Pregenerated sensors for STMN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027500Ensembl transcript IDs: ENSMUST00000029002.9
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACAAATGCCCTGCCTGGCCCCTTCACTGCGTCAGCATCACAGATaGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCCCTACACTGG | + |
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Preference number: 1 (lower is better) Translates to: AQMPCLAPSLRQHHR*SGLVLFIGRIALHW Trigger: CCAGTGTAGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGAAGGGGCCAGGCAGGGCATTTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 90 bp | TGCTGGGTGTCTGCTGATTCTTATACTTGGCACAAATGCCCTGCCTaGCCCCTTCACTGCGTCAGCATCACAGATGGAGTGGTTTGGTCT | + |
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Preference number: 1 (lower is better) Translates to: CWVSADSYTWHKCPA*PLHCVSITDGVVWS Trigger: AGACCAAACCACTCCATCTGTGATGCTGACGCAGTGAAGGGGCCAGGCAGGGCATTTGTGCCAAGTATAAGAATCAGCAGACACCCAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR TCA 90 bp | GAAGAACAATCCCATGGCTGCTTGAACCCTCTGGCTTTGCGTTTGTaGTCAGCACGTTGGAAGGTTCAGCCTTTCGCTTCTACCCTGACT | + |
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Preference number: 1 (lower is better) Translates to: EEQSHGCLNPLALRL*SARWKVQPFASTLT Trigger: AGTCAGGGTAGAAGCGAAAGGCTGAACCTTCCAACGTGCTGATCACAAACGCAAAGCCAGAGGGTTCAAGCAGCCATGGGATTGTTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 90 bp | AACTGCAATAGGTACGTATGCTGGGTGTCTGCTGATTCTTATACTTaGCACAAATGCCCTGCCTGGCCCCTTCACTGCGTCAGCATCACA | + |
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Preference number: 1 (lower is better) Translates to: NCNRYVCWVSADSYT*HKCPAWPLHCVSIT Trigger: TGTGATGCTGACGCAGTGAAGGGGCCAGGCAGGGCATTTGTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR TCA 90 bp | GTGATCAGCACGTTGGAAGGTTCAGCCTTTCGCTTCTACCCTGACTaGGCTCAGATTTGTCTTCACATGCACCTGTTTCTAAAACCCAAA | + |
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Preference number: 1 (lower is better) Translates to: VISTLEGSAFRFYPD*AQICLHMHLFLKPK Trigger: TTTGGGTTTTAGAAACAGGTGCATGTGAAGACAAATCTGAGCTCAGTCAGGGTAGAAGCGAAAGGCTGAACCTTCCAACGTGCTGATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 90 bp | GGAGTTAGGGAGAAACAACTTCAAAACTGCAATAGGTACGTATGCTaGGTGTCTGCTGATTCTTATACTTGGCACAAATGCCCTGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: GVREKQLQNCNRYVC*VSADSYTWHKCPAW Trigger: CCAGGCAGGGCATTTGTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTGAAGTTGTTTCTCCCTAACTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR GCA 90 bp | TTGGGAGTTAGGGAGAAACAACTTCAAAACTGCAATAGGTACGTATaGTGGGTGTCTGCTGATTCTTATACTTGGCACAAATGCCCTGCC | + |
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Preference number: 1 (lower is better) Translates to: LGVREKQLQNCNRYV*WVSADSYTWHKCPA Trigger: GGCAGGGCATTTGTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTGAAGTTGTTTCTCCCTAACTCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 90 bp | GCACTGACGAAGAGTAAATATGCAGGCAGTTTGGGAGTTGGGAGTTaGGAGTTAGGGAGAAACAACTTCAAAACTGCAATAGGTACGTAT | + |
