Pregenerated sensors for STPG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036557Ensembl transcript IDs: ENSMUST00000040609.9, ENSMUST00000186211.2, ENSMUST00000187078.7
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGGGGTCTGCCCGGGGTTTGTCCTTGAAAGAGTATGAGGCCGTCTaGTTCTTCAGCAGCTCCAAGAAGTCAGGAGGACTGTACTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LGSARGLSLKEYEAV*FFSSSKKSGGLYCG Trigger: CCCACAGTACAGTCCTCCTGACTTCTTGGAGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CCA 90 bp | TTGGGAACCGGTGCTGGAAGTACCTCGTACTGTCCCGGGCAAAGATaGAGTGACTCATCTTTGTCAACTAGTGTGCTGGGGTCTGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: LGTGAGSTSYCPGQR*SDSSLSTSVLGSAR Trigger: CCGGGCAGACCCCAGCACACTAGTTGACAAAGATGAGTCACTCCATCTTTGCCCGGGACAGTACGAGGTACTTCCAGCACCGGTTCCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CCA 90 bp | CAGCAGCTCCAAGAAGTCAGGAGGACTGTACTGTGGGAGGTCAGTTaGGACCGGATCGTTTCTCAGCACAAGAGGGAGCTTTTTCCTCCC | + |
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Preference number: 5 (lower is better) Translates to: QQLQEVRRTVLWEVS*DRIVSQHKRELFPP Trigger: GGGAGGAAAAAGCTCCCTCTTGTGCTGAGAAACGATCCGGTCCCAACTGACCTCCCACAGTACAGTCCTCCTGACTTCTTGGAGCTGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CCA 90 bp | ATCTTTGAACTGAAGAGCGAAATACGAAGCTCCTGGCTGGGCTCTTaGGAACCGGTGCTGGAAGTACCTCGTACTGTCCCGGGCAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: IFELKSEIRSSWLGS*EPVLEVPRTVPGKD Trigger: ATCTTTGCCCGGGACAGTACGAGGTACTTCCAGCACCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTATTTCGCTCTTCAGTTCAAAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS TCA 90 bp | CATCTTTGTCAACTAGTGTGCTGGGGTCTGCCCGGGGTTTGTCCTTaGAAGAGTATGAGGCCGTCTGCTTCTTCAGCAGCTCCAAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: HLCQLVCWGLPGVCP*KSMRPSASSAAPRS Trigger: ACTTCTTGGAGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTGACAAAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS TCA 90 bp | AGGGCCCTCGTGAGGAGTGAAATAATTTGGTGGGAATCTTTGAACTaGAGAGCGAAATACGAAGCTCCTGGCTGGGCTCTTGGGAACCGG | + |
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Preference number: 5 (lower is better) Translates to: RALVRSEIIWWESLN*RAKYEAPGWALGNR Trigger: CCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTATTTCGCTCTTCAGTTCAAAGATTCCCACCAAATTATTTCACTCCTCACGAGGGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040609.9 |
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| CDS CCA 90 bp | AATTTGGTGGGAATCTTTGAACTGAAGAGCGAAATACGAAGCTCCTaGCTGGGCTCTTGGGAACCGGTGCTGGAAGTACCTCGTACTGTC | + |
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Preference number: 5 (lower is better) Translates to: NLVGIFELKSEIRSS*LGSWEPVLEVPRTV Trigger: GACAGTACGAGGTACTTCCAGCACCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTATTTCGCTCTTCAGTTCAAAGATTCCCACCAAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS GCA 90 bp | AAGAAGAGACTGTGTTCTCTACCCATTTTGGCAATGGTTGAAGACTaGTTGGGGAACTGTCTCGAAGATGTGTATGCTCCTGGGCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: KKRLCSLPILAMVED*LGNCLEDVYAPGPG Trigger: ACCAGGCCCAGGAGCATACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAGTCTCTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CCA 90 bp | AGAGACTGTGTTCTCTACCCATTTTGGCAATGGTTGAAGACTGCTTaGGGAACTGTCTCGAAGATGTGTATGCTCCTGGGCCTGGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: RDCVLYPFWQWLKTA*GTVSKMCMLLGLVF Trigger: AAACACCAGGCCCAGGAGCATACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAGTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS TCA 90 bp | ATGCCTTCAGCTCATAGTCACCTGGTCCAGGGCCCTCGTGAGGAGTaGAATAATTTGGTGGGAATCTTTGAACTGAAGAGCGAAATACGA | + |
