Pregenerated sensors for STK17B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026094Ensembl transcript IDs: ENSMUST00000027263.14, ENSMUST00000185920.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGAAATGATGTCGAGTTTTGACTCGGTTTGCAGAGAAACAGCCTaGATCAACCCTGCTCTGGTTGACTGTGTCCTCTCACCGAGCACA | + |
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Preference number: 1 (lower is better) Translates to: LEMMSSFDSVCRETA*INPALVDCVLSPST Trigger: TGTGCTCGGTGAGAGGACACAGTCAACCAGAGCAGGGTTGATCCAGGCTGTTTCTCTGCAAACCGAGTCAAAACTCGACATCATTTCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CCA 90 bp | GTTTTGACTCGGTTTGCAGAGAAACAGCCTGGATCAACCCTGCTCTaGTTGACTGTGTCCTCTCACCGAGCACATGGCACACAAAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: VLTRFAEKQPGSTLL*LTVSSHRAHGTQRK Trigger: TTTTCTTTGTGTGCCATGTGCTCGGTGAGAGGACACAGTCAACCAGAGCAGGGTTGATCCAGGCTGTTTCTCTGCAAACCGAGTCAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CCA 90 bp | TGGATCAACCCTGCTCTGGTTGACTGTGTCCTCTCACCGAGCACATaGCACACAAAGAAAATCTTACAGTTTCAAGCTATTATTGGTAAC | + |
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Preference number: 1 (lower is better) Translates to: WINPALVDCVLSPST*HTKKILQFQAIIGN Trigger: GTTACCAATAATAGCTTGAAACTGTAAGATTTTCTTTGTGTGCCATGTGCTCGGTGAGAGGACACAGTCAACCAGAGCAGGGTTGATCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR TCA 90 bp | CTAAGTCAGCTGCCAGAACTTAACATTTCCCTTTATGAATATGTCTaGCTGAAACTAGAGCATATTCTGTACTATCCAATTCTCCTCTAC | + |
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Preference number: 1 (lower is better) Translates to: LSQLPELNISLYEYV*LKLEHILYYPILLY Trigger: GTAGAGGAGAATTGGATAGTACAGAATATGCTCTAGTTTCAGTCAGACATATTCATAAAGGGAAATGTTAAGTTCTGGCAGCTGACTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR TCA 90 bp | TATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTTGAACATAATACACAAGGAACAACCCTGCTCTGGTTaGCTGTGTCCTCTCACCGAG | + |
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Preference number: 2 (lower is better) Translates to: YSDKRALLAPELNIIHKEQPCSG*LCPLTE Trigger: CTCGGTGAGAGGACACAGTCAACCAGAGCAGGGTTG...TTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR GCA 90 bp | GAACACTCCCATGTGTTGTGTCCAGCAGAACACACACAAAAGGAGCCCAAAGATCAAGAATTCCTGAAGTaGCTATGCTCTAATGATGGG | + |
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Preference number: 2 (lower is better) Translates to: EHSHVLCPAEHTQKEPKDQEFLK*LCSNDG Trigger: CCCATCATTAGAGCATAGGCACTTCAGGAATTCTTG...ATCTTTGGGCTCCTTTTGTGTGTGTTCTGCTGGACACAACACATGGGAGTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CCA 90 bp | GAACACTCCCATGTGTTGTGTCCAGCAGAACACACACAAAAGGAGCCCAAAGATAAGCAGTATATGTTGTaGTTTACCCTTGACAGCATT | + |
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Preference number: 2 (lower is better) Translates to: EHSHVLCPAEHTQKEPKDKQYML*FTLDSI Trigger: AATGCTGTCAAGGGTAAACCACAACATATACTGCTT...ATCTTTGGGCTCCTTTTGTGTGTGTTCTGCTGGACACAACACATGGGAGTGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CCA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACGGATCAACCCTGCTCTaGTTGACTGTGTCCTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYGSTLL*LTVSSH Trigger: GTGAGAGGACACAGTCAACCAGAGCAGGGTTGATCC...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CCA 90 bp | TCTAATCATTCTAGAAGACAAAGGCCTCTTATTTGCATATCCATCTTCCAGATCTGCAGAGAAACAGCCTaGATCAACCCTGCTCTGGTT | + |
