RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STON2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020961

Ensembl transcript IDs: ENSMUST00000052969.15, ENSMUST00000164713.8, ENSMUST00000166967.2, ENSMUST00000170077.2

Found 467 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAACCCAGCGTGACCGTCCCTGGGATAGCTGGCCGGGTTAACCTCTaGGCACTTGCTGCAGCAGGACATCTTACTTTACCCGTTCTTCTT +
Preference number: 1 (lower is better)
Translates to: QPSVTVPGIAGRVNL*ALAAAGHLTLPVLL
Trigger: AAGAAGAACGGGTAAAGTAAGATGTCCTGCTGCAGCAAGTGCCCAGAGGTTAACCCGGCCAGCTATCCCAGGGACGGTCACGCTGGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp GGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGACTaGCTGAGCACTCCATCAGATGTGAGCGTCTTCCATGAGTCACTG +
Preference number: 1 (lower is better)
Translates to: GHGYRWEDKHPTQQD*LSTPSDVSVFHESL
Trigger: CAGTGACTCATGGAAGACGCTCACATCTGATGGAGTGCTCAGCCAGTCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp TCAGCAGGACTGGCTGAGCACTCCATCAGATGTGAGCGTCTTCCATaGGTCACTGTCACAGTGAGGAGGCAGAGGCTCACAGGTTTGTTT +
Preference number: 1 (lower is better)
Translates to: SAGLAEHSIRCERLP*VTVTVRRQRLTGLF
Trigger: AAACAAACCTGTGAGCCTCTGCCTCCTCACTGTGACAGTGACTCATGGAAGACGCTCACATCTGATGGAGTGCTCAGCCAGTCCTGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp GGAACTCACTCTATAGGTCAGGCTGACTTTGAACTCAGGCAGACTTaGCTCTGCCTTCCAAATGCTGGGATTAAAGGTGTGTGCCGCCGC +
Preference number: 1 (lower is better)
Translates to: GTHSIGQADFELRQT*LCLPNAGIKGVCRR
Trigger: GCGGCGGCACACACCTTTAATCCCAGCATTTGGAAGGCAGAGGCAAGTCTGCCTGAGTTCAAAGTCAGCCTGACCTATAGAGTGAGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp TTGTTTCGGGGACACTGGGGTTTGAACCACACTCATTGGACCTTGTaGACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTG +
Preference number: 1 (lower is better)
Translates to: LFRGHWGLNHTHWTL*TLGRLSITEQTSCL
Trigger: CAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCGAAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp GAAAAGGAGGCTGGCCTGAGTCCTGGAATCAGGATTTCACATTCTTaGCACTGGAGACTGGCTTTCCCCAGCTCTACTCTGGAGCCTTCT +
Preference number: 1 (lower is better)
Translates to: EKEAGLSPGIRISHS*HWRLAFPSSTLEPS
Trigger: AGAAGGCTCCAGAGTAGAGCTGGGGAAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCTGATTCCAGGACTCAGGCCAGCCTCCTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp AAGGCTGCCTGGGGCTTAGACAGCCTCACTCCTATCAAGATTGTTTaGAAAAGAGCTTTCCTGCCATCTTGCCCAACCCAGCGTGACCGT +
Preference number: 1 (lower is better)
Translates to: KAAWGLDSLTPIKIV*KRAFLPSCPTQRDR
Trigger: ACGGTCACGCTGGGTTGGGCAAGATGGCAGGAAAGCTCTTTTTCAAACAATCTTGATAGGAGTGAGGCTGTCTAAGCCCCAGGCAGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp TGTTGTTGTTTGTTTCGGGGACACTGGGGTTTGAACCACACTCATTaGACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACC +
Preference number: 1 (lower is better)
Translates to: CCCLFRGHWGLNHTH*TLCTLGRLSITEQT
Trigger: GGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCGAAACAAACAACAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp AGTCACAGAAAGCCCAACTTTTTCCTCCACAAAGCTGTCACAGCATaGCTTACCAACAGCTTAGTGTGTGGCATCTTGTCCCCGCAGGGA +
Preference number: 1 (lower is better)
Translates to: SHRKPNFFLHKAVTA*LTNSLVCGILSPQG
Trigger: TCCCTGCGGGGACAAGATGCCACACACTAAGCTGTTGGTAAGGCATGCTGTGACAGCTTTGTGGAGGAAAAAGTTGGGCTTTCTGTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp GGCTCAGCCACCGACACACTGAAATTCATATGGACCTTACAGAAATaGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTG +
Preference number: 1 (lower is better)
Translates to: GSATDTLKFIWTLQK*RVKKDAPPFQTPIL
Trigger: CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAAGGTCCATATGAATTTCAGTGTGTCGGTGGCTGAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTaGATTGTGGGCTCAGCCACCGACACACTGAAATTCATATGGACC +
Preference number: 1 (lower is better)
Translates to: TNDRKYKPQNGQGIH*IVGSATDTLKFIWT
Trigger: GGTCCATATGAATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp CCGCGGGGATGTTACTGGCATGCATTTGTTCCCACACTTAAGATCTaGCCGCCTGTATCTCCTTCACTCTTAATCTCTTTAATACACGAT +
Preference number: 1 (lower is better)
Translates to: PRGCYWHAFVPTLKI*PPVSPSLLISLIHD
Trigger: ATCGTGTATTAAAGAGATTAAGAGTGAAGGAGATACAGGCGGGCAGATCTTAAGTGTGGGAACAAATGCATGCCAGTAACATCCCCGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp AATTGGCTAAGGCACACTAGAAGAAATAGAAAACTTCCATGCTCTTaGTTAGGCGACCGCGGGGATGTTACTGGCATGCATTTGTTCCCA +
Preference number: 1 (lower is better)
Translates to: NWLRHTRRNRKLPCS*LGDRGDVTGMHLFP
Trigger: TGGGAACAAATGCATGCCAGTAACATCCCCGCGGTCGCCTAAGCAAGAGCATGGAAGTTTTCTATTTCTTCTAGTGTGCCTTAGCCAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp TTGGCAAATTGGCTAAGGCACACTAGAAGAAATAGAAAACTTCCATaGTCTTGCTTAGGCGACCGCGGGGATGTTACTGGCATGCATTTG +
Preference number: 1 (lower is better)
Translates to: LANWLRHTRRNRKLP*SCLGDRGDVTGMHL
Trigger: CAAATGCATGCCAGTAACATCCCCGCGGTCGCCTAAGCAAGAGCATGGAAGTTTTCTATTTCTTCTAGTGTGCCTTAGCCAATTTGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp CCACACTCATTGGACCTTGTGCACCCTAGGCAGGCTCTCTATCACTaGGCAGACCTCTTGTCTGATACATTAGAATGCTTAATTATCTTT +
Preference number: 1 (lower is better)
Translates to: PHSLDLVHPRQALYH*ADLLSDTLECLIIF
Trigger: AAAGATAATTAAGCATTCTAATGTATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp CATAAAACGAGCCACAATAGTGCAAGAAGTTACACTGAGTGGGGATaGATGACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGC +
Preference number: 1 (lower is better)
Translates to: HKTSHNSARSYTEWG*MTNDRKYKPQNGQG
Trigger: GCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGTCATTCATCCCCACTCAGTGTAACTTCTTGCACTATTGTGGCTCGTTTTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp TACACACACACACACACCACACACACATACACACACACACCTCTGTaGTCAAAGGGTGACATTTTAAACTCTCAAAATACAGGTCTTCCC +
Preference number: 1 (lower is better)
Translates to: YTHTHTTHTYTHTPL*SKGDILNSQNTGLP
Trigger: GGGAAGACCTGTATTTTGAGAGTTTAAAATGTCACCCTTTGAGCACAGAGGTGTGTGTGTGTATGTGTGTGTGGTGTGTGTGTGTGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp AAGTCTTTTCAATTAAGGAGCACTCATGAGGATAAGCTCTCACAGTaGACGTGGGGAGGTCTTGGGCAGATCAGAAAGCAAATTGGAAAA +
Preference number: 1 (lower is better)
Translates to: KSFQLRSTHEDKLSQ*TWGGLGQIRKQIGK
Trigger: TTTTCCAATTTGCTTTCTGATCTGCCCAAGACCTCCCCACGTTCACTGTGAGAGCTTATCCTCATGAGTGCTCCTTAATTGAAAAGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 90 bp ACTGAAATTCATATGGACCTTACAGAAATGGAGGGTGAAGAAGGATaGTCCTCCATTCCAAACACCAATCCTGATGAACCTTCTCGATAT +
Preference number: 1 (lower is better)
Translates to: TEIHMDLTEMEGEEG*SSIPNTNPDEPSRY
Trigger: ATATCGAGAAGGTTCATCAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAAGGTCCATATGAATTTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp AACTCCCTTTCAACTCTTAAAGTACAGGACTGGACTTTGGCAAATTaGCTAAGGCACACTAGAAGAAATAGAAAACTTCCATGCTCTTGC +
Preference number: 1 (lower is better)
Translates to: NSLSTLKVQDWTLAN*LRHTRRNRKLPCSC
Trigger: GCAAGAGCATGGAAGTTTTCTATTTCTTCTAGTGTGCCTTAGCCAATTTGCCAAAGTCCAGTCCTGTACTTTAAGAGTTGAAAGGGAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp GTGACCAGTGAGAATCTGGCATATTTTATGATTGAAGCTGTCCTCTaGACTGAATATAAGCTGACATTTAATGCTCCTTTTCCTTCAAGG +
Preference number: 1 (lower is better)
Translates to: VTSENLAYFMIEAVL*TEYKLTFNAPFPSR
Trigger: CCTTGAAGGAAAAGGAGCATTAAATGTCAGCTTATATTCAGTTCAGAGGACAGCTTCAATCATAAAATATGCCAGATTCTCACTGGTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp GTTCTGCAGAACATAGTACTATTGAAATGTTCTGCCTTTATGGCTTaGAATTGTAAGTTGACATATGCATGCTCTTCCCAAACTCCCTTT +
Preference number: 1 (lower is better)
Translates to: VLQNIVLLKCSAFMA*NCKLTYACSSQTPF
Trigger: AAAGGGAGTTTGGGAAGAGCATGCATATGTCAACTTACAATTCCAAGCCATAAAGGCAGAACATTTCAATAGTACTATGTTCTGCAGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp CACTGTAAAGTCGAAACAGAAGTCCTAGACACAAAAACAAGTTTTTaGTACTACGTGGCAACTAATACGTTTGGATTGGTTTCTACCACT +
Preference number: 1 (lower is better)
Translates to: HCKVETEVLDTKTSF*YYVATNTFGLVSTT
Trigger: AGTGGTAGAAACCAATCCAAACGTATTAGTTGCCACGTAGTATCAAAAACTTGTTTTTGTGTCTAGGACTTCTGTTTCGACTTTACAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 90 bp TGTCTAAAGCCAATCTCATTTTCAAAGAGCATACTTAATATGTGGTaGTTTGTACAGAATTGGCAACGCCACAGTGGTCATGTTTCGAAA +
Preference number: 1 (lower is better)
Translates to: CLKPISFSKSILNMW*FVQNWQRHSGHVSK
Trigger: TTTCGAAACATGACCACTGTGGCGTTGCCAATTCTGTACAAATCACCACATATTAAGTATGCTCTTTGAAAATGAGATTGGCTTTAGACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 90 bp GCTTGTCCTTTTCATTTCAATCTAATGCTTAGAGAGTTAAACATATaGTTCAAAACACGGCAATGGTTTCTAATGCCTAAGTCAGTACAT +
Preference number: 1 (lower is better)
Translates to: ACPFHFNLMLRELNI*FKTRQWFLMPKSVH
Trigger: ATGTACTGACTTAGGCATTAGAAACCATTGCCGTGTTTTGAACCATATGTTTAACTCTCTAAGCATTAGATTGAAATGAAAAGGACAAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCCCAGGCAGGGCTCCTaGCACAGGGCTAAGCCAGAG +
Preference number: 2 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNPRQGS*HRAKPE
Trigger: CTCTGGCTTAGCCCTGTGTCAGGAGCCCTGCCTGGG...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTTTGGAAGCAGCCCCCTaGGGATTCCCTGGGGCCCAC +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEILEAAP*GFPGAH
Trigger: GTGGGCCCCAGGGAATCCTCAGGGGGCTGCTTCCAA...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACCCATGCCCTCTGCTCTaGTGGAGAGCTGCACCTCCC +
Preference number: 2 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHPCPLL*WRAAPP
Trigger: GGGAGGTGCAGCTCTCCAGCAGAGCAGAGGGCATGG...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGACTCCCTTCCCGGCCATaGCCTCTGCTCTGCTGGAGA +
Preference number: 2 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGLPSRP*PLLCWR
Trigger: TCTCCAGCAGAGCAGAGGGCATGGCCGGGAAGGGAG...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACGACAGGATTTCTCTCTaGACCCAGGGCTGTCCTGGA +
Preference number: 2 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNDRISL*TQGCPG
Trigger: TCCAGGACAGCCCTGGGTGCAGAGAGAAATCCTGTC...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATCCCGGCCATGCCCTCTaGTCTGCTGGAGAGCTGCAC +
Preference number: 2 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHPGHAL*SAGELH
Trigger: GTGCAGCTCTCCAGCAGAGCAGAGGGCATGGCCGGG...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAGGCCGAGCCCTGCTGTaGCTCACACTCTATAGGCGT +
Preference number: 2 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGGRALL*LTLYRR
Trigger: ACGCCTATAGAGTGTGAGCCACAGCAGGGCTCGGCC...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACGACTCCCATCTCCTGTaGGGACATGGTTACAGATGG +
Preference number: 2 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNDSHLL*GHGYRW
Trigger: CCATCTGTAACCATGTCCTCACAGGAGATGGGAGTC...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACGCTTTCCTGCCATCTTaGCCAACCCAGCGTGACCGT +
Preference number: 2 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHAFLPS*PTQRDR
Trigger: ACGGTCACGCTGGGTTGGGCAAGATGGCAGGAAAGC...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp GGAAAAGGAGGCTGGCCTGAGTCCTGGAATCAGGATTTCACATTCTaGGCACTGGAGACTGGCTTTCCCCAGCTCTACTCTGGAGCCTTC +
Preference number: 2 (lower is better)
Translates to: GKGGWPESWNQDFTF*ALETGFPQLYSGAF
Trigger: GAAGGCTCCAGAGTAGAGCTGGGGAAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCTGATTCCAGGACTCAGGCCAGCCTCCTTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTGAACTCAGGCAGACTTaGCTCTGCCTTCCAAATGCT +
Preference number: 2 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIELRQT*LCLPNA
Trigger: AGCATTTGGAAGGCAGAGGCAAGTCTGCCTGAGTTC...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATTGCCGGGGAGCCTATTaGAAGCAGCCCCCTGAGGAT +
Preference number: 2 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHCRGAY*KQPPED
Trigger: ATCCTCAGGGGGCTGCTTCCAATAGGCTCCCCGGCA...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCACCATCCTGACACTTaGGTGACACTGGAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIHHPDT*VTLEAG
Trigger: CCCTGCCTCCAGTGTCACCCAAGTGTCAGGATGGTG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTTCTCCTGTGAGGACATaGTTACAGATGGGAGGACAA +
Preference number: 2 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTISPVRT*LQMGGQ
Trigger: TTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp TGTTTGTTTCGGGGACACTGGGGTTTGAACCACACTCATTGGACCTaGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGT +
Preference number: 2 (lower is better)
Translates to: CLFRGHWGLNHTHWT*CTLGRLSITEQTSC
Trigger: ACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCGAAACAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTTGGAAACCCTCTaGTGCAGAATGCCACCATTT +
Preference number: 2 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNHLETL*CRMPPF
Trigger: AAATGGTGGCATTCTGCAGCAGAGGGTTTCCAAATG...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGGCCGCCGCCACCTGGTaGCTTTTGAACTTTGACACT +
Preference number: 2 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELAAATW*LLNFDT
Trigger: AGTGTCAAAGTTCAAAAGGCACCAGGTGGCGGCGGC...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATCTTGGCACTGGAGACTaGCTTTCCCCAGCTCTACTC +
Preference number: 2 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHLGTGD*LSPALL
Trigger: GAGTAGAGCTGGGGAAAGCCAGTCTCCAGTGCCAAG...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTAAACCAGCTGGGCAGTaGTGGCACACGCCTTTAATC +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIKPAGQ*WHTPLI
Trigger: GATTAAAGGCGTGTGCCACCACTGCCCAGCTGGTTT...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATAAAAAGGAGGCTGGCCTaGGTCCTGGAATCAGGATTT +
Preference number: 2 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIKRRLA*VLESGF
Trigger: AAATCCTGATTCCAGGACTCAGGCCAGCCTCCTTTT...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTCAGAAAAATAAAAGTTaGGGACCACTGTGGCAAGCA +
Preference number: 2 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIQKNKS*GPLWQA
Trigger: TGCTTGCCACAGTGGTCCTCAACTTTTATTTTTCTG...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCAGGCTCTCTATCACTaGGCAGACCTCTTGTCTGAT +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIQALYH*ADLLSD
Trigger: ATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTGAAAAAGAGCTTTCCTaGCATCTTGCCCAACCCAGC +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIEKELS*HLAQPS
Trigger: GCTGGGTTGGGCAAGATGGCAGGAAAGCTCTTTTTC...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTCCCCTGAGGATTCCCTaGGGCCCACAGGTAAGGGCA +
Preference number: 2 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTPLRIP*GPQVRA
Trigger: TGCCCTTACCTGTGGGCCCCAGGGAATCCTCAGGGG...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGGAGGCCGACCAAATTTaGTGGAACCAAGAGGGTAGT +
Preference number: 2 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELEADQI*WNQEGS
Trigger: ACTACCCTCTTGGTTCCATCAAATTTGGTCGGCCTC...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATACACCCGAATTTGAAATaGTCAGATAGGGAGGGCTTT +
Preference number: 2 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIHPNLK*SDREGF
Trigger: AAAGCCCTCCCTATCTGATCATTTCAAATTCGGGTG...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAAGCAGAGCCAAATCATaGCTTAAGTCCTCCAGAAAA +
Preference number: 2 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGSRAKS*LKSSRK
Trigger: TTTTCTGGAGGACTTAAGTCATGATTTGGCTCTGCT...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGTGTGAGCGTCTTCCATaGGTCACTGTCACAGTGAGG +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILCERLP*VTVTVR
Trigger: CCTCACTGTGACAGTGACTCATGGAAGACGCTCACA...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACTTGGAAACCCTCTGCTaGAGAATGCCACCATTTAAA +
Preference number: 2 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHLETLC*RMPPFK
