Pregenerated sensors for STMN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028832Ensembl transcript IDs: ENSMUST00000030636.11, ENSMUST00000105867.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCAGGAGGCCAGTACAGTCTTTaGATATTTAGGACGGGGTCG | + |
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Preference number: 2 (lower is better) Translates to: RSGSTYTVLHRLLDYLSGGQYSL*IFRTGS Trigger: CGACCCCGTCCTAAATATCCAAAGACTGTACTGGCC...TCCTGACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| 3UTR-3UTR CCA 90 bp | AACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATGGCCAGTACAGTCTTTaGATATTTAGGACGGGGTCG | + |
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Preference number: 2 (lower is better) Translates to: NISRSGSTYTVLHRLLDYGQYSL*IFRTGS Trigger: CGACCCCGTCCTAAATATCCAAAGACTGTACTGGCC...ATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| 3UTR-3UTR CCA 90 bp | CTTGAGCCCCTAAAACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGGAAAGTAAAGGACACTaGCCAGTACAGTCTTTGGAT | + |
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Preference number: 2 (lower is better) Translates to: LEPLKHLTVWIYLYGPTSESKGH*PVQSLD Trigger: ATCCAAAGACTGTACTGGCCAGTGTCCTTTACTTTC...CGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTTTTAGGGGCTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| 3UTR-3UTR GCA 90 bp | GGAAGAAGCCGCCACATACTCTTCACAAACATCTTCCACAGTCAATACAGAACTCCCGAGTGGAAAAGATaGAACGAGAAAAATAGCTAC | + |
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Preference number: 2 (lower is better) Translates to: GRSRHILFTNIFHSQYRTPEWKR*NEKNSY Trigger: GTAGCTATTTTTCTCGTTGCATCTTTTCCACTCGGG...AGTTCTGTATTGACTGTGGAAGATGTTTGTGAAGAGTATGTGGCGGCTTCTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030636.11 |
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| CDS-3UTR CCA 90 bp | TGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCAGGAGGGAAGCAAGCGCTCCAGCTTaGCCGCCATCTGCGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: WIYLYGPTSASRLSVRREASAPA*PPSAPP Trigger: GGGAGGCGCAGATGGCGGCCAAGCTGGAGCGCTTGC...TTCCCTCCTGACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR CCA 90 bp | AAACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTAGCAAGCGCTCCAGCTTaGCCGCCATCTGCGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: KHLTVWIYLYGPTSASRLASAPA*PPSAPP Trigger: GGGAGGCGCAGATGGCGGCCAAGCTGGAGCGCTTGC...TAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR GCA 90 bp | TCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCAAGCTTGGCCGCCATCTaGGCCTCCCGGTTCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: SRSGSTYTVLHRLLDYLSSLAAI*ASRFSL Trigger: CAAAGAGAACCGGGAGGCGCAGATGGCGGCCAAGCT...TGACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR TCA 90 bp | CTTGAGCCCCTAAAACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGCCTCCGCCATCTTGCTaGAGTTGTTGTTCTCCTCGA | + |
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Preference number: 4 (lower is better) Translates to: LEPLKHLTVWIYLYGPTSPPPSC*SCCSPR Trigger: TCGAGGAGAACAACAACTTCAGCAAGATGGCGGAGG...CGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTTTTAGGGGCTCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR GCA 90 bp | CTTGAGCCCCTAAAACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGCCGCCTCATGAGACTTaGGTCTTTCTTCTGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LEPLKHLTVWIYLYGPTSPPHET*VFLLQL Trigger: AAGCTGCAGAAGAAAGACGCAAGTCTCATGAGGCGG...CGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTTTTAGGGGCTCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR CCA 90 bp | CTCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCTGTTGTTCTCCTCGATaGCTTTCTGGAGCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LTVWIYLYGPTSASRLSVCCSPR*LSGAPP Trigger: AGGAGGTGCTCCAGAAAGCCATCGAGGAGAACAACA...GACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR TCA 90 bp | ATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGCTTTTGACCGAGGGCTaGGAATCAGCTCAAAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: ISRSGSTYTVLHRLLDYLLLTEG*ESAQKP Trigger: AGGCTTTTGAGCTGATTCTCAGCCCTCGGTCAAAAG...CAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR TCA 90 bp | AAACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTACCTCCGCCATCTTGCTaGAGTTGTTGTTCTCCTCGA | + |
