Pregenerated sensors for STMND1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063529Ensembl transcript IDs: ENSMUST00000076622.4
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTaGCACAAACATAATTTAGGTAAGCTGGCATGGACTTTGAATCTA | + |
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Preference number: 1 (lower is better) Translates to: LQAQPRSETIRQNFF*HKHNLGKLAWTLNL Trigger: TAGATTCAAAGTCCATGCCAGCTTACCTAAATTATGTTTGTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| 3UTR-3UTR CAA 90 bp | CATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACAAGCTGGCATGGACTTaGAATCTAAGATCTCTAACT | + |
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Preference number: 3 (lower is better) Translates to: HLQAQPRSETIRQNFFWHKLAWT*NLRSLT Trigger: AGTTAGAGATCTTAGATTCAAAGTCCATGCCAGCTT...GTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| 3UTR CCA 72 bp | CAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTaGCACAAACATAATTTAGGTAAGCTGGCATGGACT | + |
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Preference number: 3 (lower is better) Translates to: QPRSETIRQNFF*HKHNLGKLAWT Trigger: AGTCCATGCCAGCTTACCTAAATTATGTTTGTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| 3UTR CCA 72 bp | TTCTTTTGGCACAAACATAATTTAGGTAAGCTGGCATaGACTTTGAATCTAAGATCTCTAACTAGTGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: FFWHKHNLGKLA*TLNLRSLTSAG Trigger: TCCAGCACTAGTTAGAGATCTTAGATTCAAAGTCCATGCCAGCTTACCTAAATTATGTTTGTGCCAAAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | GCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACAAACACTTCCCAGCCCTTCCTaGGAGAGGGTATGCGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: AGTAKVRNDKAEFLLAQTLPSPS*ERVCGS Trigger: AGAGCCGCATACCCTCTCCCAGGAAGGGCTGGGAAG...TGTTTGTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR GCA 90 bp | AGGACTCATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTCTCTGGTCCTCCTTTTaGTGGGAAGGTCCACAGCCC | + |
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Preference number: 4 (lower is better) Translates to: RTHLQAQPRSETIRQNFFLWSSF*WEGPQP Trigger: GGGCTGTGGACCTTCCCAGCAAAAGGAGGACCAGAG...AAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATGAGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | GCTCACAAAACCATCCCTAAACCCAGGGCAGAAATCTTTACAAGTAGAGACAGTATGCGGCTCTGGCTCTaGTCCTCCTTTTGCTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: AHKTIPKPRAEIFTSRDSMRLWL*SSFCWE Trigger: TTCCCAGCAAAAGGAGGACCAGAGCCAGAGCCGCAT...ACTGTCTCTACTTGTAAAGATTTCTGCCCTGGGTTTAGGGATGGTTTTGTGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR TCA 90 bp | CATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACTGGAAGAAGTTACTCTaGCATCAGCCTTGGATCCCT | + |
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Preference number: 4 (lower is better) Translates to: HLQAQPRSETIRQNFFWHWKKLL*HQPWIP Trigger: AGGGATCCAAGGCTGATGTCAGAGTAACTTCTTCCA...GTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR TCA 90 bp | CATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACTGCTCCGGCTCTGTATaGTTCCTTGGACAATTAGCT | + |
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Preference number: 4 (lower is better) Translates to: HLQAQPRSETIRQNFFWHCSGSV*FLGQLA Trigger: AGCTAATTGTCCAAGGAATCATACAGAGCCGGAGCA...GTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR GCA 90 bp | CATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACAGTGGCTCTCCTTCCTaGACATCAGACTTCTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: HLQAQPRSETIRQNFFWHSGSPS*TSDFSK Trigger: TTTGGAGAAGTCTGATGTGCAGGAAGGAGAGCCACT...GTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | AGGACTCATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTTTTGGCGTTGTCTATaGTGTGCTTGGGCCATGCAG | + |