Trigger: TTTAAATGGTGGCATTCTGCAGCAGAGGGTTTCCAA...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCCGTGGATCTATTCCTaGTTCAAAACTGAACTCCTC +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIPWIYS*FKTELL
Trigger: GAGGAGTTCAGTTTTGAAGCAGGAATAGATCCACGG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGAACGTGGGGAGGTCTTaGGCAGATCAGAAAGCAAAT +
Preference number: 2 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELNVGRS*ADQKAN
Trigger: ATTTGCTTTCTGATCTGCCCAAGACCTCCCCACGTT...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACAATATCAACAAAAAGTaGCAGGGAGGGATATTTTGC +
Preference number: 2 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNNINKK*QGGIFC
Trigger: GCAAAATATCCCTCCCTGCCACTTTTTGTTGATATT...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGAGGCAGACTTGCCTCTaGCTTCCAAATGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILRQTCL*LPNAGI
Trigger: AATCCCAGCATTTGGAAGGCAGAGGCAAGTCTGCCT...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACGAATGTTATATAAAATaGTGTCATGGTAGTGGCAGT +
Preference number: 2 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNECYIK*CHGSGS
Trigger: ACTGCCACTACCATGACAGCATTTTATATAACATTC...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTGAGGGAAAAGGAGGCTaGCCTGAGTCCTGGAATCAG +
Preference number: 2 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTEGKGG*PESWNQ
Trigger: CTGATTCCAGGACTCAGGCCAGCCTCCTTTTCCCTC...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp AGGATAGCAAATGGGAGAGGAGGGATCTGGAAGAGCGTTTTGATCTaGAACAAATCCAGAACCAGAAGGGAGACATTTGGAAACCCTCTG +
Preference number: 2 (lower is better)
Translates to: RIANGRGGIWKSVLI*NKSRTRRETFGNPL
Trigger: CAGAGGGTTTCCAAATGTCTCCCTTCTGGTTCTGGATTTGTTCAAGATCAAAACGCTCTTCCAGATCCCTCCTCTCCCATTTGCTATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp CCTTCATATTCAACTGGTATTCTGAAGTTGAACAGCAGAATAGGATaGGGGGCTTTCAAGCATTTCCATCATCTGAGCAGTGGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: PSYSTGILKLNSRIG*GAFKHFHHLSSGEG
Trigger: CCCCTCCCCACTGCTCAGATGATGGAAATGCTTGAAAGCCCCCAATCCTATTCTGCTGTTCAACTTCAGAATACCAGTTGAATATGAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTTCTCTTCTACACACATaGAATTACAGCCATGACTCT +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEISLLHT*NYSHDS
Trigger: AGAGTCATGGCTGTAATTTCATGTGTGTAGAAGAGA...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACTCTGTGCTCAAAGGGTaGCATTTTAAACTCTCAAAA +
Preference number: 2 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHSVLKG*HFKLSK
Trigger: TTTTGAGAGTTTAAAATGTCACCCTTTGAGCACAGA...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGTCTCGACAACTCTACTaGCCTCCAACAGCACAAAAC +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILSRQLY*PPTAQN
Trigger: GTTTTGTGCTGTTGGAGGGCAGTAGAGTTGTCGAGA...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAGGCAAGCAAACATTCTaGATATCAAAAGGTAATCTG +
Preference number: 2 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGGKQTF*ISKGNL
Trigger: CAGATTACCTTTTGATATGCAGAATGTTTGCTTGCC...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGGCAGGCCCAGAGAAATaGCTTTGGGAGTCTTTGAAT +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILAGPEK*LWESLN
Trigger: ATTCAAAGACTCCCAAAGCCATTTCTCTGGGCCTGC...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCTCACATTCTTGGCACTaGAGACTGGCTTTCCCCAGC +
Preference number: 2 (lower is better)
Translates to: KLRTTVASKHSAYQKVICSHSWH*RLAFPS
Trigger: GCTGGGGAAAGCCAGTCTCCAGTGCCAAGAATGTGA...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCTTAAAGTACAGGACTaGACTTTGGCAAATTGGCTA +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEILKVQD*TLANWL
Trigger: TAGCCAATTTGCCAAAGTCCAGTCCTGTACTTTAAG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTTTCAGGGTCCAGTGCTaGATAGTTTCCAATTCTTTT +
Preference number: 2 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIFRVQC*IVSNSF
Trigger: AAAAGAATTGGAAACTATCCAGCACTGGACCCTGAA...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATAAATGTCTCTAGATTTTaGGGGAAGAGATGTGTAACA +
Preference number: 2 (lower is better)
Translates to: TLCTLGRLSITEQTSCLINVSRF*GKRCVT
Trigger: TGTTACACATCTCTTCCCTCAAAATCTAGAGACATT...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGCCTATCAAGATTGTTTaGAAAAGAGCTTTCCTGCCA +
Preference number: 2 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELPIKIV*KRAFLP
Trigger: TGGCAGGAAAGCTCTTTTTCAAACAATCTTGATAGG...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCGGGAGAGGAGGGATCTaGAAGAGCGTTTTGATCTTG +
Preference number: 2 (lower is better)
Translates to: KLRTTVASKHSAYQKVICGRGGI*KSVLIL
Trigger: CAAGATCAAAACGCTCTTCCAGATCCCTCCTCTCCC...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTGGCTGGCCTGAGTCCTaGAATCAGGATTTCACATTC +
Preference number: 2 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTGWPES*NQDFTF
Trigger: GAATGTGAAATCCTGATTCCAGGACTCAGGCCAGCC...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATCCTTTAACCCAAGTGTaGAAAAACACAGACTTCTTC +
Preference number: 2 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHPLTQV*KNTDFF
Trigger: GAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGG...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGGAAACAAACGCCCAGTaGTCTCTCTTTTTGTCTCTG +
Preference number: 2 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVETNAQ*SLFLSL
Trigger: CAGAGACAAAAAGAGAGAGCACTGGGCGTTTGTTTC...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGAGGATTTCACATTCTTaGCACTGGAGACTGGCTTTC +
Preference number: 2 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVRISHS*HWRLAF
Trigger: GAAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCT...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATAGAGAGTTAAACATATaGTTCAAAACACGGCAATGG +
Preference number: 2 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHRELNI*FKTRQW
Trigger: CCATTGCCGTGTTTTGAACCATATGTTTAACTCTCT...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGATTGAAGCTGTCCTCTaGACTGAATATAAGCTGACA +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILIEAVL*TEYKLT
Trigger: TGTCAGCTTATATTCAGTTCAGAGGACAGCTTCAAT...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGTCACTGTCTTCTTCTTaGGAGAATTTACCAGAGTAC +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILSLSSS*ENLPEY
Trigger: GTACTCTGGTAAATTCTCTCAAGAAGAAGACAGTGA...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTGATAAGCTCTCACAGTaGACGTGGGGAGGTCTTGGG +
Preference number: 2 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEIDKLSQ*TWGGLG
Trigger: CCCAAGACCTCCCCACGTTCACTGTGAGAGCTTATC...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGACTATTGAAATGTTCTaGCTTTATGGCTTGGAATTG +
Preference number: 2 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELTIEMF*LYGLEL
Trigger: CAATTCCAAGCCATAAAGGCAGAACATTTCAATAGT...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGTGGACTTTGGCAAATTaGCTAAGGCACACTAGAAGA +
Preference number: 2 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVWTLAN*LRHTRR
Trigger: TCTTCTAGTGTGCCTTAGCCAATTTGCCAAAGTCCA...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCAGCCACAGCAGGTGTTaGCTTAAACTTGAGTTATTC +
Preference number: 2 (lower is better)
Translates to: KLRTTVASKHSAYQKVICSHSRC*LKLELF
Trigger: GAATAACTCAAGTTTAAGTCAACACCTGCTGTGGCT...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTTTCGGGAATTTAAAGTaGCCAGTGAGAATCTGGCAT +
Preference number: 2 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTFGNLK*PVRIWH
Trigger: ATGCCAGATTCTCACTGGTCACTTTAAATTCCCGAA...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGAGCAGACCTCTTGTCTaGTACATTAGAATGCTTAAT +
Preference number: 2 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILSRPLV*YIRMLN
Trigger: ATTAAGCATTCTAATGTATCAGACAAGAGGTCTGCT...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp CTCTTCCCAAACTCCCTTTCAACTCTTAAAGTACAGGACTGGACTTaGGCAAATTGGCTAAGGCACACTAGAAGAAATAGAAAACTTCCA +
Preference number: 2 (lower is better)
Translates to: LFPNSLSTLKVQDWT*ANWLRHTRRNRKLP
Trigger: TGGAAGTTTTCTATTTCTTCTAGTGTGCCTTAGCCAATTTGCCAAAGTCCAGTCCTGTACTTTAAGAGTTGAAAGGGAGTTTGGGAAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp CTGGAAAAACAACCTGAAGAAACAAACGCCCAGTGCTCTCTCTTTTaGTCTCTGGAAACTAAGAAGATAACAGGTCAGTCAGCAATACTA +
Preference number: 2 (lower is better)
Translates to: LEKQPEETNAQCSLF*SLETKKITGQSAIL
Trigger: TAGTATTGCTGACTGACCTGTTATCTTCTTAGTTTCCAGAGACAAAAAGAGAGAGCACTGGGCGTTTGTTTCTTCAGGTTGTTTTTCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR TCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTATCTGGCATATTTTATaGTTGAAGCTGTCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTIWHIL*LKLSSE
Trigger: TTCAGAGGACAGCTTCAATCATAAAATATGCCAGAT...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTCAGAAGGGAGACATTTaGAAACCCTCTGCTGCAGAA +
Preference number: 2 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEIQKGDI*KPSAAE
Trigger: TTCTGCAGCAGAGGGTTTCCAAATGTCTCCCTTCTG...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTACCAACCTTGGAATTTaGGGTAAAGATCATTCAAAC +
Preference number: 2 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTTNLGI*GKDHSN
Trigger: GTTTGAATGATCTTTACCCCAAATTCCAAGGTTGGT...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCAAGTCTGATAAAATATaGATTCTGTCCTCTCACTGT +
Preference number: 2 (lower is better)
Translates to: KLRTTVASKHSAYQKVICKSDKI*ILSSHC
Trigger: ACAGTGAGAGGACAGAATGCATATTTTATCAGACTT...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 90 bp CCTGTAACTGTCATCTGTAAAGTTCTCTTCTGTTCCTATTTCTTTTaGCCTTTGAAGTTATGCAAAACAAAGCTAACCCTTCTTCCTTTT +
Preference number: 2 (lower is better)
Translates to: PVTVICKVLFCSYFF*PLKLCKTKLTLLPF
Trigger: AAAAGGAAGAAGGGTTAGCTTTGTTTTGCATAACTTCAAAGGCAAAAAGAAATAGGAACAGAAGAGAACTTTACAGATGACAGTTACAGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTCCAGAGAAATGGCTTTaGGAGTCTTTGAATCTTTTA +
Preference number: 2 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEIPEKWL*ESLNLL
Trigger: TAAAAGATTCAAAGACTCCCAAAGCCATTTCTCTGG...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR GCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTTTGCCTTTGAAGTTATaGAAAACAAAGCTAACCCTT +
Preference number: 2 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEILPLKL*KTKLTL
Trigger: AAGGGTTAGCTTTGTTTTGCATAACTTCAAAGGCAA...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp GGGGAGCCTATTGGAAGCAGCCCCCTGAGGATTCCCTaGGGCCCACAGGTAAGGGCACACAGGAAACCCAGG +
Preference number: 3 (lower is better)
Translates to: GEPIGSSPLRIP*GPQVRAHRKPR
Trigger: CCTGGGTTTCCTGTGTGCCCTTACCTGTGGGCCCCAGGGAATCCTCAGGGGGCTGCTTCCAATAGGCTCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp GAGCCCCGCCTTCCTGGCTCAGACTCCCATCTCCTGTaGGGACATGGTTACAGATGGGAGGACAAACACCCG +
Preference number: 3 (lower is better)
Translates to: EPRLPGSDSHLL*GHGYRWEDKHP
Trigger: CGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGATGGGAGTCTGAGCCAGGAAGGCGGGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp GTGACCGTCCCTGGGATAGCTGGCCGGGTTAACCTCTaGGCACTTGCTGCAGCAGGACATCTTACTTTACCC +
Preference number: 3 (lower is better)
Translates to: VTVPGIAGRVNL*ALAAAGHLTLP
Trigger: GGGTAAAGTAAGATGTCCTGCTGCAGCAAGTGCCCAGAGGTTAACCCGGCCAGCTATCCCAGGGACGGTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp CTGGCTGAGCACTCCATCAGATGTGAGCGTCTTCCATaGGTCACTGTCACAGTGAGGAGGCAGAGGCTCACA +
Preference number: 3 (lower is better)
Translates to: LAEHSIRCERLP*VTVTVRRQRLT
Trigger: TGTGAGCCTCTGCCTCCTCACTGTGACAGTGACTCATGGAAGACGCTCACATCTGATGGAGTGCTCAGCCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp AAGCCTCCACTCAGGCGTGTGCTGGCCGATGCATCATaGACAGCTGTTAAAGACCTACCACCACAGATGGAC +
Preference number: 3 (lower is better)
Translates to: KPPLRRVLADAS*TAVKDLPPQMD
Trigger: GTCCATCTGTGGTGGTAGGTCTTTAACAGCTGTGCATGATGCATCGGCCAGCACACGCCTGAGTGGAGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp GGACACTGGGGTTTGAACCACACTCATTGGACCTTGTaGACCCTAGGCAGGCTCTCTATCACTGAGCAGACC +
Preference number: 3 (lower is better)
Translates to: GHWGLNHTHWTL*TLGRLSITEQT
Trigger: GGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CCTTCCTGGCTCAGACTCCCATCTCCTGTGAGGACATaGTTACAGATGGGAGGACAAACACCCGACTCAGCA +
Preference number: 3 (lower is better)
Translates to: PSWLRLPSPVRT*LQMGGQTPDSA
Trigger: TGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGATGGGAGTCTGAGCCAGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp AGCTGTCACAGCATGCCTTACCAACAGCTTAGTGTGTaGCATCTTGTCCCCGCAGGGAAGCTGGCTGCTAAC +
Preference number: 3 (lower is better)
Translates to: SCHSMPYQQLSV*HLVPAGKLAAN
Trigger: GTTAGCAGCCAGCTTCCCTGCGGGGACAAGATGCCACACACTAAGCTGTTGGTAAGGCATGCTGTGACAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp GGTCAGGCTGACTTTGAACTCAGGCAGACTTGCCTCTaGCTTCCAAATGCTGGGATTAAAGGTGTGTGCCGC +
Preference number: 3 (lower is better)
Translates to: GQADFELRQTCL*LPNAGIKGVCR
Trigger: GCGGCACACACCTTTAATCCCAGCATTTGGAAGGCAGAGGCAAGTCTGCCTGAGTTCAAAGTCAGCCTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACTACCTTAAACAGCACTaGAGCAATCCTGGCAGAGCT +
Preference number: 3 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNYLKQH*SNPGRA
Trigger: AGCTCTGCCAGGATTGCTCAAGTGCTGTTTAAGGTA...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp CAGCACTTGAGCAATCCTGGCAGAGCTGAAGACCTTTaGTGTCTATGGCCGCGATGCCCCTTCTTTCCTATA +
Preference number: 3 (lower is better)
Translates to: QHLSNPGRAEDL*CLWPRCPFFPI
Trigger: TATAGGAAAGAAGGGGCATCGCGGCCATAGACAGCAAAGGTCTTCAGCTCTGCCAGGATTGCTCAAGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CTGGAATCAGGATTTCACATTCTTGGCACTGGAGACTaGCTTTCCCCAGCTCTACTCTGGAGCCTTCTGCCT +
Preference number: 3 (lower is better)
Translates to: LESGFHILGTGD*LSPALLWSLLP
Trigger: AGGCAGAAGGCTCCAGAGTAGAGCTGGGGAAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCTGATTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CTGAGTCCTGGAATCAGGATTTCACATTCTTGGCACTaGAGACTGGCTTTCCCCAGCTCTACTCTGGAGCCT +
Preference number: 3 (lower is better)
Translates to: LSPGIRISHSWH*RLAFPSSTLEP
Trigger: AGGCTCCAGAGTAGAGCTGGGGAAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCTGATTCCAGGACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp TTGTTTCGGGGACACTGGGGTTTGAACCACACTCATTaGACCTTGTGCACCCTAGGCAGGCTCTCTATCACT +
Preference number: 3 (lower is better)
Translates to: LFRGHWGLNHTH*TLCTLGRLSIT
Trigger: AGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCGAAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACCTGCTGACACTGATGTaGGAGCTTCTTTTCAGGTCT +
Preference number: 3 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHLLTLM*ELLFRS
Trigger: AGACCTGAAAAGAAGCTCCAACATCAGTGTCAGCAG...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGCGGGGACACTGGGGTTaGAACCACACTCATTGGACC +
Preference number: 3 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILRGHWG*NHTHWT
Trigger: GGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCG...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACTTTAACTTGGAGGTATaGAGGTATTCACACCCCAGT +
Preference number: 3 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNFNLEV*RYSHPS
Trigger: ACTGGGGTGTGAATACCTCAATACCTCCAAGTTAAA...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp TCACTCCTATCAAGATTGTTTGAAAAAGAGCTTTCCTaGCATCTTGCCCAACCCAGCGTGACCGTCCCTGGG +
Preference number: 3 (lower is better)
Translates to: SLLSRLFEKELS*HLAQPSVTVPG
Trigger: CCCAGGGACGGTCACGCTGGGTTGGGCAAGATGGCAGGAAAGCTCTTTTTCAAACAATCTTGATAGGAGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CTAGACTTGAATGTAAGCCTCCACTCAGGCGTGTGCTaGCCGATGCATCATGCACAGCTGTTAAAGACCTAC +
