RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STK11IP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026213

Ensembl transcript IDs: ENSMUST00000027414.16, ENSMUST00000113553.2

Found 327 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCATTTCCCCCTCACCCTCCCAGCAGACCAGACAGGGCATCGCCTaGGAGAAACCAACCCCAAGAATCGTCTCTCCATTGATAGCTGAA +
Preference number: 1 (lower is better)
Translates to: SISPSPSQQTRQGIA*EKPTPRIVSPLIAE
Trigger: TTCAGCTATCAATGGAGAGACGATTCTTGGGGTTGGTTTCTCCCAGGCGATGCCCTGTCTGGTCTGCTGGGAGGGTGAGGGGGAAATGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR CCA 90 bp AAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTaGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCC +
Preference number: 1 (lower is better)
Translates to: KGQMDSLVLLLSCGH*SFPSQWPTAARQAA
Trigger: GGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTaGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCA +
Preference number: 1 (lower is better)
Translates to: VTQGPDGFSCPSLKL*SLELPKPMANSSQA
Trigger: TGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 90 bp AGGTCTCAGTGCAAACAAGGTTGCTTCCGGGAAGAGATTAGGGGATaGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACC +
Preference number: 1 (lower is better)
Translates to: RSQCKQGCFREEIRG*QACWETFLHTTHDT
Trigger: GGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCAACCTTGTTTGCACTGAGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR GCA 90 bp GCAACAACTTTATTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTaGACTGACCACTTAGCCTGCTCTATTAGGCAGGTCACCCAAGGG +
Preference number: 1 (lower is better)
Translates to: ATTLLIPESKCWRNV*TDHLACSIRQVTQG
Trigger: CCCTTGGGTGACCTGCCTAATAGAGCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAATAAAGTTGTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR GCA 90 bp TGCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTaGTTCGCTCAAGAGGTGACTTCCAGAGTCAGCAATGACAGGATC +
Preference number: 1 (lower is better)
Translates to: CTCACICIEISGQVQ*FAQEVTSRVSNDRI
Trigger: GATCCTGTCATTGCTGACTCTGGAAGTCACCTCTTGAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR TCA 90 bp TATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCAAGAGGTaGCTTCCAGAGTCAGCAATGACAGGATCTCACTTTTTATTGCAG +
Preference number: 1 (lower is better)
Translates to: YALKFLDRYSASLKR*LPESAMTGSHFLLQ
Trigger: CTGCAATAAAAAGTGAGATCCTGTCATTGCTGACTCTGGAAGTCACCTCTTGAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR TCA 90 bp GAGACATTTCTACATACTACCCATGACACCTGGCAACAACTTTATTaGTACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACT +
Preference number: 1 (lower is better)
Translates to: ETFLHTTHDTWQQLY*YLRVSAGEMFALTT
Trigger: AGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAATAAAGTTGTTGCCAGGTGTCATGGGTAGTATGTAGAAATGTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAAGCTTCCCAAGCCAATaGCCAACAGCAGCCAGGCAA +
Preference number: 2 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSSFPSQ*PTAARQ
Trigger: TTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCT...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp AACAGGCCTGTCTGGGTCCCCTGCAGGCAGTACCAGAGGACAGCTATTCCAAGGTTGCTAGAGAAGGGCTaGGGACAGGTCTCAGTGCAA +
Preference number: 2 (lower is better)
Translates to: NRPVWVPCRQYQRTAIPRLLEKG*GQVSVQ
Trigger: TTGCACTGAGACCTGTCCCCAGCCCTTCTCTAGCAA...CCTTGGAATAGCTGTCCTCTGGTACTGCCTGCAGGGGACCCAGACAGGCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR CAA 90 bp CAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATaGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGC +
Preference number: 2 (lower is better)
Translates to: QGPDGFSCPSLKLWS*ELPKPMANSSQASS
Trigger: GCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR GCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTGGGGACAGGTCTCAGTaGAAACAAGGTTGCTTCCGG +
Preference number: 2 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCGDRSQ*KQGCFR
Trigger: CCGGAAGCAACCTTGTTTGCACTGAGACCTGTCCCC...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAGCTTCCCAAGCCAATaGCCAACAGCAGCCAGGCAA +
Preference number: 2 (lower is better)
Translates to: CFREEIRGWQACWETFLHSFPSQ*PTAARQ
Trigger: TTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCT...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTATTAAGCTGTGGTCATTaGAGCTTCCCAAGCCAATGG +
Preference number: 2 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVLSCGH*SFPSQW
Trigger: CCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAA...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGATTGCTAGAGAAGGGCTaGGGACAGGTCTCAGTGCAA +
Preference number: 2 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRLLEKG*GQVSVQ
Trigger: TTGCACTGAGACCTGTCCCCAGCCCTTCTCTAGCAA...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCCCTTCTCTTAAGCTGTaGTCATTGGAGCTTCCCAAG +
Preference number: 2 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGPSLKL*SLELPK
Trigger: CTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGG...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATCACCCAAGGGCCAGATaGATTCTCTTGTCCTTCTCT +
Preference number: 2 (lower is better)
Translates to: CFREEIRGWQACWETFLHHPRAR*ILLSFS
Trigger: AGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTG...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAGGATGGCAGGCTTGCTaGGAGACATTTCTACATACT +
Preference number: 2 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRGWQAC*ETFLHT
Trigger: AGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCC...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CAA 90 bp AAATTCAGGGCAGCGTTGAACAAAACAGAAGTAGGTGAGATTACTTaGAGAGCCTCTGAACAGGCCTGTCTGGGTCCCCTGCAGGCAGTA +
Preference number: 2 (lower is better)
Translates to: KFRAALNKTEVGEIT*RASEQACLGPLQAV
Trigger: TACTGCCTGCAGGGGACCCAGACAGGCCTGTTCAGAGGCTCTCAAAGTAATCTCACCTACTTCTGTTTTGTTCAACGCTGCCCTGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR-3UTR GCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATATGCTGGAGAAATGTTTaGACTGACCACTTAGCCTGC +
Preference number: 2 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYICWRNV*TDHLAC
Trigger: GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCA...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACCTTCTCTTAAGCTGTaGTCATTGGAGCTTCCCAAG +
Preference number: 2 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYIPSLKL*SLELPK
Trigger: CTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGG...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR TCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAGAGAAATGTTTGCACTaGCCACTTAGCCTGCTCTAT +
Preference number: 2 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYIEKCLH*PLSLLY
Trigger: ATAGAGCAGGCTAAGTGGTCAGTGCAAACATTTCTC...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR GCA 90 bp AACAAAACAGAAGTAGGTGAGATTACTTTGAGAGCCTCTGAACAGGCCTGTCTGACATGTGCGTGTATATaGATTGAAATTTCTGGACAG +
Preference number: 2 (lower is better)
Translates to: NKTEVGEITLRASEQACLTCACI*IEISGQ
Trigger: CTGTCCAGAAATTTCAATGCATATACACGCACATGT...CAGACAGGCCTGTTCAGAGGCTCTCAAAGTAATCTCACCTACTTCTGTTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR CCA 72 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATaGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGA +
Preference number: 3 (lower is better)
Translates to: LLSCGHWSFPSQ*PTAARQAARPR
Trigger: TCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 72 bp TCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTaGGGACTGGGTACATCAGGGTCAGTAATCCTACTT +
Preference number: 3 (lower is better)
Translates to: SHARPLDRSQPA*GLGTSGSVILL
Trigger: AAGTAGGATTACTGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 72 bp GGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTaGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGC +
Preference number: 3 (lower is better)
Translates to: GPDGFSCPSLKL*SLELPKPMANS
Trigger: GCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 72 bp ATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTaGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGG +
Preference number: 3 (lower is better)
Translates to: MDSLVLLLSCGH*SFPSQWPTAAR
Trigger: CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 72 bp TGCAAACAAGGTTGCTTCCGGGAAGAGATTAGGGGATaGCAGGCTTGCTGGGAGACATTTCTACATACTACC +
Preference number: 3 (lower is better)
Translates to: CKQGCFREEIRG*QACWETFLHTT
Trigger: GGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCAACCTTGTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR-3UTR CAA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATCTGGCAACAACTTTATaGATACCTGAGAGTAAGTGC +
Preference number: 3 (lower is better)
Translates to: CFREEIRGWQACWETFLHLATTL*IPESKC
Trigger: GCACTTACTCTCAGGTATCAATAAAGTTGTTGCCAG...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR TCA 72 bp GCAGGCTTGCTGGGAGACATTTCTACATACTACCCATaGCACCTGGCAACAACTTTATTGATACCTGAGAGT +
Preference number: 3 (lower is better)
Translates to: AGLLGDISTYYP*HLATTLLIPES
Trigger: ACTCTCAGGTATCAATAAAGTTGTTGCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR GCA 72 bp GCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTaGTTCGCTCAAGAGGTGACTTCCAGAGTCAGCAAT +
Preference number: 3 (lower is better)
Translates to: ACICIEISGQVQ*FAQEVTSRVSN
Trigger: ATTGCTGACTCTGGAAGTCACCTCTTGAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
3UTR CCA 72 bp GGGAAGAGGGGAAGTTCACAACTTTTTCACAATTGGTaGCTCACGCCATTAATCTCAACACTTAGAAGGCAG +
Preference number: 3 (lower is better)
Translates to: GKRGSSQLFHNW*LTPLISTLRRQ
Trigger: CTGCCTTCTAAGTGTTGAGATTAATGGCGTGAGCCACCAATTGTGAAAAAGTTGTGAACTTCCCCTCTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR GCA 72 bp TTATTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTaGACTGACCACTTAGCCTGCTCTATTAGGCAGGTC +