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Preference number: 2 (lower is better) Translates to: SNHSRRQRPLICISIFQICRETA*INPALV Trigger: AACCAGAGCAGGGTTGATCCAGGCTGTTTCTCTGCA...GATCTGGAAGATGGATATGCAAATAAGAGGCCTTTGTCTTCTAGAATGATTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR TCA 90 bp | TCTAATCATTCTAGAAGACAAAGGCCTCTTATTTGCATATCCATCTTCCAGATCGTTGTGGTTTACCCTTaGCAGCATTTCCCCAAACAG | + |
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Preference number: 2 (lower is better) Translates to: SNHSRRQRPLICISIFQIVVVYP*QHFPKQ Trigger: CTGTTTGGGGAAATGCTGTCAAGGGTAAACCACAAC...GATCTGGAAGATGGATATGCAAATAAGAGGCCTTTGTCTTCTAGAATGATTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR TCA 90 bp | GTTTGGCTTCTTGGACCAACAGACTACTTCTTAAAGAATGTATGGGCATACTTATACATGAGCTGGAAATaGTGTCGAGTTTTGACTCGG | + |
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Preference number: 2 (lower is better) Translates to: VWLLGPTDYFLKNVWAYLYMSWK*CRVLTR Trigger: CCGAGTCAAAACTCGACATCATTTCCAGCTCATGTA...TAAGTATGCCCATACATTCTTTAAGAAGTAGTCTGTTGGTCCAAGAAGCCAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR GCA 90 bp | TATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTTGAACATAATACACAAGGAAAGTTTTGACTCGGTTTaGAGAGAAACAGCCTGGATC | + |
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Preference number: 2 (lower is better) Translates to: YSDKRALLAPELNIIHKESFDSV*RETAWI Trigger: GATCCAGGCTGTTTCTCTGCAAACCGAGTCAAAACT...TTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR GCA 90 bp | GTTTGGCTTCTTGGACCAACAGACTACTTCTTAAAGAATGTATGGGCATACTTATTCCTGAAGTGCCTATaGTCTAATGATGGGCTTCTA | + |
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Preference number: 2 (lower is better) Translates to: VWLLGPTDYFLKNVWAYLFLKCL*SNDGLL Trigger: TAGAAGCCCATCATTAGAGCATAGGCACTTCAGGAA...TAAGTATGCCCATACATTCTTTAAGAAGTAGTCTGTTGGTCCAAGAAGCCAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR TCA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACCACGTACAAAATACATaGGCTGGAAATGATGTCGAG | + |
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Preference number: 2 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYHVQNT*AGNDVE Trigger: CTCGACATCATTTCCAGCTCATGTATTTTGTACGTG...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CCA 90 bp | GTTTGGCTTCTTGGACCAACAGACTACTTCTTAAAGAATGTATGGGCATACTTATTACAGACCTTAAAATaGACACCAGTGGGAAATCTC | + |
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Preference number: 2 (lower is better) Translates to: VWLLGPTDYFLKNVWAYLLQTLK*TPVGNL Trigger: GAGATTTCCCACTGGTGTCCATTTTAAGGTCTGTAA...TAAGTATGCCCATACATTCTTTAAGAAGTAGTCTGTTGGTCCAAGAAGCCAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR GCA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACCAAAGGCCTCTTATTTaGATATCCATCTTCCAGATC | + |
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Preference number: 2 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYQRPLI*ISIFQI Trigger: GATCTGGAAGATGGATATGCAAATAAGAGGCCTTTG...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CCA 90 bp | GTTTGGCTTCTTGGACCAACAGACTACTTCTTAAAGAATGTATGGGCATACTTAGCTTTTAATTTGTTTTaGCAACGGAGTCTGATAGAG | + |
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Preference number: 2 (lower is better) Translates to: VWLLGPTDYFLKNVWAYLAFNLF*QRSLIE Trigger: CTCTATCAGACTCCGTTGCCAAAACAAATTAAAAGC...TAAGTATGCCCATACATTCTTTAAGAAGTAGTCTGTTGGTCCAAGAAGCCAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CAA 90 bp | GGGCATACTTATTATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTaGAACATAATACACAAGGAAAGAATATCTAACATGAAGTTGTTT | + |