Preference number: 3 (lower is better)
Translates to: LDLNVSLHSGVC*PMHHAQLLKTY
Trigger: GTAGGTCTTTAACAGCTGTGCATGATGCATCGGCCAGCACACGCCTGAGTGGAGGCTTACATTCAAGTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTATCTGGAAGAGCGTTTaGATCTTGAACAAATCCAGA +
Preference number: 3 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIIWKSV*ILNKSR
Trigger: TCTGGATTTGTTCAAGATCAAAACGCTCTTCCAGAT...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACGGGCAGAGGGACTTTTaGTTTCATCTTTTGATTAAG +
Preference number: 3 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNGQRDF*FHLLIK
Trigger: CTTAATCAAAAGATGAAACAAAAAGTCCCTCTGCCC...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTTGGCAACTAATACGTTaGGATTGGTTTCTACCACTT +
Preference number: 3 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIWQLIR*DWFLPL
Trigger: AAGTGGTAGAAACCAATCCAAACGTATTAGTTGCCA...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTTTAATATGTGGTGATTaGTACAGAATTGGCAACGCC +
Preference number: 3 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTILICGD*YRIGNA
Trigger: GGCGTTGCCAATTCTGTACAAATCACCACATATTAA...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp GGTGTGTGCCGCCGCCACCTGGTGCCTTTTGAACTTTaGCACTATTTTAACTACCAACCTTGGAATTTGGGG +
Preference number: 3 (lower is better)
Translates to: GVCRRHLVPFEL*HYFNYQPWNLG
Trigger: CCCCAAATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGCGGCGGCACACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp CCTTTTTATAGCTCTGCGGAAACCCTGGTTGGTAATTaGCCATTACCTCATTCCCCAACTTCCCTGCGCTCC +
Preference number: 3 (lower is better)
Translates to: PFYSSAETLVGN*PLPHSPTSLRS
Trigger: GGAGCGCAGGGAAGTTGGGGAATGAGGTAATGGTCAATTACCAACCAGGGTTTCCGCAGAGCTATAAAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp CCCCCTCTGAGTGTAGAGCACAAGTGTTCCTTGATGTaGATAGGTGACTCTGTAGGTCAGACTCAGCAACAC +
Preference number: 3 (lower is better)
Translates to: PPLSVEHKCSLM*IGDSVGQTQQH
Trigger: GTGTTGCTGAGTCTGACCTACAGAGTCACCTATTCACATCAAGGAACACTTGTGCTCTACACTCAGAGGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp TGGCTAAGGCACACTAGAAGAAATAGAAAACTTCCATaGTCTTGCTTAGGCGACCGCGGGGATGTTACTGGC +
Preference number: 3 (lower is better)
Translates to: WLRHTRRNRKLP*SCLGDRGDVTG
Trigger: GCCAGTAACATCCCCGCGGTCGCCTAAGCAAGAGCATGGAAGTTTTCTATTTCTTCTAGTGTGCCTTAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp ATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACTaGTCAGCTGAGACTCTCAAGGCCTTTAACCCAAGT +
Preference number: 3 (lower is better)
Translates to: MTFTLSTNSSAH*SAETLKAFNPS
Trigger: ACTTGGGTTAAAGGCCTTGAGAGTCTCAGCTGACCAGTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp GCCACTCTTTTCTGTTGTTGTTTGTTTCGGGGACACTaGGGTTTGAACCACACTCATTGGACCTTGTGCACC +
Preference number: 3 (lower is better)
Translates to: ATLFCCCLFRGH*GLNHTHWTLCT
Trigger: GGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCGAAACAAACAACAACAGAAAAGAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp AGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTaGATTGTGGGCTCAGCCACCGACACACTGAAATTC +
Preference number: 3 (lower is better)
Translates to: RKYKPQNGQGIH*IVGSATDTLKF
Trigger: GAATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACGGTGTTGACTTAAACTaGAGTTATTCGGGAAGACAC +
Preference number: 3 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHGVDLN*SYSGRH
Trigger: GTGTCTTCCCGAATAACTCAAGTTTAAGTCAACACC...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGCAGGATTTCACATTCTaGGCACTGGAGACTGGCTTT +
Preference number: 3 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELQDFTF*ALETGF
Trigger: AAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCTG...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACAGTCAGCTCATTCTCTaGTTTTTCTACCCTTTAACA +
Preference number: 3 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNSQLIL*FFYPLT
Trigger: TGTTAAAGGGTAGAAAAACAAGAGAATGAGCTGACT...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp ATCTGTAGACTTAAGCTGCAACACCCGAATTTGAAATaGTCAGATAGGGAGGGCTTTGCCACAGAGCGCCCT +
Preference number: 3 (lower is better)
Translates to: ICRLKLQHPNLK*SDREGFATERP
Trigger: AGGGCGCTCTGTGGCAAAGCCCTCCCTATCTGATCATTTCAAATTCGGGTGTTGCAGCTTAAGTCTACAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp TGGGGCTTAGACAGCCTCACTCCTATCAAGATTGTTTaGAAAAGAGCTTTCCTGCCATCTTGCCCAACCCAG +
Preference number: 3 (lower is better)
Translates to: WGLDSLTPIKIV*KRAFLPSCPTQ
Trigger: CTGGGTTGGGCAAGATGGCAGGAAAGCTCTTTTTCAAACAATCTTGATAGGAGTGAGGCTGTCTAAGCCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp CAATTAAGGAGCACTCATGAGGATAAGCTCTCACAGTaGACGTGGGGAGGTCTTGGGCAGATCAGAAAGCAA +
Preference number: 3 (lower is better)
Translates to: QLRSTHEDKLSQ*TWGGLGQIRKQ
Trigger: TTGCTTTCTGATCTGCCCAAGACCTCCCCACGTTCACTGTGAGAGCTTATCCTCATGAGTGCTCCTTAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp AAGCCCAACTTTTTCCTCCACAAAGCTGTCACAGCATaGCTTACCAACAGCTTAGTGTGTGGCATCTTGTCC +
Preference number: 3 (lower is better)
Translates to: KPNFFLHKAVTA*LTNSLVCGILS
Trigger: GGACAAGATGCCACACACTAAGCTGTTGGTAAGGCATGCTGTGACAGCTTTGTGGAGGAAAAAGTTGGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCCCAGAGAAATGGCTTaGGGAGTCTTTGAATCTTTT +
Preference number: 3 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIPREMA*GVFESF
Trigger: AAAAGATTCAAAGACTCCCAAAGCCATTTCTCTGGG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGGAACGTGGGGAGGTCTaGGGCAGATCAGAAAGCAAA +
Preference number: 3 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVERGEV*GRSESK
Trigger: TTTGCTTTCTGATCTGCCCAAGACCTCCCCACGTTC...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCCCAGAAGGGAGACATTaGGAAACCCTCTGCTGCAGA +
Preference number: 3 (lower is better)
Translates to: KLRTTVASKHSAYQKVICPEGRH*ETLCCR
Trigger: TCTGCAGCAGAGGGTTTCCAAATGTCTCCCTTCTGG...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTACTGGTATTCTGAAGTaGAACAGCAGAATAGGATTG +
Preference number: 3 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEITGILK*NSRIGL
Trigger: CAATCCTATTCTGCTGTTCAACTTCAGAATACCAGT...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp TTGGACCTTGTGCACCCTAGGCAGGCTCTCTATCACTaGGCAGACCTCTTGTCTGATACATTAGAATGCTTA +
Preference number: 3 (lower is better)
Translates to: LDLVHPRQALYH*ADLLSDTLECL
Trigger: TAAGCATTCTAATGTATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp AGGCTCACAGGTTTGTTTGATTGGCAGCAACGAAACTaGATCAATAGCGTAACTGTGGACAGCACCTGTGTC +
Preference number: 3 (lower is better)
Translates to: RLTGLFDWQQRN*INSVTVDSTCV
Trigger: GACACAGGTGCTGTCCACAGTTACGCTATTGATTCAGTTTCGTTGCTGCCAATCAAACAAACCTGTGAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp ATGCTGGGATTAAAGGTGTGTGCCGCCGCCACCTGGTaGCTTTTGAACTTTGACACTATTTTAACTACCAAC +
Preference number: 3 (lower is better)
Translates to: MLGLKVCAAATW*LLNFDTILTTN
Trigger: GTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGCGGCGGCACACACCTTTAATCCCAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CAAATGCTGGGATTAAAGGTGTGTGCCGCCGCCACCTaGTGCCTTTTGAACTTTGACACTATTTTAACTACC +
Preference number: 3 (lower is better)
Translates to: QMLGLKVCAAAT*CLLNFDTILTT
Trigger: GGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGCGGCGGCACACACCTTTAATCCCAGCATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp GGTCAGCTGAGACTCTCAAGGCCTTTAACCCAAGTGTaGAAAAACACAGACTTCTTCTCGACAACTCTACTG +
Preference number: 3 (lower is better)
Translates to: GQLRLSRPLTQV*KNTDFFSTTLL
Trigger: CAGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTTGAGAGTCTCAGCTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGCTAGGCCCATGCAGCTaGTCCTTTTCATTTCAATCT +
Preference number: 3 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILLGPCS*SFSFQS
Trigger: AGATTGAAATGAAAAGGACAAGCTGCATGGGCCTAG...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGGGCCTTCTCTCTCACTaGGCTTTGCTAAAATTGCAG +
Preference number: 3 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVGLLSH*ALLKLQ
Trigger: CTGCAATTTTAGCAAAGCCAAGTGAGAGAGAAGGCC...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp ATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTaGCCTTCATATTCAACTGGTATTCTGAAGTTGAAC +
Preference number: 3 (lower is better)
Translates to: IHTPVSTWETAL*PSYSTGILKLN
Trigger: GTTCAACTTCAGAATACCAGTTGAATATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp TTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTaGCCTCTGACCTTCATATTCAACTGGTATTCTGAA +
Preference number: 3 (lower is better)
Translates to: LRYSHPSIHLGD*PLTFIFNWYSE
Trigger: TTCAGAATACCAGTTGAATATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp CATATGGACCTTACAGAAATGGAGGGTGAAGAAGGATaGTCCTCCATTCCAAACACCAATCCTGATGAACCT +
Preference number: 3 (lower is better)
Translates to: HMDLTEMEGEEG*SSIPNTNPDEP
Trigger: AGGTTCATCAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAAGGTCCATATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CACTTGGGAGACTGCCCTCTGACCTTCATATTCAACTaGTATTCTGAAGTTGAACAGCAGAATAGGATTGGG +
Preference number: 3 (lower is better)
Translates to: HLGDCPLTFIFN*YSEVEQQNRIG
Trigger: CCCAATCCTATTCTGCTGTTCAACTTCAGAATACCAGTTGAATATGAAGGTCAGAGGGCAGTCTCCCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGCACTCTTTTCTGTTGTaGTTTGTTTCGGGGACACTG +
Preference number: 3 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVHSFLL*FVSGTL
Trigger: CAGTGTCCCCGAAACAAACAACAACAGAAAAGAGTG...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGGCTTGGAATTGTAAGTaGACATATGCATGCTCTTCC +
Preference number: 3 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILAWNCK*TYACSS
Trigger: GGAAGAGCATGCATATGTCAACTTACAATTCCAAGC...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp ACCGACACACTGAAATTCATATGGACCTTACAGAAATaGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACA +
Preference number: 3 (lower is better)
Translates to: TDTLKFIWTLQK*RVKKDAPPFQT
Trigger: TGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAAGGTCCATATGAATTTCAGTGTGTCGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGATGTCCAGTTTTTATTaGCCTTTTTCCAGGTTCTGC +
Preference number: 3 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILMSSFY*PFSRFC
Trigger: GCAGAACCTGGAAAAAGGCAAATAAAAACTGGACAT...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp CATCCTAACATCCTAACATCTTTAACTTGGAGGTATTaGGGTATTCACACCCCAGTATCCACTTGGGAGACT +
Preference number: 3 (lower is better)
Translates to: HPNILTSLTWRY*GIHTPVSTWET
Trigger: AGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAATACCTCCAAGTTAAAGATGTTAGGATGTTAGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp GATCTTGAACAAATCCAGAACCAGAAGGGAGACATTTaGAAACCCTCTGCTGCAGAATGCCACCATTTAAAA +
Preference number: 3 (lower is better)
Translates to: DLEQIQNQKGDI*KPSAAECHHLK
Trigger: TTTTAAATGGTGGCATTCTGCAGCAGAGGGTTTCCAAATGTCTCCCTTCTGGTTCTGGATTTGTTCAAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp ACACACATACACACACACACCTCTGTGCTCAAAGGGTaGCATTTTAAACTCTCAAAATACAGGTCTTCCCAT +
Preference number: 3 (lower is better)
Translates to: THIHTHTSVLKG*HFKLSKYRSSH
Trigger: ATGGGAAGACCTGTATTTTGAGAGTTTAAAATGTCACCCTTTGAGCACAGAGGTGTGTGTGTGTATGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp GTAATGACCCTAAGCACAGTAGAGGCCGACCAAATTTaGTGGAACCAAGAGGGTAGTCCATACTTAAAAATT +
Preference number: 3 (lower is better)
Translates to: VMTLSTVEADQI*WNQEGSPYLKI
Trigger: AATTTTTAAGTATGGACTACCCTCTTGGTTCCATCAAATTTGGTCGGCCTCTACTGTGCTTAGGGTCATTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp ACACACACCACACACACATACACACACACACCTCTGTaGTCAAAGGGTGACATTTTAAACTCTCAAAATACA +
Preference number: 3 (lower is better)
Translates to: THTTHTYTHTPL*SKGDILNSQNT
Trigger: TGTATTTTGAGAGTTTAAAATGTCACCCTTTGAGCACAGAGGTGTGTGTGTGTATGTGTGTGTGGTGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGTCACTCCTATCAAGATaGTTTGAAAAAGAGCTTTCC +
Preference number: 3 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVSLLSR*FEKELS
Trigger: GGAAAGCTCTTTTTCAAACAATCTTGATAGGAGTGA...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp GTGTTACATTTCTCAGGAACAGAGCTTCTAGGGACATaGACTCCTGATCTCAACTATGTTTCTAAACAGAGA +
Preference number: 3 (lower is better)
Translates to: VLHFSGTELLGT*TPDLNYVSKQR
Trigger: TCTCTGTTTAGAAACATAGTTGAGATCAGGAGTTCATGTCCCTAGAAGCTCTGTTCCTGAGAAATGTAACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp GCCTTTATGGCTTGGAATTGTAAGTTGACATATGCATaGTCTTCCCAAACTCCCTTTCAACTCTTAAAGTAC +
Preference number: 3 (lower is better)
Translates to: AFMAWNCKLTYA*SSQTPFQLLKY
Trigger: GTACTTTAAGAGTTGAAAGGGAGTTTGGGAAGAGCATGCATATGTCAACTTACAATTCCAAGCCATAAAGGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp TTGCTGGAAAAACAACCTGAAGAAACAAACGCCCAGTaGTCTCTCTTTTTGTCTCTGGAAACTAAGAAGATA +
Preference number: 3 (lower is better)
Translates to: LLEKQPEETNAQ*SLFLSLETKKI
Trigger: TATCTTCTTAGTTTCCAGAGACAAAAAGAGAGAGCACTGGGCGTTTGTTTCTTCAGGTTGTTTTTCCAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp CCAATCTCATTTTCAAAGAGCATACTTAATATGTGGTaGTTTGTACAGAATTGGCAACGCCACAGTGGTCAT +
Preference number: 3 (lower is better)
Translates to: PISFSKSILNMW*FVQNWQRHSGH
Trigger: ATGACCACTGTGGCGTTGCCAATTCTGTACAAATCACCACATATTAAGTATGCTCTTTGAAAATGAGATTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp CTTAGAGAGTTAAACATATGGTTCAAAACACGGCAATaGTTTCTAATGCCTAAGTCAGTACATAGCTCACTG +
Preference number: 3 (lower is better)
Translates to: LRELNIWFKTRQ*FLMPKSVHSSL
Trigger: CAGTGAGCTATGTACTGACTTAGGCATTAGAAACCATTGCCGTGTTTTGAACCATATGTTTAACTCTCTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR TCA 72 bp GTCGAAACAGAAGTCCTAGACACAAAAACAAGTTTTTaGTACTACGTGGCAACTAATACGTTTGGATTGGTT +
Preference number: 3 (lower is better)
Translates to: VETEVLDTKTSF*YYVATNTFGLV
Trigger: AACCAATCCAAACGTATTAGTTGCCACGTAGTATCAAAAACTTGTTTTTGTGTCTAGGACTTCTGTTTCGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR GCA 72 bp ATAAAAGTTGAGGACCACTGTGGCAAGCAAACATTCTaGATATCAAAAGGTAATCTGCCCAACTATATGTTT +
Preference number: 3 (lower is better)
Translates to: IKVEDHCGKQTF*ISKGNLPNYMF
Trigger: AAACATATAGTTGGGCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTTTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp GTAAGAATCATACTGACATGGAATATCAACAAAAAGTaGCAGGGAGGGATATTTTGCGAAACAACCCATAAA +
Preference number: 3 (lower is better)
Translates to: VRIILTWNINKK*QGGIFCETTHK
Trigger: TTTATGGGTTGTTTCGCAAAATATCCCTCCCTGCCACTTTTTGTTGATATTCCATGTCAGTATGATTCTTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR-3UTR CAA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTTCCTATCAAGATTGTTaGAAAAAGAGCTTTCCTGCC +
Preference number: 3 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEISYQDC*KKSFPA
Trigger: GGCAGGAAAGCTCTTTTTCAAACAATCTTGATAGGA...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp AACATAGTACTATTGAAATGTTCTGCCTTTATGGCTTaGAATTGTAAGTTGACATATGCATGCTCTTCCCAA +
Preference number: 3 (lower is better)
Translates to: NIVLLKCSAFMA*NCKLTYACSSQ
Trigger: TTGGGAAGAGCATGCATATGTCAACTTACAATTCCAAGCCATAAAGGCAGAACATTTCAATAGTACTATGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp AACTTTGACACTATTTTAACTACCAACCTTGGAATTTaGGGTAAAGATCATTCAAACACAGCTTTTACAACG +
Preference number: 3 (lower is better)
Translates to: NFDTILTTNLGI*GKDHSNTAFTT
Trigger: CGTTGTAAAAGCTGTGTTTGAATGATCTTTACCCCAAATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CCA 72 bp TCCTATAGCTTCGTACTAAATTTCAGGGTCCAGTGCTaGATAGTTTCCAATTCTTTTCATACTGAAATTTAT +
Preference number: 3 (lower is better)
Translates to: SYSFVLNFRVQC*IVSNSFHTEIY