Preference number: 3 (lower is better)
Translates to: LLIPESKCWRNV*TDHLACSIRQV
Trigger: GACCTGCCTAATAGAGCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CCA 72 bp TTTGGGAAGAGGGGAAGTTCACAACTTTTTCACAATTaGTGGCTCACGCCATTAATCTCAACACTTAGAAGG +
Preference number: 3 (lower is better)
Translates to: FGKRGSSQLFHN*WLTPLISTLRR
Trigger: CCTTCTAAGTGTTGAGATTAATGGCGTGAGCCACCAATTGTGAAAAAGTTGTGAACTTCCCCTCTTCCCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR TCA 72 bp CTACATACTACCCATGACACCTGGCAACAACTTTATTaGTACCTGAGAGTAAGTGCTGGAGAAATGTTTGCA +
Preference number: 3 (lower is better)
Translates to: LHTTHDTWQQLY*YLRVSAGEMFA
Trigger: TGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAATAAAGTTGTTGCCAGGTGTCATGGGTAGTATGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCCCTCACCCTCCCAGCAGACCAGACAGGGCATCGCCTGGGAGAAACCAACCCCCTGGGACAGCCACCGTaGTCAGCGAGGTCACAGGCA +
Preference number: 4 (lower is better)
Translates to: PLTLPADQTGHRLGETNPLGQPP*SARSQA
Trigger: TGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAG...GGGGTTGGTTTCTCCCAGGCGATGCCCTGTCTGGTCTGCTGGGAGGGTGAGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR TCA 90 bp GCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCCCAGCGCAGCCCCTaGTGGTCCCACTCTTGGCAC +
Preference number: 4 (lower is better)
Translates to: AVVIGASQANGQQQPGKQPQRSP*WSHSWH
Trigger: GTGCCAAGAGTGGGACCATCAGGGGCTGCGCTGGGG...CTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACCCCAGCGCAGCCCCTaGTGGTCCCACTCTTGGCAC +
Preference number: 4 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVPQRSP*WSHSWH
Trigger: GTGCCAAGAGTGGGACCATCAGGGGCTGCGCTGGGG...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGATCCCTGGCCCGTGGTaGCAAGTACTGGGCGGTGGC +
Preference number: 4 (lower is better)
Translates to: AVVIGASQANGQQQPGKQIPGPW*QVLGGG
Trigger: GCCACCGCCCAGTACTTGTCACCACGGGCCAGGGAT...CTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AACAGGCCTGTCTGGGTCCCCTGCAGGCAGTACCAGAGGACAGCTATTCCAAGGCGAGGCCGAGCTCCATaGCACTCAGGTCCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: NRPVWVPCRQYQRTAIPRRGRAP*HSGPAE
Trigger: CTCTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCG...CCTTGGAATAGCTGTCCTCTGGTACTGCCTGCAGGGGACCCAGACAGGCCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTATGCTGCTCCCTGACCTaGAGGGAAGGACCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVCCSLT*REGPGP
Trigger: GGGGCCAGGTCCTTCCCTGCAGGTCAGGGAGCAGCA...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCTGGAGGATGACGGGTaGGTCTGCAGGGTGGGAGGG +
Preference number: 4 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARLEDDG*VCRVGG
Trigger: CCCTCCCACCCTGCAGACTCACCCGTCATCCTCCAG...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGTCAAGCAGGAAGCCATaGGCAGCATCCCTGGCCCGT +
Preference number: 4 (lower is better)
Translates to: AVVIGASQANGQQQPGKQSSRKP*AASLAR
Trigger: ACGGGCCAGGGATGCTGCTCATGGCTTCCTGCTTGA...CTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AACAGGCCTGTCTGGGTCCCCTGCAGGCAGTACCAGAGGACAGCTATTCCAAGGCCAGCTGTGAGTAGATaGCACGGAGGCCACACAGGC +
Preference number: 4 (lower is better)
Translates to: NRPVWVPCRQYQRTAIPRPAVSR*HGGHTG
Trigger: GCCTGTGTGGCCTCCGTGGCATCTACTCACAGCTGG...CCTTGGAATAGCTGTCCTCTGGTACTGCCTGCAGGGGACCCAGACAGGCCTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp GCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGGGTGGCTGCACGGTGTaGAGGGTGGAACCACAAAGG +
Preference number: 4 (lower is better)
Translates to: AVVIGASQANGQQQPGKQGGCTV*RVEPQR
Trigger: CCTTTGTGGTTCCACCCTGCACACCGTGCAGCCACC...CTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCACTGGCCTGGGCCCCATaGCCCCAGGTACAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSLAWAP*PQVQFK
Trigger: TTTGAACTGTACCTGGGGCCATGGGGCCCAGGCCAG...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGCGTGGTGACAAGTACTaGGCGGTGGCTGCACGGTGT +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETRRGDKY*AVAARC
Trigger: ACACCGTGCAGCCACCGCCCAGTACTTGTCACCACG...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCGGTCCTGCAGAGCAATaGCCAGGGTGGGCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGGPAEQ*PGWAGA
Trigger: GGCTCCAGCCCACCCTGGCCATTGCTCTGCAGGACC...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCGTGGTTGCTGCTCCCTaGCCTGCAGGGAAGGACCTG +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGVVAAP*PAGKDL
Trigger: CAGGTCCTTCCCTGCAGGTCAGGGAGCAGCAACCAC...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGGAATGGGGTCAGTACTaGAAGCAGCTCCTGGACGGC +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETREWGQY*KQLLDG
Trigger: GCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTC...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCGAGGCCGAGCTCCATaGCACTCAGGTCCTGCAGAG +
Preference number: 4 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARRGRAP*HSGPAE
Trigger: CTCTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCG...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCACGAAGGCTCTGGCCTaGGAGGCCGAGCTCCATGCC +
Preference number: 4 (lower is better)
Translates to: PSLKLWSLELPKPMANSSTKALA*EAELHA
Trigger: GGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGT...GCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AACAGGCCTGTCTGGGTCCCCTGCAGGCAGTACCAGAGGACAGCTATTCCAAGGCAGCTGAGTGGTTGCTaGTCCCTGACCTGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: NRPVWVPCRQYQRTAIPRQLSGC*SLTCRE
Trigger: TTCCCTGCAGGTCAGGGAGCAGCAACCACTCAGCTG...CCTTGGAATAGCTGTCCTCTGGTACTGCCTGCAGGGGACCCAGACAGGCCTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CCA 90 bp GCAGTACCAGAGGACAGCTATTCCAAGGGCACTTCCCATTGGCCAGCCAGTCCTCGTGGTGACAAGTACTaGGCGGTGGCTGCACGGTGT +
Preference number: 4 (lower is better)
Translates to: AVPEDSYSKGTSHWPASPRGDKY*AVAARC
Trigger: ACACCGTGCAGCCACCGCCCAGTACTTGTCACCACG...AGGACTGGCTGGCCAATGGGAAGTGCCCTTGGAATAGCTGTCCTCTGGTACTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CCA 90 bp GCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGAGTGGTACTCCCCACTaGCCAGGACAGAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: AVVIGASQANGQQQPGKQSGTPH*PGQRLD
Trigger: ATCCAGCCTCTGTCCTGGCCAGTGGGGAGTACCACT...CTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCAGTACCAGAGGACAGCTATTCCAAGGGCACTTCCCATTGGCCAGCCAGTCCTCCCATGGTCTCCAGGTaGCTCCTGTACTGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: AVPEDSYSKGTSHWPASPPMVSR*LLYCSQ
Trigger: CTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGG...AGGACTGGCTGGCCAATGGGAAGTGCCCTTGGAATAGCTGTCCTCTGGTACTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAAGGTCCAGAGCCTCCTaGGTTACTGTCCGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSRSRAS*VTVRSP
Trigger: TGGACTCCGGACAGTAACCCAGGAGGCTCTGGACCT...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTCTGGAGGATGACGGGTaGGTCTGCAGGGTGGGAGGG +
Preference number: 4 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCLEDDG*VCRVGG
Trigger: CCCTCCCACCCTGCAGACTCACCCGTCATCCTCCAG...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGAGCTGCTCCAGGCCCTaGAGGCTGCGGAGCTCATTG +
Preference number: 4 (lower is better)
Translates to: RGWQACWETFLHTTHDTWSCSRP*RLRSSL
Trigger: CAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCT...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAAGCTGCTCCAGGCCCTaGAGGCTGCGGAGCTCATTG +
Preference number: 4 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRSCSRP*RLRSSL
Trigger: CAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCT...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp AACAGGCCTGTCTGGGTCCCCTGCAGGCAGTACCAGAGGACAGCTATTCCAAGGACAAGTGGGCAGAAGTaGCCCGGAGAAAGCACTCCT +
Preference number: 4 (lower is better)
Translates to: NRPVWVPCRQYQRTAIPRTSGQK*PGESTP
Trigger: AGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGT...CCTTGGAATAGCTGTCCTCTGGTACTGCCTGCAGGGGACCCAGACAGGCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR TCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCCCCGGGGAATGGACCTaGGCCCTCAGACACTGGTTC +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLPGEWT*ALRHWF
Trigger: GAACCAGTGTCTGAGGGCTCAGGTCCATTCCCCGGG...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAGGATGCCATCAGGCCTaGTGGGACAGCCACCGTGGT +
Preference number: 4 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRGCHQA*WDSHRG
Trigger: ACCACGGTGGCTGTCCCAGCAGGCCTGATGGCATCC...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGTGGGAGAGGAGACTCTaGATGGGACCCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARWERRL*MGPSRV
Trigger: GACCCTGGAGGGTCCCATGCAGAGTCTCCTCTCCCA...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCCTGGCCTGGGCCCCATaGCCCCAGGTACAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGLAWAP*PQVQFK
Trigger: TTTGAACTGTACCTGGGGCCATGGGGCCCAGGCCAG...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGCATGAGCAGCATCCCTaGCCCGTGGTGACAAGTACT +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETRHEQHP*PVVTST
Trigger: AGTACTTGTCACCACGGGCCAGGGATGCTGCTCATG...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCCCCATGGTCTCCAGGTaGCTCCTGTACTGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGPMVSR*LLYCSQ
Trigger: CTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGG...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCCTGGGACAGCCACCGTaGTCAGCGAGGTCACAGGCA +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLLGQPP*SARSQA
Trigger: TGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAG...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGAAGAGCCGGAGTCGGTaGTCCACAGAGCGAAAACCA +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETRKSRSR*STERKP
Trigger: TGGTTTTCGCTCTGTGGACCACCGACTCCGGCTCTT...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAATCCCTGGCCCGTGGTaGCAAGTACTGGGCGGTGGC +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPIPGPW*QVLGGG