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Preference number: 2 (lower is better) Translates to: GHTYYSDKRALLAPE*NIIHKERISNMKLF Trigger: AAACAACTTCATGTTAGATATTCTTTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATAATAAGTATGCCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CCA 72 bp | CGGTTTGCAGAGAAACAGCCTGGATCAACCCTGCTCTaGTTGACTGTGTCCTCTCACCGAGCACATGGCACA | + |
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Preference number: 3 (lower is better) Translates to: RFAEKQPGSTLL*LTVSSHRAHGT Trigger: TGTGCCATGTGCTCGGTGAGAGGACACAGTCAACCAGAGCAGGGTTGATCCAGGCTGTTTCTCTGCAAACCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR TCA 72 bp | TTGCAGAGAAACAGCCTGGATCAACCCTGCTCTGGTTaGCTGTGTCCTCTCACCGAGCACATGGCACACAAA | + |
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Preference number: 3 (lower is better) Translates to: LQRNSLDQPCSG*LCPLTEHMAHK Trigger: TTTGTGTGCCATGTGCTCGGTGAGAGGACACAGTCAACCAGAGCAGGGTTGATCCAGGCTGTTTCTCTGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR GCA 72 bp | CATGAGCTGGAAATGATGTCGAGTTTTGACTCGGTTTaGAGAGAAACAGCCTGGATCAACCCTGCTCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: HELEMMSSFDSV*RETAWINPALV Trigger: AACCAGAGCAGGGTTGATCCAGGCTGTTTCTCTGCAAACCGAGTCAAAACTCGACATCATTTCCAGCTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR TCA 72 bp | ACCTCCTCACTCACTAGAATTTCACACAAGAATTCCTaGAGTGCCTATGCTCTAATGATGGGCTTCTATCCT | + |
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Preference number: 3 (lower is better) Translates to: TSSLTRISHKNS*SAYALMMGFYP Trigger: AGGATAGAAGCCCATCATTAGAGCATAGGCACTTCAGGAATTCTTGTGTGAAATTCTAGTGAGTGAGGAGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CAA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACGAACACTCCCATGTGTaGTGTCCAGCAGAACACACA | + |
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Preference number: 3 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYEHSHV*CPAEHT Trigger: TGTGTGTTCTGCTGGACACAACACATGGGAGTGTTC...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CCA 72 bp | ACTCTCTCTGGAGTATTTATAAAGCAGTATATGTTGTaGTTTACCCTTGACAGCATTTCCCCAAACAGATTC | + |
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Preference number: 3 (lower is better) Translates to: TLSGVFIKQYML*FTLDSISPNRF Trigger: GAATCTGTTTGGGGAAATGCTGTCAAGGGTAAACCACAACATATACTGCTTTATAAATACTCCAGAGAGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR-3UTR CAA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACACAAAGGCCTCTTATTaGCATATCCATCTTCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYTKASY*HIHLPD Trigger: ATCTGGAAGATGGATATGCAAATAAGAGGCCTTTGT...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR TCA 72 bp | AGTATTTATAAAGCAGTATATGTTGTGGTTTACCCTTaGCAGCATTTCCCCAAACAGATTCTCTGTAATAGA | + |
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Preference number: 3 (lower is better) Translates to: SIYKAVYVVVYP*QHFPKQILCNR Trigger: TCTATTACAGAGAATCTGTTTGGGGAAATGCTGTCAAGGGTAAACCACAACATATACTGCTTTATAAATACT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR TCA 72 bp | CTGCCAGAACTTAACATTTCCCTTTATGAATATGTCTaGCTGAAACTAGAGCATATTCTGTACTATCCAATT | + |
