RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STOM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026880

Ensembl transcript IDs: ENSMUST00000028241.7

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGAGTGACCTTCGGCCTCGGAAGGGTCAGCGTGGGCCTCTCTGTTaGCTCCTACAGGATCAAGCAGGAGGAAGGAGAGGATCCCTCCCA +
Preference number: 1 (lower is better)
Translates to: RSDLRPRKGQRGPLC*LLQDQAGGRRGSLP
Trigger: TGGGAGGGATCCTCTCCTTCCTCCTGCTTGATCCTGTAGGAGCCAACAGAGAGGCCCACGCTGACCCTTCCGAGGCCGAAGGTCACTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR TCA 90 bp CTTAGGGACAGAGTGTCTGTCATGGGCTCCACGTGGGCCTGGCAGTaGACAGCTCAGGGCAGGTGTCAACAGTACTACTGTGACAGGGAA +
Preference number: 1 (lower is better)
Translates to: LRDRVSVMGSTWAWQ*TAQGRCQQYYCDRE
Trigger: TTCCCTGTCACAGTAGTACTGTTGACACCTGCCCTGAGCTGTTCACTGCCAGGCCCACGTGGAGCCCATGACAGACACTCTGTCCCTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR TCA 90 bp GGAGAGGATCCCTCCCAAACAAGCTCTGGGCTTAGACTGGGTGGATaGACTTTGGGGAAATACCCTTCCTTAAGGCGAGGTGGTGGTGGT +
Preference number: 1 (lower is better)
Translates to: GEDPSQTSSGLRLGG*TLGKYPSLRRGGGG
Trigger: ACCACCACCACCTCGCCTTAAGGAAGGGTATTTCCCCAAAGTTCATCCACCCAGTCTAAGCCCAGAGCTTGTTTGGGAGGGATCCTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 90 bp AGAGAAGTGGGTGGCACAATTCTTCAGTGTCATGGAACATCTACCTaGGCTCAGGTGGCATGTCTAGGCTGTGTCCCTTGCCCTGACTTG +
Preference number: 1 (lower is better)
Translates to: REVGGTILQCHGTST*AQVACLGCVPCPDL
Trigger: CAAGTCAGGGCAAGGGACACAGCCTAGACATGCCACCTGAGCCCAGGTAGATGTTCCATGACACTGAAGAATTGTGCCACCCACTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 90 bp ATATCCTCTCAAGGGAATGAATGCACAGGTGGCCAGAGAAGTGGGTaGCACAATTCTTCAGTGTCATGGAACATCTACCTGGGCTCAGGT +
Preference number: 1 (lower is better)
Translates to: ISSQGNECTGGQRSG*HNSSVSWNIYLGSG
Trigger: ACCTGAGCCCAGGTAGATGTTCCATGACACTGAAGAATTGTGCCACCCACTTCTCTGGCCACCTGTGCATTCATTCCCTTGAGAGGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 90 bp GGATTACTAATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTaGACAGGAAATTTAGAAAACCAGGGGCATTGTTTCCTGTCTCCA +
Preference number: 1 (lower is better)
Translates to: GLLIHKAQKQRPVGV*TGNLENQGHCFLSP
Trigger: TGGAGACAGGAAACAATGCCCCTGGTTTTCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATTAGTAATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 90 bp GCCTACTGGATTACTAATTCACAAGGCACAGAAGCAAAGGCCAGTTaGTGTCTGGACAGGAAATTTAGAAAACCAGGGGCATTGTTTCCT +
Preference number: 1 (lower is better)
Translates to: AYWITNSQGTEAKAS*CLDRKFRKPGALFP
Trigger: AGGAAACAATGCCCCTGGTTTTCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATTAGTAATCCAGTAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp CTGGGCTCAAGGCTTAGGGACAGAGTGTCTGTCATGGGCTCCACGTGGGCCTGGAAGGCGAGGTGGTGGTaGTGGCACTCGGGTGGGGCG +
Preference number: 2 (lower is better)
Translates to: LGSRLRDRVSVMGSTWAWKARWW*WHSGGA