Trigger: GCCACCGCCCAGTACTTGTCACCACGGGCCAGGGAT...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATGTGGTTGCTGCTCCCTaGCCTGCAGGGAAGGACCTG +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHVVAAP*PAGKDL
Trigger: CAGGTCCTTCCCTGCAGGTCAGGGAGCAGCAACCAC...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCCCAGCTGTGAGTAGATaGCACGGAGGCCACACAGGC +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLPAVSR*HGGHTG
Trigger: GCCTGTGTGGCCTCCGTGGCATCTACTCACAGCTGG...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AACAGGCCTGTCTGGGTCCCCTGCAGGCAGTACCAGAGGACAGCTATTCCAAGGCCTGGATGCTTCTGTTaGAAACCAGGGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: NRPVWVPCRQYQRTAIPRPGCFC*KPGTPA
Trigger: AGCTGGAGTCCCTGGTTTGCAACAGAAGCATCCAGG...CCTTGGAATAGCTGTCCTCTGGTACTGCCTGCAGGGGACCCAGACAGGCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGACGAAGGCTCTGGCCTaGGAGGCCGAGCTCCATGCC +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLTKALA*EAELHA
Trigger: GGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGT...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCGTACACAGCTGCCAGTaGCAGCTGCCCACTCCAGAC +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLVHSCQ*QLPTPD
Trigger: GTCTGGAGTGGGCAGCTGGCACTGGCAGCTGTGTAC...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGGTACACAGCTGCCAGTaGCAGCTGCCCACTCCAGAC +
Preference number: 4 (lower is better)
Translates to: RGWQACWETFLHTTHDTWVHSCQ*QLPTPD
Trigger: GTCTGGAGTGGGCAGCTGGCACTGGCAGCTGTGTAC...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAAGGAAGGCTCGGCACTaGCTAGCATCTCGGGGCAGT +
Preference number: 4 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRRKARH*LASRGS
Trigger: ACTGCCCCGAGATGCTAGGCAGTGCCGAGCCTTCCT...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAGTACGAGGCAGAGACTaGAATACACCAGTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSVRGRD*NTPVSS
Trigger: GGAGCTCACTGGTGTATTGCAGTCTCTGCCTCGTAC...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCACCCAGAGAAGCAGGCTaGTCTGAGGTTTCATCAGAC +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSPREAG*SEVSSD
Trigger: GTCTGATGAAACCTCAGAGCAGCCTGCTTCTCTGGG...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCACAAGTACTGGGCGGTaGCTGCACGGTGTGCAGGGT +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLTSTGR*LHGVQG
Trigger: ACCCTGCACACCGTGCAGCCACCGCCCAGTACTTGT...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGACCGCTCCCGGAAGCTaGCCAGCAGCTCCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLTAPGS*PAAPVP
Trigger: GGGAACTGGAGCTGCTGGCCAGCTTCCGGGAGCGGT...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCGAATCTGGCCCCCTGTaGGTCCTTGTTTGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLESGPL*VLVCPR
Trigger: CCTGGGGCAAACAAGGACCCACAGGGGGCCAGATTC...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAGCTGACTGCTCTTCCTaGTTCTGCTCTCTATTCGGG +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSADCSS*FCSLFG
Trigger: CCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGC...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCAGAGCATCCAGGGGATaGGCTGAGACTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGRASRG*AETPAA
Trigger: AGCAGCTGGAGTCTCAGCCCATCCCCTGGATGCTCT...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGGGTCCTGCAGAGCAATaGCCAGGGTGGGCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLGPAEQ*PGWAGA
Trigger: GGCTCCAGCCCACCCTGGCCATTGCTCTGCAGGACC...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCACCCTGCCTTCCTCTaGCACCTTCTCTGGCGATTC +
Preference number: 4 (lower is better)
Translates to: RGWQACWETFLHTTHDTWHPAFL*HLLWRF
Trigger: GAATCGCCAGAGAAGGTGTCAGAGGAAGGCAGGGTG...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACACCCTGCCTTCCTCTaGCACCTTCTCTGGCGATTC +
Preference number: 4 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRHPAFL*HLLWRF
Trigger: GAATCGCCAGAGAAGGTGTCAGAGGAAGGCAGGGTG...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGCCCGGGGAATGGACCTaGGCCCTCAGACACTGGTTC +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLPGEWT*ALRHWF
Trigger: GAACCAGTGTCTGAGGGCTCAGGTCCATTCCCCGGG...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATATCCAGGGGATGGGCTaGGACTCCAGCTGCTACGGT +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHIQGMG*DSSCYG
Trigger: ACCGTAGCAGCTGGAGTCTCAGCCCATCCCCTGGAT...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTAAACACTCTGTTCAGCTaGTGCAGTGTGGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVNTLFS*CSVAVS
Trigger: GCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTT...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCCTCCAGTGCCTGGATaGTTCTGTTGCAAACCAGGG +
Preference number: 4 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARPPVPG*FCCKPG
Trigger: CCCTGGTTTGCAACAGAAGCATCCAGGCACTGGAGG...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAGAGCTCAGCTTCCACTaGCTTCTGCTCCTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRELSFH*LLLLLL
Trigger: GAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTC...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCATGCTCTTCCTGGTTCTaGTCTCTATTCGGGACTTCC +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSCSSWF*SLFGTS
Trigger: GGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCA...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGATGTCTGAGGTGGGATaGCATCAGGCCTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: RGWQACWETFLHTTHDTWMSEVG*HQACWD
Trigger: GTCCCAGCAGGCCTGATGGCATCCCACCTCAGACAT...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAAAAGCCTGTCTGGCCTaGGCCCCATGGCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPKACLA*APWPQV
Trigger: TACCTGGGGCCATGGGGCCCAGGCCAGACAGGCTTT...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAACAAGTACTGGGCGGTaGCTGCACGGTGTGCAGGGT +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYITSTGR*LHGVQG
Trigger: ACCCTGCACACCGTGCAGCCACCGCCCAGTACTTGT...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCACCTGAGGTTTCAGTaGTACTCCCCACTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: RGWQACWETFLHTTHDTWHLRFQ*YSPLAR
Trigger: CCTGGCCAGTGGGGAGTACCACTGAAACCTCAGGTG...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATCACAAACCACCCAGCTaGGGAGGGGTCCAGAGTTCG +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHHKPPS*GGVQSS
Trigger: CGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTG...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGACCGCTCCCGGAAGCTaGCCAGCAGCTCCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: DSLVLLLSCGHWSFPSQWTAPGS*PAAPVP
Trigger: GGGAACTGGAGCTGCTGGCCAGCTTCCGGGAGCGGT...CCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGGGGAGCTCCCCATaGTCTCCAGGTGGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLEGSSP*SPGGSC
Trigger: ACAGGAGCCACCTGGAGACCATGGGGAGCTCCCCTC...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCATCCACTTCAAACAAGTaGGCAGAAGTGACCCGGAGA +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSSTSNK*AEVTRR
Trigger: TCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGA...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTATATGGATGTCTGAGGTaGGATGCCATCAGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVYGCLR*DAIRPA
Trigger: AGCAGGCCTGATGGCATCCCACCTCAGACATCCATA...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAACCTTGATACAGCACTaGAACTCCTCCTCGGAGTCA +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSTLIQH*NSSSES
Trigger: TGACTCCGAGGAGGAGTTCCAGTGCTGTATCAAGGT...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGCTAATAGGTACAGGGTaGACAACGTCAGCAACAGGG +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETRLIGTG*TTSATG
Trigger: CCCTGTTGCTGACGTTGTCCACCCTGTACCTATTAG...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCACATCGAAGAGGAACTaGAGCTGGAGGATGACGGGT +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGTSKRN*SWRMTG
Trigger: ACCCGTCATCCTCCAGCTTCAGTTCCTCTTCGATGT...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGGGATATGGACCAGCTTaGGTGACAGTGTTTTCTGCA +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETRGYGPA*VTVFSA
Trigger: TGCAGAAAACACTGTCACTCAAGCTGGTCCATATCC...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATGCTCTGGCTCCACCCTaGCTTCCTCTGACACCTTCT +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHALAPP*LPLTPS
Trigger: AGAAGGTGTCAGAGGAAGGCAGGGTGGAGCCAGAGC...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCAGTACCAGAGGACAGCTATTCCAAGGGCACTTCCCATTGGCCAGCCAGTCCTCTCCAGAGTCCGAGCTaGTTGGAGTTCCACTTCAAA +
Preference number: 4 (lower is better)
Translates to: AVPEDSYSKGTSHWPASPLQSPS*LEFHFK
Trigger: TTTGAAGTGGAACTCCAAGCAGCTCGGACTCTGGAG...AGGACTGGCTGGCCAATGGGAAGTGCCCTTGGAATAGCTGTCCTCTGGTACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTAGCAGAATCTGCTGACTaGTCTTCCTGGTTCTGCTCT +
Preference number: 4 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVAESAD*SSWFCS
Trigger: AGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGC...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTATGTCTGAGGTGGGATaGCATCAGGCCTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCMSEVG*HQACWD
Trigger: GTCCCAGCAGGCCTGATGGCATCCCACCTCAGACAT...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATATGCCACTCAGGTCCTaGAGAGCAATGGCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHMPLRS*RAMARV
Trigger: CACCCTGGCCATTGCTCTGCAGGACCTGAGTGGCAT...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATGCAGTAGTACACAGCTaGCAGTGCCAGCTGCCCACT +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHAVVHS*QCQLPT
Trigger: AGTGGGCAGCTGGCACTGGCAGCTGTGTACTACTGC...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACAGCTGAGTGGTTGCTaGTCCCTGACCTGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYIQLSGC*SLTCRE
Trigger: TTCCCTGCAGGTCAGGGAGCAGCAACCACTCAGCTG...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATCAGAGTTCGGAGCTCTaGGTCTGTGTCACTGGGCTC +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHQSSEL*VCVTGL