Trigger: ATAAATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAGTACGAAGCTATAGGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTGGTGGCCCTCCAGGGTaGGGCCTCGATTACAGAAGG +
Preference number: 4 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIGGPPG*GLDYRR
Trigger: CCTTCTGTAATCGAGGCCCCACCCTGGAGGGCCACC...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGAGGCCAGGTCAGGTGTaGGCTGCACGGGGCTCCCCG +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELRPGQV*AARGSP
Trigger: CGGGGAGCCCCGTGCAGCCCACACCTGACCTGGCCT...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATATCCCGTTCCGCTGCGTaGGCCACAGCAGGTTTGGGC +
Preference number: 4 (lower is better)
Translates to: TLCTLGRLSITEQTSCLISRSAA*ATAGLG
Trigger: GCCCAAACCTGCTGTGGCCCACGCAGCGGAACGGGA...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCCACTCGCTGGGCACTaGGTAGCGGACCATTACGTT +
Preference number: 4 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNPLAGH*VADHYV
Trigger: AACGTAATGGTCCGCTACCCAGTGCCCAGCGAGTGG...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACTGGTGGTGGTGGGCATaGTGTCCTGCCGGGAAACGA +
Preference number: 4 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHWWWWA*CPAGKR
Trigger: TCGTTTCCCGGCAGGACATCATGCCCACCACCACCA...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTACCCACTCTGACTGGTaGGTGGCAATGACATGGTCC +
Preference number: 4 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTITHSDW*VAMTWS
Trigger: GGACCATGTCATTGCCACCCACCAGTCAGAGTGGGT...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACATGCCCATTCATGGCTaGACTGCCTGCCCACCAACT +
Preference number: 4 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNMPIHG*TACPPT
Trigger: AGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCAT...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGTTGGCCACCCGTCCCTaGGCTGAGAGAGCGCTGAGG +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELLATRP*AERALR
Trigger: CCTCAGCGCTCTCTCAGCCCAGGGACGGGTGGCCAA...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp CGGGGACACTGGGGTTTGAACCACACTCATTGGACCTaGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: RGHWGLNHTHWT*CTLGRLSITEQ
Trigger: CTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACATGACCCAGTTGAGTTaGAAGGTACATCTGGGGCGG +
Preference number: 4 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNMTQLS*KVHLGR
Trigger: CCGCCCCAGATGTACCTTTCAACTCAACTGGGTCAT...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTGGGCTGGCTTTTGCCTaGATCATCAAAGCTGATGGC +
Preference number: 4 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIGLAFA*IIKADG
Trigger: GCCATCAGCTTTGATGATTCAGGCAAAAGCCAGCCC...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATAGGTGGAGCGGCAGGATaGCCATTCATGGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIGGAAG*PFMAGL
Trigger: CAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACC...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTATCTGGGGCGGCAGTTaGGGCAGATGGGGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIIWGGS*GRWGVW
Trigger: CCAAACACCCCATCTGCCGCAACTGCCGCCCCAGAT...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGATCCATGAGACGGTCCTaGACCGCATGGATGAAGCTC +
Preference number: 4 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGSMRRS*TAWMKL
Trigger: GAGCTTCATCCATGCGGTTCAGGACCGTCTCATGGA...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACGTAAGTTCATCAGTGTaGTCTTGGGACGGTCCCTCT +
Preference number: 4 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNVSSSV*SWDGPS
Trigger: AGAGGGACCGTCCCAAGAGCACACTGATGAACTTAC...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATCTGTTCCCGTTCCGCTaGGTGGGCCACAGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHLFPFR*VGHSRF
Trigger: AAACCTGCTGTGGCCCACGCAGCGGAACGGGAACAG...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATACTCCCTTGCCCACTGTaGCAGAGAACTCGTCTCGGA +
Preference number: 4 (lower is better)
Translates to: TLCTLGRLSITEQTSCLILPCPL*QRTRLG
Trigger: TCCGAGACGAGTTCTCTGGCACAGTGGGCAAGGGAG...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATAGGCCAGGTCAGGTGTaGGCTGCACGGGGCTCCCCG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADRPGQV*AARGSP
Trigger: CGGGGAGCCCCGTGCAGCCCACACCTGACCTGGCCT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTACTTCTTCATCTTCCTaGAGGGAGGACGAGTTGTCG +
Preference number: 4 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTITSSSS*REDELS
Trigger: CGACAACTCGTCCTCCCTCCAGGAAGATGAAGAAGT...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGCAGGATGCCCATTCATaGCTGGACTGCCTGCCCACC +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELQDAHS*LDCLPT
Trigger: GGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTG...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCATTCAGGAAAGGATTaGTGGCCCTCCAGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIHSGKD*WPSRVG
Trigger: CCCCACCCTGGAGGGCCACCAATCCTTTCCTGAATG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp GGCTGGCCTGAGTCCTGGAATCAGGATTTCACATTCTaGGCACTGGAGACTGGCTTTCCCCAGCTCTACTCT +
Preference number: 4 (lower is better)
Translates to: GWPESWNQDFTF*ALETGFPQLYS
Trigger: AGAGTAGAGCTGGGGAAAGCCAGTCTCCAGTGCCAAGAATGTGAAATCCTGATTCCAGGACTCAGGCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp ACAGCATGCCTTACCAACAGCTTAGTGTGTGGCATCTaGTCCCCGCAGGGAAGCTGGCTGCTAACAGTACCT +
Preference number: 4 (lower is better)
Translates to: TACLTNSLVCGI*SPQGSWLLTVP
Trigger: AGGTACTGTTAGCAGCCAGCTTCCCTGCGGGGACAAGATGCCACACACTAAGCTGTTGGTAAGGCATGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTACTGGTGGGTGGCAATaGCATGGTCCAAGGTCGTCA +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEITGGWQ*HGPRSS
Trigger: TGACGACCTTGGACCATGTCATTGCCACCCACCAGT...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp GCCACCTGGTGCCTTTTGAACTTTGACACTATTTTAACTACCAACCTTGGAATTAGGTCAGGTGTGGGCTaGACGGGGCTCCCCGGAGGG +
Preference number: 4 (lower is better)
Translates to: ATWCLLNFDTILTTNLGIRSGVG*TGLPGG
Trigger: CCCTCCGGGGAGCCCCGTGCAGCCCACACCTGACCT...AATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTTGTGAGGTGGTGAGGTaGTGCTCCAGGGTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEICEVVR*CSRVCH
Trigger: ATGACACACCCTGGAGCAGCACCTCACCACCTCACA...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAGAGCTCAAACCGGCATaGGTCCAAAGGGTTGAACAG +
Preference number: 4 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGELKPA*VQRVEQ
Trigger: CTGTTCAACCCTTTGGACGCATGCCGGTTTGAGCTC...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATAGGCAGAACCAAAACTTaGCCCCCGGTTCACTTTGGC +
Preference number: 4 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIGRTKT*PPVHFG
Trigger: GCCAAAGTGAACCGGGGGGCAAGTTTTGGTTCTGCC...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATAGGCAGTTGCGGCAGATaGGGTGTTTGGCTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIGSCGR*GVWLLW
Trigger: CCAAAGAAGCCAAACACCCCATCTGCCGCAACTGCC...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ATACACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACTTTTGCCGGTGGTACTaGAAACGGAACTGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: IHECWRRGRGIHDTQGTNFCRWY*KRNCFG
Trigger: CCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAA...GTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGTCGTCCACGCACCCGTaGAAACGGCACTCGTGGAGC +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILSSTHP*KRHSWS
Trigger: GCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGA...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp TTTGTTTCGGGGACACTGGGGTTTGAACCACACTCATaGGACCTTGTGCACCCTAGGCAGGCTCTCTATCAC +
Preference number: 4 (lower is better)
Translates to: FVSGTLGFEPHS*DLVHPRQALYH
Trigger: GTGATAGAGAGCCTGCCTAGGGTGCACAAGGTCCAATGAGTGTGGTTCAAACCCCAGTGTCCCCGAAACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACCAATTTGGAGTTGCTTaGGCTTTTCGATGGCGTCGG +
Preference number: 4 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHQFGVA*AFRWRR
Trigger: CCGACGCCATCGAAAAGCTCAAGCAACTCCAAATTG...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTATCCGTGTCAAGACATaGTGCTGTAAGATCTGGTTG +
Preference number: 4 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIIRVKT*CCKIWL
Trigger: CAACCAGATCTTACAGCATCATGTCTTGACACGGAT...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATGAGGTGGTGAGGTGCTaGTCCAGGGTGTGTCATCTT +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHEVVRC*SRVCHL
Trigger: AAGATGACACACCCTGGAGCAGCACCTCACCACCTC...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGGGAAGCCCTGCCGCTTaGCTGTTCCTCGGTATTGAT +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELGSPAA*LFLGID
Trigger: ATCAATACCGAGGAACAGGCAAGCGGCAGGGCTTCC...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAGAGGGCTGTACGTCCTaGAGAGTCTCATTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGEGCTS*RVSFRK
Trigger: TTTCCTGAATGAGACTCTGCAGGACGTACAGCCCTC...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGCACGGATCTCACGGCTaGTTTGGAGGCAGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELHGSHG*FGGRSR
Trigger: ACGACTTCTGCCTCCAAAGCAGCCGTGAGATCCGTG...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGGAGACCCACTCTGACTaGTGGGTGGCAATGACATGG +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELETHSD*WVAMTW
Trigger: CCATGTCATTGCCACCCACCAGTCAGAGTGGGTCTC...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTTGGCCACCCGTCCCTaGGCTGAGAGAGCGCTGAGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADLATRP*AERALR
Trigger: CCTCAGCGCTCTCTCAGCCCAGGGACGGGTGGCCAA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTCCCGTTCCGCTGCGTaGGCCACAGCAGGTTTGGGC +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADSRSAA*ATAGLG
Trigger: GCCCAAACCTGCTGTGGCCCACGCAGCGGAACGGGA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGGAAGGAGACCCACTCTaGCTGGTGGGTGGCAATGAC +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILEGDPL*LVGGND
Trigger: GTCATTGCCACCCACCAGTCAGAGTGGGTCTCCTTC...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTGGCAGATCTCCAGCTTaGATTCCCGGAATGGCTTTT +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIGRSPA*IPGMAF
Trigger: AAAAGCCATTCCGGGAATTCAAGCTGGAGATCTGCC...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTCTAGAACGCTGTCCCTaGGGAAGTTTTTCACCCACT +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEILERCP*GSFSPT
Trigger: AGTGGGTGAAAAACTTCCGCAGGGACAGCGTTCTAG...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATAGGGGTGGGGAACAATaGCTCTTCACTGAAGGAGAC +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHRGGEQ*LFTEGD
Trigger: GTCTCCTTCAGTGAAGAGCCATTGTTCCCCACCCCT...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGGTGGCCCTCCAGGGTaGGGCCTCGATTACAGAAGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADGGPPG*GLDYRR
Trigger: CCTTCTGTAATCGAGGCCCCACCCTGGAGGGCCACC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGTCGATGGCGTCGGGGTaGGGCTGGCTTTTGCCTGAA +
Preference number: 4 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVSMASG*GWLLPE
Trigger: TTCAGGCAAAAGCCAGCCCCACCCCGACGCCATCGA...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGAGGCGTGCTCATACTTaGCCGTTCCCAGAGTTACTC +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELRRAHT*PFPELL
Trigger: GAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCT...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAAAGAAACAGTGTGGGTaGCCAGAAGCTGAGTTCTTG +
Preference number: 4 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGKKQCG*PEAEFL
Trigger: CAAGAACTCAGCTTCTGGCCACCCACACTGTTTCTT...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATACATAGTTGGCAAATCTaGAAGGCACTTCCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIHSWQI*KALPGQ
Trigger: CTGACCGGGAAGTGCCTTCCAGATTTGCCAACTATG...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACTACCCCACATTCCTTTaGGTTTTCCAAGTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHYPTFL*VFQVLS
Trigger: GGAGAGGACTTGGAAAACCCAAAGGAATGTGGGGTA...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACCAGTTGCTGATGGCTaGGGCCAGGTCAGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAPVADG*GQVRCG
Trigger: CCCACACCTGACCTGGCCTCAGCCATCAGCAACTGG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATTGCCTGCCCACCAACTaGTGGCTTCCATTTCTACTT +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHCLPTN*WLPFLL
Trigger: AAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGGCA...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTCCCCGGAGGGGAGGCTaGTTCAGAGATGAGTCCCAT +
Preference number: 4 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTPRRGG*FRDESH
Trigger: ATGGGACTCATCTCTGAAGCAGCCTCCCCTCCGGGG...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGGTGGAGCGGCAGGATaGCCATTCATGGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADGGAAG*PFMAGL
Trigger: CAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATATCTGGGGCGGCAGTTaGGGCAGATGGGGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADIWGGS*GRWGVW
Trigger: CCAAACACCCCATCTGCCGCAACTGCCGCCCCAGAT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATTGGGAGCGCCTTTCCTaGTCTTCAAAGAAAGCACTG +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHWERLS*SSKKAL
Trigger: CAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCA...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATCTGTTCCCGTTCCGCTaGGTGGGCCACAGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADLFPFR*VGHSRF
Trigger: AAACCTGCTGTGGCCCACGCAGCGGAACGGGAACAG...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTTTTGGCTTTTGCCGGTaGTACTGGAAACGGAACTGT +
Preference number: 4 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIFGFCR*YWKRNC
Trigger: ACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAA...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTCGATGGCGTCGGGGTaGGGCTGGCTTTTGCCTGAA +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADSMASG*GWLLPE
Trigger: TTCAGGCAAAAGCCAGCCCCACCCCGACGCCATCGA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TCTCCTGTGAGGACATGGTTACAGATGGGAGGACAAACACCCGACTCAGCAGGAACAGCAGGTTTGGGCTaGTATTTCTTCTTCTCCTTG +
Preference number: 4 (lower is better)
Translates to: SPVRTWLQMGGQTPDSAGTAGLG*YFFFSL
Trigger: CAAGGAGAAGAAGAAATACCAGCCCAAACCTGCTGT...TCCTGCTGAGTCGGGTGTTTGTCCTCCCATCTGTAACCATGTCCTCACAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCGTCCACGCACCCGTaGAAACGGCACTCGTGGAGC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASSTHP*KRHSWS
Trigger: GCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGCTGAATCATCAAAGCTaGTGGCATCCTGGTAGACGA +
Preference number: 4 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELLNHQS*WHPGRR
Trigger: TCGTCTACCAGGATGCCATCAGCTTTGATGATTCAG...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATGGTGGTGGTGGGCATaGTGTCCTGCCGGGAAACGA +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAWWWWA*CPAGKR
Trigger: TCGTTTCCCGGCAGGACATCATGCCCACCACCACCA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACCAGAGTTACTCTCATaGCGGGCTCGGAGCCAGAGG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAPELLS*RARSQR
Trigger: CCTCTGGCTCCGAGCCCGTCATGAGAGTAACTCTGG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACCCCGGAGGGGAGGCTaGTTCAGAGATGAGTCCCAT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAPRRGG*FRDESH
Trigger: ATGGGACTCATCTCTGAAGCAGCCTCCCCTCCGGGG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACTCATCAATTTGGAGTTaGTTGAGCTTTTCGATGGCG +
Preference number: 4 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHSSIWS*LSFSMA
Trigger: CGCCATCGAAAAGCTCAAGCAACTCCAAATTGATGA...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATCTCCCTTGCCCACTGTaGCAGAGAACTCGTCTCGGA +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADLPCPL*QRTRLG