Trigger: CGCCCCACCCGAGTGCCACCACCACCACCTCGCCTT...CCAGGCCCACGTGGAGCCCATGACAGACACTCTGTCCCTAAGCCTTGAGCCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR TCA 90 bp GCAAGGGGATCTCTGAGAGCAAGGCCAGGACAGCCAAGGCCACTCAGAGAAACCCTGTGTCCCTTGCCCTaGCTTGCCTGCTCATTCATG +
Preference number: 2 (lower is better)
Translates to: ARGSLRARPGQPRPLRETLCPLP*LACSFM
Trigger: CATGAATGAGCAGGCAAGTCAGGGCAAGGGACACAG...GGTTTCTCTGAGTGGCCTTGGCTGTCCTGGCCTTGCTCTCAGAGATCCCCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp GCAAGGGGATCTCTGAGAGCAAGGCCAGGACAGCCAAGGCCACTCAGAGAAACCACTGAGCTACACTCCTaGCTCCAGAGTGAGTCCCTC +
Preference number: 2 (lower is better)
Translates to: ARGSLRARPGQPRPLRETTELHS*LQSESL
Trigger: GAGGGACTCACTCTGGAGCCAGGAGTGTAGCTCAGT...GGTTTCTCTGAGTGGCCTTGGCTGTCCTGGCCTTGCTCTCAGAGATCCCCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp AGGATCAAGCAGGAGGAAGGAGAGGATCCCTCCCAAACAAGCTCTGGGCTTAGATTCCTTAAGGCGAGGTaGTGGTGGTGGCACTCGGGT +
Preference number: 2 (lower is better)
Translates to: RIKQEEGEDPSQTSSGLRFLKAR*WWWHSG
Trigger: ACCCGAGTGCCACCACCACCACCTCGCCTTAAGGAA...TCTAAGCCCAGAGCTTGTTTGGGAGGGATCCTCTCCTTCCTCCTGCTTGATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp AGGATCAAGCAGGAGGAAGGAGAGGATCCCTCCCAAACAAGCTCTGGGCTTAGAAGGTGGCCAGAGAAGTaGGTGGCACAATTCTTCAGT +
Preference number: 2 (lower is better)
Translates to: RIKQEEGEDPSQTSSGLRRWPEK*VAQFFS
Trigger: ACTGAAGAATTGTGCCACCCACTTCTCTGGCCACCT...TCTAAGCCCAGAGCTTGTTTGGGAGGGATCCTCTCCTTCCTCCTGCTTGATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR GCA 90 bp AGGATCAAGCAGGAGGAAGGAGAGGATCCCTCCCAAACAAGCTCTGGGCTTAGAAGAGTAAGAGAACTGTaGATAAGCCAGCCATCTCAT +
Preference number: 2 (lower is better)
Translates to: RIKQEEGEDPSQTSSGLRRVREL*ISQPSH
Trigger: ATGAGATGGCTGGCTTATGCACAGTTCTCTTACTCT...TCTAAGCCCAGAGCTTGTTTGGGAGGGATCCTCTCCTTCCTCCTGCTTGATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp ATCACAAGCTCTTGTGTTAGGGATTCCTTATGCTACTTAGGTAGGGTTAGTAATCTTAAGGCGAGGTGGTaGTGGTGGCACTCGGGTGGG +
Preference number: 2 (lower is better)
Translates to: ITSSCVRDSLCYLGRVSNLKARW*WWHSGG
Trigger: CCCACCCGAGTGCCACCACCACCACCTCGCCTTAAG...ATTACTAACCCTACCTAAGTAGCATAAGGAATCCCTAACACAAGAGCTTGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR GCA 90 bp AATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTGGACAGGAAATTTAGATCCCTTGCCCTGACTTaGCTGCTCATTCATGGTTCA +
Preference number: 2 (lower is better)
Translates to: NSQGTEAKASWCLDRKFRSLALT*LLIHGS
Trigger: TGAACCATGAATGAGCAGGCAAGTCAGGGCAAGGGA...TCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp AATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTGGACAGGAAATTTAGATTTCCTGGTCCTCAGTaGAAGGTGAGCTACTTCTAT +
Preference number: 2 (lower is better)
Translates to: NSQGTEAKASWCLDRKFRFPGPQ*KVSYFY
Trigger: ATAGAAGTAGCTCACCTTCCACTGAGGACCAGGAAA...TCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR GCA 90 bp AACATCTTTTTAAACTCAAAATGTAAATGCAACTTGAGTCCAGGTGGAAGTGCTCTAGGCTGTGTCCCTTaGCCTGACTTGCCTGCTCAT +
Preference number: 2 (lower is better)
Translates to: NIFLNSKCKCNLSPGGSALGCVP*PDLPAH