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Preference number: 5 (lower is better) Translates to: MPSAHSHLVQGPREE*NNLVGIFELKSEIR Trigger: TCGTATTTCGCTCTTCAGTTCAAAGATTCCCACCAAATTATTTCACTCCTCACGAGGGCCCTGGACCAGGTGACTATGAGCTGAAGGCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040609.9 |
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| CDS CCA 72 bp | CATGAGGAGCGGCTCCCCATGTCCCAGGTCTTCTCTTaGTACTGTGGTGGGGGCTATGACAACGGTTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: HEERLPMSQVFS*YCGGGYDNGWL Trigger: GAGCCAACCGTTGTCATAGCCCCCACCACAGTACCAAGAGAAGACCTGGGACATGGGGAGCCGCTCCTCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CCA 72 bp | TACGAAGCTCCTGGCTGGGCTCTTGGGAACCGGTGCTaGAAGTACCTCGTACTGTCCCGGGCAAAGATGGAG | + |
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Preference number: 6 (lower is better) Translates to: YEAPGWALGNRC*KYLVLSRAKME Trigger: CTCCATCTTTGCCCGGGACAGTACGAGGTACTTCCAGCACCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CAA 90 bp | GAGCCTCCACCATCCTTCTCTCTCAAGACCTGGCGTCTTCTTGACTaGTTTCGCAGTCATGAGGAGCGGCTCCCCATGTCCCAGGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EPPPSFSLKTWRLLD*FRSHEERLPMSQVF Trigger: GAAGACCTGGGACATGGGGAGCCGCTCCTCATGACTGCGAAACAAGTCAAGAAGACGCCAGGTCTTGAGAGAGAAGGATGGTGGAGGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS TCA 72 bp | GCTGGGGTCTGCCCGGGGTTTGTCCTTGAAAGAGTATaGGGCCGTCTGCTTCTTCAGCAGCTCCAAGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: AGVCPGFVLERV*GRLLLQQLQEV Trigger: GACTTCTTGGAGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS GCA 72 bp | AAATACGAAGCTCCTGGCTGGGCTCTTGGGAACCGGTaGTGGAAGTACCTCGTACTGTCCCGGGCAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: KYEAPGWALGNR*WKYLVLSRAKM Trigger: CATCTTTGCCCGGGACAGTACGAGGTACTTCCAGCACCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CAA 72 bp | ACTGAAGAGCGAAATACGAAGCTCCTGGCTGGGCTCTaGGGAACCGGTGCTGGAAGTACCTCGTACTGTCCC | + |
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Preference number: 6 (lower is better) Translates to: TEERNTKLLAGL*GTGAGSTSYCP Trigger: GGGACAGTACGAGGTACTTCCAGCACCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTATTTCGCTCTTCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CAA 90 bp | ATTGTGAGCCTCCACCATCCTTCTCTCTCAAGACCTGGCGTCTTCTaGACTTGTTTCGCAGTCATGAGGAGCGGCTCCCCATGTCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: IVSLHHPSLSRPGVF*TCFAVMRSGSPCPR Trigger: CCTGGGACATGGGGAGCCGCTCCTCATGACTGCGAAACAAGTCAAGAAGACGCCAGGTCTTGAGAGAGAAGGATGGTGGAGGCTCACAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS TCA 72 bp | CAACTAGTGTGCTGGGGTCTGCCCGGGGTTTGTCCTTaGAAGAGTATGAGGCCGTCTGCTTCTTCAGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: QLVCWGLPGVCP*KSMRPSASSAA Trigger: AGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | CCATCCTTCTCTCTCAAGACCTGGCGTCTTCTTGACTaGTTTCGCAGTCATGAGGAGCGGCTCCCCATGTCC | + |