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Preference number: 4 (lower is better) Translates to: RTHLQAQPRSETIRQNFFFWRCL*CAWAMQ Trigger: CTGCATGGCCCAAGCACACCATAGACAACGCCAAAA...AAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATGAGTCCT 48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR GCA 90 bp | GCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACAAACACGCTCCTCTGCTGCCTaGATCTTTTCTTCTATGTCT | + |
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Preference number: 4 (lower is better) Translates to: AGTAKVRNDKAEFLLAQTRSSAA*IFSSMS Trigger: AGACATAGAAGAAAAGATGCAGGCAGCAGAGGAGCG...TGTTTGTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | AGGACTCATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGTCTATGGTGTGCTTaGGCCATGCAGCTTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: RTHLQAQPRSETIRQNFFCLWCA*AMQLQF Trigger: AAACTGAAGCTGCATGGCCCAAGCACACCATAGACA...AAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATGAGTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | AGGACTCATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTCTTTTTCAGTCTGGCTaGTGGCTTTCTCAGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: RTHLQAQPRSETIRQNFFLFQSG*WLSQWL Trigger: AAGCCACTGAGAAAGCCACCAGCCAGACTGAAAAAG...AAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATGAGTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR TCA 90 bp | AGGACTCATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTGTTGTAATACATGTCTaGCTCCACAAGCTCCAAACC | + |
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Preference number: 4 (lower is better) Translates to: RTHLQAQPRSETIRQNFFVVIHV*LHKLQT Trigger: GGTTTGGAGCTTGTGGAGTCAGACATGTATTACAAC...AAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATGAGTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | GCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACAAACAAGTTGGAGAATTTTCTaGAATAGTCCCAGGCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: AGTAKVRNDKAEFLLAQTSWRIF*NSPRQA Trigger: AGCTTGCCTGGGACTATTCCAGAAAATTCTCCAACT...TGTTTGTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACCAACTCTCCGGGAGTTaGGGTTTGTTGGTCAATCCA | + |
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Preference number: 4 (lower is better) Translates to: PGQKSLQVETVIFKTVRHQLSGS*GLLVNP Trigger: TGGATTGACCAACAAACCCCAACTCCCGGAGAGTTG...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | GCTCACAAAACCATCCCTAAACCCAGGGCAGAAATCTTTACAAGTAGAGACAGTCTCTGTATGATTCCTTaGACAATTAGCTCTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: AHKTIPKPRAEIFTSRDSLCMIP*TISSSR Trigger: CCTGGAAGAGCTAATTGTCCAAGGAATCATACAGAG...ACTGTCTCTACTTGTAAAGATTTCTGCCCTGGGTTTAGGGATGGTTTTGTGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACCCTATCTGTGCTTGTTaGTCCAGACTTTTGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: PGQKSLQVETVIFKTVRHPICAC*SRLLAL Trigger: CAACGCCAAAAGTCTGGACCAACAAGCACAGATAGG...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACAGGGGTGTTCACAGCTaGAAGGCCTTTTGTAAATGG | + |