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Preference number: 3 (lower is better) Translates to: LPELNISLYEYV*LKLEHILYYPI Trigger: AATTGGATAGTACAGAATATGCTCTAGTTTCAGTCAGACATATTCATAAAGGGAAATGTTAAGTTCTGGCAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CCA 72 bp | ACTCTCTCAGAAGACATTTATTGCCACACTTCAACATaGGAAATTTGTAAATTTGCTTTTATGGAAAGACTG | + |
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Preference number: 3 (lower is better) Translates to: TLSEDIYCHTST*EICKFAFMERL Trigger: CAGTCTTTCCATAAAAGCAAATTTACAAATTTCCCATGTTGAAGTGTGGCAATAAATGTCTTCTGAGAGAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | AAAAGGAGCCCAAAGATAGCTGCATGTCACACCTCCTCACTCACTAGAATTTCACGTGGGGACAAGACCTaGCCAGCTCCAGCACAGCTA | + |
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Preference number: 4 (lower is better) Translates to: KRSPKIAACHTSSLTRISRGDKT*PAPAQL Trigger: TAGCTGTGCTGGAGCTGGCCAGGTCTTGTCCCCACG...TGAAATTCTAGTGAGTGAGGAGGTGTGACATGCAGCTATCTTTGGGCTCCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR GCA 90 bp | AAAAGGAGCCCAAAGATAGCTGCATGTCACACCTCCTCACTCACTAGAATTTCACCAAAGTCCCACTGCTaGAGCCATGAGTGGGATAGG | + |
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Preference number: 4 (lower is better) Translates to: KRSPKIAACHTSSLTRISPKSHC*SHEWDR Trigger: CCTATCCCACTCATGGCTGCAGCAGTGGGACTTTGG...TGAAATTCTAGTGAGTGAGGAGGTGTGACATGCAGCTATCTTTGGGCTCCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR TCA 90 bp | GAACACTCCCATGTGTTGTGTCCAGCAGAACACACACAAAAGGAGCCCAAAGATATTCAGGTGTTCCCATaGTTTCCCGAAGCTCACTTG | + |
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Preference number: 4 (lower is better) Translates to: EHSHVLCPAEHTQKEPKDIQVFP*FPEAHL Trigger: CAAGTGAGCTTCGGGAAATCATGGGAACACCTGAAT...ATCTTTGGGCTCCTTTTGTGTGTGTTCTGCTGGACACAACACATGGGAGTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR GCA 90 bp | GAAGCTACAAACACAATCTCACACCAGAGATTTCAAATTTCCGAGTCAGTCCAGTCCGCCCGGCAATCCTaGCCTCTTCTCCTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: EATNTISHQRFQISESVQSARQS*PLLLFF Trigger: GAAAAAGAGGAGAAGAGGGCAGGATTGCCGGGCGGA...CTGGACTGACTCGGAAATTTGAAATCTCTGGTGTGAGATTGTGTTTGTAGCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | GAAGCTACAAACACAATCTCACACCAGAGATTTCAAATTTCCGAGTCAGTCCAGTGCTGCAGCCATGAGTaGGATAGGCAGGATTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: EATNTISHQRFQISESVQCCSHE*DRQDSA Trigger: AGCAGAATCCTGCCTATCCCACTCATGGCTGCAGCA...CTGGACTGACTCGGAAATTTGAAATCTCTGGTGTGAGATTGTGTTTGTAGCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CAA 72 bp | ATATTGACCACGGACAACACTGAACACTCCCATGTGTaGTGTCCAGCAGAACACACACAAAAGGAGCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: ILTTDNTEHSHV*CPAEHTQKEPK Trigger: TTTGGGCTCCTTTTGTGTGTGTTCTGCTGGACACAACACATGGGAGTGTTCAGTGTTGTCCGTGGTCAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | AAAAGGAGCCCAAAGATAGCTGCATGTCACACCTCCTCACTCACTAGAATTTCACATTACAGGAGGACTTaGAGGTCTTCTCTTCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: KRSPKIAACHTSSLTRISHYRRT*RSSLQR Trigger: CCTCTGAAGAGAAGACCTCCAAGTCCTCCTGTAATG...TGAAATTCTAGTGAGTGAGGAGGTGTGACATGCAGCTATCTTTGGGCTCCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR GCA 90 bp | GTTTGGCTTCTTGGACCAACAGACTACTTCTTAAAGAATGTATGGGCATACTTACTTCCAAAGTCCCACTaGTGCAGCCATGAGTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: VWLLGPTDYFLKNVWAYLLPKSH*CSHEWD Trigger: ATCCCACTCATGGCTGCAGCAGTGGGACTTTGGAAG...TAAGTATGCCCATACATTCTTTAAGAAGTAGTCTGTTGGTCCAAGAAGCCAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | TATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTTGAACATAATACACAAGGAACAAGTTCATGGGGGCTaGGCAAGGAGTCATCGAATC | + |