Trigger: ATGAGCAGGCAAGTCAGGGCAAGGGACACAGCCTAG...AGCACTTCCACCTGGACTCAAGTTGCATTTACATTTTGAGTTTAAAAAGATGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR CCA 90 bp AACATCTTTTTAAACTCAAAATGTAAATGCAACTTGAGTCCAGGTGGAAGTGCTGGCCAGAGAAGTGGGTaGCACAATTCTTCAGTGTCA +
Preference number: 2 (lower is better)
Translates to: NIFLNSKCKCNLSPGGSAGQRSG*HNSSVS
Trigger: TGACACTGAAGAATTGTGCCACCCACTTCTCTGGCC...AGCACTTCCACCTGGACTCAAGTTGCATTTACATTTTGAGTTTAAAAAGATGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR-3UTR TCA 90 bp AACATCTTTTTAAACTCAAAATGTAAATGCAACTTGAGTCCAGGTGGAAGTGCTCACAATAAGGAACTGTaGTCCTCTACTGGTTTTATA +
Preference number: 2 (lower is better)
Translates to: NIFLNSKCKCNLSPGGSAHNKEL*SSTGFI
Trigger: TATAAAACCAGTAGAGGATCACAGTTCCTTATTGTG...AGCACTTCCACCTGGACTCAAGTTGCATTTACATTTTGAGTTTAAAAAGATGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp CTTCGGCCTCGGAAGGGTCAGCGTGGGCCTCTCTGTTaGCTCCTACAGGATCAAGCAGGAGGAAGGAGAGGA +
Preference number: 3 (lower is better)
Translates to: LRPRKGQRGPLC*LLQDQAGGRRG
Trigger: TCCTCTCCTTCCTCCTGCTTGATCCTGTAGGAGCCAACAGAGAGGCCCACGCTGACCCTTCCGAGGCCGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR TCA 72 bp AGAGTGTCTGTCATGGGCTCCACGTGGGCCTGGCAGTaGACAGCTCAGGGCAGGTGTCAACAGTACTACTGT +
Preference number: 3 (lower is better)
Translates to: RVSVMGSTWAWQ*TAQGRCQQYYC
Trigger: ACAGTAGTACTGTTGACACCTGCCCTGAGCTGTTCACTGCCAGGCCCACGTGGAGCCCATGACAGACACTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR TCA 72 bp GTGCACCTACTATTTTCAAAAGGACTATGGCAGGAGTaGCCTTCGGCCTCGGAAGGGTCAGCGTGGGCCTCT +
Preference number: 3 (lower is better)
Translates to: VHLLFSKGLWQE*PSASEGSAWAS
Trigger: AGAGGCCCACGCTGACCCTTCCGAGGCCGAAGGTCACTCCTGCCATAGTCCTTTTGAAAATAGTAGGTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR GCA 72 bp ACCTGGGCTCAGGTGGCATGTCTAGGCTGTGTCCCTTaGCCTGACTTGCCTGCTCATTCATGGTTCAGAATG +
Preference number: 3 (lower is better)
Translates to: TWAQVACLGCVP*PDLPAHSWFRM
Trigger: CATTCTGAACCATGAATGAGCAGGCAAGTCAGGGCAAGGGACACAGCCTAGACATGCCACCTGAGCCCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR GCA 72 bp ATTCTCCCTGTGCACGGAGGGCTCAGCAGGGGCGTCTaGACAGGTCAATCACAAGCTCTTGTGTTAGGGATT +
Preference number: 3 (lower is better)
Translates to: ILPVHGGLSRGV*TGQSQALVLGI
Trigger: AATCCCTAACACAAGAGCTTGTGATTGACCTGTGCAGACGCCCCTGCTGAGCCCTCCGTGCACAGGGAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp GGTGGCACAATTCTTCAGTGTCATGGAACATCTACCTaGGCTCAGGTGGCATGTCTAGGCTGTGTCCCTTGC +
Preference number: 3 (lower is better)
Translates to: GGTILQCHGTST*AQVACLGCVPC
Trigger: GCAAGGGACACAGCCTAGACATGCCACCTGAGCCCAGGTAGATGTTCCATGACACTGAAGAATTGTGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp GGCCAGAGAAGTGGGTGGCACAATTCTTCAGTGTCATaGAACATCTACCTGGGCTCAGGTGGCATGTCTAGG +
Preference number: 3 (lower is better)
Translates to: GQRSGWHNSSVS*NIYLGSGGMSR