Trigger: TCCGAGACGAGTTCTCTGGCACAGTGGGCAAGGGAG...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGTCTGGTTGTCTCCCTTaGCCACTGTGCCAGAGAACT +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILSGCLP*PLCQRT
Trigger: AGTTCTCTGGCACAGTGGGCAAGGGAGACAACCAGA...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGATGGAGTTGAAGGCGTaGTCATACTTGGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILMELKA*SYLAVP
Trigger: GGGAACGGCCAAGTATGAGCACGCCTTCAACTCCAT...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATGTGTCATCTTCAAACTaGACCCAGTTGCTGATGGCT +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHVSSSN*TQLLMA
Trigger: AGCCATCAGCAACTGGGTCCAGTTTGAAGATGACAC...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCAGGAAGGAGCAACGCTaGGACTGCTGGTGTCCTCAG +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICRKEQR*DCWCPQ
Trigger: CTGAGGACACCAGCAGTCCCAGCGTTGCTCCTTCCT...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATAGGAAGGAGCAACGCTaGGACTGCTGGTGTCCTCAG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADRKEQR*DCWCPQ
Trigger: CTGAGGACACCAGCAGTCCCAGCGTTGCTCCTTCCT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACAGGATGCCCATTCATaGCTGGACTGCCTGCCCACC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAQDAHS*LDCLPT
Trigger: GGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTTTTTCACCCACTCGCTaGGCACTGGGTAGCGGACCA +
Preference number: 4 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTFSPTR*ALGSGP
Trigger: TGGTCCGCTACCCAGTGCCCAGCGAGTGGGTGAAAA...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp CTGGGGCTTAGACAGCCTCACTCCTATCAAGATTGTTaGAAAAAGAGCTTTCCTGCCATCTTGCCCAACCCA +
Preference number: 4 (lower is better)
Translates to: LGLRQPHSYQDC*KKSFPAILPNP
Trigger: TGGGTTGGGCAAGATGGCAGGAAAGCTCTTTTTCAAACAATCTTGATAGGAGTGAGGCTGTCTAAGCCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp TTGGAGGTATTGAGGTATTCACACCCCAGTATCCACTaGGGAGACTGCCCTCTGACCTTCATATTCAACTGG +
Preference number: 4 (lower is better)
Translates to: LEVLRYSHPSIH*GDCPLTFIFNW
Trigger: CCAGTTGAATATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAATACCTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGAAGGAGACCCACTCTaGCTGGTGGGTGGCAATGAC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAEGDPL*LVGGND
Trigger: GTCATTGCCACCCACCAGTCAGAGTGGGTCTCCTTC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCATCCTGCTCAGAGTGTaGAAGGTCCTGGGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICILLRV*KVLGAF
Trigger: GAAGGCTCCCAGGACCTTTCACACTCTGAGCAGGAT...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGCGCTGGCTGTCAGTTTaGTGTAGATTGGTCCCCAGT +
Preference number: 4 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVRWLSV*CRLVPS
Trigger: ACTGGGGACCAATCTACATCAAACTGACAGCCAGCG...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGTCTTCTCCTTGTAAGTaGCCCGGTCTATCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILSSPCK*PGLSSS
Trigger: GCTTGAGGATAGACCGGGTCACTTACAAGGAGAAGA...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTTTCTCACAGGGAACCTaGGTGAGAGGGTCGCGGTTA +
Preference number: 4 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTFSQGT*VRGSRL
Trigger: TAACCGCGACCCTCTCACTCAGGTTCCCTGTGAGAA...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTTCTCACAGGGAACCTaGGTGAGAGGGTCGCGGTTA +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADFSQGT*VRGSRL
Trigger: TAACCGCGACCCTCTCACTCAGGTTCCCTGTGAGAA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATACCCACTCTGACTGGTaGGTGGCAATGACATGGTCC +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADTHSDW*VAMTWS
Trigger: GGACCATGTCATTGCCACCCACCAGTCAGAGTGGGT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGAGACCCACTCTGACTaGTGGGTGGCAATGACATGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADETHSD*WVAMTW
Trigger: CCATGTCATTGCCACCCACCAGTCAGAGTGGGTCTC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATATGCCCATTCATGGCTaGACTGCCTGCCCACCAACT +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADMPIHG*TACPPT
Trigger: AGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCAT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGGCAGTTGCGGCAGATaGGGTGTTTGGCTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADGSCGR*GVWLLW
Trigger: CCAAAGAAGCCAAACACCCCATCTGCCGCAACTGCC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACATTCAGGAAAGGATTaGTGGCCCTCCAGGGTGGGG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAHSGKD*WPSRVG
Trigger: CCCCACCCTGGAGGGCCACCAATCCTTTCCTGAATG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCGGCTCCGACACCTCGTaGCAGATCTCCAGCTTGAAT +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICGSDTS*QISSLN
Trigger: ATTCAAGCTGGAGATCTGCCACGAGGTGTCGGAGCC...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACCACTCGCTGGGCACTaGGTAGCGGACCATTACGTT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAPLAGH*VADHYV
Trigger: AACGTAATGGTCCGCTACCCAGTGCCCAGCGAGTGG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATTTTCACCCACTCGCTaGGCACTGGGTAGCGGACCA +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAFSPTR*ALGSGP
Trigger: TGGTCCGCTACCCAGTGCCCAGCGAGTGGGTGAAAA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGGAGCCAAGCTCAAGGTaGCAAAAGAAACAGTGTGGG +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILEPSSR*QKKQCG
Trigger: CCCACACTGTTTCTTTTGCCACCTTGAGCTTGGCTC...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAACTGGTGGGTGGCAATaGCATGGTCCAAGGTCGTCA +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRATGGWQ*HGPRSS
Trigger: TGACGACCTTGGACCATGTCATTGCCACCCACCAGT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTCCAGTTGCTGATGGCTaGGGCCAGGTCAGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEIPVADG*GQVRCG
Trigger: CCCACACCTGACCTGGCCTCAGCCATCAGCAACTGG...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATAGGGCATGGTCAATGTaGGGGCTGTTTCCTTGTGAG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADRAWSM*GLFPCE
Trigger: CTCACAAGGAAACAGCCCTCACATTGACCATGCCCT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATATGACCCAGTTGAGTTaGAAGGTACATCTGGGGCGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADMTQLS*KVHLGR
Trigger: CCGCCCCAGATGTACCTTTCAACTCAACTGGGTCAT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCCATGAGACGGTCCTaGACCGCATGGATGAAGCTC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASMRRS*TAWMKL
Trigger: GAGCTTCATCCATGCGGTTCAGGACCGTCTCATGGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCGCACTGGTAAATCCATaGGACGGTCCTGAACCGCAT +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICALVNP*DGPEPH
Trigger: ATGCGGTTCAGGACCGTCTCATGGATTTACCAGTGC...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGAGGTGGTGAGGTGCTaGTCCAGGGTGTGTCATCTT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAEVVRC*SRVCHL
Trigger: AAGATGACACACCCTGGAGCAGCACCTCACCACCTC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATGTGAGGTGGTGAGGTaGTGCTCCAGGGTGTGTCAT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRACEVVR*CSRVCH
Trigger: ATGACACACCCTGGAGCAGCACCTCACCACCTCACA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGGAAGCCCTGCCGCTTaGCTGTTCCTCGGTATTGAT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAGSPAA*LFLGID
Trigger: ATCAATACCGAGGAACAGGCAAGCGGCAGGGCTTCC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGAGCTCAAACCGGCATaGGTCCAAAGGGTTGAACAG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADELKPA*VQRVEQ
Trigger: CTGTTCAACCCTTTGGACGCATGCCGGTTTGAGCTC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGGCAGAACCAAAACTTaGCCCCCGGTTCACTTTGGC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAGRTKT*PPVHFG
Trigger: GCCAAAGTGAACCGGGGGGCAAGTTTTGGTTCTGCC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACACGGATCTCACGGCTaGTTTGGAGGCAGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAHGSHG*FGGRSR
Trigger: ACGACTTCTGCCTCCAAAGCAGCCGTGAGATCCGTG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCGAGTGTGAAAGGTCCTaGGAGCCTTCATCCACGACA +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICECERS*EPSSTT
Trigger: TGTCGTGGATGAAGGCTCCCAGGACCTTTCACACTC...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGAGTGTGAAAGGTCCTaGGAGCCTTCATCCACGACA +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADECERS*EPSSTT
Trigger: TGTCGTGGATGAAGGCTCCCAGGACCTTTCACACTC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGGCTCCGACACCTCGTaGCAGATCTCCAGCTTGAAT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAGSDTS*QISSLN
Trigger: ATTCAAGCTGGAGATCTGCCACGAGGTGTCGGAGCC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTGGAAACGGCACTCGTaGAGCTTGATCCACTTGGTG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADWKRHS*SLIHLV
Trigger: CACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp GCCACCTGGTGCCTTTTGAACTTTGACACTATTTTAACTACCAACCTTGGAATTAGGGCATGGTCAATGTaGGGGCTGTTTCCTTGTGAG +
Preference number: 4 (lower is better)
Translates to: ATWCLLNFDTILTTNLGIRAWSM*GLFPCE
Trigger: CTCACAAGGAAACAGCCCTCACATTGACCATGCCCT...AATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTGCCTGCCCACCAACTaGTGGCTTCCATTTCTACTT +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADCLPTN*WLPFLL
Trigger: AAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGGCA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGGGCTGGCTTTTGCCTaGATCATCAAAGCTGATGGC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAGLAFA*IIKADG
Trigger: GCCATCAGCTTTGATGATTCAGGCAAAAGCCAGCCC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATCAATTTGGAGTTGCTTaGGCTTTTCGATGGCGTCGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADQFGVA*AFRWRR
Trigger: CCGACGCCATCGAAAAGCTCAAGCAACTCCAAATTG...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACGCTGGCTGTCAGTTTaGTGTAGATTGGTCCCCAGT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRARWLSV*CRLVPS
Trigger: ACTGGGGACCAATCTACATCAAACTGACAGCCAGCG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGCACTGGTAAATCCATaGGACGGTCCTGAACCGCAT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAALVNP*DGPEPH
Trigger: ATGCGGTTCAGGACCGTCTCATGGATTTACCAGTGC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTCCAGAGTTACTCTCATaGCGGGCTCGGAGCCAGAGG +
Preference number: 4 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEIPELLS*RARSQR
Trigger: CCTCTGGCTCCGAGCCCGTCATGAGAGTAACTCTGG...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCTCAGAGGAGTCATCCTaGTCAGAGTGTGAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICSEESS*SECERS
Trigger: GGACCTTTCACACTCTGAGCAGGATGACTCCTCTGA...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGTAAGTTCATCAGTGTaGTCTTGGGACGGTCCCTCT +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADVSSSV*SWDGPS
Trigger: AGAGGGACCGTCCCAAGAGCACACTGATGAACTTAC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGAGGGCTGTACGTCCTaGAGAGTCTCATTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADEGCTS*RVSFRK
Trigger: TTTCCTGAATGAGACTCTGCAGGACGTACAGCCCTC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTGGGAGCGCCTTTCCTaGTCTTCAAAGAAAGCACTG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADWERLS*SSKKAL
Trigger: CAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCTGGTTGTCTCCCTTaGCCACTGTGCCAGAGAACT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASGCLP*PLCQRT
Trigger: AGTTCTCTGGCACAGTGGGCAAGGGAGACAACCAGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATCTAGAACGCTGTCCCTaGGGAAGTTTTTCACCCACT +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADLERCP*GSFSPT
Trigger: AGTGGGTGAAAAACTTCCGCAGGGACAGCGTTCTAG...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAATGGAGTTGAAGGCGTaGTCATACTTGGCCGTTCCC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAMELKA*SYLAVP
Trigger: GGGAACGGCCAAGTATGAGCACGCCTTCAACTCCAT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATACTTCTTCATCTTCCTaGAGGGAGGACGAGTTGTCG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADTSSSS*REDELS
Trigger: CGACAACTCGTCCTCCCTCCAGGAAGATGAAGAAGT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp AAGTTGAGGACCACTGTGGCAAGCAAACATTCTGCATATCAAAAGGTAATCTGCGAAACGGAACTGTTTTaGGAGCGCCTTTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: KLRTTVASKHSAYQKVICETELF*ERLSCS
Trigger: AGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTC...GCAGATTACCTTTTGATATGCAGAATGTTTGCTTGCCACAGTGGTCCTCAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGGGCCACAGCAGGTTTaGGCTGGTATTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADGPQQV*AGISSS
Trigger: AGAAGAAGAAATACCAGCCCAAACCTGCTGTGGCCC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAAGGCGTGCTCATACTTaGCCGTTCCCAGAGTTACTC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRARRAHT*PFPELL
Trigger: GAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGAGCCAAGCTCAAGGTaGCAAAAGAAACAGTGTGGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADEPSSR*QKKQCG
Trigger: CCCACACTGTTTCTTTTGCCACCTTGAGCTTGGCTC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATCATAGTTGGCAAATCTaGAAGGCACTTCCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADHSWQI*KALPGQ
Trigger: CTGACCGGGAAGTGCCTTCCAGATTTGCCAACTATG...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
3UTR CAA 72 bp AATGGGAGAGGAGGGATCTGGAAGAGCGTTTTGATCTaGAACAAATCCAGAACCAGAAGGGAGACATTTGGA +
Preference number: 4 (lower is better)
Translates to: NGRGGIWKSVLI*NKSRTRRETFG
Trigger: TCCAAATGTCTCCCTTCTGGTTCTGGATTTGTTCAAGATCAAAACGCTCTTCCAGATCCCTCCTCTCCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp ATAGCAAATGGGAGAGGAGGGATCTGGAAGAGCGTTTaGATCTTGAACAAATCCAGAACCAGAAGGGAGACA +
Preference number: 4 (lower is better)
Translates to: IANGRGGIWKSV*ILNKSRTRRET
Trigger: TGTCTCCCTTCTGGTTCTGGATTTGTTCAAGATCAAAACGCTCTTCCAGATCCCTCCTCTCCCATTTGCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATGAAATGTCCAACTTTTaGACTTTGGGTAAGTTCATC +
Preference number: 4 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHEMSNF*TLGKFI
Trigger: GATGAACTTACCCAAAGTTCAAAAGTTGGACATTTC...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGGCAGATCTCCAGCTTaGATTCCCGGAATGGCTTTT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAGRSPA*IPGMAF
Trigger: AAAAGCCATTCCGGGAATTCAAGCTGGAGATCTGCC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCTTCTCCTTGTAAGTaGCCCGGTCTATCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASSPCK*PGLSSS
Trigger: GCTTGAGGATAGACCGGGTCACTTACAAGGAGAAGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCCACACAATGGAGTTaGAGGCGTGCTCATACTTGG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASTQWS*RRAHTW
Trigger: CCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCAGAGGAGTCATCCTaGTCAGAGTGTGAAAGGTCC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASEESS*SECERS
Trigger: GGACCTTTCACACTCTGAGCAGGATGACTCCTCTGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTAATCTCTTTGGCTTTTaGCGGTGGTACTGGAAACGG +
Preference number: 4 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTNLFGF*RWYWKR
Trigger: CCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATT...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGAAACGGAACTGTTTTaGGAGCGCCTTTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAETELF*ERLSCS
Trigger: AGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTTTTGCCGGTGGTACTaGAAACGGAACTGTTTTGGG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADFCRWY*KRNCFG
Trigger: CCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp GCCACCTGGTGCCTTTTGAACTTTGACACTATTTTAACTACCAACCTTGGAATTGGGCCACAGCAGGTTTaGGCTGGTATTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: ATWCLLNFDTILTTNLGIGPQQV*AGISSS