Trigger: GAGCCCAGTGACACAGACCCAGAGCTCCGAACTCTG...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGCAATCTGGACTCCTCTaGCTTGAACTCACAGCTACA +
Preference number: 4 (lower is better)
Translates to: SQANGQQQPGKQPDLETRQSGLL*LELTAT
Trigger: TGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTG...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAGAGCATCCAGGGGATaGGCTGAGACTCCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHRASRG*AETPAA
Trigger: AGCAGCTGGAGTCTCAGCCCATCCCCTGGATGCTCT...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCTGATGCAGTTCCTTTaGGTACGAGGCAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARLMQFL*VRGRDC
Trigger: GCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAG...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATGTCTTTTCCCAGCAATaGCCAGAGCCGATGCTGCGG +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHVFSQQ*PEPMLR
Trigger: CCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGAC...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCACTCAGACAGCTGAGTaGTTGCTGCTCCCTGACCTG +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLTQTAE*LLLPDL
Trigger: CAGGTCAGGGAGCAGCAACCACTCAGCTGTCTGAGT...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCACTCAGACAGCTGAGTaGTTGCTGCTCCCTGACCTG +
Preference number: 4 (lower is better)
Translates to: PSLKLWSLELPKPMANSSTQTAE*LLLPDL
Trigger: CAGGTCAGGGAGCAGCAACCACTCAGCTGTCTGAGT...GCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCTGTCCGGAGTCCAATaGAGAACAACTCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARLSGVQ*RTTLPR
Trigger: CCTGGGAAGAGTTGTTCTCCATTGGACTCCGGACAG...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCACATCGAAGAGGAACTaGAGCTGGAGGATGACGGGT +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLTSKRN*SWRMTG
Trigger: ACCCGTCATCCTCCAGCTTCAGTTCCTCTTCGATGT...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGTGGACTCCTCTGGCTTaGACTCACAGCTACAACGCA +
Preference number: 4 (lower is better)
Translates to: RGWQACWETFLHTTHDTWWTPLA*THSYNA
Trigger: TGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCA...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAGGAGATTCTGTATTTTaGAACAGAGGCTTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSGDSVF*NRGFQP
Trigger: AGGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCC...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTTGGGATATGGATGTCTaGGGTGGGATGCCATCAGGC +
Preference number: 4 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCWDMDV*GGMPSG
Trigger: GCCTGATGGCATCCCACCTCAGACATCCATATCCCA...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCAACACTCTGTTCAGCTaGTGCAGTGTGGCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: PSLKLWSLELPKPMANSSNTLFS*CSVAVS
Trigger: GCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTT...GCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCGGGCCTGGGCCACAATaGCCCCTGAGGAGAGGCTAT +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACGPGPQ*PLRRGY
Trigger: ATAGCCTCTCCTCAGGGGGCATTGTGGCCCAGGCCC...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAGCTCTGGCTCCACCCTaGCTTCCTCTGACACCTTCT +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPALAPP*LPLTPS
Trigger: AGAAGGTGTCAGAGGAAGGCAGGGTGGAGCCAGAGC...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAGAGCTCAGCTTCCACTaGCTTCTGCTCCTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPELSFH*LLLLLL
Trigger: GAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTC...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCTTGTTTGCCCCAGGCTaGTGTTCTTTCACACTGGTG +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGLFAPG*CSFTLV
Trigger: CACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAA...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGATGCCACTCAGGTCCTaGAGAGCAATGGCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLMPLRS*RAMARV
Trigger: CACCCTGGCCATTGCTCTGCAGGACCTGAGTGGCAT...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCATGGGAGAGGAGACTCTaGATGGGACCCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: DGFSCPSLKLWSLELPKPWERRL*MGPSRV
Trigger: GACCCTGGAGGGTCCCATGCAGAGTCTCCTCTCCCA...TGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCCCCAGAGAAGCAGGCTaGTCTGAGGTTTCATCAGAC +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLPREAG*SEVSSD
Trigger: GTCTGATGAAACCTCAGAGCAGCCTGCTTCTCTGGG...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAAAAAGCCTGTCTGGCCTaGGCCCCATGGCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: MDSLVLLLSCGHWSFPSQKACLA*APWPQV
Trigger: TACCTGGGGCCATGGGGCCCAGGCCAGACAGGCTTT...TTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAAGTGGTACTCCCCACTaGCCAGGACAGAGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPSGTPH*PGQRLD
Trigger: ATCCAGCCTCTGTCCTGGCCAGTGGGGAGTACCACT...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAAGAGGGGAGCTCCCCATaGTCTCCAGGTGGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: MDSLVLLLSCGHWSFPSQEGSSP*SPGGSC
Trigger: ACAGGAGCCACCTGGAGACCATGGGGAGCTCCCCTC...TTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTGTCGTCCTCTATGGCTaGAGGGCTGCATACAGTCTC +
Preference number: 4 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCVVLYG*RAAYSL
Trigger: GAGACTGTATGCAGCCCTCCAGCCATAGAGGACGAC...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCAGGGACATACCAACATaGGGCGACAGAGCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLRDIPT*GDRAQL
Trigger: AAGCTGAGCTCTGTCGCCCCATGTTGGTATGTCCCT...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTAAGAGCCGGAGTCGGTaGTCCACAGAGCGAAAACCA +
Preference number: 4 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCKSRSR*STERKP
Trigger: TGGTTTTCGCTCTGTGGACCACCGACTCCGGCTCTT...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp CCTGCTCTATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCCTGATGCAGTTCCTTTaGGTACGAGGCAGAGACTGC +
Preference number: 4 (lower is better)
Translates to: PALLGRSPKGQMDSLVLLLMQFL*VRGRDC
Trigger: GCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAG...GAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAATAGAGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGGTCTTTTCCCAGCAATaGCCAGAGCCGATGCTGCGG +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLVFSQQ*PEPMLR
Trigger: CCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGAC...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTAGGAGATTCTGTATTTTaGAACAGAGGCTTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVGDSVF*NRGFQP
Trigger: AGGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCC...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCATCCAGGGGATGGGCTaGGACTCCAGCTGCTACGGT +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACIQGMG*DSSCYG
Trigger: ACCGTAGCAGCTGGAGTCTCAGCCCATCCCCTGGAT...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCACCTCCAGTGCCTGGATaGTTCTGTTGCAAACCAGGG +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPPPVPG*FCCKPG
Trigger: CCCTGGTTTGCAACAGAAGCATCCAGGCACTGGAGG...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCGGTGGCTGCACGGTGTaGAGGGTGGAACCACAAAGG +
Preference number: 4 (lower is better)
Translates to: AHVRVYALKFLDRYSASLGGCTV*RVEPQR
Trigger: CCTTTGTGGTTCCACCCTGCACACCGTGCAGCCACC...GAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp GGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGCTCAGGGACAAAACCTTaGCATCAAGCAGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: GDGRLAGRHFYILPMTPGSGTKP*HQAGSH
Trigger: ATGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGA...GCCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTACACCCCCAAGTCCCTaGAAGGGACATACCAACATG +
Preference number: 4 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCTPPSP*KGHTNM
Trigger: CATGTTGGTATGTCCCTTGCAGGGACTTGGGGGTGT...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAGAATGGGGTCAGTACTaGAAGCAGCTCCTGGACGGC +
Preference number: 4 (lower is better)
Translates to: DGFSCPSLKLWSLELPKPEWGQY*KQLLDG
Trigger: GCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTC...TGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAAACTGGGGCACCTCTaGAGAAGGGTCTTTTCCCAG +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHKLGHL*RRVFSQ
Trigger: CTGGGAAAAGACCCTTCTGCAGAGGTGCCCCAGTTT...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGGGTGAGTCTGCAGGGTaGGAGGGAAGAGCCACAAAG +
Preference number: 4 (lower is better)
Translates to: DSLVLLLSCGHWSFPSQWGESAG*EGRATK
Trigger: CTTTGTGGCTCTTCCCTCCCACCCTGCAGACTCACC...CCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGCATGAGCAGCATCCCTaGCCCGTGGTGACAAGTACT +
Preference number: 4 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLHEQHP*PVVTST
Trigger: AGTACTTGTCACCACGGGCCAGGGATGCTGCTCATG...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAGCTAGGAGAACCACGTaGTCACTCCCACAGTTTGGA +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYIARRTT*SLPQFG
Trigger: TCCAAACTGTGGGAGTGACCACGTGGTTCTCCTAGC...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATATGGACCAGCTTGAGTaGCAGTGTTTTCTGCAGCAC +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHMDQLE*QCFLQH
Trigger: GTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCAT...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCATGGACTCCTCTGGCTTaGACTCACAGCTACAACGCA +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPWTPLA*THSYNA
Trigger: TGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCA...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGCTATGGCTGGAGGGCTaGATACAGTCTCCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLLWLEG*IQSPGS
Trigger: AGAACCTGGAGACTGTATGCAGCCCTCCAGCCATAG...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTCCAGAGTCCGAGCTaGTTGGAGTTCCACTTCAAA +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYILQSPS*LEFHFK