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Preference number: 4 (lower is better) Translates to: KHLTVWIYLYGPTSASRLPPPSC*SCCSPR Trigger: TCGAGGAGAACAACAACTTCAGCAAGATGGCGGAGG...TAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR TCA 90 bp | TCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCAGGAGGGAAAGTACTTTTGACCGAGGGCTaGGAATCAGCTCAAAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: STYTVLHRLLDYLSGGKVLLTEG*ESAQKP Trigger: AGGCTTTTGAGCTGATTCTCAGCCCTCGGTCAAAAG...TACTTTCCCTCCTGACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR GCA 90 bp | TGGGTTGGAAGAAGCCGCCACATACTCTTCACAAACATCTTCCACAGTCAATACCCGCCTCATGAGACTTaGGTCTTTCTTCTGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: WVGRSRHILFTNIFHSQYPPHET*VFLLQL Trigger: AAGCTGCAGAAGAAAGACGCAAGTCTCATGAGGCGG...GTATTGACTGTGGAAGATGTTTGTGAAGAGTATGTGGCGGCTTCTTCCAACCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030636.11 |
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| CDS-3UTR CCA 90 bp | TCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCAGGAGGGAAAGTATGTTGTTCTCCTCGATaGCTTTCTGGAGCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: STYTVLHRLLDYLSGGKVCCSPR*LSGAPP Trigger: AGGAGGTGCTCCAGAAAGCCATCGAGGAGAACAACA...TACTTTCCCTCCTGACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR CCA 90 bp | TGGGTTGGAAGAAGCCGCCACATACTCTTCACAAACATCTTCCACAGTCAATACCATCCGCGGGGTCTTTaGATTCTTTGTTCTTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: WVGRSRHILFTNIFHSQYHPRGL*ILCSSA Trigger: TGCGGAAGAACAAAGAATCCAAAGACCCCGCGGATG...GTATTGACTGTGGAAGATGTTTGTGAAGAGTATGTGGCGGCTTCTTCCAACCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030636.11 |
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| CDS-3UTR CAA 90 bp | GATCGCAAAGTGGACAGATATTCAGCATCTAATGGGTTGGAAGAAGCCGCCACAGGGTCTTTGGATTCTTaGTTCTTCCGCACCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: DRKVDRYSASNGLEEAATGSLDS*FFRTSS Trigger: GGAAGAGGTGCGGAAGAACAAAGAATCCAAAGACCC...TGTGGCGGCTTCTTCCAACCCATTAGATGCTGAATATCTGTCCACTTTGCGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030636.11 |
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| CDS-3UTR CAA 90 bp | AAACATCTCACGGTCTGGATCTACCTATACGGTCCTACATCGGCTTCTAGACTATTGTTAGCCTCCATTTaGTGGGTCAGCTTCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: KHLTVWIYLYGPTSASRLLLASI*WVSFSS Trigger: GGAGGAGAAGCTGACCCACAAAATGGAGGCTAACAA...TAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCCAGACCGTGAGATGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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| CDS-3UTR CAA 90 bp | GGAAGAAGCCGCCACATACTCTTCACAAACATCTTCCACAGTCAATACAGAACTTTGTTAGCCTCCATTTaGTGGGTCAGCTTCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: GRSRHILFTNIFHSQYRTLLASI*WVSFSS Trigger: GGAGGAGAAGCTGACCCACAAAATGGAGGCTAACAA...AGTTCTGTATTGACTGTGGAAGATGTTTGTGAAGAGTATGTGGCGGCTTCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030636.11 |
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| CDS-3UTR CAA 90 bp | TGGGTTGGAAGAAGCCGCCACATACTCTTCACAAACATCTTCCACAGTCAATACATCTTGCTGAAGTTGTaGTTCTCCTCGATGGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: WVGRSRHILFTNIFHSQYILLKL*FSSMAF Trigger: GAAAGCCATCGAGGAGAACAACAACTTCAGCAAGAT...GTATTGACTGTGGAAGATGTTTGTGAAGAGTATGTGGCGGCTTCTTCCAACCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030636.11 |
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| CDS-3UTR CAA 90 bp | TCTACCTATACGGTCCTACATCGGCTTCTAGACTATCTGTCAGGAGGGAAAGTAATCTTGCTGAAGTTGTaGTTCTCCTCGATGGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: STYTVLHRLLDYLSGGKVILLKL*FSSMAF Trigger: GAAAGCCATCGAGGAGAACAACAACTTCAGCAAGAT...TACTTTCCCTCCTGACAGATAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030636.11 ENSMUST00000105867.8 |
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