Trigger: AGAAGAAGAAATACCAGCCCAAACCTGCTGTGGCCC...AATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp AGAGGTATCTCGAAAAGCAGGCCCAGAGAAATGGCTTaGGGAGTCTTTGAATCTTTTATAGAGGGAGCATCA +
Preference number: 4 (lower is better)
Translates to: RGISKSRPREMA*GVFESFIEGAS
Trigger: TGATGCTCCCTCTATAAAAGATTCAAAGACTCCCAAAGCCATTTCTCTGGGCCTGCTTTTCGAGATACCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACTGAATCATCAAAGCTaGTGGCATCCTGGTAGACGA +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRALNHQS*WHPGRR
Trigger: TCGTCTACCAGGATGCCATCAGCTTTGATGATTCAG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR TCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATATCCGTGTCAAGACATaGTGCTGTAAGATCTGGTTG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADIRVKT*CCKIWL
Trigger: CAACCAGATCTTACAGCATCATGTCTTGACACGGAT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAAATCTCTTTGGCTTTTaGCGGTGGTACTGGAAACGG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRANLFGF*RWYWKR
Trigger: CCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR GCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGCTTGTAGCTGTAGTGTaGAGAATAATTGACCCACTT +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILLVAVV*RIIDPL
Trigger: AAGTGGGTCAATTATTCTGCACACTACAGCTACAAG...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGTGTCATCTTCAAACTaGACCCAGTTGCTGATGGCT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAVSSSN*TQLLMA
Trigger: AGCCATCAGCAACTGGGTCCAGTTTGAAGATGACAC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGCCAACTTTTGAACTTTaGGTAAGTTCATCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILPTFEL*VSSSVC
Trigger: GCACACTGATGAACTTACCCAAAGTTCAAAAGTTGG...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATTTGGCTTTTGCCGGTaGTACTGGAAACGGAACTGT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAFGFCR*YWKRNC
Trigger: ACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp GCCACCTGGTGCCTTTTGAACTTTGACACTATTTTAACTACCAACCTTGGAATTCAGTTTGATGTAGATTaGTCCCCAGTGCCTAGAGGA +
Preference number: 4 (lower is better)
Translates to: ATWCLLNFDTILTTNLGIQFDVD*SPVPRG
Trigger: TCCTCTAGGCACTGGGGACCAATCTACATCAAACTG...AATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACAGTTTGATGTAGATTaGTCCCCAGTGCCTAGAGGA +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAQFDVD*SPVPRG
Trigger: TCCTCTAGGCACTGGGGACCAATCTACATCAAACTG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATACAGCAGGTTTGGGCTaGTATTTCTTCTTCTCCTTG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADTAGLG*YFFFSL
Trigger: CAAGGAGAAGAAGAAATACCAGCCCAAACCTGCTGT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAAAGAAACAGTGTGGGTaGCCAGAAGCTGAGTTCTTG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAKKQCG*PEAEFL
Trigger: CAAGAACTCAGCTTCTGGCCACCCACACTGTTTCTT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
3UTR CAA 72 bp CAACCTGAAGAAACAAACGCCCAGTGCTCTCTCTTTTaGTCTCTGGAAACTAAGAAGATAACAGGTCAGTCA +
Preference number: 4 (lower is better)
Translates to: QPEETNAQCSLF*SLETKKITGQS
Trigger: TGACTGACCTGTTATCTTCTTAGTTTCCAGAGACAAAAAGAGAGAGCACTGGGCGTTTGTTTCTTCAGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTCATCAATTTGGAGTTaGTTGAGCTTTTCGATGGCG +
Preference number: 4 (lower is better)
Translates to: CLVSLLPARDYFIKVRADSSIWS*LSFSMA
Trigger: CGCCATCGAAAAGCTCAAGCAACTCCAAATTGATGA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTTGGAAACGGCACTCGTaGAGCTTGATCCACTTGGTG +
Preference number: 4 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEIWKRHS*SLIHLV
Trigger: CACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCA...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTTCCACACAATGGAGTTaGAGGCGTGCTCATACTTGG +
Preference number: 4 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEISTQWS*RRAHTW
Trigger: CCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGA...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTTCAGGATCATCAATTTaGAGTTGCTTGAGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTSGSSI*SCLSFS
Trigger: CGAAAAGCTCAAGCAACTCCAAATTGATGATCCTGA...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR GCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACTTGTAGCTGTAGTGTaGAGAATAATTGACCCACTT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRALVAVV*RIIDPL
Trigger: AAGTGGGTCAATTATTCTGCACACTACAGCTACAAG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACCAACTTTTGAACTTTaGGTAAGTTCATCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAPTFEL*VSSSVC
Trigger: GCACACTGATGAACTTACCCAAAGTTCAAAAGTTGG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCAGGATCATCAATTTaGAGTTGCTTGAGCTTTTCG +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASGSSI*SCLSFS
Trigger: CGAAAAGCTCAAGCAACTCCAAATTGATGATCCTGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CCA 90 bp GCCACCTGGTGCCTTTTGAACTTTGACACTATTTTAACTACCAACCTTGGAATTCAACGTTTACATAGTTaGCAAATCTGGAAGGCACTT +
Preference number: 4 (lower is better)
Translates to: ATWCLLNFDTILTTNLGIQRLHS*QIWKAL
Trigger: AAGTGCCTTCCAGATTTGCCAACTATGTAAACGTTG...AATTCCAAGGTTGGTAGTTAAAATAGTGTCAAAGTTCAAAAGGCACCAGGTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACAACGTTTACATAGTTaGCAAATCTGGAAGGCACTT +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAQRLHS*QIWKAL
Trigger: AAGTGCCTTCCAGATTTGCCAACTATGTAAACGTTG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
3UTR CAA 72 bp AACTCCCTTTCAACTCTTAAAGTACAGGACTGGACTTaGGCAAATTGGCTAAGGCACACTAGAAGAAATAGA +
Preference number: 4 (lower is better)
Translates to: NSLSTLKVQDWT*ANWLRHTRRNR
Trigger: TCTATTTCTTCTAGTGTGCCTTAGCCAATTTGCCAAAGTCCAGTCCTGTACTTTAAGAGTTGAAAGGGAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR TCA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGAAATGTCCAACTTTTaGACTTTGGGTAAGTTCATC +
Preference number: 4 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAEMSNF*TLGKFI
Trigger: GATGAACTTACCCAAAGTTCAAAAGTTGGACATTTC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
3UTR CAA 72 bp TTGAAATGTTCTGCCTTTATGGCTTGGAATTGTAAGTaGACATATGCATGCTCTTCCCAAACTCCCTTTCAA +
Preference number: 4 (lower is better)
Translates to: LKCSAFMAWNCK*TYACSSQTPFQ
Trigger: TTGAAAGGGAGTTTGGGAAGAGCATGCATATGTCAACTTACAATTCCAAGCCATAAAGGCAGAACATTTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
3UTR CAA 72 bp TGTAAAGTTCTCTTCTGTTCCTATTTCTTTTTGCCTTaGAAGTTATGCAAAACAAAGCTAACCCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: CKVLFCSYFFLP*KLCKTKLTLLP
Trigger: AGGAAGAAGGGTTAGCTTTGTTTTGCATAACTTCAAAGGCAAAAAGAAATAGGAACAGAAGAGAACTTTACA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS TCA 90 bp TTCTTCTCGGGGATTCGCAGCATCATTGGCCACCCGTCCCTGGGCTaGGAGAGCGCTGAGGCAGGTGAGGGGGCGTCCAGTTCAACCGAG +
Preference number: 5 (lower is better)
Translates to: FFSGIRSIIGHPSLG*ESAEAGEGASSSTE
Trigger: CTCGGTTGAACTGGACGCCCCCTCACCTGCCTCAGCGCTCTCTCAGCCCAGGGACGGGTGGCCAATGATGCTGCGAATCCCCGAGAAGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp ACCCAGCTGGGGAAACGAGCTGTGGTCACCGGTGGAGCGGCAGGATaGCCATTCATGGCTGGACTGCCTGCCCACCAACTGATGGCTTCC +
Preference number: 5 (lower is better)
Translates to: TQLGKRAVVTGGAAG*PFMAGLPAHQLMAS
Trigger: GGAAGCCATCAGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACCGGTGACCACAGCTCGTTTCCCCAGCTGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp GGGTCGCGGTTAGAGGAGAAGCCGGGGGACATCCTCAGCCAGCTCTaGACCTCTACTTCCGCCCCGTTAATGCTCGCTGCGGTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: GSRLEEKPGDILSQL*TSTSAPLMLAAVLS
Trigger: ACTCAGGACCGCAGCGAGCATTAACGGGGCGGAAGTAGAGGTGCAGAGCTGGCTGAGGATGTCCCCCGGCTTCTCCTCTAACCGCGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp GTCTTCAAAAGTGACCCAGCTGGGGAAACGAGCTGTGGTCACCGGTaGAGCGGCAGGATGCCCATTCATGGCTGGACTGCCTGCCCACCA +
Preference number: 5 (lower is better)
Translates to: VFKSDPAGETSCGHR*SGRMPIHGWTACPP
Trigger: TGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACCGGTGACCACAGCTCGTTTCCCCAGCTGGGTCACTTTTGAAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp GGAGGACGAGTTGTCGGTAGAGTCGGTCCCGGAAGCCCTGCCGCTTaGCTGTTCCTCGGTATTGATGAGCTGCAGGTCTGTGTAGGAAGG +
Preference number: 5 (lower is better)
Translates to: GGRVVGRVGPGSPAA*LFLGIDELQVCVGR
Trigger: CCTTCCTACACAGACCTGCAGCTCATCAATACCGAGGAACAGGCAAGCGGCAGGGCTTCCGGGACCGACTCTACCGACAACTCGTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp CCTCAGCCAGCTCTGCACCTCTACTTCCGCCCCGTTAATGCTCGCTaGGGTCCTGAGTGTGAAGGGCAAGGTCTTCTCGGCAAATACGGT +
Preference number: 5 (lower is better)
Translates to: PQPALHLYFRPVNAR*GPECEGQGLLGKYG
Trigger: ACCGTATTTGCCGAGAAGACCTTGCCCTTCACACTCAGGACCGCAGCGAGCATTAACGGGGCGGAAGTAGAGGTGCAGAGCTGGCTGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp GCGAGGGCTGTACGTCCTGCAGAGTCTCATTCAGGAAAGGATTGGTaGCCCTCCAGGGTGGGGCCTCGATTACAGAAGGTGGCCGGTTTA +
Preference number: 5 (lower is better)
Translates to: ARAVRPAESHSGKDW*PSRVGPRLQKVAGL
Trigger: TAAACCGGCCACCTTCTGTAATCGAGGCCCCACCCTGGAGGGCCACCAATCCTTTCCTGAATGAGACTCTGCAGGACGTACAGCCCTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp CTGTTAAACACGTCCTCGTCCACGCACCCGTGGAAACGGCACTCGTaGAGCTTGATCCACTTGGTGGTGGTGGTGGGCATGATGTCCTGC +
Preference number: 5 (lower is better)
Translates to: LLNTSSSTHPWKRHS*SLIHLVVVVGMMSC
Trigger: GCAGGACATCATGCCCACCACCACCACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGAGGACGTGTTTAACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp ACGAGCTGTGGTCACCGGTGGAGCGGCAGGATGCCCATTCATGGCTaGACTGCCTGCCCACCAACTGATGGCTTCCATTTCTACTTCTTC +
Preference number: 5 (lower is better)
Translates to: TSCGHRWSGRMPIHG*TACPPTDGFHFYFF
Trigger: GAAGAAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACCGGTGACCACAGCTCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 90 bp GAGCGGCAGGATGCCCATTCATGGCTGGACTGCCTGCCCACCAACTaGTGGCTTCCATTTCTACTTCTTCATCTTCCTGGAGGGAGGACG +
Preference number: 5 (lower is better)
Translates to: ERQDAHSWLDCLPTN*WLPFLLLHLPGGRT
Trigger: CGTCCTCCCTCCAGGAAGATGAAGAAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp GAGCAACGCTGGGACTGCTGGTGTCCTCAGAATGCGTGGTCCAACTaGTCTCCGACGTCAAAGGGCATCTTCTCAGAGAGTCGAAGGAAG +
Preference number: 5 (lower is better)
Translates to: EQRWDCWCPQNAWSN*SPTSKGIFSESRRK
Trigger: CTTCCTTCGACTCTCTGAGAAGATGCCCTTTGACGTCGGAGAGCAGTTGGACCACGCATTCTGAGGACACCAGCAGTCCCAGCGTTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp GGTCACCGGTGGAGCGGCAGGATGCCCATTCATGGCTGGACTGCCTaGCCACCAACTGATGGCTTCCATTTCTACTTCTTCATCTTCCTG +
Preference number: 5 (lower is better)
Translates to: GHRWSGRMPIHGWTA*PPTDGFHFYFFIFL
Trigger: CAGGAAGATGAAGAAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACCGGTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp TCCTGCTCAGAGTGTGAAAGGTCCTGGGAGCCTTCATCCACGACATaGTTCTCCCCAGAGGAGCTCTCAGACCGCTCTGAGGAAGATGAC +
Preference number: 5 (lower is better)
Translates to: SCSECERSWEPSSTT*FSPEELSDRSEEDD
Trigger: GTCATCTTCCTCAGAGCGGTCTGAGAGCTCCTCTGGGGAGAACCATGTCGTGGATGAAGGCTCCCAGGACCTTTCACACTCTGAGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
ENSMUST00000170077.2
CDS CCA 90 bp CCTGCCCACCAACTGATGGCTTCCATTTCTACTTCTTCATCTTCCTaGAGGGAGGACGAGTTGTCGGTAGAGTCGGTCCCGGAAGCCCTG +
Preference number: 5 (lower is better)
Translates to: PAHQLMASISTSSSS*REDELSVESVPEAL
Trigger: CAGGGCTTCCGGGACCGACTCTACCGACAACTCGTCCTCCCTCCAGGAAGATGAAGAAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp AGAATAACCCGGGAACTGTTAAACACGTCCTCGTCCACGCACCCGTaGAAACGGCACTCGTGGAGCTTGATCCACTTGGTGGTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: RITRELLNTSSSTHP*KRHSWSLIHLVVVV
Trigger: CACCACCACCACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGAGGACGTGTTTAACAGTTCCCGGGTTATTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp TTTCCCCTAGAACGCTGTCCCTGCGGAAGTTTTTCACCCACTCGCTaGGCACTGGGTAGCGGACCATTACGTTCTCACAGGGAACCTGAG +
Preference number: 5 (lower is better)
Translates to: FPLERCPCGSFSPTR*ALGSGPLRSHREPE
Trigger: CTCAGGTTCCCTGTGAGAACGTAATGGTCCGCTACCCAGTGCCCAGCGAGTGGGTGAAAAACTTCCGCAGGGACAGCGTTCTAGGGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp TCAAAGAAAGCACTGAACGGGTTGATAGGCGAGGGCTGTACGTCCTaGAGAGTCTCATTCAGGAAAGGATTGGTGGCCCTCCAGGGTGGG +
Preference number: 5 (lower is better)
Translates to: SKKALNGLIGEGCTS*RVSFRKGLVALQGG
Trigger: CCCACCCTGGAGGGCCACCAATCCTTTCCTGAATGAGACTCTGCAGGACGTACAGCCCTCGCCTATCAACCCGTTCAGTGCTTTCTTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp CTTCCTGACGTCAGGCTTGTCCTCCACAGACACGGATCTCACGGCTaGTTTGGAGGCAGAAGTCGTGGGCATGCTGAACTCAACGTTTAC +
Preference number: 5 (lower is better)
Translates to: LPDVRLVLHRHGSHG*FGGRSRGHAELNVY
Trigger: GTAAACGTTGAGTTCAGCATGCCCACGACTTCTGCCTCCAAAGCAGCCGTGAGATCCGTGTCTGTGGAGGACAAGCCTGACGTCAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp CACCTCAGCGGGAAGCCCTCTCCAGGCTACCTTGTAGCTGTAGTGTaGAGAATAATTGACCCACTTCCTGACGTCAGGCTTGTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: HLSGKPSPGYLVAVV*RIIDPLPDVRLVLH
Trigger: GTGGAGGACAAGCCTGACGTCAGGAAGTGGGTCAATTATTCTGCACACTACAGCTACAAGGTAGCCTGGAGAGGGCTTCCCGCTGAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS CCA 90 bp TGTAGGAAGGAGCAACGCTGGGACTGCTGGTGTCCTCAGAATGCGTaGTCCAACTGCTCTCCGACGTCAAAGGGCATCTTCTCAGAGAGT +
Preference number: 5 (lower is better)
Translates to: CRKEQRWDCWCPQNA*SNCSPTSKGIFSES
Trigger: ACTCTCTGAGAAGATGCCCTTTGACGTCGGAGAGCAGTTGGACCACGCATTCTGAGGACACCAGCAGTCCCAGCGTTGCTCCTTCCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTAAGGCGTGCTCATACTaGGCCGTTCCCAGAGTTACT +
Preference number: 5 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTIKACSY*AVPRVT
Trigger: AGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTT...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS GCA 90 bp TTGTCTGGCAGCCGGTTTATCCTCCACACAATGGAGTTGAAGGCGTaGTCATACTTGGCCGTTCCCAGAGTTACTCTCATGACGGGCTCG +
Preference number: 5 (lower is better)
Translates to: LSGSRFILHTMELKA*SYLAVPRVTLMTGS
Trigger: CGAGCCCGTCATGAGAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGATAAACCGGCTGCCAGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 90 bp GGGCCACAGCAGGTTTGGGCTGGTATTTCTTCTTCTCCTTGTAAGTaGCCCGGTCTATCCTCAAGCTGTGGATCCTCCCGTTCTCGTCAT +
Preference number: 5 (lower is better)
Translates to: GPQQVWAGISSSPCK*PGLSSSCGSSRSRH
Trigger: ATGACGAGAACGGGAGGATCCACAGCTTGAGGATAGACCGGGTCACTTACAAGGAGAAGAAGAAATACCAGCCCAAACCTGCTGTGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 90 bp GCGAGCCCAGAGAGGAAACTCAGTATGTGGATCCGTGTCAAGACATaGTGCTGTAAGATCTGGTTGTCTCCCTTGCCCACTGTGCCAGAG +
Preference number: 5 (lower is better)
Translates to: ASPERKLSMWIRVKT*CCKIWLSPLPTVPE
Trigger: CTCTGGCACAGTGGGCAAGGGAGACAACCAGATCTTACAGCATCATGTCTTGACACGGATCCACATACTGAGTTTCCTCTCTGGGCTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp TTGCCGGTGGTACTGGAAACGGAACTGTTTTGGGAGCGCCTTTCCTaGTCTTCAAAGAAAGCACTGAACGGGTTGATAGGCGAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: LPVVLETELFWERLS*SSKKALNGLIGEGC
Trigger: ACAGCCCTCGCCTATCAACCCGTTCAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 90 bp GTCGTAGTTGGTGGTGCCCAGTTTAATTACCTGTTCCCGTTCCGCTaGGTGGGCCACAGCAGGTTTGGGCTGGTATTTCTTCTTCTCCTT +
Preference number: 5 (lower is better)
Translates to: VVVGGAQFNYLFPFR*VGHSRFGLVFLLLL
Trigger: AAGGAGAAGAAGAAATACCAGCCCAAACCTGCTGTGGCCCACGCAGCGGAACGGGAACAGGTAATTAAACTGGGCACCACCAACTACGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGTCATTCAGGAAAGGATaGGTGGCCCTCCAGGGTGGG +
Preference number: 5 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELSFRKG*VALQGG