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Preference number: 6 (lower is better) Translates to: PSFSLKTWRLLD*FRSHEERLPMS Trigger: GGACATGGGGAGCCGCTCCTCATGACTGCGAAACAAGTCAAGAAGACGCCAGGTCTTGAGAGAGAAGGATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | CTCCACCATCCTTCTCTCTCAAGACCTGGCGTCTTCTaGACTTGTTTCGCAGTCATGAGGAGCGGCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: LHHPSLSRPGVF*TCFAVMRSGSP Trigger: TGGGGAGCCGCTCCTCATGACTGCGAAACAAGTCAAGAAGACGCCAGGTCTTGAGAGAGAAGGATGGTGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | CCAAGAAGTCAGGAGGACTGTACTGTGGGAGGTCAGTaGGGACCGGATCGTTTCTCAGCACAAGAGGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: PRSQEDCTVGGQ*GPDRFSAQEGA Trigger: AGCTCCCTCTTGTGCTGAGAAACGATCCGGTCCCAACTGACCTCCCACAGTACAGTCCTCCTGACTTCTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | TCAACTAGTGTGCTGGGGTCTGCCCGGGGTTTGTCCTaGAAAGAGTATGAGGCCGTCTGCTTCTTCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: STSVLGSARGLS*KEYEAVCFFSS Trigger: GCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CAA 90 bp | TCAGCAGCTCCAAGAAGTCAGGAGGACTGTACTGTGGGAGGTCAGTaGGGACCGGATCGTTTCTCAGCACAAGAGGGAGCTTTTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SAAPRSQEDCTVGGQ*GPDRFSAQEGAFSS Trigger: GGAGGAAAAAGCTCCCTCTTGTGCTGAGAAACGATCCGGTCCCAACTGACCTCCCACAGTACAGTCCTCCTGACTTCTTGGAGCTGCTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CAA 90 bp | TCGTGCTCATCTTTGTCAACTAGTGTGCTGGGGTCTGCCCGGGGTTaGTCCTTGAAAGAGTATGAGGCCGTCTGCTTCTTCAGCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SCSSLSTSVLGSARG*SLKEYEAVCFFSSS Trigger: GGAGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTGACAAAGATGAGCACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000187078.7 |
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| CDS CCA 72 bp | CAAGAAGTCAGGAGGACTGTACTGTGGGAGGTCAGTTaGGACCGGATCGTTTCTCAGCACAAGAGGGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: QEVRRTVLWEVS*DRIVSQHKREL Trigger: AAGCTCCCTCTTGTGCTGAGAAACGATCCGGTCCCAACTGACCTCCCACAGTACAGTCCTCCTGACTTCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS CCA 72 bp | GGTGCTGGAAGTACCTCGTACTGTCCCGGGCAAAGATaGAGTGACTCATCTTTGTCAACTAGTGTGCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: GAGSTSYCPGQR*SDSSLSTSVLG Trigger: CCCCAGCACACTAGTTGACAAAGATGAGTCACTCCATCTTTGCCCGGGACAGTACGAGGTACTTCCAGCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CAA 90 bp | AGTGACTCATCTTTGTCAACTAGTGTGCTGGGGTCTGCCCGGGGTTaGTCCTTGAAAGAGTATGAGGCCGTCTGCTTCTTCAGCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SDSSLSTSVLGSARG*SLKEYEAVCFFSSS Trigger: GGAGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTGACAAAGATGAGTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CAA 90 bp | GGAAGTACCTCGTACTGTCCCGGGCAAAGATGGAGTGACTCATCTTaGTCAACTAGTGTGCTGGGGTCTGCCCGGGGTTTGTCCTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: GSTSYCPGQRWSDSS*STSVLGSARGLSLK Trigger: TTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTGACAAAGATGAGTCACTCCATCTTTGCCCGGGACAGTACGAGGTACTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CCA 72 bp | GGAATCTTTGAACTGAAGAGCGAAATACGAAGCTCCTaGCTGGGCTCTTGGGAACCGGTGCTGGAAGTACCT | + |
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Preference number: 6 (lower is better) Translates to: GIFELKSEIRSS*LGSWEPVLEVP Trigger: AGGTACTTCCAGCACCGGTTCCCAAGAGCCCAGCCAGGAGCTTCGTATTTCGCTCTTCAGTTCAAAGATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 |