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Preference number: 4 (lower is better) Translates to: PGQKSLQVETVIFKTVRHRGVHS*KAFCKW Trigger: CCATTTACAAAAGGCCTTCCAGCTGTGAACACCCCT...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR TCA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACATTGGCCACTGGGTCTaGATTTATTCTCCTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: PGQKSLQVETVIFKTVRHIGHWV*IYSPAC Trigger: ACAAGCAGGAGAATAAATTCAGACCCAGTGGCCAAT...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CCA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACCATGCAGCTTCAGTTTaGGGACTGCAATTTTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: PGQKSLQVETVIFKTVRHHAASV*GLQFSL Trigger: CAAAGAAAATTGCAGTCCCCAAACTGAAGCTGCATG...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| 3UTR CAA 72 bp | TGGCACAAACATAATTTAGGTAAGCTGGCATGGACTTaGAATCTAAGATCTCTAACTAGTGCTGGAGCCATT | + |
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Preference number: 4 (lower is better) Translates to: WHKHNLGKLAWT*NLRSLTSAGAI Trigger: AATGGCTCCAGCACTAGTTAGAGATCTTAGATTCAAAGTCCATGCCAGCTTACCTAAATTATGTTTGTGCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CAA 90 bp | CATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACACTCTGACATCAGCCTaGGATCCCTCTTCCCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: HLQAQPRSETIRQNFFWHTLTSA*DPSSQP Trigger: GGGCTGGGAAGAGGGATCCAAGGCTGATGTCAGAGT...GTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 90 bp | TCCAGGATGTCTGATGACTTTGGCCGCTCCCAACTCTCCGGGAGTTaGGGTTTGTTGGTCAATCCATTGGCCACTGGGTCTGAATTTATT | + |
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Preference number: 5 (lower is better) Translates to: SRMSDDFGRSQLSGS*GLLVNPLATGSEFI Trigger: AATAAATTCAGACCCAGTGGCCAATGGATTGACCAACAAACCCCAACTCCCGGAGAGTTGGGAGCGGCCAAAGTCATCAGACATCCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CAA 90 bp | GCTCACAAAACCATCCCTAAACCCAGGGCAGAAATCTTTACAAGTAGAGACAGTGGATGTCTGATGACTTaGGCCGCTCCCAACTCTCCG | + |
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Preference number: 5 (lower is better) Translates to: AHKTIPKPRAEIFTSRDSGCLMT*AAPNSP Trigger: CGGAGAGTTGGGAGCGGCCAAAGTCATCAGACATCC...ACTGTCTCTACTTGTAAAGATTTCTGCCCTGGGTTTAGGGATGGTTTTGTGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 90 bp | GAATTTTCTGGAATAGTCCCAGGCAAGCTTCCTATCTGTGCTTGTTaGTCCAGACTTTTGGCGTTGTCTATGGTGTGCTTGGGCCATGCA | + |
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Preference number: 5 (lower is better) Translates to: EFSGIVPGKLPICAC*SRLLALSMVCLGHA Trigger: TGCATGGCCCAAGCACACCATAGACAACGCCAAAAGTCTGGACCAACAAGCACAGATAGGAAGCTTGCCTGGGACTATTCCAGAAAATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS GCA 90 bp | AGTTGGAGAATTTTCTGGAATAGTCCCAGGCAAGCTTCCTATCTGTaGTTGTTGGTCCAGACTTTTGGCGTTGTCTATGGTGTGCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SWRIFWNSPRQASYL*LLVQTFGVVYGVLG Trigger: CCCAAGCACACCATAGACAACGCCAAAAGTCTGGACCAACAAGCACAGATAGGAAGCTTGCCTGGGACTATTCCAGAAAATTCTCCAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 90 bp | GACTCTCCATTTCTAAATACTTTGCTCCGGCTCTGTATGATTCCTTaGACAATTAGCTCTTCCAGGATGTCTGATGACTTTGGCCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: DSPFLNTLLRLCMIP*TISSSRMSDDFGRS Trigger: GGAGCGGCCAAAGTCATCAGACATCCTGGAAGAGCTAATTGTCCAAGGAATCATACAGAGCCGGAGCAAAGTATTTAGAAATGGAGAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CAA 90 bp | CATCTGCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACCCATTTCTAAATACTTaGCTCCGGCTCTGTATGATT | + |
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Preference number: 5 (lower is better) Translates to: HLQAQPRSETIRQNFFWHPFLNT*LRLCMI Trigger: AATCATACAGAGCCGGAGCAAAGTATTTAGAAATGG...GTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGCAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CAA 90 bp | GCAGGCACAGCCAAGGTCAGAAACGATAAGGCAGAATTTCTTTTGGCACAAACAGGACTGCAATTTTCTTaGGAAGAAGTTACTCTGACA | + |