Trigger: CCTAGACATGCCACCTGAGCCCAGGTAGATGTTCCATGACACTGAAGAATTGTGCCACCCACTTCTCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR TCA 72 bp GGCTCAGGTGGCATGTCTAGGCTGTGTCCCTTGCCCTaGCTTGCCTGCTCATTCATGGTTCAGAATGAGTTA +
Preference number: 3 (lower is better)
Translates to: GSGGMSRLCPLP*LACSFMVQNEL
Trigger: TAACTCATTCTGAACCATGAATGAGCAGGCAAGTCAGGGCAAGGGACACAGCCTAGACATGCCACCTGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR TCA 72 bp CCCTCCCAAACAAGCTCTGGGCTTAGACTGGGTGGATaGACTTTGGGGAAATACCCTTCCTTAAGGCGAGGT +
Preference number: 3 (lower is better)
Translates to: PSQTSSGLRLGG*TLGKYPSLRRG
Trigger: ACCTCGCCTTAAGGAAGGGTATTTCCCCAAAGTTCATCCACCCAGTCTAAGCCCAGAGCTTGTTTGGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR GCA 72 bp CCAGGTGGAAGTGCTCTATACACCTCTAGAAAACCCTaGTGGGCTCAAGGCTTAGGGACAGAGTGTCTGTCA +
Preference number: 3 (lower is better)
Translates to: PGGSALYTSRKP*WAQGLGTECLS
Trigger: TGACAGACACTCTGTCCCTAAGCCTTGAGCCCAGCAGGGTTTTCTAGAGGTGTATAGAGCACTTCCACCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp GGTGGAAGTGCTCTATACACCTCTAGAAAACCCTGCTaGGCTCAAGGCTTAGGGACAGAGTGTCTGTCATGG +
Preference number: 3 (lower is better)
Translates to: GGSALYTSRKPC*AQGLGTECLSW
Trigger: CCATGACAGACACTCTGTCCCTAAGCCTTGAGCCCAGCAGGGTTTTCTAGAGGTGTATAGAGCACTTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp ATGCTAAGCAAGTCCTCTGCTACTGAGCTACACTCCTaGCTCCAGAGTGAGTCCCTCATCTGCCTTTATGAT +
Preference number: 3 (lower is better)
Translates to: MLSKSSATELHS*LQSESLICLYD
Trigger: ATCATAAAGGCAGATGAGGGACTCACTCTGGAGCCAGGAGTGTAGCTCAGTAGCAGAGGACTTGCTTAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp CAAGGGAATGAATGCACAGGTGGCCAGAGAAGTGGGTaGCACAATTCTTCAGTGTCATGGAACATCTACCTG +
Preference number: 3 (lower is better)
Translates to: QGNECTGGQRSG*HNSSVSWNIYL
Trigger: CAGGTAGATGTTCCATGACACTGAAGAATTGTGCCACCCACTTCTCTGGCCACCTGTGCATTCATTCCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp TGTGAGTTAAAGGCTAACTTTGTCCCCACTTTACCCTaGGAAGGATTCAGCACAGCTCTCCATAGACCTGGA +
Preference number: 3 (lower is better)
Translates to: CELKANFVPTLP*EGFSTALHRPG
Trigger: TCCAGGTCTATGGAGAGCTGTGCTGAATCCTTCCCAGGGTAAAGTGGGGACAAAGTTAGCCTTTAACTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR GCA 72 bp ACAAAACAATCCAAAATATCCTCTCAAGGGAATGAATaGACAGGTGGCCAGAGAAGTGGGTGGCACAATTCT +
Preference number: 3 (lower is better)
Translates to: TKQSKISSQGNE*TGGQRSGWHNS
Trigger: AGAATTGTGCCACCCACTTCTCTGGCCACCTGTGCATTCATTCCCTTGAGAGGATATTTTGGATTGTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CCA 72 bp ATTACTAATTCACAAGGCACAGAAGCAAAGGCCAGTTaGTGTCTGGACAGGAAATTTAGAAAACCAGGGGCA +
Preference number: 3 (lower is better)
Translates to: ITNSQGTEAKAS*CLDRKFRKPGA
Trigger: TGCCCCTGGTTTTCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATTAGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
3UTR CAA 72 bp CCTTCGGCCTCGGAAGGGTCAGCGTGGGCCTCTCTGTaGGCTCCTACAGGATCAAGCAGGAGGAAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: PSASEGSAWASL*APTGSSRRKER