Trigger: TTTGAAGTGGAACTCCAAGCAGCTCGGACTCTGGAG...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATTTGTTTGCCCCAGGCTaGTGTTCTTTCACACTGGTG +
Preference number: 4 (lower is better)
Translates to: CFREEIRGWQACWETFLHLFAPG*CSFTLV
Trigger: CACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAA...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCGCAGTAGTACACAGCTaGCAGTGCCAGCTGCCCACT +
Preference number: 4 (lower is better)
Translates to: AHVRVYALKFLDRYSASLAVVHS*QCQLPT
Trigger: AGTGGGCAGCTGGCACTGGCAGCTGTGTACTACTGC...GAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp ATATGCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCTGCTGCTCCCTGACCTaGAGGGAAGGACCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: ICTCACICIEISGQVQCFCCSLT*REGPGP
Trigger: GGGGCCAGGTCCTTCCCTGCAGGTCAGGGAGCAGCA...GAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGCATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTTGTGCGATACAGCTaGACAGAACTCAGACAGCTG +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYILVRYS*TELRQL
Trigger: CAGCTGTCTGAGTTCTGTGCAGCTGTATCGCACAAG...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCCACCTGAGGTTTCAGTaGTACTCCCCACTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACHLRFQ*YSPLAR
Trigger: CCTGGCCAGTGGGGAGTACCACTGAAACCTCAGGTG...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAACAGAGTTCGGAGCTCTaGGTCTGTGTCACTGGGCTC +
Preference number: 4 (lower is better)
Translates to: MDSLVLLLSCGHWSFPSQQSSEL*VCVTGL
Trigger: GAGCCCAGTGACACAGACCCAGAGCTCCGAACTCTG...TTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGGTCGTCCTCTATGGCTaGAGGGCTGCATACAGTCTC +
Preference number: 4 (lower is better)
Translates to: DSLVLLLSCGHWSFPSQWVVLYG*RAAYSL
Trigger: GAGACTGTATGCAGCCCTCCAGCCATAGAGGACGAC...CCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGAGGGACATACCAACATaGGGCGACAGAGCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLRDIPT*GDRAQL
Trigger: AAGCTGAGCTCTGTCGCCCCATGTTGGTATGTCCCT...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATATCCACTTCAAACAAGTaGGCAGAAGTGACCCGGAGA +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYISTSNK*AEVTRR
Trigger: TCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGA...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGGCTAGGAGAACCACGTaGTCACTCCCACAGTTTGGA +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLARRTT*SLPQFG
Trigger: TCCAAACTGTGGGAGTGACCACGTGGTTCTCCTAGC...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAGCTGACTGCTCTTCCTaGTTCTGCTCTCTATTCGGG +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPADCSS*FCSLFG
Trigger: CCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGC...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGTATGGATGTCTGAGGTaGGATGCCATCAGGCCTGCT +
Preference number: 4 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLYGCLR*DAIRPA
Trigger: AGCAGGCCTGATGGCATCCCACCTCAGACATCCATA...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
3UTR CAA 72 bp GATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATaGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: DGFSCPSLKLWS*ELPKPMANSSQ
Trigger: CTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCACAAGTGGGCAGAAGTaGCCCGGAGAAAGCACTCCT +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACTSGQK*PGESTP
Trigger: AGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGT...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATAGTTCTTTCACACTGGTaGATGGGGTCAGTACTGCAA +
Preference number: 4 (lower is better)
Translates to: ASGKRLGDGRLAGRHFYIVLSHW*MGSVLQ
Trigger: TTGCAGTACTGACCCCATTCACCAGTGTGAAAGAAC...TATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAACAGGCAGAATCTGCTaGCTGCTCTTCCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: DGFSCPSLKLWSLELPKPTGRIC*LLFLVL
Trigger: CAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGT...TGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCTGGGATATGGATGTCTaGGGTGGGATGCCATCAGGC +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACWDMDV*GGMPSG
Trigger: GCCTGATGGCATCCCACCTCAGACATCCATATCCCA...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCCCTCCTCTGTGGCACTaGTGCAGTTCCTTTGGGTAC +
Preference number: 4 (lower is better)
Translates to: AHVRVYALKFLDRYSASLPPLWH*CSSFGY
Trigger: GTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGG...GAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR TCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCCCTCCTCTGTGGCACTaGTGCAGTTCCTTTGGGTAC +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACPPLWH*CSSFGY
Trigger: GTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGG...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAACACCCCCAAGTCCCTaGAAGGGACATACCAACATG +
Preference number: 4 (lower is better)
Translates to: DGFSCPSLKLWSLELPKPTPPSP*KGHTNM
Trigger: CATGTTGGTATGTCCCTTGCAGGGACTTGGGGGTGT...TGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCACTTGTGCGATACAGCTaGACAGAACTCAGACAGCTG +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPLVRYS*TELRQL
Trigger: CAGCTGTCTGAGTTCTGTGCAGCTGTATCGCACAAG...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAGACACTGGTTCTCCTTaGGTTTCAGTCTCGGACTCT +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPDTGSP*VSVSDS
Trigger: AGAGTCCGAGACTGAAACCCAAGGAGAACCAGTGTC...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACCTTGATACAGCACTaGAACTCCTCCTCGGAGTCA +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPTLIQH*NSSSES
Trigger: TGACTCCGAGGAGGAGTTCCAGTGCTGTATCAAGGT...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCACTAATAGGTACAGGGTaGACAACGTCAGCAACAGGG +
Preference number: 4 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPLIGTG*TTSATG
Trigger: CCCTGTTGCTGACGTTGTCCACCCTGTACCTATTAG...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGGATATGGACCAGCTTaGGTGACAGTGTTTTCTGCA +
Preference number: 4 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLGYGPA*VTVFSA
Trigger: TGCAGAAAACACTGTCACTCAAGCTGGTCCATATCC...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGGTTCTTTCACACTGGTaGATGGGGTCAGTACTGCAA +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLVLSHW*MGSVLQ
Trigger: TTGCAGTACTGACCCCATTCACCAGTGTGAAAGAAC...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR TCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCACAGGCAGAATCTGCTaGCTGCTCTTCCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACTGRIC*LLFLVL
Trigger: CAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGT...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTCAGGGACAAAACCTTaGCATCAAGCAGGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLSGTKP*HQAGSH
Trigger: ATGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGA...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCCTATGGCTGGAGGGCTaGATACAGTCTCCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACLWLEG*IQSPGS
Trigger: AGAACCTGGAGACTGTATGCAGCCCTCCAGCCATAG...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp GATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGTGCTCTTCCTGGTTCTaGTCTCTATTCGGGACTTCC +
Preference number: 4 (lower is better)
Translates to: DSLVLLLSCGHWSFPSQWCSSWF*SLFGTS
Trigger: GGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCA...CCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCGTACGAGGCAGAGACTaGAATACACCAGTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACVRGRD*NTPVSS
Trigger: GGAGCTCACTGGTGTATTGCAGTCTCTGCCTCGTAC...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATATGCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGAATCTGGCCCCCTGTaGGTCCTTGTTTGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: ICTCACICIEISGQVQCFESGPL*VLVCPR
Trigger: CCTGGGGCAAACAAGGACCCACAGGGGGCCAGATTC...GAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGCATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CCA 90 bp GTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCAAGAGGCTGTCCGGAGTCCAATaGAGAACAACTCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: VRVYALKFLDRYSASLKRLSGVQ*RTTLPR
Trigger: CCTGGGAAGAGTTGTTCTCCATTGGACTCCGGACAG...CCTCTTGAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR GCA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCGCAGAATCTGCTGACTaGTCTTCCTGGTTCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LIPESKCWRNVCTDHLACAESAD*SSWFCS
Trigger: AGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGC...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR GCA 90 bp AACAAAACAGAAGTAGGTGAGATTACTTTGAGAGCCTCTGAACAGGCCTGTCTGAAACTGGGGCACCTCTaGAGAAGGGTCTTTTCCCAG +
Preference number: 4 (lower is better)
Translates to: NKTEVGEITLRASEQACLKLGHL*RRVFSQ
Trigger: CTGGGAAAAGACCCTTCTGCAGAGGTGCCCCAGTTT...CAGACAGGCCTGTTCAGAGGCTCTCAAAGTAATCTCACCTACTTCTGTTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CCA 90 bp ATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAAGACACTGGTTCTCCTTaGGTTTCAGTCTCGGACTCT +
Preference number: 4 (lower is better)
Translates to: MDSLVLLLSCGHWSFPSQDTGSP*VSVSDS
Trigger: AGAGTCCGAGACTGAAACCCAAGGAGAACCAGTGTC...TTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CCA 90 bp ATATGCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCAGGTCCAGAGCCTCCTaGGTTACTGTCCGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: ICTCACICIEISGQVQCFRSRAS*VTVRSP
Trigger: TGGACTCCGGACAGTAACCCAGGAGGCTCTGGACCT...GAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CCA 90 bp GCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCCAATCTGGACTCCTCTaGCTTGAACTCACAGCTACA +
Preference number: 4 (lower is better)
Translates to: AHVRVYALKFLDRYSASLQSGLL*LELTAT
Trigger: TGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTG...GAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS GCA 90 bp CTGCCCACTCCAGACGAAGGCTCTGGCCTGCGAGGCCGAGCTCCATaGCACTCAGGTCCTGCAGAGCAATGGCCAGGGTGGGCTGGAGCC +