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| CDS CAA 90 bp | TCATCTTTGTCAACTAGTGTGCTGGGGTCTGCCCGGGGTTTGTCCTaGAAAGAGTATGAGGCCGTCTGCTTCTTCAGCAGCTCCAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: SSLSTSVLGSARGLS*KEYEAVCFFSSSKK Trigger: CTTCTTGGAGCTGCTGAAGAAGCAGACGGCCTCATACTCTTTCAAGGACAAACCCCGGGCAGACCCCAGCACACTAGTTGACAAAGATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS TCA 72 bp | AATGGTAAGTACCAGGTATCGGAGTATCCGTTATTGTaGGCCTCCACCATCCTTCTCTCTCAAGACCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: NGKYQVSEYPLL*ASTILLSQDLA Trigger: CGCCAGGTCTTGAGAGAGAAGGATGGTGGAGGCTCACAATAACGGATACTCCGATACCTGGTACTTACCATT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040609.9 ENSMUST00000186211.2 ENSMUST00000187078.7 |
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| CDS TCA 72 bp | GCTCATAGTCACCTGGTCCAGGGCCCTCGTGAGGAGTaGAATAATTTGGTGGGAATCTTTGAACTGAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: AHSHLVQGPREE*NNLVGIFELKS Trigger: GCTCTTCAGTTCAAAGATTCCCACCAAATTATTTCACTCCTCACGAGGGCCCTGGACCAGGTGACTATGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040609.9 |
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| CDS CCA 72 bp | GTTCTCTACCCATTTTGGCAATGGTTGAAGACTGCTTaGGGAACTGTCTCGAAGATGTGTATGCTCCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: VLYPFWQWLKTA*GTVSKMCMLLG Trigger: GCCCAGGAGCATACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CAA 90 bp | AAGAGACTGTGTTCTCTACCCATTTTGGCAATGGTTGAAGACTGCTaGGGGAACTGTCTCGAAGATGTGTATGCTCCTGGGCCTGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: KRLCSLPILAMVEDC*GNCLEDVYAPGPGV Trigger: AACACCAGGCCCAGGAGCATACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAGTCTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | TGTTCTCTACCCATTTTGGCAATGGTTGAAGACTGCTaGGGGAACTGTCTCGAAGATGTGTATGCTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: CSLPILAMVEDC*GNCLEDVYAPG Trigger: CCCAGGAGCATACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS GCA 72 bp | CTGTGTTCTCTACCCATTTTGGCAATGGTTGAAGACTaGTTGGGGAACTGTCTCGAAGATGTGTATGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LCSLPILAMVED*LGNCLEDVYAP Trigger: AGGAGCATACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CCA 72 bp | AACCTTAGATCGAAAACAAGAAGTAATAGAGCCTTTTaGGGATGCCTTCAGCTCATAGTCACCTGGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: NLRSKTRSNRAF*GCLQLIVTWSR Trigger: CCTGGACCAGGTGACTATGAGCTGAAGGCATCCCCAAAAGGCTCTATTACTTCTTGTTTTCGATCTAAGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | AGAAGAGACTGTGTTCTCTACCCATTTTGGCAATGGTaGAAGACTGCTTGGGGAACTGTCTCGAAGATGTGT | + |
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Preference number: 6 (lower is better) Translates to: RRDCVLYPFWQW*KTAWGTVSKMC Trigger: ACACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAGTCTCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CAA 72 bp | GTGTTGTTGAAGAAGAGACTGTGTTCTCTACCCATTTaGGCAATGGTTGAAGACTGCTTGGGGAACTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: VLLKKRLCSLPI*AMVEDCLGNCL Trigger: GAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAGTCTCTTCTTCAACAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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| CDS CAA 90 bp | AAGCCAATTGTGTTGTTGAAGAAGAGACTGTGTTCTCTACCCATTTaGGCAATGGTTGAAGACTGCTTGGGGAACTGTCTCGAAGATGTG | + |
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Preference number: 6 (lower is better) Translates to: KPIVLLKKRLCSLPI*AMVEDCLGNCLEDV Trigger: CACATCTTCGAGACAGTTCCCCAAGCAGTCTTCAACCATTGCCAAAATGGGTAGAGAACACAGTCTCTTCTTCAACAACACAATTGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040609.9 ENSMUST00000187078.7 |
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