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Preference number: 4 (lower is better) Translates to: YSDKRALLAPELNIIHKEQVHGG*ARSHRI Trigger: GATTCGATGACTCCTTGCCCAGCCCCCATGAACTTG...TTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR TCA 90 bp | AAAAGGAGCCCAAAGATAGCTGCATGTCACACCTCCTCACTCACTAGAATTTCAAATTTGAGAGGAGCCTaGAGTTTCCTCAGGATGAAA | + |
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Preference number: 4 (lower is better) Translates to: KRSPKIAACHTSSLTRISNLRGA*SFLRMK Trigger: TTTCATCCTGAGGAAACTTCAGGCTCCTCTCAAATT...TGAAATTCTAGTGAGTGAGGAGGTGTGACATGCAGCTATCTTTGGGCTCCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | TCTAATCATTCTAGAAGACAAAGGCCTCTTATTTGCATATCCATCTTCCAGATCTCTGGAACAAGTTCATaGGGGCTGGGCAAGGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: SNHSRRQRPLICISIFQISGTSS*GLGKES Trigger: TGACTCCTTGCCCAGCCCCCATGAACTTGTTCCAGA...GATCTGGAAGATGGATATGCAAATAAGAGGCCTTTGTCTTCTAGAATGATTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR GCA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACAGCACAGCTATCTCATaGAGAATTTCCGCCCGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYSTAIS*RISARQ Trigger: TTGCCGGGCGGAAATTCTGCATGAGATAGCTGTGCT...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | GAAGCTACAAACACAATCTCACACCAGAGATTTCAAATTTCCGAGTCAGTCCAGCTAACAGAACAAATCTaGAACAAGTTCATGGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: EATNTISHQRFQISESVQLTEQI*NKFMGA Trigger: AGCCCCCATGAACTTGTTCCAGATTTGTTCTGTTAG...CTGGACTGACTCGGAAATTTGAAATCTCTGGTGTGAGATTGTGTTTGTAGCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR TCA 90 bp | TATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTTGAACATAATACACAAGGAAGAAGTTTCCTCAGGATaGAACAAGCTTCCAAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: YSDKRALLAPELNIIHKEEVSSG*NKLPKS Trigger: GGACTTTGGAAGCTTGTTTCATCCTGAGGAAACTTC...TTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR GCA 90 bp | AAAAGGAGCCCAAAGATAGCTGCATGTCACACCTCCTCACTCACTAGAATTTCACAAAATGATTTCCGTTaGATTTTCGTAGACCTCATG | + |
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Preference number: 4 (lower is better) Translates to: KRSPKIAACHTSSLTRISQNDFR*IFVDLM Trigger: CATGAGGTCTACGAAAATGCAACGGAAATCATTTTG...TGAAATTCTAGTGAGTGAGGAGGTGTGACATGCAGCTATCTTTGGGCTCCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | AGCATTTCCCCAAACAGATTCTCTGTAATAGAGTTATGGTATAGGGCTTACCTTTCTTTTTCAGGGATTTaGCAGCATACTCTTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SISPNRFSVIELWYRAYLSFSGI*QHTLVQ Trigger: CTGGACAAGAGTATGCTGCCAAATCCCTGAAAAAGA...AAGGTAAGCCCTATACCATAACTCTATTACAGAGAATCTGTTTGGGGAAATGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | ACAAGAGTTAAATTTAGCATCTTTAGTGTTTGGCTTCTTGGACCAACAGACTACGCAGGATTCTGCTGTTaGTCTTTTCTCTGGGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TRVKFSIFSVWLLGPTDYAGFCC*SFLWVL Trigger: AAGAACCCAGAGAAAAGACCAACAGCAGAATCCTGC...GTAGTCTGTTGGTCCAAGAAGCCAAACACTAAAGATGCTAAATTTAACTCTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR GCA 90 bp | TATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTTGAACATAATACACAAGGAAATTCCACATATCTGTTaGTGTGGTAATGGGATCATA | + |