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Preference number: 5 (lower is better) Translates to: AGTAKVRNDKAEFLLAQTGLQFS*EEVTLT Trigger: TGTCAGAGTAACTTCTTCCAAAGAAAATTGCAGTCC...TGTTTGTGCCAAAAGAAATTCTGCCTTATCGTTTCTGACCTTGGCTGTGCCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CAA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACTTGTCTATGGTGTGCTaGGGCCATGCAGCTTCAGTT | + |
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Preference number: 5 (lower is better) Translates to: PGQKSLQVETVIFKTVRHLSMVC*GHAASV Trigger: AACTGAAGCTGCATGGCCCAAGCACACCATAGACAA...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS-3UTR CAA 90 bp | CCAGGGCAGAAATCTTTACAAGTAGAGACAGTCATTTTTAAGACTGTAAGACACTTATTTCCTCCTTTTTaGTCTTTCGGCGCTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: PGQKSLQVETVIFKTVRHLFPPF*SFGAPL Trigger: CAGAGGAGCGCCGAAAGACAAAAAAGGAGGAAATAA...GTGTCTTACAGTCTTAAAAATGACTGTCTCTACTTGTAAAGATTTCTGCCCTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS TCA 72 bp | TGGAACCTCCACCCTGCCCGGTGGTTCAGCTTCGTCTaGAGGGTTAGCTGTGGGCAGAAGCCGGTCACTCCG | + |
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Preference number: 6 (lower is better) Translates to: WNLHPARWFSFV*RVSCGQKPVTP Trigger: CGGAGTGACCGGCTTCTGCCCACAGCTAACCCTTCAGACGAAGCTGAACCACCGGGCAGGGTGGAGGTTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 72 bp | TCTTCCCAGCCCTTCCTGGGAGAGGGTATGCGGCTCTaGCTCTGGTCCTCCTTTTGCTGGGAAGGTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: SSQPFLGEGMRL*LWSSFCWEGPQ Trigger: CTGTGGACCTTCCCAGCAAAAGGAGGACCAGAGCCAGAGCCGCATACCCTCTCCCAGGAAGGGCTGGGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 72 bp | AGCAGGGGTGTTCACAGCTGGAAGGCCTTTTGTAAATaGAACCTCCACCCTGCCCGGTGGTTCAGCTTCGTC | + |
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Preference number: 6 (lower is better) Translates to: SRGVHSWKAFCK*NLHPARWFSFV Trigger: GACGAAGCTGAACCACCGGGCAGGGTGGAGGTTCCATTTACAAAAGGCCTTCCAGCTGTGAACACCCCTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 72 bp | TCTGATGACTTTGGCCGCTCCCAACTCTCCGGGAGTTaGGGTTTGTTGGTCAATCCATTGGCCACTGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SDDFGRSQLSGS*GLLVNPLATGS Trigger: AGACCCAGTGGCCAATGGATTGACCAACAAACCCCAACTCCCGGAGAGTTGGGAGCGGCCAAAGTCATCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 90 bp | TGGGGACTGCAATTTTCTTTGGAAGAAGTTACTCTGACATCAGCCTaGGATCCCTCTTCCCAGCCCTTCCTGGGAGAGGGTATGCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: WGLQFSLEEVTLTSA*DPSSQPFLGEGMRL Trigger: GAGCCGCATACCCTCTCCCAGGAAGGGCTGGGAAGAGGGATCCAAGGCTGATGTCAGAGTAACTTCTTCCAAAGAAAATTGCAGTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 90 bp | TCTGATGACTTTGGCCGCTCCCAACTCTCCGGGAGTTGGGGTTTGTaGGTCAATCCATTGGCCACTGGGTCTGAATTTATTCTCCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SDDFGRSQLSGSWGL*VNPLATGSEFILLL Trigger: AAGCAGGAGAATAAATTCAGACCCAGTGGCCAATGGATTGACCAACAAACCCCAACTCCCGGAGAGTTGGGAGCGGCCAAAGTCATCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 90 bp | ATGTCTGATGACTTTGGCCGCTCCCAACTCTCCGGGAGTTGGGGTTaGTTGGTCAATCCATTGGCCACTGGGTCTGAATTTATTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: MSDDFGRSQLSGSWG*LVNPLATGSEFILL Trigger: CAGGAGAATAAATTCAGACCCAGTGGCCAATGGATTGACCAACAAACCCCAACTCCCGGAGAGTTGGGAGCGGCCAAAGTCATCAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 90 bp | AGAATTTTCTGGAATAGTCCCAGGCAAGCTTCCTATCTGTGCTTGTaGGTCCAGACTTTTGGCGTTGTCTATGGTGTGCTTGGGCCATGC | + |