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Preference number: 1 (lower is better) Translates to: ALTKSKYAGSLGVGS*ELGRNNFKTAIGTY Trigger: ATACGTACCTATTGCAGTTTTGAAGTTGTTTCTCCCTAACTCCCAACTCCCAACTCCCAAACTGCCTGCATATTTACTCTTCGTCAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR CCA 90 bp | GCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCCCTCAGGGGGATTTACTATaGGAGGGGCTTGCCATACCC | + |
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Preference number: 2 (lower is better) Translates to: ASASQMEWFGLVYRQDCPQGDLL*EGLAIP Trigger: GGGTATGGCAAGCCCCTCCCATAGTAAATCCCCCTG...AGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR TCA 90 bp | CACCCATGGCACCCACAGATAAGCCACCCGACATGTCAATTAATTCATCCCATCCGCTTCTACCCTGACTaGGCTCAGATTTGTCTTCAC | + |
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Preference number: 2 (lower is better) Translates to: HPWHPQISHPTCQLIHPIRFYPD*AQICLH Trigger: GTGAAGACAAATCTGAGCTCAGTCAGGGTAGAAGCG...GATGGGATGAATTAATTGACATGTCGGGTGGCTTATCTGTGGGTGCCATGGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR CCA 90 bp | GCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCCCTATGTGGAGGTTCACATaGACACACAGTACCCACGAT | + |
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Preference number: 2 (lower is better) Translates to: ASASQMEWFGLVYRQDCPMWRFT*THSTHD Trigger: ATCGTGGGTACTGTGTGTCCATGTGAACCTCCACAT...AGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR GCA 90 bp | TCACTGCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGAACAATCCCATGGCTaGTTGAACCCTCTGGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: SLRQHHRWSGLVLFIGRIEQSHG*LNPLAL Trigger: CAAAGCCAGAGGGTTCAAGCAGCCATGGGATTGTTC...AATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR CCA 90 bp | GCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCCCTGTCATTAGGCAATGGTaGGTTTCTAGCACCATAGAC | + |
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Preference number: 2 (lower is better) Translates to: ASASQMEWFGLVYRQDCPVIRQW*VSSTID Trigger: GTCTATGGTGCTAGAAACCCACCATTGCCTAATGAC...AGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAACTGCAATAGGTACGTATGCTGGGTGTCTGCTGATTCTTATACTTGGCACCCTAGCAAATCCATCTaGGTGGAAAGACACAACGTC | + |
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Preference number: 2 (lower is better) Translates to: QNCNRYVCWVSADSYTWHPSKSI*VERHNV Trigger: GACGTTGTGTCTTTCCACTCAGATGGATTTGCTAGG...GTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR TCA 90 bp | TCACTGCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTAATAAGCCCACTTCATaGAGAACAATCCCATGGCTG | + |
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Preference number: 2 (lower is better) Translates to: SLRQHHRWSGLVLFIGRINKPTS*RTIPWL Trigger: CAGCCATGGGATTGTTCTTCATGAAGTGGGCTTATT...AATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR CCA 90 bp | CAAAACTGCAATAGGTACGTATGCTGGGTGTCTGCTGATTCTTATACTTGGCACGCAAATCCATCTGAGTaGAAAGACACAACGTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: QNCNRYVCWVSADSYTWHANPSE*KDTTSK Trigger: TTTTGACGTTGTGTCTTTCCACTCAGATGGATTTGC...GTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR CCA 90 bp | AGTCTCCAAGTGGAAAAACGTTCAGTAGCATTATGTGCTTGTACTACAGGCAAAACCTCATTTTTCGGTTaGAATGAAAAGGGCAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: SLQVEKRSVALCACTTGKTSFFG*NEKGRD Trigger: GTCCCTGCCCTTTTCATTCCAACCGAAAAATGAGGT...TTTGCCTGTAGTACAAGCACATAATGCTACTGAACGTTTTTCCACTTGGAGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAACTGCAATAGGTACGTATGCTGGGTGTCTGCTGATTCTTATACTTGGCACATACACTTCCCATACTaGTATCGCATGATCCATTAT | + |