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Preference number: 4 (lower is better) Translates to: YSDKRALLAPELNIIHKEIPHIC*CGNGII Trigger: TATGATCCCATTACCACAGCAACAGATATGTGGAAT...TTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CAA 72 bp | TATGGGCATACTTATTATTCAGATAAGAGGGCTCTTTaGGCACCTGAGTTGAACATAATACACAAGGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: YGHTYYSDKRAL*APELNIIHKER Trigger: TCTTTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATAATAAGTATGCCCATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CCA 90 bp | GTTTGGCTTCTTGGACCAACAGACTACTTCTTAAAGAATGTATGGGCATACTTATCTCCCAAGTTCTTTTaGGGTAAGAGTATAGAAATT | + |
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Preference number: 4 (lower is better) Translates to: VWLLGPTDYFLKNVWAYLSPKFF*GKSIEI Trigger: AATTTCTATACTCTTACCCCAAAAGAACTTGGGAGA...TAAGTATGCCCATACATTCTTTAAGAAGTAGTCTGTTGGTCCAAGAAGCCAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| 3UTR CAA 72 bp | TATTATTCAGATAAGAGGGCTCTTTTGGCACCTGAGTaGAACATAATACACAAGGAAAGAATATCTAACATG | + |
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Preference number: 4 (lower is better) Translates to: YYSDKRALLAPE*NIIHKERISNM Trigger: CATGTTAGATATTCTTTCCTTGTGTATTATGTTCAACTCAGGTGCCAAAAGAGCCCTCTTATCTGAATAATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS GCA 90 bp | ATCACGTGGGGACAAGACCTGGCCAGCTCCAGCACAGCTATCTCATaGAGAATTTCCGCCCGGCAATCCTGCCCTCTTCTCCTCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: ITWGQDLASSSTAIS*RISARQSCPLLLFF Trigger: GAAAAAGAGGAGAAGAGGGCAGGATTGCCGGGCGGAAATTCTGCATGAGATAGCTGTGCTGGAGCTGGCCAGGTCTTGTCCCCACGTGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS GCA 90 bp | AGCTCCAGCACAGCTATCTCATGCAGAATTTCCGCCCGGCAATCCTaGCCTCTTCTCCTCTTTTTCAGGGATTTGGCAGCATACTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: SSSTAISCRISARQS*PLLLFFRDLAAYSC Trigger: ACAAGAGTATGCTGCCAAATCCCTGAAAAAGAGGAGAAGAGGGCAGGATTGCCGGGCGGAAATTCTGCATGAGATAGCTGTGCTGGAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS TCA 90 bp | CTCTTCAGAGGACCTGAGAGTCAGATCCTGAATTTGAGAGGAGCCTaGAGTTTCCTCAGGATGAAACAAGCTTCCAAAGTCCCACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LFRGPESQILNLRGA*SFLRMKQASKVPLL Trigger: CAGCAGTGGGACTTTGGAAGCTTGTTTCATCCTGAGGAAACTTCAGGCTCCTCTCAAATTCAGGATCTGACTCTCAGGTCCTCTGAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CAA 90 bp | GAACACTCCCATGTGTTGTGTCCAGCAGAACACACACAAAAGGAGCCCAAAGATTCAGGTAAACACAGGTaGAAAATTTCTCCACCCGCA | + |
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Preference number: 5 (lower is better) Translates to: EHSHVLCPAEHTQKEPKDSGKHR*KISPPA Trigger: TGCGGGTGGAGAAATTTTCAACCTGTGTTTACCTGA...ATCTTTGGGCTCCTTTTGTGTGTGTTCTGCTGGACACAACACATGGGAGTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS TCA 90 bp | CTGCTGTTGGTCTTTTCTCTGGGTTCTTTACTAGAAGGCTCTGGATaGAGTCTGTGGCCAGCTGTGAAACTGATGAAAACATTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LLLVFSLGSLLEGSG*SLWPAVKLMKTFLL Trigger: CAGAAGAAATGTTTTCATCAGTTTCACAGCTGGCCACAGACTTCATCCAGAGCCTTCTAGTAAAGAACCCAGAGAAAAGACCAACAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CAA 90 bp | AAAAGGAGCCCAAAGATAGCTGCATGTCACACCTCCTCACTCACTAGAATTTCATTTCCCGAAGCTCACTaGCATTCCCAATTTTTCGAG | + |