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Preference number: 6 (lower is better) Translates to: RIFWNSPRQASYLCL*VQTFGVVYGVLGPC Trigger: GCATGGCCCAAGCACACCATAGACAACGCCAAAAGTCTGGACCAACAAGCACAGATAGGAAGCTTGCCTGGGACTATTCCAGAAAATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 90 bp | TGGAGAATTTTCTGGAATAGTCCCAGGCAAGCTTCCTATCTGTGCTaGTTGGTCCAGACTTTTGGCGTTGTCTATGGTGTGCTTGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: WRIFWNSPRQASYLC*LVQTFGVVYGVLGP Trigger: TGGCCCAAGCACACCATAGACAACGCCAAAAGTCTGGACCAACAAGCACAGATAGGAAGCTTGCCTGGGACTATTCCAGAAAATTCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 72 bp | TTGTCTATGGTGTGCTTGGGCCATGCAGCTTCAGTTTaGGGACTGCAATTTTCTTTGGAAGAAGTTACTCTG | + |
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Preference number: 6 (lower is better) Translates to: LSMVCLGHAASV*GLQFSLEEVTL Trigger: CAGAGTAACTTCTTCCAAAGAAAATTGCAGTCCCCAAACTGAAGCTGCATGGCCCAAGCACACCATAGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 72 bp | GTTGTCTATGGTGTGCTTGGGCCATGCAGCTTCAGTTaGGGGACTGCAATTTTCTTTGGAAGAAGTTACTCT | + |
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Preference number: 6 (lower is better) Translates to: VVYGVLGPCSFS*GTAIFFGRSYS Trigger: AGAGTAACTTCTTCCAAAGAAAATTGCAGTCCCCAAACTGAAGCTGCATGGCCCAAGCACACCATAGACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 90 bp | GTAGTGTCCACCATGACATCATACGACTCTCCATTTCTAAATACTTaGCTCCGGCTCTGTATGATTCCTTGGACAATTAGCTCTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: VVSTMTSYDSPFLNT*LRLCMIPWTISSSR Trigger: CCTGGAAGAGCTAATTGTCCAAGGAATCATACAGAGCCGGAGCAAAGTATTTAGAAATGGAGAGTCGTATGATGTCATGGTGGACACTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS TCA 72 bp | TTGGGGTTTGTTGGTCAATCCATTGGCCACTGGGTCTaGATTTATTCTCCTGCTTGTTTTACTAGGAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: LGFVGQSIGHWV*IYSPACFTRSW Trigger: CCAACTCCTAGTAAAACAAGCAGGAGAATAAATTCAGACCCAGTGGCCAATGGATTGACCAACAAACCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 72 bp | TCTCCTGCTTGTTTTACTAGGAGTTGGAGAATTTTCTaGAATAGTCCCAGGCAAGCTTCCTATCTGTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SPACFTRSWRIF*NSPRQASYLCL Trigger: CAAGCACAGATAGGAAGCTTGCCTGGGACTATTCCAGAAAATTCTCCAACTCCTAGTAAAACAAGCAGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS TCA 72 bp | TCAGAATATGTTGTCCTCTTGGTTGTAATACATGTCTaGCTCCACAAGCTCCAAACCTGTACAGGAGTAGTT | + |
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Preference number: 6 (lower is better) Translates to: SEYVVLLVVIHV*LHKLQTCTGVV Trigger: AACTACTCCTGTACAGGTTTGGAGCTTGTGGAGTCAGACATGTATTACAACCAAGAGGACAACATATTCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CAA 72 bp | ACCATGACATCATACGACTCTCCATTTCTAAATACTTaGCTCCGGCTCTGTATGATTCCTTGGACAATTAGC | + |
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Preference number: 6 (lower is better) Translates to: TMTSYDSPFLNT*LRLCMIPWTIS Trigger: GCTAATTGTCCAAGGAATCATACAGAGCCGGAGCAAAGTATTTAGAAATGGAGAGTCGTATGATGTCATGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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| CDS CCA 72 bp | TTTCTAAATACTTTGCTCCGGCTCTGTATGATTCCTTaGACAATTAGCTCTTCCAGGATGTCTGATGACTTT | + |
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Preference number: 6 (lower is better) Translates to: FLNTLLRLCMIP*TISSSRMSDDF Trigger: AAAGTCATCAGACATCCTGGAAGAGCTAATTGTCCAAGGAATCATACAGAGCCGGAGCAAAGTATTTAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076622.4 |
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