Preference number: 5 (lower is better)
Translates to: LPTPDEGSGLRGRAP*HSGPAEQWPGWAGA
Trigger: GGCTCCAGCCCACCCTGGCCATTGCTCTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGTCTGGAGTGGGCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp GTGCTAAGAGGGGAGCTCCCCATGGTCTCCAGGTGGCTCCTGTACTaGAGCCAGTCACAGCCAAACCGCTCCCGGAAGCTGGCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: VLRGELPMVSRWLLY*SQSQPNRSRKLASS
Trigger: GCTGCTGGCCAGCTTCCGGGAGCGGTTTGGCTGTGACTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGGGAGCTCCCCTCTTAGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp AACCGCTCCCGGAAGCTGGCCAGCAGCTCCAGTTCCCGGTGTTGTTaGACAAACCACCCAGCTGGGGAGGGGTCCAGAGTTCGGAGCTCT +
Preference number: 5 (lower is better)
Translates to: NRSRKLASSSSSRCC*TNHPAGEGSRVRSS
Trigger: AGAGCTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAACAACACCGGGAACTGGAGCTGCTGGCCAGCTTCCGGGAGCGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp GGCCAGCAGCTCCAGTTCCCGGTGTTGTTGCACAAACCACCCAGCTaGGGAGGGGTCCAGAGTTCGGAGCTCTGGGTCTGTGTCACTGGG +
Preference number: 5 (lower is better)
Translates to: GQQLQFPVLLHKPPS*GGVQSSELWVCVTG
Trigger: CCCAGTGACACAGACCCAGAGCTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAACAACACCGGGAACTGGAGCTGCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp CCCCTCACCCTCCCAGCAGACCAGACAGGGCATCGCCTGGGAGAAACCAACCCCAAAGCACTCCTTGCCTaGCACACCCCCAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: PLTLPADQTGHRLGETNPKALLA*HTPKSL
Trigger: CAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTT...GGGGTTGGTTTCTCCCAGGCGATGCCCTGTCTGGTCTGCTGGGAGGGTGAGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS TCA 90 bp CTTGCCATCAAGCAGGAAGCCATGAGCAGCATCCCTGGCCCGTGGTaGCAAGTACTGGGCGGTGGCTGCACGGTGTGCAGGGTGGAACCA +
Preference number: 5 (lower is better)
Translates to: LAIKQEAMSSIPGPW*QVLGGGCTVCRVEP
Trigger: TGGTTCCACCCTGCACACCGTGCAGCCACCGCCCAGTACTTGTCACCACGGGCCAGGGATGCTGCTCATGGCTTCCTGCTTGATGGCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp TGCCCCAGGCTGCTGTTCTTTCACACTGGTGAATGGGGTCAGTACTaGAAGCAGCTCCTGGACGGCTTCACGGGCCTCCGGCTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: CPRLLFFHTGEWGQY*KQLLDGFTGLRLQH
Trigger: GTGCTGGAGCCGGAGGCCCGTGAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp TTGCACAAACCACCCAGCTGGGGAGGGGTCCAGAGTTCGGAGCTCTaGGTCTGTGTCACTGGGCTCAGAGATGCTAGCCCGCCTCACACG +
Preference number: 5 (lower is better)
Translates to: LHKPPSWGGVQSSEL*VCVTGLRDASPPHT
Trigger: CGTGTGAGGCGGGCTAGCATCTCTGAGCCCAGTGACACAGACCCAGAGCTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp GGAGTCTTGGTGGTGCTAAGAGGGGAGCTCCCCATGGTCTCCAGGTaGCTCCTGTACTGCAGCCAGTCACAGCCAAACCGCTCCCGGAAG +
Preference number: 5 (lower is better)
Translates to: GVLVVLRGELPMVSR*LLYCSQSQPNRSRK
Trigger: CTTCCGGGAGCGGTTTGGCTGTGACTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGGGAGCTCCCCTCTTAGCACCACCAAGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAGCCCCCTGTGGGTCCTaGTTTGCCCCAGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSAPCGS*FAPGCC
Trigger: ACAGCAGCCTGGGGCAAACAAGGACCCACAGGGGGC...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp GCAGGTTCTTTAGCTGCTCCAGGCCCTGAAGGCTGCGGAGCTCATTaGCCCTCAGTATCAAAGTCCCCAGCGCAGCCCCTGATGGTCCCA +
Preference number: 5 (lower is better)
Translates to: AGSLAAPGPEGCGAH*PSVSKSPAQPLMVP
Trigger: TGGGACCATCAGGGGCTGCGCTGGGGACTTTGATACTGAGGGCCAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCTAAAGAACCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp AGCCATGAGCAGCATCCCTGGCCCGTGGTGACAAGTACTGGGCGGTaGCTGCACGGTGTGCAGGGTGGAACCACAAAGGGTTACCTTCCA +
Preference number: 5 (lower is better)
Translates to: SHEQHPWPVVTSTGR*LHGVQGGTTKGYLP
Trigger: TGGAAGGTAACCCTTTGTGGTTCCACCCTGCACACCGTGCAGCCACCGCCCAGTACTTGTCACCACGGGCCAGGGATGCTGCTCATGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp GGGACAAAACCTTGCCATCAAGCAGGAAGCCATGAGCAGCATCCCTaGCCCGTGGTGACAAGTACTGGGCGGTGGCTGCACGGTGTGCAG +
Preference number: 5 (lower is better)
Translates to: GTKPCHQAGSHEQHP*PVVTSTGRWLHGVQ
Trigger: CTGCACACCGTGCAGCCACCGCCCAGTACTTGTCACCACGGGCCAGGGATGCTGCTCATGGCTTCCTGCTTGATGGCAAGGTTTTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp CCTGGGCCCCATGGCCCCAGGTACAGTTCAAACACTCTGTTCAGCTaGTGCAGTGTGGCTGTCAGCAGGCTCAGTGTGCTACAGCCAGAG +
Preference number: 5 (lower is better)
Translates to: PGPHGPRYSSNTLFS*CSVAVSRLSVLQPE
Trigger: CTCTGGCTGTAGCACACTGAGCCTGCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACTGTACCTGGGGCCATGGGGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp CTGCAAGGGACATACCAACATGGGGCGACAGAGCTCAGCTTCCACTaGCTTCTGCTCCTGCTCCTCCTCCTCCTCCAGGTCCTCTCTCGA +
Preference number: 5 (lower is better)
Translates to: LQGTYQHGATELSFH*LLLLLLLLLQVLSR
Trigger: TCGAGAGAGGACCTGGAGGAGGAGGAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTCTGTCGCCCCATGTTGGTATGTCCCTTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp GGCACCTCTGCAGAAGGGTCTTTTCCCAGCAATGGCCAGAGCCGATaGTGCGGGGTCACCTCCTCCTCTGTGGCACTGATGCAGTTCCTT +
Preference number: 5 (lower is better)
Translates to: GTSAEGSFPSNGQSR*CGVTSSSVALMQFL
Trigger: AAGGAACTGCATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGACCCTTCTGCAGAGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp GGAGCCCCGGGGAATGGACCTGAGCCCTCAGACACTGGTTCTCCTTaGGTTTCAGTCTCGGACTCTAGCTCAGCTGCCACCAGACTCTGT +
Preference number: 5 (lower is better)
Translates to: GAPGNGPEPSDTGSP*VSVSDSSSAATRLC
Trigger: ACAGAGTCTGGTGGCAGCTGAGCTAGAGTCCGAGACTGAAACCCAAGGAGAACCAGTGTCTGAGGGCTCAGGTCCATTCCCCGGGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp GGTCATGGGATATGGATGTCTGAGGTGGGATGCCATCAGGCCTGCTaGGACAGCCACCGTGGTCAGCGAGGTCACAGGCAGAATCTGCTG +
Preference number: 5 (lower is better)
Translates to: GHGIWMSEVGCHQAC*DSHRGQRGHRQNLL
Trigger: CAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAGCAGGCCTGATGGCATCCCACCTCAGACATCCATATCCCATGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp TCCCAAGCCAATGGCCAACAGCAGCCAGGCAAGCAGCCAGACCTAGAGACTAGGCTGATGGTCCCACTCTaGGCACCAAGCGCAGGTGGT +
Preference number: 5 (lower is better)
Translates to: SQANGQQQPGKQPDLETRLMVPL*APSAGG
Trigger: ACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAG...CCTAGTCTCTAGGTCTGGCTGCTTGCCTGGCTGCTGTTGGCCATTGGCTTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp GCGGAGCTCATTGGCCCTCAGTATCAAAGTCCCCAGCGCAGCCCCTaGTGGTCCCACTCTTGGCACCAAGCGCAGGTGGTTATAGGAGAT +
Preference number: 5 (lower is better)
Translates to: AELIGPQYQSPQRSP*WSHSWHQAQVVIGD
Trigger: ATCTCCTATAACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAGGGGCTGCGCTGGGGACTTTGATACTGAGGGCCAATGAGCTCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp CCTGTGGGTCCTTGTTTGCCCCAGGCTGCTGTTCTTTCACACTGGTaGATGGGGTCAGTACTGCAAGCAGCTCCTGGACGGCTTCACGGG +
Preference number: 5 (lower is better)
Translates to: PVGPCLPQAAVLSHW*MGSVLQAAPGRLHG
Trigger: CCCGTGAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGGACCCACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp GCTGGGACAGCCACCGTGGTCAGCGAGGTCACAGGCAGAATCTGCTaGCTGCTCTTCCTGGTTCTGCTCTCTATTCGGGACTTCCCCAGA +
Preference number: 5 (lower is better)
Translates to: AGTATVVSEVTGRIC*LLFLVLLSIRDFPR
Trigger: TCTGGGGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp ATGGCCAGAGCCGATGCTGCGGGGTCACCTCCTCCTCTGTGGCACTaGTGCAGTTCCTTTGGGTACGAGGCAGAGACTGCAATACACCAG +
Preference number: 5 (lower is better)
Translates to: MARADAAGSPPPLWH*CSSFGYEAETAIHQ
Trigger: CTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCATCGGCTCTGGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp CGGAGGCCACACAGGCTGTGGATAGGGACTCCTCGAAGCTCCAGCTaGCGTAGGGACTTGAAGGGGAAAATCTTGATAGGCCCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: RRPHRLWIGTPRSSS*RRDLKGKILIGPGR
Trigger: CCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCTTCGAGGAGTCCCTATCCACAGCCTGTGTGGCCTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp CACCACAGGCTGACAAGAGCTCCTCCAGTGCCTGGATGCTTCTGTTaGAAACCAGGGACTCCAGCTGTGAGTAGATGCCACGGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: HHRLTRAPPVPGCFC*KPGTPAVSRCHGGH
Trigger: GTGGCCTCCGTGGCATCTACTCACAGCTGGAGTCCCTGGTTTGCAACAGAAGCATCCAGGCACTGGAGGAGCTCTTGTCAGCCTGTGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp GTGACCCGGAGAAAGCACTCCTTGCCTTGCACACCCCCAAGTCCCTaGAAGGGACATACCAACATGGGGCGACAGAGCTCAGCTTCCACT +
Preference number: 5 (lower is better)
Translates to: VTRRKHSLPCTPPSP*KGHTNMGRQSSAST
Trigger: AGTGGAAGCTGAGCTCTGTCGCCCCATGTTGGTATGTCCCTTGCAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp CTGAGGAGAGGCTATCACTCAACTCAGGGCCACCTGAGGTTTCAGTaGTACTCCCCACTGGCCAGGACAGAGGCTGGATCACGGGACCAA +
Preference number: 5 (lower is better)
Translates to: LRRGYHSTQGHLRFQ*YSPLARTEAGSRDQ
Trigger: TTGGTCCCGTGATCCAGCCTCTGTCCTGGCCAGTGGGGAGTACCACTGAAACCTCAGGTGGCCCTGAGTTGAGTGATAGCCTCTCCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp TGGGTCCTTGTTTGCCCCAGGCTGCTGTTCTTTCACACTGGTGAATaGGGTCAGTACTGCAAGCAGCTCCTGGACGGCTTCACGGGCCTC +
Preference number: 5 (lower is better)
Translates to: WVLVCPRLLFFHTGE*GQYCKQLLDGFTGL
Trigger: GAGGCCCGTGAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGGACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp CCGGAGTCGGTGGTCCACAGAGCGAAAACCAGAGCATCCAGGGGATaGGCTGAGACTCCAGCTGCTACGGTCATGGGATATGGATGTCTG +
Preference number: 5 (lower is better)
Translates to: PESVVHRAKTRASRG*AETPAATVMGYGCL
Trigger: CAGACATCCATATCCCATGACCGTAGCAGCTGGAGTCTCAGCCCATCCCCTGGATGCTCTGGTTTTCGCTCTGTGGACCACCGACTCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp TCGGAGTCACTGAACACCTCGACATCCAGGAAGAGCCGGAGTCGGTaGTCCACAGAGCGAAAACCAGAGCATCCAGGGGATGGGCTGAGA +
Preference number: 5 (lower is better)
Translates to: SESLNTSTSRKSRSR*STERKPEHPGDGLR