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Preference number: 5 (lower is better) Translates to: KRSPKIAACHTSSLTRISFPEAH*HSQFFE Trigger: CTCGAAAAATTGGGAATGCAAGTGAGCTTCGGGAAA...TGAAATTCTAGTGAGTGAGGAGGTGTGACATGCAGCTATCTTTGGGCTCCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS-3UTR CAA 90 bp | GGAGTATTTATAAAGCAGTATATGTTGTGGTTTACCCTTGACAGCATTTCCCCACCATTACAGGAGGACTaGGAGGTCTTCTCTTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: GVFIKQYMLWFTLDSISPPLQED*EVFSSE Trigger: CTCTGAAGAGAAGACCTCCAAGTCCTCCTGTAATGG...TGGGGAAATGCTGTCAAGGGTAAACCACAACATATACTGCTTTATAAATACTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS CAA 72 bp | TCCTCCCGGGCTCCACAGCTCCCATTACAGGAGGACTaGGAGGTCTTCTCTTCAGAGGACCTGAGAGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSRAPQLPLQED*EVFSSEDLRVR Trigger: TCTGACTCTCAGGTCCTCTGAAGAGAAGACCTCCAAGTCCTCCTGTAATGGGAGCTGTGGAGCCCGGGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS CAA 72 bp | TTAGAAACTAAGCTGCCATCTTCAGGGATGTTCTCCTaGTCCTCCCGGGCTCCACAGCTCCCATTACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LETKLPSSGMFS*SSRAPQLPLQE Trigger: CTCCTGTAATGGGAGCTGTGGAGCCCGGGAGGACAAGGAGAACATCCCTGAAGATGGCAGCTTAGTTTCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS CAA 90 bp | CGAAATCTTTTAGAAACTAAGCTGCCATCTTCAGGGATGTTCTCCTaGTCCTCCCGGGCTCCACAGCTCCCATTACAGGAGGACTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: RNLLETKLPSSGMFS*SSRAPQLPLQEDLE Trigger: CTCCAAGTCCTCCTGTAATGGGAGCTGTGGAGCCCGGGAGGACAAGGAGAACATCCCTGAAGATGGCAGCTTAGTTTCTAAAAGATTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS GCA 72 bp | ACAGCTATCTCATGCAGAATTTCCGCCCGGCAATCCTaGCCTCTTCTCCTCTTTTTCAGGGATTTGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: TAISCRISARQS*PLLLFFRDLAA Trigger: TGCTGCCAAATCCCTGAAAAAGAGGAGAAGAGGGCAGGATTGCCGGGCGGAAATTCTGCATGAGATAGCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS CCA 72 bp | AACAAGCTTCCAAAGTCCCACTGCTGCAGCCATGAGTaGGATAGGCAGGATTCTGCTGTTGGTCTTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: NKLPKSHCCSHE*DRQDSAVGLFS Trigger: AGAGAAAAGACCAACAGCAGAATCCTGCCTATCCCACTCATGGCTGCAGCAGTGGGACTTTGGAAGCTTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS TCA 72 bp | GGACCTGAGAGTCAGATCCTGAATTTGAGAGGAGCCTaGAGTTTCCTCAGGATGAAACAAGCTTCCAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: GPESQILNLRGA*SFLRMKQASKV Trigger: GACTTTGGAAGCTTGTTTCATCCTGAGGAAACTTCAGGCTCCTCTCAAATTCAGGATCTGACTCTCAGGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS CAA 72 bp | TCAGATACCATTTCGGCTAACTCAGGTAAACACAGGTaGAAAATTTCTCCACCCGCAGCATATTCTAACACC | + |
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Preference number: 6 (lower is better) Translates to: SDTISANSGKHR*KISPPAAYSNT Trigger: GGTGTTAGAATATGCTGCGGGTGGAGAAATTTTCAACCTGTGTTTACCTGAGTTAGCCGAAATGGTATCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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| CDS GCA 72 bp | GTATTCAGGTGTTCCCATGATTTCCCGAAGCTCACTTaGATTCCCAATTTTTCGAGACATTCCAAAATCTAC | + |
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Preference number: 6 (lower is better) Translates to: VFRCSHDFPKLT*IPNFSRHSKIY Trigger: GTAGATTTTGGAATGTCTCGAAAAATTGGGAATGCAAGTGAGCTTCGGGAAATCATGGGAACACCTGAATAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027263.14 ENSMUST00000185920.2 |
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| CDS TCA 72 bp | AAATTTCTCCACCCGCAGCATATTCTAACACCAAAATaGTTTCCGTTGCATTTTCGTAGACCTCATGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: KFLHPQHILTPK*FPLHFRRPHAD Trigger: ATCTGCATGAGGTCTACGAAAATGCAACGGAAATCATTTTGGTGTTAGAATATGCTGCGGGTGGAGAAATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027263.14 |
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