Pregenerated sensors for STMN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027581Ensembl transcript IDs: ENSMUST00000103045.4
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAGGTTGCCAACACATCCACTAAGAGGGCCACTAAGAGAGCCCCAGCCACACCTGGGGACCATATCTCCTaGCTAAGGAGCTCCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: KVANTSTKRATKRAPATPGDHIS*LRSSFR Trigger: CCTGAAGGAGCTCCTTAGGCAGGAGATATGGTCCCC...AGGTGTGGCTGGGGCTCTCTTAGTGGCCCTCTTAGTGGATGTGTTGGCAACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR GCA 90 bp | GCTCCTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCAGCCTCCGCTCCTCAGCTaGCTCCAGCCGCTTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: APSGRAQGQTRYKDWTVQPPLLS*LQPLLQ Trigger: CTGCAGAAGCGGCTGGAGGCAGCTGAGGAGCGGAGG...CTGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAGGAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR GCA 90 bp | AGCTCCTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCACGCACCTCAGCAGCGTaGAGCTCCTTCTCGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSFRKSPRSDTLQGLDSSRTSAA*SSFSRS Trigger: GCTGCGCGAGAAGGAGCTGCACGCTGCTGAGGTGCG...TGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAGGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR CCA 90 bp | AAGGTTGCCAACACATCCACTAAGAGGGCCACTAAGAGAGCCCCAGCCACACCTATGACCTCGAAGCTCTaGCCAGAGGCCCGCTTATCC | + |
|
Preference number: 4 (lower is better) Translates to: KVANTSTKRATKRAPATPMTSKL*PEARLS Trigger: GGATAAGCGGGCCTCTGGCCAGAGCTTCGAGGTCAT...AGGTGTGGCTGGGGCTCTCTTAGTGGCCCTCTTAGTGGATGTGTTGGCAACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR GCA 90 bp | GCTCCTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCAGGCCTCCAGCCGCTTCTaGAGCTCTTCCAAGGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: APSGRAQGQTRYKDWTVQASSRF*SSSKEA Trigger: TGCTTCCTTGGAAGAGCTGCAGAAGCGGCTGGAGGC...CTGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR GCA 90 bp | CTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCAGAGTGTCTTCAAGCGCCTTGTaGAGCACCTCCCGTTCATGC | + |
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Preference number: 4 (lower is better) Translates to: LQEEPKVRHVTRTGQFRVSSSAL*STSRSC Trigger: GCATGAACGGGAGGTGCTGCACAAGGCGCTTGAAGA...CACTCTGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR GCA 90 bp | AGCTCCTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCAGCCCGCTTATCCAGCTaGTTCACTTCCATATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SSFRKSPRSDTLQGLDSSARLSS*FTSISP Trigger: TGGAGATATGGAAGTGAAGCAGCTGGATAAGCGGGC...TGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR CAA 90 bp | CTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCAGAGTGAGGTCAGAAGGAGACTaGAGGATGACCTCGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LQEEPKVRHVTRTGQFRVRSEGD*RMTSKL Trigger: GAGCTTCGAGGTCATCCTCAAGTCTCCTTCTGACCT...CACTCTGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR CAA 90 bp | AGCTCCTTCAGGAAGAGCCCAAGGTCAGACACGTTACAAGGACTGGACAGTTCAGAAGCATCCTTCCTCTaGGGAGGAGAAGAGAGCACA | + |
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Preference number: 5 (lower is better) Translates to: SSFRKSPRSDTLQGLDSSEASFL*GGEEST Trigger: TGTGCTCTCTTCTCCTCCCAAGAGGAAGGATGCTTC...TGAACTGTCCAGTCCTTGTAACGTGTCTGACCTTGGGCTCTTCCTGAAGGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS-3UTR CAA 90 bp | TCCACTAAGAGGGCCACTAAGAGAGCCCCAGCCACACCTGGCCTAGTGTCTGAAAGGCGGCTAAAGTTATaGTTTTCTTCAAGCGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: STKRATKRAPATPGLVSERRLKL*FSSSAL Trigger: CAAGGCGCTTGAAGAAAACAATAACTTTAGCCGCCT...TTCAGACACTAGGCCAGGTGTGGCTGGGGCTCTCTTAGTGGCCCTCTTAGTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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| CDS CCA 72 bp | AGGTCAGAAGGAGACTTGAGGATGACCTCGAAGCTCTaGCCAGAGGCCCGCTTATCCAGCTGCTTCACTTCC | + |
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Preference number: 6 (lower is better) Translates to: RSEGDLRMTSKL*PEARLSSCFTS Trigger: GGAAGTGAAGCAGCTGGATAAGCGGGCCTCTGGCCAGAGCTTCGAGGTCATCCTCAAGTCTCCTTCTGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103045.4 |
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