Trigger: CCCACCCTGGAGGGCCACCAATCCTTTCCTGAATGA...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTGGGTGGGGCTGGCTTTaGCCTGAATCATCAAAGCTG +
Preference number: 5 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEIGWGWL*PESSKL
Trigger: CAGCTTTGATGATTCAGGCAAAAGCCAGCCCCACCC...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATTGGAGCTTGATCCACTaGGTGGTGGTGGTGGGCATG +
Preference number: 5 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHWSLIH*VVVVGM
Trigger: CATGCCCACCACCACCACCAAGTGGATCAAGCTCCA...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS TCA 90 bp ACACGGATCTCACGGCTGCTTTGGAGGCAGAAGTCGTGGGCATGCTaGACTCAACGTTTACATAGTTGGCAAATCTGGAAGGCACTTCCC +
Preference number: 5 (lower is better)
Translates to: TRISRLLWRQKSWAC*TQRLHSWQIWKALP
Trigger: GGGAAGTGCCTTCCAGATTTGCCAACTATGTAAACGTTGAGTTCAGCATGCCCACGACTTCTGCCTCCAAAGCAGCCGTGAGATCCGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp TTGGCAAATCTGGAAGGCACTTCCCGGTCAGAGCCAAGCTCAAGGTaGCAAAAGAAACAGTGTGGGTGGCCAGAAGCTGAGTTCTTGTCT +
Preference number: 5 (lower is better)
Translates to: LANLEGTSRSEPSSR*QKKQCGWPEAEFLS
Trigger: AGACAAGAACTCAGCTTCTGGCCACCCACACTGTTTCTTTTGCCACCTTGAGCTTGGCTCTGACCGGGAAGTGCCTTCCAGATTTGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp AAATCCAACAGGCTGATGCTGAGAGCTAAGGGTTCACCTGTGTCCACAGAACTGGCCTGTTCCTCGGTATaGATGAGCTGCAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: KSNRLMLRAKGSPVSTELACSSV*MSCRSV
Trigger: CACAGACCTGCAGCTCATCAATACCGAGGAACAGGC...CAGTTCTGTGGACACAGGTGAACCCTTAGCTCTCAGCATCAGCCTGTTGGATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp ACGAATGCTGGCGGAGGGGACGGGGGATTCATGACACACAAGGCACCAACCATTAATCAGAGAATCTCTTaGGCTTTTGCCGGTGGTACT +
Preference number: 5 (lower is better)
Translates to: TNAGGGDGGFMTHKAPTINQRIS*AFAGGT
Trigger: AGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATT...AATGGTTGGTGCCTTGTGTGTCATGAATCCCCCGTCCCCTCCGCCAGCATTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TTACAGAAATGGAGGGTGAAGAAGGATGCTCCTCCATTCCAAACACCAATCCTGGATCTCACGGCTGCTTaGGAGGCAGAAGTCGTGGGC +
Preference number: 5 (lower is better)
Translates to: LQKWRVKKDAPPFQTPILDLTAA*EAEVVG
Trigger: GCCCACGACTTCTGCCTCCAAAGCAGCCGTGAGATC...CAGGATTGGTGTTTGGAATGGAGGAGCATCCTTCTTCACCCTCCATTTCTGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTAATGACCCAGTTGAGTaGAAAGGTACATCTGGGGCG +
Preference number: 5 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEINDPVE*KGTSGA
Trigger: CGCCCCAGATGTACCTTTCAACTCAACTGGGTCATT...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATATGGCAGATCTCCAGCTaGAATTCCCGGAATGGCTTT +
Preference number: 5 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIWQISS*NSRNGF
Trigger: AAAGCCATTCCGGGAATTCAAGCTGGAGATCTGCCA...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATACATGCGTCCAAAGGGTaGAACAGAATAACCCGGGAA +
Preference number: 5 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIHASKG*NRITRE
Trigger: TTCCCGGGTTATTCTGTTCAACCCTTTGGACGCATG...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp ACCTTGTGCACCCTAGGCAGGCTCTCTATCACTGAGCAGACCTCTTGTCTGATAGTACCCCACATTCCTTaGGGTTTTCCAAGTCCTCTC +
Preference number: 5 (lower is better)
Translates to: TLCTLGRLSITEQTSCLIVPHIP*GFPSPL
Trigger: GAGAGGACTTGGAAAACCCAAAGGAATGTGGGGTAC...TATCAGACAAGAGGTCTGCTCAGTGATAGAGAGCCTGCCTAGGGTGCACAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS CCA 90 bp GAATCTCTTTGGCTTTTGCCGGTGGTACTGGAAACGGAACTGTTTTaGGAGCGCCTTTCCTGCTCTTCAAAGAAAGCACTGAACGGGTTG +
Preference number: 5 (lower is better)
Translates to: ESLWLLPVVLETELF*ERLSCSSKKALNGL
Trigger: CAACCCGTTCAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp CATCCTGGTAGACGACAATCAGAGAATCTCTTTGGCTTTTGCCGGTaGTACTGGAAACGGAACTGTTTTGGGAGCGCCTTTCCTGCTCTT +
Preference number: 5 (lower is better)
Translates to: HPGRRQSENLFGFCR*YWKRNCFGSAFPAL
Trigger: AAGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATTGTCGTCTACCAGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp ATTGAGGTATTCACACCCCAGTATCCACTTGGGAGACTGCCCTCTGACCTTCATCTCCACACAATGGAGTaGAAGGCGTGCTCATACTTG +
Preference number: 5 (lower is better)
Translates to: IEVFTPQYPLGRLPSDLHLHTME*KACSYL
Trigger: CAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAG...ATGAAGGTCAGAGGGCAGTCTCCCAAGTGGATACTGGGGTGTGAATACCTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGATCTCACGGCTGCTTaGGAGGCAGAAGTCGTGGGC +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADDLTAA*EAEVVG
Trigger: GCCCACGACTTCTGCCTCCAAAGCAGCCGTGAGATC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS GCA 90 bp CTTCTCGGCAAATACGGTCCTAAACCTCATGAGCTCAAACCGGCATaGGTCCAAAGGGTTGAACAGAATAACCCGGGAACTGTTAAACAC +
Preference number: 5 (lower is better)
Translates to: LLGKYGPKPHELKPA*VQRVEQNNPGTVKH
Trigger: GTGTTTAACAGTTCCCGGGTTATTCTGTTCAACCCTTTGGACGCATGCCGGTTTGAGCTCATGAGGTTTAGGACCGTATTTGCCGAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 90 bp GGTAGACGACAATCAGAGAATCTCTTTGGCTTTTGCCGGTGGTACTaGAAACGGAACTGTTTTGGGAGCGCCTTTCCTGCTCTTCAAAGA +
Preference number: 5 (lower is better)
Translates to: GRRQSENLFGFCRWY*KRNCFGSAFPALQR
Trigger: TCTTTGAAGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATTGTCGTCTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTCATTCAGGAAAGGATaGGTGGCCCTCCAGGGTGGG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADSFRKG*VALQGG
Trigger: CCCACCCTGGAGGGCCACCAATCCTTTCCTGAATGA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGAAAGCACTGAACGGGTaGATAGGCGAGGGCTGTACG +
Preference number: 5 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVKALNG*IGEGCT
Trigger: CGTACAGCCCTCGCCTATCAACCCGTTCAGTGCTTT...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGTTGATGAGGATGTCATaGAGGCCCAAGCGGCACTCG +
Preference number: 5 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVLMRMS*RPKRHS
Trigger: CGAGTGCCGCTTGGGCCTCAATGACATCCTCATCAA...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp GAATGGTCAGGGCATTCACTGGATTGTGGGCTCAGCCACCGACACACTGAAATTACGATTTCGTTCCCTTaGATGAGGATGTCATTGAGG +
Preference number: 5 (lower is better)
Translates to: EWSGHSLDCGLSHRHTEITISFP*MRMSLR
Trigger: CCTCAATGACATCCTCATCAAAGGGAACGAAATCGT...AATTTCAGTGTGTCGGTGGCTGAGCCCACAATCCAGTGAATGCCCTGACCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS TCA 90 bp TCGATTACAGAAGGTGGCCGGTTTAAGGAGGAAATGTCCAACTTTTaGACTTTGGGTAAGTTCATCAGTGTGCTCTTGGGACGGTCCCTC +
Preference number: 5 (lower is better)
Translates to: SITEGGRFKEEMSNF*TLGKFISVLLGRSL
Trigger: GAGGGACCGTCCCAAGAGCACACTGATGAACTTACCCAAAGTTCAAAAGTTGGACATTTCCTCCTTAAACCGGCCACCTTCTGTAATCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATCAAACTGGACCCAGTaGCTGATGGCTGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRASNWTQ*LMAEAR
Trigger: CCTGGCCTCAGCCATCAGCAACTGGGTCCAGTTTGA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGGGTGGGGCTGGCTTTaGCCTGAATCATCAAAGCTG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADGWGWL*PESSKL
Trigger: CAGCTTTGATGATTCAGGCAAAAGCCAGCCCCACCC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp CACAGGGCTAAGCCAGAGATGACCTTCACCCTTTCAACCAACTCTTCAGCCCACATCAGGATCATCAATTaGGAGTTGCTTGAGCTTTTC +
Preference number: 5 (lower is better)
Translates to: HRAKPEMTFTLSTNSSAHIRIIN*ELLELF
Trigger: GAAAAGCTCAAGCAACTCCAAATTGATGATCCTGAT...GTGGGCTGAAGAGTTGGTTGAAAGGGTGAAGGTCATCTCTGGCTTAGCCCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTTGATGAGGATGTCATaGAGGCCCAAGCGGCACTCG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADLMRMS*RPKRHS
Trigger: CGAGTGCCGCTTGGGCCTCAATGACATCCTCATCAA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATGGAGCTTGATCCACTaGGTGGTGGTGGTGGGCATG +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAWSLIH*VVVVGM
Trigger: CATGCCCACCACCACCACCAAGTGGATCAAGCTCCA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp AAGGCCTTTAACCCAAGTGTGGAAAAACACAGACTTCTTCTCGACAACTCTACTTTCCTGACGTCAGGCTaGTCCTCCACAGACACGGAT +
Preference number: 5 (lower is better)
Translates to: KAFNPSVEKHRLLLDNSTFLTSG*SSTDTD
Trigger: ATCCGTGTCTGTGGAGGACAAGCCTGACGTCAGGAA...AGTAGAGTTGTCGAGAAGAAGTCTGTGTTTTTCCACACTTGGGTTAAAGGCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGCCTGTTCCTCGGTATaGATGAGCTGCAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAACSSV*MSCRSV
Trigger: CACAGACCTGCAGCTCATCAATACCGAGGAACAGGC...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAAAAGCACTGAACGGGTaGATAGGCGAGGGCTGTACG +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAKALNG*IGEGCT
Trigger: CGTACAGCCCTCGCCTATCAACCCGTTCAGTGCTTT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGGAATCTCTTTGGCTTTaGCCGGTGGTACTGGAAACG +
Preference number: 5 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVESLWL*PVVLET
Trigger: CGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTC...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTGCTGTAAGATCTGGTaGTCTCCCTTGCCCACTGTG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADCCKIW*SPLPTV
Trigger: CACAGTGGGCAAGGGAGACAACCAGATCTTACAGCA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATTCCTGACGTCAGGCTaGTCCTCCACAGACACGGAT +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAFLTSG*SSTDTD
Trigger: ATCCGTGTCTGTGGAGGACAAGCCTGACGTCAGGAA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp ACAAATGACAGGAAATACAAGCCTCAGAATGGTCAGGGCATTCACTGGATTGTGTTCATCAGTGTGCTCTaGGGACGGTCCCTCTTAAAT +
Preference number: 5 (lower is better)
Translates to: TNDRKYKPQNGQGIHWIVFISVL*GRSLLN
Trigger: ATTTAAGAGGGACCGTCCCAAGAGCACACTGATGAA...CACAATCCAGTGAATGCCCTGACCATTCTGAGGCTTGTATTTCCTGTCATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATGAATCTCTTTGGCTTTaGCCGGTGGTACTGGAAACG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADESLWL*PVVLET
Trigger: CGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTC...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATTGGCAGATCTCCAGCTaGAATTCCCGGAATGGCTTT +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADWQISS*NSRNGF
Trigger: AAAGCCATTCCGGGAATTCAAGCTGGAGATCTGCCA...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAAAGGCGTGCTCATACTaGGCCGTTCCCAGAGTTACT +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAKACSY*AVPRVT
Trigger: AGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATCTCCACACAATGGAGTaGAAGGCGTGCTCATACTTG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADLHTME*KACSYL
Trigger: CAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAG...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTTCAAACTGGACCCAGTaGCTGATGGCTGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEISNWTQ*LMAEAR
Trigger: CCTGGCCTCAGCCATCAGCAACTGGGTCCAGTTTGA...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCACATGCGTCCAAAGGGTaGAACAGAATAACCCGGGAA +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAHASKG*NRITRE
Trigger: TTCCCGGGTTATTCTGTTCAACCCTTTGGACGCATG...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCATTCATCAGTGTGCTCTaGGGACGGTCCCTCTTAAAT +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRAFISVL*GRSLLN
Trigger: ATTTAAGAGGGACCGTCCCAAGAGCACACTGATGAA...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATACGATTTCGTTCCCTTaGATGAGGATGTCATTGAGG +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADTISFP*MRMSLR
Trigger: CCTCAATGACATCCTCATCAAAGGGAACGAAATCGT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp TTTTGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAAATCAGAGAATCTCTTaGGCTTTTGCCGGTGGTACT +
Preference number: 5 (lower is better)
Translates to: FCLVSLLPARDYFIKVRANQRIS*AFAGGT
Trigger: AGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATT...TGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS-3UTR CAA 90 bp CTAAATTTCAGGGTCCAGTGCTGGATAGTTTCCAATTCTTTTCATACTGAAATTTGCTGTAAGATCTGGTaGTCTCCCTTGCCCACTGTG +
Preference number: 5 (lower is better)
Translates to: LNFRVQCWIVSNSFHTEICCKIW*SPLPTV
Trigger: CACAGTGGGCAAGGGAGACAACCAGATCTTACAGCA...AATTTCAGTATGAAAAGAATTGGAAACTATCCAGCACTGGACCCTGAAATTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15
CDS-3UTR CAA 90 bp TGCCTAGTTTCTCTCTTACCCGCGAGGGATTATTTCATTAAAGTCAGAGCAGATATCAGGATCATCAATTaGGAGTTGCTTGAGCTTTTC +
Preference number: 5 (lower is better)
Translates to: CLVSLLPARDYFIKVRADIRIIN*ELLELF
Trigger: GAAAAGCTCAAGCAACTCCAAATTGATGATCCTGAT...ATCTGCTCTGACTTTAATGAAATAATCCCTCGCGGGTAAGAGAGAAACTAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS CCA 72 bp AGTGACCCAGCTGGGGAAACGAGCTGTGGTCACCGGTaGAGCGGCAGGATGCCCATTCATGGCTGGACTGCC +
Preference number: 6 (lower is better)
Translates to: SDPAGETSCGHR*SGRMPIHGWTA
Trigger: GGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACCGGTGACCACAGCTCGTTTCCCCAGCTGGGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp ACGTCCTCGTCCACGCACCCGTGGAAACGGCACTCGTaGAGCTTGATCCACTTGGTGGTGGTGGTGGGCATG +
Preference number: 6 (lower is better)
Translates to: TSSSTHPWKRHS*SLIHLVVVVGM
Trigger: CATGCCCACCACCACCACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGAGGACGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp AACACGTCCTCGTCCACGCACCCGTGGAAACGGCACTCGTGGAGCTaGATCCACTTGGTGGTGGTGGTGGGCATGATGTCCTGCCGGGAA +
Preference number: 6 (lower is better)
Translates to: NTSSSTHPWKRHSWS*IHLVVVVGMMSCRE
Trigger: TTCCCGGCAGGACATCATGCCCACCACCACCACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGAGGACGTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GGTCACCGGTGGAGCGGCAGGATGCCCATTCATGGCTaGACTGCCTGCCCACCAACTGATGGCTTCCATTTC +
Preference number: 6 (lower is better)
Translates to: GHRWSGRMPIHG*TACPPTDGFHF
Trigger: GAAATGGAAGCCATCAGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCACCGGTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp CACCCGTGGAAACGGCACTCGTGGAGCTTGATCCACTaGGTGGTGGTGGTGGGCATGATGTCCTGCCGGGAA +
Preference number: 6 (lower is better)
Translates to: HPWKRHSWSLIH*VVVVGMMSCRE
Trigger: TTCCCGGCAGGACATCATGCCCACCACCACCACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp TCGTCCACGCACCCGTGGAAACGGCACTCGTGGAGCTTGATCCACTaGGTGGTGGTGGTGGGCATGATGTCCTGCCGGGAAACGATTTCG +
Preference number: 6 (lower is better)
Translates to: SSTHPWKRHSWSLIH*VVVVGMMSCRETIS
Trigger: CGAAATCGTTTCCCGGCAGGACATCATGCCCACCACCACCACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp GCGGCGAAGGGCAGCCGACTTCATTGTCTTCAAAAGTaGCCCAGCTGGGGAAACGAGCTGTGGTCACCGGTG +
Preference number: 6 (lower is better)
Translates to: AAKGSRLHCLQK*PSWGNELWSPV
Trigger: CACCGGTGACCACAGCTCGTTTCCCCAGCTGGGTCACTTTTGAAGACAATGAAGTCGGCTGCCCTTCGCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp CGTGCTCATACTTGGCCGTTCCCAGAGTTACTCTCATaGCGGGCTCGGAGCCAGAGGCACCGGCAGAACCAA +
Preference number: 6 (lower is better)
Translates to: RAHTWPFPELLS*RARSQRHRQNQ
Trigger: TTGGTTCTGCCGGTGCCTCTGGCTCCGAGCCCGTCATGAGAGTAACTCTGGGAACGGCCAAGTATGAGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp GTTGTCGGTAGAGTCGGTCCCGGAAGCCCTGCCGCTTaGCTGTTCCTCGGTATTGATGAGCTGCAGGTCTGT +
Preference number: 6 (lower is better)
Translates to: VVGRVGPGSPAA*LFLGIDELQVC
Trigger: ACAGACCTGCAGCTCATCAATACCGAGGAACAGGCAAGCGGCAGGGCTTCCGGGACCGACTCTACCGACAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GTTGAAAGGTACATCTGGGGCGGCAGTTGCGGCAGATaGGGTGTTTGGCTTCTTTGGAGAGGGGACTGGCGG +
Preference number: 6 (lower is better)
Translates to: VERYIWGGSCGR*GVWLLWRGDWR
Trigger: CCGCCAGTCCCCTCTCCAAAGAAGCCAAACACCCCATCTGCCGCAACTGCCGCCCCAGATGTACCTTTCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp ACCGAGGCCGTGGGGTCGTCATCGGGCAGGGCTGTATaGCCGACGGGATCAGGATCATCAATTTGGAGTTGC +