Trigger: TCTCAGCCCATCCCCTGGATGCTCTGGTTTTCGCTCTGTGGACCACCGACTCCGGCTCTTCCTGGATGTCGAGGTGTTCAGTGACTCCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp GTCGGTGGTCCACAGAGCGAAAACCAGAGCATCCAGGGGATGGGCTaGGACTCCAGCTGCTACGGTCATGGGATATGGATGTCTGAGGTG +
Preference number: 5 (lower is better)
Translates to: VGGPQSENQSIQGMG*DSSCYGHGIWMSEV
Trigger: CACCTCAGACATCCATATCCCATGACCGTAGCAGCTGGAGTCTCAGCCCATCCCCTGGATGCTCTGGTTTTCGCTCTGTGGACCACCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp GGACAGCCACCGTGGTCAGCGAGGTCACAGGCAGAATCTGCTGACTaGTCTTCCTGGTTCTGCTCTCTATTCGGGACTTCCCCAGACACA +
Preference number: 5 (lower is better)
Translates to: GQPPWSARSQAESAD*SSWFCSLFGTSPDT
Trigger: TGTGTCTGGGGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGCTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp AGAGACTGCAATACACCAGTGAGCTCCTCAAGGAAGGCTCGGCACTaGCTAGCATCTCGGGGCAGTAGTACACAGCTGCCAGTGCCAGCT +
Preference number: 5 (lower is better)
Translates to: RDCNTPVSSSRKARH*LASRGSSTQLPVPA
Trigger: AGCTGGCACTGGCAGCTGTGTACTACTGCCCCGAGATGCTAGGCAGTGCCGAGCCTTCCTTGAGGAGCTCACTGGTGTATTGCAGTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp AGCCGCTCCAGAGTCCGAGCTGCTTGGAGTTCCACTTCAAACAAGTaGGCAGAAGTGACCCGGAGAAAGCACTCCTTGCCTTGCACACCC +
Preference number: 5 (lower is better)
Translates to: SRSRVRAAWSSTSNK*AEVTRRKHSLPCTP
Trigger: GGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGAACTCCAAGCAGCTCGGACTCTGGAGCGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp TGTTCTTTCACACTGGTGAATGGGGTCAGTACTGCAAGCAGCTCCTaGACGGCTTCACGGGCCTCCGGCTCCAGCACAGCATATCGACGT +
Preference number: 5 (lower is better)
Translates to: CSFTLVNGVSTASSS*TASRASGSSTAYRR
Trigger: ACGTCGATATGCTGTGCTGGAGCCGGAGGCCCGTGAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp TGCTGCGGGGTCACCTCCTCCTCTGTGGCACTGATGCAGTTCCTTTaGGTACGAGGCAGAGACTGCAATACACCAGTGAGCTCCTCAAGG +
Preference number: 5 (lower is better)
Translates to: CCGVTSSSVALMQFL*VRGRDCNTPVSSSR
Trigger: CCTTGAGGAGCTCACTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGCAGACAGCTGAGTGGTaGCTGCTCCCTGACCTGCAG +
Preference number: 5 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARQTAEW*LLPDLQ
Trigger: CTGCAGGTCAGGGAGCAGCAACCACTCAGCTGTCTG...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp GAGTCCGAGCTGCTTGGAGTTCCACTTCAAACAAGTGGGCAGAAGTaGCCCGGAGAAAGCACTCCTTGCCTTGCACACCCCCAAGTCCCT +
Preference number: 5 (lower is better)
Translates to: ESELLGVPLQTSGQK*PGESTPCLAHPQVP
Trigger: AGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGAACTCCAAGCAGCTCGGACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp TCAAACAAGTGGGCAGAAGTGACCCGGAGAAAGCACTCCTTGCCTTaGACACCCCCAAGTCCCTGCAAGGGACATACCAACATGGGGCGA +
Preference number: 5 (lower is better)
Translates to: SNKWAEVTRRKHSLP*TPPSPCKGHTNMGR
Trigger: TCGCCCCATGTTGGTATGTCCCTTGCAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp GCTACAACGCAGACACTGGAATCTGGCCCCCTGTGGGTCCTTGTTTaGCCCAGGCTGCTGTTCTTTCACACTGGTGAATGGGGTCAGTAC +
Preference number: 5 (lower is better)
Translates to: ATTQTLESGPLWVLV*PRLLFFHTGEWGQY
Trigger: GTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGGACCCACAGGGGGCCAGATTCCAGTGTCTGCGTTGTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGCCCCCTGTGGGTCCTaGTTTGCCCCAGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: VTQGPDGFSCPSLKLWSLAPCGS*FAPGCC
Trigger: ACAGCAGCCTGGGGCAAACAAGGACCCACAGGGGGC...CAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GCAGTACCAGAGGACAGCTATTCCAAGGGCACTTCCCATTGGCCAGCCAGTCCTCTGGACTCCTCTGGCTaGAACTCACAGCTACAACGC +
Preference number: 5 (lower is better)
Translates to: AVPEDSYSKGTSHWPASPLDSSG*NSQLQR
Trigger: GCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAG...AGGACTGGCTGGCCAATGGGAAGTGCCCTTGGAATAGCTGTCCTCTGGTACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS TCA 90 bp TCCAGCCTTCATCACTCTCCAGTCCCAATCTGGACTCCTCTGGCTTaGACTCACAGCTACAACGCAGACACTGGAATCTGGCCCCCTGTG +
Preference number: 5 (lower is better)
Translates to: SSLHHSPVPIWTPLA*THSYNADTGIWPPV
Trigger: CACAGGGGGCCAGATTCCAGTGTCTGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTGGGACTGGAGAGTGATGAAGGCTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp TCAGCGAGGTCACAGGCAGAATCTGCTGACTGCTCTTCCTGGTTCTaGTCTCTATTCGGGACTTCCCCAGACACAGCTAGGAGAACCACG +
Preference number: 5 (lower is better)
Translates to: SARSQAESADCSSWF*SLFGTSPDTARRTT
Trigger: CGTGGTTCTCCTAGCTGTGTCTGGGGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGTGACCTCGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 90 bp TCCTCTGTGGCACTGATGCAGTTCCTTTGGGTACGAGGCAGAGACTaGAATACACCAGTGAGCTCCTCAAGGAAGGCTCGGCACTGCCTA +
Preference number: 5 (lower is better)
Translates to: SSVALMQFLWVRGRD*NTPVSSSRKARHCL
Trigger: TAGGCAGTGCCGAGCCTTCCTTGAGGAGCTCACTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp ATGGCCCCAGGTACAGTTCAAACACTCTGTTCAGCTGCTGCAGTGTaGCTGTCAGCAGGCTCAGTGTGCTACAGCCAGAGAGAACCGCAT +
Preference number: 5 (lower is better)
Translates to: MAPGTVQTLCSAAAV*LSAGSVCYSQREPH
Trigger: ATGCGGTTCTCTCTGGCTGTAGCACACTGAGCCTGCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACTGTACCTGGGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp AGCATGTGGTTAGACACAACCACAAGGCACGGAAACTCCTCCGTGTaGCCTGCTAACACCACTGGCACCTTGATACAGCACTGGAACTCC +
Preference number: 5 (lower is better)
Translates to: SMWLDTTTRHGNSSV*PANTTGTLIQHWNS
Trigger: GGAGTTCCAGTGCTGTATCAAGGTGCCAGTGGTGTTAGCAGGCCACACGGAGGAGTTTCCGTGCCTTGTGGTTGTGTCTAACCACATGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GCAGTACCAGAGGACAGCTATTCCAAGGGCACTTCCCATTGGCCAGCCAGTCCTTTGAAGGGGAAAATCTaGATAGGCCCTGGAAGGCCA +
Preference number: 5 (lower is better)
Translates to: AVPEDSYSKGTSHWPASPLKGKI*IGPGRP
Trigger: TGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAA...AGGACTGGCTGGCCAATGGGAAGTGCCCTTGGAATAGCTGTCCTCTGGTACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CAA 90 bp GCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTACATCAGGGTCAAGCTGCCGTAGGGACTaGAAGGGGAAAATCTTGATA +
Preference number: 5 (lower is better)
Translates to: ARPLDRSQPAWGLGTSGSSCRRD*KGKILI
Trigger: TATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCT...TGACCCTGATGTACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATGCCTGGATGCTTCTGTaGCAAACCAGGGACTCCAGC +
Preference number: 5 (lower is better)
Translates to: CFREEIRGWQACWETFLHAWMLL*QTRDSS
Trigger: GCTGGAGTCCCTGGTTTGCAACAGAAGCATCCAGGC...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp CTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAACAGCAGCCAGGAGACACTGGTTCTCCTaGGGTTTCAGTCTCGGACTC +
Preference number: 5 (lower is better)
Translates to: LLSCGHWSFPSQWPTAARRHWFS*GFSLGL
Trigger: GAGTCCGAGACTGAAACCCAAGGAGAACCAGTGTCT...CCTGGCTGCTGTTGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp TACAGCTCACATAAATCCATCAGGAAGCCTTTGCAGTCCTGGAGATaGTTGTGGCTCAGGTTGAGGAAGCGGAGAGCGGACAGGAGACGC +
Preference number: 5 (lower is better)
Translates to: YSSHKSIRKPLQSWR*LWLRLRKRRADRRR
Trigger: GCGTCTCCTGTCCGCTCTCCGCTTCCTCAACCTGAGCCACAATCATCTCCAGGACTGCAAAGGCTTCCTGATGGATTTATGTGAGCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp AGTGATCCCATGCAAGGCCACTGGATAGGTCGCAACCTGCTTGGGGACTGGGTAGGTCACTCCCACAGTTaGGACATACAACAGGAGATT +
Preference number: 5 (lower is better)
Translates to: SDPMQGHWIGRNLLGDWVGHSHS*DIQQEI
Trigger: AATCTCCTGTTGTATGTCCAAACTGTGGGAGTGACC...TACCCAGTCCCCAAGCAGGTTGCGACCTATCCAGTGGCCTTGCATGGGATCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp AGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATACTACCCATGACACCTGGAACACCACTGGCACCTaGATACAGCACTGGAACTCC +
Preference number: 5 (lower is better)
Translates to: RGWQACWETFLHTTHDTWNTTGT*IQHWNS
Trigger: GGAGTTCCAGTGCTGTATCAAGGTGCCAGTGGTGTT...CCAGGTGTCATGGGTAGTATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAAACACCACTGGCACCTaGATACAGCACTGGAACTCC +
Preference number: 5 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRNTTGT*IQHWNS
Trigger: GGAGTTCCAGTGCTGTATCAAGGTGCCAGTGGTGTT...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 90 bp AGAGGCTGGATCACGGGACCAAGCCCTGAAGAGTCTGAAGTTTGCTaGAGATCCTTCAGGGACAAAACCTTGCCATCAAGCAGGAAGCCA +
Preference number: 5 (lower is better)
Translates to: RGWITGPSPEESEVC*RSFRDKTLPSSRKP
Trigger: TGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGAAGGATCTTCAGCAAACTTCAGACTCTTCAGGGCTTGGTCCCGTGATCCAGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCGCTCCAGACAGCTGAGTGGTaGCTGCTCCCTGACCTGCAG +
Preference number: 5 (lower is better)
Translates to: AHVRVYALKFLDRYSASLQTAEW*LLPDLQ
Trigger: CTGCAGGTCAGGGAGCAGCAACCACTCAGCTGTCTG...GAGCGAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS-3UTR CAA 90 bp CCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGACCCTGTTTGAAGGGGAAAATCTaGATAGGCCCTGGAAGGCCA +
Preference number: 5 (lower is better)
Translates to: PGLHRKFQASQGYTVRPCLKGKI*IGPGRP
Trigger: TGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAA...ACAGGGTCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp TTGATACCTGAGAGTAAGTGCTGGAGAAATGTTTGCACTGACCACTTAGCCTGCAAAGCACTCCTTGCCTaGCACACCCCCAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: LIPESKCWRNVCTDHLACKALLA*HTPKSL
Trigger: CAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTT...GCAGGCTAAGTGGTCAGTGCAAACATTTCTCCAGCACTTACTCTCAGGTATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp TCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGCCAAGACACTGGTTCTCCTaGGGTTTCAGTCTCGGACTC +
Preference number: 5 (lower is better)
Translates to: SLVLLLSCGHWSFPSQWPRHWFS*GFSLGL
Trigger: GAGTCCGAGACTGAAACCCAAGGAGAACCAGTGTCT...TGGCCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp ATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAACTGGACTCCTCTGGCTaGAACTCACAGCTACAACGC +
Preference number: 5 (lower is better)
Translates to: MDSLVLLLSCGHWSFPSQLDSSG*NSQLQR