Trigger: CCTCTCCTTCCTCCTGCTTGATCCTGTAGGAGCCAACAGAGAGGCCCACGCTGACCCTTCCGAGGCCGAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR TCA 90 bp AGGAAGGAGAGGATCCCTCCCAAACAAGCTCTGGGCTTAGACTGGGTGGATGAACCACCCGCTCCACCTTaGTCCCCCAGTCATCCGTGG +
Preference number: 4 (lower is better)
Translates to: RKERIPPKQALGLDWVDEPPAPP*SPSHPW
Trigger: CCACGGATGACTGGGGGATCAAGGTGGAGCGGGTGG...TTCATCCACCCAGTCTAAGCCCAGAGCTTGTTTGGGAGGGATCCTCTCCTTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp ATTAGCTGCTTTAAAGGCCACACACAGAGGGGTCATCAAGTCAGGGAGGGGAGGCTCCCGGGCGGCTTCTaGCTCTGCAGCCATGGCTCT +
Preference number: 4 (lower is better)
Translates to: ISCFKGHTQRGHQVREGRLPGGF*LCSHGS
Trigger: AGAGCCATGGCTGCAGAGGCAGAAGCCGCCCGGGAG...CCTCCCCTCCCTGACTTGATGACCCCTCTGTGTGTGGCCTTTAAAGCAGCTAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR TCA 90 bp AGGAAGGAGAGGATCCCTCCCAAACAAGCTCTGGGCTTAGACTGGGTGGATGAACTGTCAGAGAGGATTTaGGACAGGTTCTTGGTGCCC +
Preference number: 4 (lower is better)
Translates to: RKERIPPKQALGLDWVDELSERI*DRFLVP
Trigger: GGGCACCAAGAACCTGTCTCAAATCCTCTCTGACAG...TTCATCCACCCAGTCTAAGCCCAGAGCTTGTTTGGGAGGGATCCTCTCCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR TCA 90 bp TCTGCTACTGAGCTACACTCCTGGCTCCAGAGTGAGTCCCTCATCTGCCTTTATTCTTGGAATTTTCTCTaGAGGACTCAGGGATCCGCT +
Preference number: 4 (lower is better)
Translates to: SATELHSWLQSESLICLYSWNFL*RTQGSA
Trigger: AGCGGATCCCTGAGTCCTTCAGAGAAAATTCCAAGA...ATAAAGGCAGATGAGGGACTCACTCTGGAGCCAGGAGTGTAGCTCAGTAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp AGTGAACAGCTCAGGGCAGGTGTCAACAGTACTACTGTGACAGGGAACCATTCTGGTGGAGTTTTTCTCTaGAGCGATAGTGGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: SEQLRAGVNSTTVTGNHSGGVFL*SDSGQG
Trigger: ACCCTGACCACTATCGCTGCAGAGAAAAACTCCACC...AGAATGGTTCCCTGTCACAGTAGTACTGTTGACACCTGCCCTGAGCTGTTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CCA 90 bp TCTGCTACTGAGCTACACTCCTGGCTCCAGAGTGAGTCCCTCATCTGCCTTTATCTTCTTTCAGAGCTCTaGACGCATTCATTTCCCCTT +
Preference number: 4 (lower is better)
Translates to: SATELHSWLQSESLICLYLLSEL*THSFPL
Trigger: AAGGGGAAATGAATGCGTCCAGAGCTCTGAAAGAAG...ATAAAGGCAGATGAGGGACTCACTCTGGAGCCAGGAGTGTAGCTCAGTAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR TCA 90 bp CTAATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTGGACAGGAAATTTACTGAATCTGCATTGGTaGTATTGGCCACAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: LIHKAQKQRPVGVWTGNLLNLHW*YWPQPG
Trigger: CCCTGGCTGTGGCCAATATCACCAATGCAGATTCAG...TAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp GTGAGTCCCTCATCTGCCTTTATGATTTCTATCCATTCTAAAAGCCCCTCTAGTGGCCACAGCCAGGGTTaGGTTCTGAACACGGTAGTA +
Preference number: 4 (lower is better)
Translates to: VSPSSAFMISIHSKSPSSGHSQG*VLNTVV
Trigger: TACTACCGTGTTCAGAACGCAACCCTGGCTGTGGCC...ACTAGAGGGGCTTTTAGAATGGATAGAAATCATAAAGGCAGATGAGGGACTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp AATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTGGACAGGAAATTTAGATTAGTGAGGACCTCCTaGGGAGGAATGTCAAAGGAG +
Preference number: 4 (lower is better)