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Preference number: 2 (lower is better) Translates to: QNCNRYVCWVSADSYTWHIHFPY*YRMIHY Trigger: ATAATGGATCATGCGATATCAGTATGGGAAGTGTAT...GTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR-3UTR GCA 90 bp | TGGGTTTCTAGCACCATAGACTGTCTACTGACCTCATTTTTCGGTTGGAATGAATCAAGCAAAACATTCTaGAAAGAGACCGCATTGATT | + |
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Preference number: 2 (lower is better) Translates to: WVSSTIDCLLTSFFGWNESSKTF*KETALI Trigger: AATCAATGCGGTCTCTTTGCAGAATGTTTTGCTTGA...TTCATTCCAACCGAAAAATGAGGTCAGTAGACAGTCTATGGTGCTAGAAACCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 72 bp | CCCTGCCTGGCCCCTTCACTGCGTCAGCATCACAGATaGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCC | + |
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Preference number: 3 (lower is better) Translates to: PCLAPSLRQHHR*SGLVLFIGRIA Trigger: GGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGAAGGGGCCAGGCAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR TCA 72 bp | TCCCATGGCTGCTTGAACCCTCTGGCTTTGCGTTTGTaGTCAGCACGTTGGAAGGTTCAGCCTTTCGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: SHGCLNPLALRL*SARWKVQPFAS Trigger: AGAAGCGAAAGGCTGAACCTTCCAACGTGCTGATCACAAACGCAAAGCCAGAGGGTTCAAGCAGCCATGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 72 bp | CAGGAAGCAGATTACGAGCAAATGTGGAGGTTCACATaGACACACAGTACCCACGATCTAGGTGTGGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: QEADYEQMWRFT*THSTHDLGVVL Trigger: CAAGACCACACCTAGATCGTGGGTACTGTGTGTCCATGTGAACCTCCACATTTGCTCGTAATCTGCTTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR TCA 72 bp | ACGTTGGAAGGTTCAGCCTTTCGCTTCTACCCTGACTaGGCTCAGATTTGTCTTCACATGCACCTGTTTCTA | + |
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Preference number: 3 (lower is better) Translates to: TLEGSAFRFYPD*AQICLHMHLFL Trigger: TAGAAACAGGTGCATGTGAAGACAAATCTGAGCTCAGTCAGGGTAGAAGCGAAAGGCTGAACCTTCCAACGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR GCA 72 bp | TGGGAGTTGGGAGTTAGGGAGAAACAACTTCAAAACTaGAATAGGTACGTATGCTGGGTGTCTGCTGATTCT | + |
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Preference number: 3 (lower is better) Translates to: WELGVREKQLQN*NRYVCWVSADS Trigger: AGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTGAAGTTGTTTCTCCCTAACTCCCAACTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 72 bp | GCTTCCAAAAGAACAGACCTAGCAAATCCATCTGAGTaGAAAGACACAACGTCAAAAGCCTGTTACAGGACA | + |
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Preference number: 3 (lower is better) Translates to: ASKRTDLANPSE*KDTTSKACYRT Trigger: TGTCCTGTAACAGGCTTTTGACGTTGTGTCTTTCCACTCAGATGGATTTGCTAGGTCTGTTCTTTTGGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CCA 72 bp | AAGAGTAAATATGCAGGCAGTTTGGGAGTTGGGAGTTaGGAGTTAGGGAGAAACAACTTCAAAACTGCAATA | + |