Preference number: 6 (lower is better)
Translates to: TEAVGSSSGRAV*PTGSGSSIWSC
Trigger: GCAACTCCAAATTGATGATCCTGATCCCGTCGGCAATACAGCCCTGCCCGATGACGACCCCACGGCCTCGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp CCTCAAGCTGTGGATCCTCCCGTTCTCGTCATAGTTTaGGAGCCGGGGCTCCGACACCTCGTGGCAGATCTC +
Preference number: 6 (lower is better)
Translates to: PQAVDPPVLVIV*EPGLRHLVADL
Trigger: GAGATCTGCCACGAGGTGTCGGAGCCCCGGCTCCAAAACTATGACGAGAACGGGAGGATCCACAGCTTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp GTGGTGGTGGGCATGATGTCCTGCCGGGAAACGATTTCGTTCCCTTaGATGAGGATGTCATTGAGGCCCAAGCGGCACTCGGCGAGCCCA +
Preference number: 6 (lower is better)
Translates to: VVVGMMSCRETISFP*MRMSLRPKRHSASP
Trigger: TGGGCTCGCCGAGTGCCGCTTGGGCCTCAATGACATCCTCATCAAAGGGAACGAAATCGTTTCCCGGCAGGACATCATGCCCACCACCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp CCGGTCTATCCTCAAGCTGTGGATCCTCCCGTTCTCGTCATAGTTTaGGAGCCGGGGCTCCGACACCTCGTGGCAGATCTCCAGCTTGAA +
Preference number: 6 (lower is better)
Translates to: PVYPQAVDPPVLVIV*EPGLRHLVADLQLE
Trigger: TTCAAGCTGGAGATCTGCCACGAGGTGTCGGAGCCCCGGCTCCAAAACTATGACGAGAACGGGAGGATCCACAGCTTGAGGATAGACCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp GCCGGGGCTCCGACACCTCGTGGCAGATCTCCAGCTTaGATTCCCGGAATGGCTTTTCTAAGCCTTGCTCGT +
Preference number: 6 (lower is better)
Translates to: AGAPTPRGRSPA*IPGMAFLSLAR
Trigger: ACGAGCAAGGCTTAGAAAAGCCATTCCGGGAATTCAAGCTGGAGATCTGCCACGAGGTGTCGGAGCCCCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp GTCAGGCTTGTCCTCCACAGACACGGATCTCACGGCTaGTTTGGAGGCAGAAGTCGTGGGCATGCTGAACTC +
Preference number: 6 (lower is better)
Translates to: VRLVLHRHGSHG*FGGRSRGHAEL
Trigger: GAGTTCAGCATGCCCACGACTTCTGCCTCCAAAGCAGCCGTGAGATCCGTGTCTGTGGAGGACAAGCCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GGTGAGGTGCTGCTCCAGGGTGTGTCATCTTCAAACTaGACCCAGTTGCTGATGGCTGAGGCCAGGTCAGGT +
Preference number: 6 (lower is better)
Translates to: GEVLLQGVSSSN*TQLLMAEARSG
Trigger: ACCTGACCTGGCCTCAGCCATCAGCAACTGGGTCCAGTTTGAAGATGACACACCCTGGAGCAGCACCTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
ENSMUST00000170077.2
CDS CCA 72 bp GAGCAACGCTGGGACTGCTGGTGTCCTCAGAATGCGTaGTCCAACTGCTCTCCGACGTCAAAGGGCATCTTC +
Preference number: 6 (lower is better)
Translates to: EQRWDCWCPQNA*SNCSPTSKGIF
Trigger: GAAGATGCCCTTTGACGTCGGAGAGCAGTTGGACCACGCATTCTGAGGACACCAGCAGTCCCAGCGTTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp CGGGAACTGTTAAACACGTCCTCGTCCACGCACCCGTaGAAACGGCACTCGTGGAGCTTGATCCACTTGGTG +
Preference number: 6 (lower is better)
Translates to: RELLNTSSSTHP*KRHSWSLIHLV
Trigger: CACCAAGTGGATCAAGCTCCACGAGTGCCGTTTCCACGGGTGCGTGGACGAGGACGTGTTTAACAGTTCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GTCCCTGCGGAAGTTTTTCACCCACTCGCTGGGCACTaGGTAGCGGACCATTACGTTCTCACAGGGAACCTG +
Preference number: 6 (lower is better)
Translates to: VPAEVFHPLAGH*VADHYVLTGNL
Trigger: CAGGTTCCCTGTGAGAACGTAATGGTCCGCTACCCAGTGCCCAGCGAGTGGGTGAAAAACTTCCGCAGGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GAACGCTGTCCCTGCGGAAGTTTTTCACCCACTCGCTaGGCACTGGGTAGCGGACCATTACGTTCTCACAGG +
Preference number: 6 (lower is better)
Translates to: ERCPCGSFSPTR*ALGSGPLRSHR
Trigger: CCTGTGAGAACGTAATGGTCCGCTACCCAGTGCCCAGCGAGTGGGTGAAAAACTTCCGCAGGGACAGCGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp AGCCGGGGCTCCGACACCTCGTGGCAGATCTCCAGCTaGAATTCCCGGAATGGCTTTTCTAAGCCTTGCTCG +
Preference number: 6 (lower is better)
Translates to: SRGSDTSWQISS*NSRNGFSKPCS
Trigger: CGAGCAAGGCTTAGAAAAGCCATTCCGGGAATTCAAGCTGGAGATCTGCCACGAGGTGTCGGAGCCCCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp CGGGAAACGATTTCGTTCCCTTTGATGAGGATGTCATaGAGGCCCAAGCGGCACTCGGCGAGCCCAGAGAGG +
Preference number: 6 (lower is better)
Translates to: RETISFPLMRMS*RPKRHSASPER
Trigger: CCTCTCTGGGCTCGCCGAGTGCCGCTTGGGCCTCAATGACATCCTCATCAAAGGGAACGAAATCGTTTCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp ATGGCTTCCATTTCTACTTCTTCATCTTCCTGGAGGGAGGACGAGTaGTCGGTAGAGTCGGTCCCGGAAGCCCTGCCGCTTGCCTGTTCC +
Preference number: 6 (lower is better)
Translates to: MASISTSSSSWREDE*SVESVPEALPLACS
Trigger: GGAACAGGCAAGCGGCAGGGCTTCCGGGACCGACTCTACCGACAACTCGTCCTCCCTCCAGGAAGATGAAGAAGTAGAAATGGAAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp GCACTGAACGGGTTGATAGGCGAGGGCTGTACGTCCTaGAGAGTCTCATTCAGGAAAGGATTGGTGGCCCTC +
Preference number: 6 (lower is better)
Translates to: ALNGLIGEGCTS*RVSFRKGLVAL
Trigger: GAGGGCCACCAATCCTTTCCTGAATGAGACTCTGCAGGACGTACAGCCCTCGCCTATCAACCCGTTCAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GGCAGATGGGGTGTTTGGCTTCTTTGGAGAGGGGACTaGCGGCGAAGGGCAGCCGACTTCATTGTCTTCAAA +
Preference number: 6 (lower is better)
Translates to: GRWGVWLLWRGD*RRRAADFIVFK
Trigger: TTTGAAGACAATGAAGTCGGCTGCCCTTCGCCGCCAGTCCCCTCTCCAAAGAAGCCAAACACCCCATCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GTACGTCCTGCAGAGTCTCATTCAGGAAAGGATTGGTaGCCCTCCAGGGTGGGGCCTCGATTACAGAAGGTG +
Preference number: 6 (lower is better)
Translates to: VRPAESHSGKDW*PSRVGPRLQKV
Trigger: CACCTTCTGTAATCGAGGCCCCACCCTGGAGGGCCACCAATCCTTTCCTGAATGAGACTCTGCAGGACGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GCTGTACGTCCTGCAGAGTCTCATTCAGGAAAGGATTaGTGGCCCTCCAGGGTGGGGCCTCGATTACAGAAG +
Preference number: 6 (lower is better)
Translates to: AVRPAESHSGKD*WPSRVGPRLQK
Trigger: CTTCTGTAATCGAGGCCCCACCCTGGAGGGCCACCAATCCTTTCCTGAATGAGACTCTGCAGGACGTACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp CTGGAAGGCACTTCCCGGTCAGAGCCAAGCTCAAGGTaGCAAAAGAAACAGTGTGGGTGGCCAGAAGCTGAG +
Preference number: 6 (lower is better)
Translates to: LEGTSRSEPSSR*QKKQCGWPEAE
Trigger: CTCAGCTTCTGGCCACCCACACTGTTTCTTTTGCCACCTTGAGCTTGGCTCTGACCGGGAAGTGCCTTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp TCCAGTTCAACCGAGGCCGTGGGGTCGTCATCGGGCAGGGCTGTATaGCCGACGGGATCAGGATCATCAATTTGGAGTTGCTTGAGCTTT +
Preference number: 6 (lower is better)
Translates to: SSSTEAVGSSSGRAV*PTGSGSSIWSCLSF
Trigger: AAAGCTCAAGCAACTCCAAATTGATGATCCTGATCCCGTCGGCAATACAGCCCTGCCCGATGACGACCCCACGGCCTCGGTTGAACTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp ATGTCCTGCCGGGAAACGATTTCGTTCCCTTTGATGAGGATGTCATaGAGGCCCAAGCGGCACTCGGCGAGCCCAGAGAGGAAACTCAGT +
Preference number: 6 (lower is better)
Translates to: MSCRETISFPLMRMS*RPKRHSASPERKLS
Trigger: ACTGAGTTTCCTCTCTGGGCTCGCCGAGTGCCGCTTGGGCCTCAATGACATCCTCATCAAAGGGAACGAAATCGTTTCCCGGCAGGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp AGCCGGTTTATCCTCCACACAATGGAGTTGAAGGCGTGCTCATACTaGGCCGTTCCCAGAGTTACTCTCATGACGGGCTCGGAGCCAGAG +
Preference number: 6 (lower is better)
Translates to: SRFILHTMELKACSY*AVPRVTLMTGSEPE
Trigger: CTCTGGCTCCGAGCCCGTCATGAGAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGATAAACCGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp GGGGAACAATGGCTCTTCACTGAAGGAGACCCACTCTaGCTGGTGGGTGGCAATGACATGGTCCAAGGTCGT +
Preference number: 6 (lower is better)
Translates to: GEQWLFTEGDPL*LVGGNDMVQGR
Trigger: ACGACCTTGGACCATGTCATTGCCACCCACCAGTCAGAGTGGGTCTCCTTCAGTGAAGAGCCATTGTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
ENSMUST00000166967.2
ENSMUST00000170077.2
CDS GCA 72 bp TGGGACTGCTGGTGTCCTCAGAATGCGTGGTCCAACTaGTCTCCGACGTCAAAGGGCATCTTCTCAGAGAGT +
Preference number: 6 (lower is better)
Translates to: WDCWCPQNAWSN*SPTSKGIFSES
Trigger: ACTCTCTGAGAAGATGCCCTTTGACGTCGGAGAGCAGTTGGACCACGCATTCTGAGGACACCAGCAGTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp TGGAGCGGCAGGATGCCCATTCATGGCTGGACTGCCTaGCCACCAACTGATGGCTTCCATTTCTACTTCTTC +
Preference number: 6 (lower is better)
Translates to: WSGRMPIHGWTA*PPTDGFHFYFF
Trigger: GAAGAAGTAGAAATGGAAGCCATCAGTTGGTGGGCAGGCAGTCCAGCCATGAATGGGCATCCTGCCGCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp TCAGAGGAGTCATCCTGCTCAGAGTGTGAAAGGTCCTaGGAGCCTTCATCCACGACATGGTTCTCCCCAGAG +
Preference number: 6 (lower is better)
Translates to: SEESSCSECERS*EPSSTTWFSPE
Trigger: CTCTGGGGAGAACCATGTCGTGGATGAAGGCTCCCAGGACCTTTCACACTCTGAGCAGGATGACTCCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
ENSMUST00000170077.2
CDS CAA 72 bp ATTTCTACTTCTTCATCTTCCTGGAGGGAGGACGAGTaGTCGGTAGAGTCGGTCCCGGAAGCCCTGCCGCTT +
Preference number: 6 (lower is better)
Translates to: ISTSSSSWREDE*SVESVPEALPL
Trigger: AAGCGGCAGGGCTTCCGGGACCGACTCTACCGACAACTCGTCCTCCCTCCAGGAAGATGAAGAAGTAGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp GGCATGATGTCCTGCCGGGAAACGATTTCGTTCCCTTaGATGAGGATGTCATTGAGGCCCAAGCGGCACTCG +
Preference number: 6 (lower is better)
Translates to: GMMSCRETISFP*MRMSLRPKRHS
Trigger: CGAGTGCCGCTTGGGCCTCAATGACATCCTCATCAAAGGGAACGAAATCGTTTCCCGGCAGGACATCATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GTGCCCAGTTTAATTACCTGTTCCCGTTCCGCTGCGTaGGCCACAGCAGGTTTGGGCTGGTATTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: VPSLITCSRSAA*ATAGLGWYFFF
Trigger: GAAGAAGAAATACCAGCCCAAACCTGCTGTGGCCCACGCAGCGGAACGGGAACAGGTAATTAAACTGGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp CTCTTGGGACGGTCCCTCTTAAATGACCCAGTTGAGTaGAAAGGTACATCTGGGGCGGCAGTTGCGGCAGAT +
Preference number: 6 (lower is better)
Translates to: LLGRSLLNDPVE*KGTSGAAVAAD
Trigger: ATCTGCCGCAACTGCCGCCCCAGATGTACCTTTCAACTCAACTGGGTCATTTAAGAGGGACCGTCCCAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp ATCCTCCACACAATGGAGTTGAAGGCGTGCTCATACTaGGCCGTTCCCAGAGTTACTCTCATGACGGGCTCG +
Preference number: 6 (lower is better)
Translates to: ILHTMELKACSY*AVPRVTLMTGS
Trigger: CGAGCCCGTCATGAGAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp ATCAGTGTGCTCTTGGGACGGTCCCTCTTAAATGACCCAGTTGAGTaGAAAGGTACATCTGGGGCGGCAGTTGCGGCAGATGGGGTGTTT +
Preference number: 6 (lower is better)
Translates to: ISVLLGRSLLNDPVE*KGTSGAAVAADGVF
Trigger: AAACACCCCATCTGCCGCAACTGCCGCCCCAGATGTACCTTTCAACTCAACTGGGTCATTTAAGAGGGACCGTCCCAAGAGCACACTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp TGTCTGGCAGCCGGTTTATCCTCCACACAATGGAGTTaGAGGCGTGCTCATACTTGGCCGTTCCCAGAGTTA +
Preference number: 6 (lower is better)
Translates to: CLAAGLSSTQWS*RRAHTWPFPEL
Trigger: TAACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGATAAACCGGCTGCCAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp TCAAGACATGATGCTGTAAGATCTGGTTGTCTCCCTTaGCCACTGTGCCAGAGAACTCGTCTCGGACGTCCA +
Preference number: 6 (lower is better)
Translates to: SRHDAVRSGCLP*PLCQRTRLGRP
Trigger: TGGACGTCCGAGACGAGTTCTCTGGCACAGTGGGCAAGGGAGACAACCAGATCTTACAGCATCATGTCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp GGGAAGCCCTCTCCAGGCTACCTTGTAGCTGTAGTGTaGAGAATAATTGACCCACTTCCTGACGTCAGGCTT +
Preference number: 6 (lower is better)
Translates to: GKPSPGYLVAVV*RIIDPLPDVRL
Trigger: AAGCCTGACGTCAGGAAGTGGGTCAATTATTCTGCACACTACAGCTACAAGGTAGCCTGGAGAGGGCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164713.8
CDS CCA 72 bp CAACTGATGGCTTCCATTTCTACTTCTTCATCTTCCTaGAGGGAGGACGAGTTGTCGGTAGAGTCGGTCCCG +
Preference number: 6 (lower is better)
Translates to: QLMASISTSSSS*REDELSVESVP
Trigger: CGGGACCGACTCTACCGACAACTCGTCCTCCCTCCAGGAAGATGAAGAAGTAGAAATGGAAGCCATCAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 72 bp TTGTCTGGCAGCCGGTTTATCCTCCACACAATGGAGTaGAAGGCGTGCTCATACTTGGCCGTTCCCAGAGTT +
Preference number: 6 (lower is better)
Translates to: LSGSRFILHTME*KACSYLAVPRV
Trigger: AACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGATAAACCGGCTGCCAGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp GCTGAGTTCTTGTCTGGCAGCCGGTTTATCCTCCACACAATGGAGTaGAAGGCGTGCTCATACTTGGCCGTTCCCAGAGTTACTCTCATG +
Preference number: 6 (lower is better)
Translates to: AEFLSGSRFILHTME*KACSYLAVPRVTLM
Trigger: CATGAGAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGATAAACCGGCTGCCAGACAAGAACTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp TTTTGGGAGCGCCTTTCCTGCTCTTCAAAGAAAGCACTGAACGGGTaGATAGGCGAGGGCTGTACGTCCTGCAGAGTCTCATTCAGGAAA +
Preference number: 6 (lower is better)
Translates to: FWERLSCSSKKALNG*IGEGCTSCRVSFRK
Trigger: TTTCCTGAATGAGACTCTGCAGGACGTACAGCCCTCGCCTATCAACCCGTTCAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp CAGGTTTGGGCTGGTATTTCTTCTTCTCCTTGTAAGTaGCCCGGTCTATCCTCAAGCTGTGGATCCTCCCGT +
Preference number: 6 (lower is better)
Translates to: QVWAGISSSPCK*PGLSSSCGSSR
Trigger: ACGGGAGGATCCACAGCTTGAGGATAGACCGGGTCACTTACAAGGAGAAGAAGAAATACCAGCCCAAACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp AGCCGGTTTATCCTCCACACAATGGAGTTGAAGGCGTaGTCATACTTGGCCGTTCCCAGAGTTACTCTCATG +
Preference number: 6 (lower is better)
Translates to: SRFILHTMELKA*SYLAVPRVTLM
Trigger: CATGAGAGTAACTCTGGGAACGGCCAAGTATGAGCACGCCTTCAACTCCATTGTGTGGAGGATAAACCGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp TGGCTTTTGCCGGTGGTACTGGAAACGGAACTGTTTTaGGAGCGCCTTTCCTGCTCTTCAAAGAAAGCACTG +
Preference number: 6 (lower is better)
Translates to: WLLPVVLETELF*ERLSCSSKKAL
Trigger: CAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS TCA 72 bp TCACGGCTGCTTTGGAGGCAGAAGTCGTGGGCATGCTaGACTCAACGTTTACATAGTTGGCAAATCTGGAAG +
Preference number: 6 (lower is better)
Translates to: SRLLWRQKSWAC*TQRLHSWQIWK
Trigger: CTTCCAGATTTGCCAACTATGTAAACGTTGAGTTCAGCATGCCCACGACTTCTGCCTCCAAAGCAGCCGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp GTACTGGAAACGGAACTGTTTTGGGAGCGCCTTTCCTaGTCTTCAAAGAAAGCACTGAACGGGTTGATAGGC +
Preference number: 6 (lower is better)
Translates to: VLETELFWERLS*SSKKALNGLIG
Trigger: GCCTATCAACCCGTTCAGTGCTTTCTTTGAAGAGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp CCTGGTAGACGACAATCAGAGAATCTCTTTGGCTTTTaGCGGTGGTACTGGAAACGGAACTGTTTTGGGAGC +
Preference number: 6 (lower is better)
Translates to: PGRRQSENLFGF*RWYWKRNCFGS
Trigger: GCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATTGTCGTCTACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp CAATCAGAGAATCTCTTTGGCTTTTGCCGGTGGTACTaGAAACGGAACTGTTTTGGGAGCGCCTTTCCTGCT +
Preference number: 6 (lower is better)
Translates to: QSENLFGFCRWY*KRNCFGSAFPA
Trigger: AGCAGGAAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CAA 90 bp ATCAAAGCTGATGGCATCCTGGTAGACGACAATCAGAGAATCTCTTaGGCTTTTGCCGGTGGTACTGGAAACGGAACTGTTTTGGGAGCG +
Preference number: 6 (lower is better)
Translates to: IKADGILVDDNQRIS*AFAGGTGNGTVLGA
Trigger: CGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATTGTCGTCTACCAGGATGCCATCAGCTTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp AAATACGGTCCTAAACCTCATGAGCTCAAACCGGCATaGGTCCAAAGGGTTGAACAGAATAACCCGGGAACT +
Preference number: 6 (lower is better)
Translates to: KYGPKPHELKPA*VQRVEQNNPGT
Trigger: AGTTCCCGGGTTATTCTGTTCAACCCTTTGGACGCATGCCGGTTTGAGCTCATGAGGTTTAGGACCGTATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp GCCGGTTTAAGGAGGAAATGTCCAACTTTTGAACTTTaGGTAAGTTCATCAGTGTGCTCTTGGGACGGTCCC +
Preference number: 6 (lower is better)
Translates to: AGLRRKCPTFEL*VSSSVCSWDGP
Trigger: GGGACCGTCCCAAGAGCACACTGATGAACTTACCCAAAGTTCAAAAGTTGGACATTTCCTCCTTAAACCGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS CCA 72 bp AGACGACAATCAGAGAATCTCTTTGGCTTTTGCCGGTaGTACTGGAAACGGAACTGTTTTGGGAGCGCCTTT +
Preference number: 6 (lower is better)
Translates to: RRQSENLFGFCR*YWKRNCFGSAF
Trigger: AAAGGCGCTCCCAAAACAGTTCCGTTTCCAGTACCACCGGCAAAAGCCAAAGAGATTCTCTGATTGTCGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052969.15
ENSMUST00000164713.8
CDS GCA 72 bp CTTTTTCTGTTCAATTTCCACCTTGTAGCTGTAGTGTaGAGAATAATTGACCCACTTCCTGACGTCAGGCTT +
Preference number: 6 (lower is better)
Translates to: LFLFNFHLVAVV*RIIDPLPDVRL
Trigger: AAGCCTGACGTCAGGAAGTGGGTCAATTATTCTGCACACTACAGCTACAAGGTGGAAATTGAACAGAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052969.15