Translates to: NSQGTEAKASWCLDRKFRLVRTS*GGMSKE
Trigger: CTCCTTTGACATTCCTCCGCAGGAGGTCCTCACTAA...TCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp AATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTGGACAGGAAATTTAGAACTCTGCATGTGGTGTaGAATCTCTTCTCTGTCAGA +
Preference number: 4 (lower is better)
Translates to: NSQGTEAKASWCLDRKFRTLHVV*NLFSVR
Trigger: TCTGACAGAGAAGAGATTGCACACCACATGCAGAGT...TCTAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp ATCACAAGCTCTTGTGTTAGGGATTCCTTATGCTACTTAGGTAGGGTTAGTAATCATTTCCCCTTCAGCTaGAATCACCTTGGCCCTAGC +
Preference number: 4 (lower is better)
Translates to: ITSSCVRDSLCYLGRVSNHFPFS*NHLGPS
Trigger: GCTAGGGCCAAGGTGATTGCAGCTGAAGGGGAAATG...ATTACTAACCCTACCTAAGTAGCATAAGGAATCCCTAACACAAGAGCTTGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CCA 90 bp TCTCATTCTCTCGTTATTTACAAGCCAACATGTCTCTGTTTTGGTGCTGAGGATAGCGTACTCTGCATGTaGTGTGCAATCTCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: SHSLVIYKPTCLCFGAEDSVLCM*CAISSL
Trigger: CAGAGAAGAGATTGCACACCACATGCAGAGTACGCT...ATCCTCAGCACCAAAACAGAGACATGTTGGCTTGTAAATAACGAGAGAATGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR GCA 90 bp AACATCTTTTTAAACTCAAAATGTAAATGCAACTTGAGTCCAGGTGGAAGTGCTCCTTTGGCGCCTCCTTaGAAAATGCGACCCAGTCTA +
Preference number: 4 (lower is better)
Translates to: NIFLNSKCKCNLSPGGSAPLAPP*KMRPSL
Trigger: TAGACTGGGTCGCATTTTGCAAGGAGGCGCCAAAGG...AGCACTTCCACCTGGACTCAAGTTGCATTTACATTTTGAGTTTAAAAAGATGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CCA 90 bp TCATCTGCCTTTATGATTTCTATCCATTCTAAAAGCCCCTCTAGTGAACATACATCTCTGGAGCTGCACTaGCAGCTTCACGTCCTTAAT +
Preference number: 4 (lower is better)
Translates to: SSAFMISIHSKSPSSEHTSLELH*QLHVLN
Trigger: ATTAAGGACGTGAAGCTGCCAGTGCAGCTCCAGAGA...TGTATGTTCACTAGAGGGGCTTTTAGAATGGATAGAAATCATAAAGGCAGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR TCA 90 bp TCTCATTCTCTCGTTATTTACAAGCCAACATGTCTCTGTTTTGGTGCTGAGGATCAAAAGACGGGTTGCTaGATCTGCATTGGTGATATT +
Preference number: 4 (lower is better)
Translates to: SHSLVIYKPTCLCFGAEDQKTGC*ICIGDI
Trigger: AATATCACCAATGCAGATTCAGCAACCCGTCTTTTG...ATCCTCAGCACCAAAACAGAGACATGTTGGCTTGTAAATAACGAGAGAATGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CCA 90 bp TCATCTGCCTTTATGATTTCTATCCATTCTAAAAGCCCCTCTAGTGAACATACAGCAGAGGGAAGACAATaGTGGAGTTTTTCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: SSAFMISIHSKSPSSEHTAEGRQ*WSFSLQ
Trigger: CTGCAGAGAAAAACTCCACCATTGTCTTCCCTCTGC...TGTATGTTCACTAGAGGGGCTTTTAGAATGGATAGAAATCATAAAGGCAGATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS GCA 90 bp AGCTGCAATCACCTTGGCCCTAGCCTCCCGGGCGGCTTCTGCCTCTaGAGCCATGGCTCTCTGGAGCTGCACTGGCAGCTTCACGTCCTT +
Preference number: 5 (lower is better)
Translates to: SCNHLGPSLPGGFCL*SHGSLELHWQLHVL
Trigger: AAGGACGTGAAGCTGCCAGTGCAGCTCCAGAGAGCCATGGCTGCAGAGGCAGAAGCCGCCCGGGAGGCTAGGGCCAAGGTGATTGCAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp AGTCCTCTGCTACTGAGCTACACTCCTGGCTCCAGAGTGAGTCCCTCATCTGCCTGGCCACAGCCAGGGTaGCGTTCTGAACACGGTAGT +