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Preference number: 3 (lower is better) Translates to: KSKYAGSLGVGS*ELGRNNFKTAI Trigger: TATTGCAGTTTTGAAGTTGTTTCTCCCTAACTCCCAACTCCCAACTCCCAAACTGCCTGCATATTTACTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR TCA 90 bp | CACCCATGGCACCCACAGATAAGCCACCCGACATGTCAATTAATTCATCCCATCCAGAGGCCCGCTTGTTaGTCTGCTTCACCTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: HPWHPQISHPTCQLIHPIQRPAC*SASPPC Trigger: ACATGGAGGTGAAGCAGATCAACAAGCGGGCCTCTG...GATGGGATGAATTAATTGACATGTCGGGTGGCTTATCTGTGGGTGCCATGGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | CCCTTCACTGCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGCCCGCTTGTTGATCTaGTTCACCTCCATGTCGTCG | + |
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Preference number: 4 (lower is better) Translates to: PFTASASQMEWFGLVYRQARLLI*FTSMSS Trigger: CGACGACATGGAGGTGAAGCAGATCAACAAGCGGGC...CTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGAAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | GCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCCCTGCAGTTCCTTGTTCCTaGGAACCTCTGCAGCATGCC | + |
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Preference number: 4 (lower is better) Translates to: ASASQMEWFGLVYRQDCPAVPCS*EPLQHA Trigger: GGCATGCTGCAGAGGTTCGCAGGAACAAGGAACTGC...AGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR TCA 90 bp | CACCCATGGCACCCACAGATAAGCCACCCGACATGTCAATTAATTCATCCCATCAGTTCGTGGAGCTTCTaGGATGGGAGATGGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: HPWHPQISHPTCQLIHPISSWSF*DGRWWL Trigger: AAGCCACCATCTCCCATCTCAGAAGCTCCACGAACT...GATGGGATGAATTAATTGACATGTCGGGTGGCTTATCTGTGGGTGCCATGGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | GCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTGCCCTCCAGACAGTTCAACCTaGAGTTCCTTGTTCCTGCGA | + |
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Preference number: 4 (lower is better) Translates to: ASASQMEWFGLVYRQDCPPDSST*SSLFLR Trigger: TCGCAGGAACAAGGAACTGCAGGTTGAACTGTCTGG...AGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| 3UTR CAA 72 bp | TCACTGCGTCAGCATCACAGATGGAGTGGTTTGGTCTaGTTTATAGGCAGGATTGCCCTACACTGGGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SLRQHHRWSGLV*FIGRIALHWGR Trigger: TCTTCCCCAGTGTAGGGCAATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR TCA 90 bp | CAATGGTGGGTTTCTAGCACCATAGACTGTCTACTGACCTCATTTTTCGGTTGGCCTCCGCCATCTTGCTaGAGTTGTTGTTCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QWWVSSTIDCLLTSFFGWPPPSC*SCCSPP Trigger: TGGAGGAGAACAACAACTTCAGCAAGATGGCGGAGG...CCAACCGAAAAATGAGGTCAGTAGACAGTCTATGGTGCTAGAAACCCACCATTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | CAATGGTGGGTTTCTAGCACCATAGACTGTCTACTGACCTCATTTTTCGGTTGGGTTCCTGCGAACCTCTaGAGCATGCCTCTCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QWWVSSTIDCLLTSFFGWVPANL*SMPLLF Trigger: GAAAAGGAGAGGCATGCTGCAGAGGTTCGCAGGAAC...CCAACCGAAAAATGAGGTCAGTAGACAGTCTATGGTGCTAGAAACCCACCATTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | CAATGGTGGGTTTCTAGCACCATAGACTGTCTACTGACCTCATTTTTCGGTTGGCTTTCTTCGCTCCTCTaGAGCCTCCAGCTTTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: QWWVSSTIDCLLTSFFGWLSSLL*SLQLFL Trigger: CAGAAAAAGCTGGAGGCTGCAGAGGAGCGAAGAAAG...CCAACCGAAAAATGAGGTCAGTAGACAGTCTATGGTGCTAGAAACCCACCATTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | AGTCTCCAAGTGGAAAAACGTTCAGTAGCATTATGTGCTTGTACTACAGGCAAAAGCACCTCTCGCTCGTaGTCCCTCTTCTCTGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: SLQVEKRSVALCACTTGKSTSRS*SLFSAN Trigger: GTTGGCAGAGAAGAGGGAGCACGAGCGAGAGGTGCT...TTTGCCTGTAGTACAAGCACATAATGCTACTGAACGTTTTTCCACTTGGAGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | CAAAACTGCAATAGGTACGTATGCTGGGTGTCTGCTGATTCTTATACTTGGCACCGAACCTCTGCAGCATaGCTCTCCTTTTCCTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QNCNRYVCWVSADSYTWHRTSAA*LSFSCR Trigger: TCTGCAGGAAAAGGAGAGGCATGCTGCAGAGGTTCG...GTGCCAAGTATAAGAATCAGCAGACACCCAGCATACGTACCTATTGCAGTTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR CCA 90 bp | CAATGGTGGGTTTCTAGCACCATAGACTGTCTACTGACCTCATTTTTCGGTTGGGTGGAGCTTCTGAGATaGGAGATGGTGGCTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: QWWVSSTIDCLLTSFFGWVELLR*EMVASR Trigger: TCTTGAAGCCACCATCTCCCATCTCAGAAGCTCCAC...CCAACCGAAAAATGAGGTCAGTAGACAGTCTATGGTGCTAGAAACCCACCATTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR TCA 90 bp | AGTCTCCAAGTGGAAAAACGTTCAGTAGCATTATGTGCTTGTACTACAGGCAAAGCCTCCAGCTTTTTCTaGATCTCCTCCAGAGACAGG | + |
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Preference number: 4 (lower is better) Translates to: SLQVEKRSVALCACTTGKASSFF*ISSRDR Trigger: CCTGTCTCTGGAGGAGATTCAGAAAAAGCTGGAGGC...TTTGCCTGTAGTACAAGCACATAATGCTACTGAACGTTTTTCCACTTGGAGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR GCA 90 bp | TCACTGCGTCAGCATCACAGATGGAGTGGTTTGGTCTTGTTTATAGGCAGGATTTGCCTCTCCTTTTCCTaGAGACGTTCAATGATAGCA | + |
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Preference number: 4 (lower is better) Translates to: SLRQHHRWSGLVLFIGRICLSFS*RRSMIA Trigger: TGCTATCATTGAACGTCTGCAGGAAAAGGAGAGGCA...AATCCTGCCTATAAACAAGACCAAACCACTCCATCTGTGATGCTGACGCAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS-3UTR CAA 90 bp | CAATGGTGGGTTTCTAGCACCATAGACTGTCTACTGACCTCATTTTTCGGTTGGCCAGAGGCCCGCTTGTaGATCTGCTTCACCTCCATG | + |
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Preference number: 5 (lower is better) Translates to: QWWVSSTIDCLLTSFFGWPEARL*ICFTSM Trigger: CATGGAGGTGAAGCAGATCAACAAGCGGGCCTCTGG...CCAACCGAAAAATGAGGTCAGTAGACAGTCTATGGTGCTAGAAACCCACCATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS TCA 72 bp | TCTGCTTCACCTCCATGTCGTCGTAGGTGTAGATGTTaGTGTTGCGCGGCTCCGGGTAGAAGCAGGAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SASPPCRRRCRC*CCAAPGRSRSR Trigger: TCTGCTCCTGCTTCTACCCGGAGCCGCGCAACATCAACATCTACACCTACGACGACATGGAGGTGAAGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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| CDS CCA 72 bp | TCTTTGGAGAAGCTAGAGTTCGTGGAGCTTCTGAGATaGGAGATGGTGGCTTCAAGATCAGCTCAAAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: SLEKLEFVELLR*EMVASRSAQKP Trigger: AGGCTTTTGAGCTGATCTTGAAGCCACCATCTCCCATCTCAGAAGCTCCACGAACTCTAGCTTCTCCAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029002.9 |
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