: 6 (lower is better)
Translates to: GGYAWRQDGSSYPTS*GREEFSDTSRSSWS
Trigger: AGACCAGCTACTCCGAGAAGTATCTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGCGTAGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp CTGGGTATCCATGGTGAGTCCTCAGGAAGATCCAGTTaGCTGCTATGTTCTGCAGGATTACAGCTAAGGCCA +
Preference number: 6 (lower is better)
Translates to: LGIHGESSGRSS*LLCSAGLQLRP
Trigger: TGGCCTTAGCTGTAATCCTGCAGAACATAGCAGCCAACTGGATCTTCCTGAGGACTCACCATGGATACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CAA 72 bp GCTTGGAGGCAGGATGGGAGCAGCTATCCAACTTCTTaGGGCAGAGAAGAGTTCTCAGATACTTCTCGGAGT +
Preference number: 6 (lower is better)
Translates to: AWRQDGSSYPTS*GREEFSDTSRS
Trigger: ACTCCGAGAAGTATCTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8
CDS CCA 72 bp CTTGGAGGCAGGATGGGAGCAGCTATCCAACTTCTTTaGGCAGAGAAGAGTTCTCAGATACTTCTCGGAGTA +
Preference number: 6 (lower is better)
Translates to: LGGRMGAAIQLL*AEKSSQILLGV
Trigger: TACTCCGAGAAGTATCTGAGAACTCTTCTCTGCCCAAAGAAGTTGGATAGCTGCTCCCATCCTGCCTCCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034880.10
ENSMUST00000085677.9
ENSMUST00000167479.8
ENSMUST00000170397.8