Preference number: 5 (lower is better)
Translates to: SPLLLSYTPGSRVSPSSAWPQPG*RSEHGS
Trigger: ACTACCGTGTTCAGAACGCAACCCTGGCTGTGGCCA...GGCAGATGAGGGACTCACTCTGGAGCCAGGAGTGTAGCTCAGTAGCAGAGGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS GCA 90 bp CCCCCAGTCATCCGTGGCATCGTCCAGCGTACTCTGCATGTGGTGTaGAATCTCTTCTCTGTCAGAGAGGATTTGAGACAGGTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: PPVIRGIVQRTLHVV*NLFSVREDLRQVLG
Trigger: ACCAAGAACCTGTCTCAAATCCTCTCTGACAGAGAAGAGATTGCACACCACATGCAGAGTACGCTGGACGATGCCACGGATGACTGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS TCA 90 bp CCAAAATCCATCCACAAGCTCCCAGTTCTGTCTTGGAATTTTCTCTaGAGGACTCAGGGATCCGCTGAGACTGGACATGGCTGGACTGCC +
Preference number: 5 (lower is better)
Translates to: PKSIHKLPVLSWNFL*RTQGSAETGHGWTA
Trigger: GGCAGTCCAGCCATGTCCAGTCTCAGCGGATCCCTGAGTCCTTCAGAGAAAATTCCAAGACAGAACTGGGAGCTTGTGGATGGATTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp AAGGCTAACTTTGTCCCCACTTTACCCTGGGAAGGATTCAGCACAGCTCTCCATGTCCTCATGTCCACCTaGATGAGGCTGTCAGTGCAC +
Preference number: 5 (lower is better)
Translates to: KANFVPTLPWEGFSTALHVLMST*MRLSVH
Trigger: GTGCACTGACAGCCTCATCAAGGTGGACATGAGGAC...ATGGAGAGCTGTGCTGAATCCTTCCCAGGGTAAAGTGGGGACAAAGTTAGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp CAGCTCAGGGCAGGTGTCAACAGTACTACTGTGACAGGGAACCATTCTTCCAGGATTCCTGAGGGTAGTTaGTGCCAAAAGACGGGTTGC +
Preference number: 5 (lower is better)
Translates to: QLRAGVNSTTVTGNHSSRIPEGS*CQKTGC
Trigger: GCAACCCGTCTTTTGGCACAAACTACCCTCAGGAAT...CCTGGAAGAATGGTTCCCTGTCACAGTAGTACTGTTGACACCTGCCCTGAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp CAGCTCAGGGCAGGTGTCAACAGTACTACTGTGACAGGGAACCATTCTTCCAGGTCTGTCAGAGAGGATTaGAGACAGGTTCTTGGTGCC +
Preference number: 5 (lower is better)
Translates to: QLRAGVNSTTVTGNHSSRSVRED*RQVLGA
Trigger: GGCACCAAGAACCTGTCTCAAATCCTCTCTGACAGA...CCTGGAAGAATGGTTCCCTGTCACAGTAGTACTGTTGACACCTGCCCTGAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp CAGCTCAGGGCAGGTGTCAACAGTACTACTGTGACAGGGAACCATTCTTCCAGGGCTCCCAGTTCTGTCTaGGAATTTTCTCTGAAGGAC +
Preference number: 5 (lower is better)
Translates to: QLRAGVNSTTVTGNHSSRAPSSV*EFSLKD
Trigger: GTCCTTCAGAGAAAATTCCAAGACAGAACTGGGAGC...CCTGGAAGAATGGTTCCCTGTCACAGTAGTACTGTTGACACCTGCCCTGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS TCA 90 bp GTACTCTGCATGTGGTGTGCAATCTCTTCTCTGTCAGAGAGGATTTaGGACAGGTTCTTGGTGCCCAGCGCATTCCTGAGGGTAGTTTGT +
Preference number: 5 (lower is better)
Translates to: VLCMWCAISSLSERI*DRFLVPSAFLRVVC
Trigger: ACAAACTACCCTCAGGAATGCGCTGGGCACCAAGAACCTGTCTCAAATCCTCTCTGACAGAGAAGAGATTGCACACCACATGCAGAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp CTAATTCACAAGGCACAGAAGCAAAGGCCAGTTGGTGTCTGGACAGGAAATTTATCTGCATTGGTGATATaGGCCACAGCCAGGGTTGCG +
Preference number: 5 (lower is better)
Translates to: LIHKAQKQRPVGVWTGNLSALVI*ATARVA
Trigger: CGCAACCCTGGCTGTGGCCAATATCACCAATGCAGA...TAAATTTCCTGTCCAGACACCAACTGGCCTTTGCTTCTGTGCCTTGTGAATTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS-3UTR CAA 90 bp TCTCATTCTCTCGTTATTTACAAGCCAACATGTCTCTGTTTTGGTGCTGAGGATTCCTTTGGCGCCTCCTaGCAAAATGCGACCCAGTCT +
Preference number: 5 (lower is better)
Translates to: SHSLVIYKPTCLCFGAEDSFGAS*QNATQS
Trigger: AGACTGGGTCGCATTTTGCAAGGAGGCGCCAAAGGA...ATCCTCAGCACCAAAACAGAGACATGTTGGCTTGTAAATAACGAGAGAATGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS GCA 72 bp ATCCCCCAGTCATCCGTGGCATCGTCCAGCGTACTCTaGATGTGGTGTGCAATCTCTTCTCTGTCAGAGAGG +
Preference number: 6 (lower is better)
Translates to: IPQSSVASSSVL*MWCAISSLSER
Trigger: CCTCTCTGACAGAGAAGAGATTGCACACCACATGCAGAGTACGCTGGACGATGCCACGGATGACTGGGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS TCA 72 bp GTCTTGGAATTTTCTCTGAAGGACTCAGGGATCCGCTaGGACTGGACATGGCTGGACTGCCGTTTGTCAGAC +
Preference number: 6 (lower is better)
Translates to: VLEFSLKDSGIR*DWTWLDCRLSD
Trigger: GTCTGACAAACGGCAGTCCAGCCATGTCCAGTCTCAGCGGATCCCTGAGTCCTTCAGAGAAAATTCCAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS GCA 72 bp ACACTGATTGTCACCGAGTCCTTAGTGAGGACCTCCTaGGGAGGAATGTCAAAGGAGATGGTCCTCATGTCC +
Preference number: 6 (lower is better)
Translates to: TLIVTESLVRTS*GGMSKEMVLMS
Trigger: GGACATGAGGACCATCTCCTTTGACATTCCTCCGCAGGAGGTCCTCACTAAGGACTCGGTGACAATCAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS CAA 90 bp CGTACTCTGCATGTGGTGTGCAATCTCTTCTCTGTCAGAGAGGATTaGAGACAGGTTCTTGGTGCCCAGCGCATTCCTGAGGGTAGTTTG +
Preference number: 6 (lower is better)
Translates to: RTLHVVCNLFSVRED*RQVLGAQRIPEGSL
Trigger: CAAACTACCCTCAGGAATGCGCTGGGCACCAAGAACCTGTCTCAAATCCTCTCTGACAGAGAAGAGATTGCACACCACATGCAGAGTACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS TCA 72 bp ATCCACAAGCTCCCAGTTCTGTCTTGGAATTTTCTCTaGAGGACTCAGGGATCCGCTGAGACTGGACATGGC +
Preference number: 6 (lower is better)
Translates to: IHKLPVLSWNFL*RTQGSAETGHG
Trigger: GCCATGTCCAGTCTCAGCGGATCCCTGAGTCCTTCAGAGAAAATTCCAAGACAGAACTGGGAGCTTGTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS GCA 72 bp ATCCGTGGCATCGTCCAGCGTACTCTGCATGTGGTGTaGAATCTCTTCTCTGTCAGAGAGGATTTGAGACAG +
Preference number: 6 (lower is better)
Translates to: IRGIVQRTLHVV*NLFSVREDLRQ
Trigger: CTGTCTCAAATCCTCTCTGACAGAGAAGAGATTGCACACCACATGCAGAGTACGCTGGACGATGCCACGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS GCA 72 bp GACGGGCAGAGGGAAGACAATGGTGGAGTTTTTCTCTaGAGCGATAGTGGTCAGGGTTTGAAGGTATCGAAG +
Preference number: 6 (lower is better)
Translates to: DGQREDNGGVFL*SDSGQGLKVSK
Trigger: CTTCGATACCTTCAAACCCTGACCACTATCGCTGCAGAGAAAAACTCCACCATTGTCTTCCCTCTGCCCGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7
CDS TCA 72 bp TTTGTGCCAAAAGACGGGTTGCTGAATCTGCATTGGTaGTATTGGCCACAGCCAGGGTTGCGTTCTGAACAC +
Preference number: 6 (lower is better)
Translates to: FVPKDGLLNLHW*YWPQPGLRSEH
Trigger: GTGTTCAGAACGCAACCCTGGCTGTGGCCAATATCACCAATGCAGATTCAGCAACCCGTCTTTTGGCACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028241.7