Trigger: GCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAG...TTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GGCCAGCCTGGTCTACACAGAAAGTTCCAGGCTAGCCAAGGTTACACAGTGAGAAGGAGATTCTGTATTTaGAAACAGAGGCTTCCAGCC +
Preference number: 5 (lower is better)
Translates to: GQPGLHRKFQASQGYTVRRRFCI*KQRLPA
Trigger: GGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCCT...TCTCACTGTGTAACCTTGGCTAGCCTGGAACTTTCTGTGTAGACCAGGCTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp TGCTTCCGGGAAGAGATTAGGGGATGGCAGGCTTGCTGGGAGACATTTCTACATGGTCACTCCCACAGTTaGGACATACAACAGGAGATT +
Preference number: 5 (lower is better)
Translates to: CFREEIRGWQACWETFLHGHSHS*DIQQEI
Trigger: AATCTCCTGTTGTATGTCCAAACTGTGGGAGTGACC...ATGTAGAAATGTCTCCCAGCAAGCCTGCCATCCCCTAATCTCTTCCCGGAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 90 bp TGCTCTCTATTCGGGACTTCCCCAGACACAGCTAGGAGAACCACGTaGTCACTCCCACAGTTTGGACATACAACAGGAGATTCTGTATTT +
Preference number: 5 (lower is better)
Translates to: CSLFGTSPDTARRTT*SLPQFGHTTGDSVF
Trigger: AAATACAGAATCTCCTGTTGTATGTCCAAACTGTGGGAGTGACCACGTGGTTCTCCTAGCTGTGTCTGGGGAAGTCCCGAATAGAGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAATGGTTCAGGGACAAAACCTaGCCATCAAGCAGGAAGCCA +
Preference number: 5 (lower is better)
Translates to: DSLVLLLSCGHWSFPSQWFRDKT*PSSRKP
Trigger: TGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGAA...CCATTGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp GATGGATTCTCTTGTCCTTCTCTTAAGCTGTGGTCATTGGAGCTTCCCAAGCCAAGCTGCCGTAGGGACTaGAAGGGGAAAATCTTGATA +
Preference number: 5 (lower is better)
Translates to: DGFSCPSLKLWSLELPKPSCRRD*KGKILI
Trigger: TATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCT...TGGCTTGGGAAGCTCCAATGACCACAGCTTAAGAGAAGGACAAGAGAATCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp ATTAGGCAGGTCACCCAAGGGCCAGATGGATTCTCTTGTCCTTCTCTTAAGCTGAGGAGATTCTGTATTTaGAAACAGAGGCTTCCAGCC +
Preference number: 5 (lower is better)
Translates to: IRQVTQGPDGFSCPSLKLRRFCI*KQRLPA
Trigger: GGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCCT...CAGCTTAAGAGAAGGACAAGAGAATCCATCTGGCCCTTGGGTGACCTGCCTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS-3UTR CAA 90 bp ATATGCACATGTGCGTGTATATGCATTGAAATTTCTGGACAGGTACAGTGCTTCTTCAGGGACAAAACCTaGCCATCAAGCAGGAAGCCA +
Preference number: 5 (lower is better)
Translates to: ICTCACICIEISGQVQCFFRDKT*PSSRKP
Trigger: TGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGAA...GAAGCACTGTACCTGTCCAGAAATTTCAATGCATATACACGCACATGTGCATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027414.16
CDS CCA 72 bp CTGCCAGTGCCAGCTGCCCACTCCAGACGAAGGCTCTaGCCTGCGAGGCCGAGCTCCATGCCACTCAGGTCC +
Preference number: 6 (lower is better)
Translates to: LPVPAAHSRRRL*PARPSSMPLRS
Trigger: GGACCTGAGTGGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGTCTGGAGTGGGCAGCTGGCACTGGCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CCAGACGAAGGCTCTGGCCTGCGAGGCCGAGCTCCATaGCACTCAGGTCCTGCAGAGCAATGGCCAGGGTGG +
Preference number: 6 (lower is better)
Translates to: PDEGSGLRGRAP*HSGPAEQWPGW
Trigger: CCACCCTGGCCATTGCTCTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGTCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp AGTGCCAGCTGCCCACTCCAGACGAAGGCTCTGGCCTaGGAGGCCGAGCTCCATGCCACTCAGGTCCTGCAG +
Preference number: 6 (lower is better)
Translates to: SASCPLQTKALA*EAELHATQVLQ
Trigger: CTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGTCTGGAGTGGGCAGCTGGCACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp GGGGAGCTCCCCATGGTCTCCAGGTGGCTCCTGTACTaGAGCCAGTCACAGCCAAACCGCTCCCGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: GELPMVSRWLLY*SQSQPNRSRKL
Trigger: CAGCTTCCGGGAGCGGTTTGGCTGTGACTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGGGAGCTCCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp GCCAAACCGCTCCCGGAAGCTGGCCAGCAGCTCCAGTTCCCGGTGTaGTTGCACAAACCACCCAGCTGGGGAGGGGTCCAGAGTTCGGAG +
Preference number: 6 (lower is better)
Translates to: AKPLPEAGQQLQFPV*LHKPPSWGGVQSSE
Trigger: CTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAACAACACCGGGAACTGGAGCTGCTGGCCAGCTTCCGGGAGCGGTTTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp GGGCGACAGAGCTCAGCTTCCACTGCCTTCTGCTCCTaGTCCTCCTCCTCCTCCAGGTCCTCTCTCGATCCC +
Preference number: 6 (lower is better)
Translates to: GRQSSASTAFCS*SSSSSRSSLDP
Trigger: GGGATCGAGAGAGGACCTGGAGGAGGAGGAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTCTGTCGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GGTGGGATGCCATCAGGCCTGCTGGGACAGCCACCGTaGTCAGCGAGGTCACAGGCAGAATCTGCTGACTGC +
Preference number: 6 (lower is better)
Translates to: GGMPSGLLGQPP*SARSQAESADC
Trigger: GCAGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAGCAGGCCTGATGGCATCCCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp AAACCGCTCCCGGAAGCTGGCCAGCAGCTCCAGTTCCCGGTGTTGTaGCACAAACCACCCAGCTGGGGAGGGGTCCAGAGTTCGGAGCTC +
Preference number: 6 (lower is better)
Translates to: KPLPEAGQQLQFPVL*HKPPSWGGVQSSEL
Trigger: GAGCTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAACAACACCGGGAACTGGAGCTGCTGGCCAGCTTCCGGGAGCGGTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp TTAGCTGCTCCAGGCCCTGAAGGCTGCGGAGCTCATTaGCCCTCAGTATCAAAGTCCCCAGCGCAGCCCCTG +
Preference number: 6 (lower is better)
Translates to: LAAPGPEGCGAH*PSVSKSPAQPL
Trigger: CAGGGGCTGCGCTGGGGACTTTGATACTGAGGGCCAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GTGGTGCTAAGAGGGGAGCTCCCCATGGTCTCCAGGTaGCTCCTGTACTGCAGCCAGTCACAGCCAAACCGC +
Preference number: 6 (lower is better)
Translates to: VVLRGELPMVSR*LLYCSQSQPNR
Trigger: GCGGTTTGGCTGTGACTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGGGAGCTCCCCTCTTAGCACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp ACACTGGTGAATGGGGTCAGTACTGCAAGCAGCTCCTaGACGGCTTCACGGGCCTCCGGCTCCAGCACAGCA +
Preference number: 6 (lower is better)
Translates to: TLVNGVSTASSS*TASRASGSSTA
Trigger: TGCTGTGCTGGAGCCGGAGGCCCGTGAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp GCCGATGCTGCGGGGTCACCTCCTCCTCTGTGGCACTaGTGCAGTTCCTTTGGGTACGAGGCAGAGACTGCA +
Preference number: 6 (lower is better)
Translates to: ADAAGSPPPLWH*CSSFGYEAETA
Trigger: TGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCATCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp GAAGGGTCTTTTCCCAGCAATGGCCAGAGCCGATGCTaGGGGGTCACCTCCTCCTCTGTGGCACTGATGCAG +
Preference number: 6 (lower is better)
Translates to: EGSFPSNGQSRC*GVTSSSVALMQ
Trigger: CTGCATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGACCCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp GCAGAAGGGTCTTTTCCCAGCAATGGCCAGAGCCGATaGTGCGGGGTCACCTCCTCCTCTGTGGCACTGATG +
Preference number: 6 (lower is better)
Translates to: AEGSFPSNGQSR*CGVTSSSVALM
Trigger: CATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGACCCTTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CGATACAGCTGCACAGAACTCAGACAGCTGAGTGGTTaGTGCTCCCTGACCTGCAGGGAAGGACCTGGCCCC +
Preference number: 6 (lower is better)
Translates to: RYSCTELRQLSG*CSLTCREGPGP
Trigger: GGGGCCAGGTCCTTCCCTGCAGGTCAGGGAGCAGCAACCACTCAGCTGTCTGAGTTCTGTGCAGCTGTATCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp ACACGGACTCGGCTCTTAACCTTACGAAGCGGGGCCTaGGCCACAATGCCCCCTGAGGAGAGGCTATCACTC +
Preference number: 6 (lower is better)
Translates to: TRTRLLTLRSGA*ATMPPEERLSL
Trigger: GAGTGATAGCCTCTCCTCAGGGGGCATTGTGGCCCAGGCCCCGCTTCGTAAGGTTAAGAGCCGAGTCCGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp GCGATACAGCTGCACAGAACTCAGACAGCTGAGTGGTaGCTGCTCCCTGACCTGCAGGGAAGGACCTGGCCC +
Preference number: 6 (lower is better)
Translates to: AIQLHRTQTAEW*LLPDLQGRTWP
Trigger: GGGCCAGGTCCTTCCCTGCAGGTCAGGGAGCAGCAACCACTCAGCTGTCTGAGTTCTGTGCAGCTGTATCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp AGCCTTTGCAGTCCTGGAGATGATTGTGGCTCAGGTTaGGGAAGCGGAGAGCGGACAGGAGACGCAGGGAGC +
Preference number: 6 (lower is better)
Translates to: SLCSPGDDCGSG*GSGERTGDAGS
Trigger: GCTCCCTGCGTCTCCTGTCCGCTCTCCGCTTCCTCAACCTGAGCCACAATCATCTCCAGGACTGCAAAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp ATTGGCCCTCAGTATCAAAGTCCCCAGCGCAGCCCCTaGTGGTCCCACTCTTGGCACCAAGCGCAGGTGGTT +
Preference number: 6 (lower is better)
Translates to: IGPQYQSPQRSP*WSHSWHQAQVV
Trigger: AACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAGGGGCTGCGCTGGGGACTTTGATACTGAGGGCCAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp CAGGGAAGGACCTGGCCCCAGAGAAGCAGGCTGCTCTaGGGTTTCATCAGACACCACTGGGAGAGGAGACTC +
Preference number: 6 (lower is better)
Translates to: QGRTWPQRSRLL*GFIRHHWERRL
Trigger: GAGTCTCCTCTCCCAGTGGTGTCTGATGAAACCTCAGAGCAGCCTGCTTCTCTGGGGCCAGGTCCTTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp GCCGCAGGTTCTTTAGCTGCTCCAGGCCCTGAAGGCTaGGGAGCTCATTGGCCCTCAGTATCAAAGTCCCCA +
Preference number: 6 (lower is better)
Translates to: AAGSLAAPGPEG*GAHWPSVSKSP
Trigger: TGGGGACTTTGATACTGAGGGCCAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCTAAAGAACCTGCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp ACATACCAACATGGGGCGACAGAGCTCAGCTTCCACTaGCTTCTGCTCCTGCTCCTCCTCCTCCTCCAGGTC +
Preference number: 6 (lower is better)
Translates to: TYQHGATELSFH*LLLLLLLLLQV
Trigger: GACCTGGAGGAGGAGGAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTCTGTCGCCCCATGTTGGTATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CTGCTGTTCTTTCACACTGGTGAATGGGGTCAGTACTaGAAGCAGCTCCTGGACGGCTTCACGGGCCTCCGG +
Preference number: 6 (lower is better)
Translates to: LLFFHTGEWGQY*KQLLDGFTGLR
Trigger: CCGGAGGCCCGTGAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GGTCCAGAGCCTCCTGGGTTACTGTCCGGAGTCCAATaGAGAACAACTCTTCCCAGGGCTCCCGAATCCAGG +
Preference number: 6 (lower is better)
Translates to: GPEPPGLLSGVQ*RTTLPRAPESR
Trigger: CCTGGATTCGGGAGCCCTGGGAAGAGTTGTTCTCCATTGGACTCCGGACAGTAACCCAGGAGGCTCTGGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp AGGCTGTGGATAGGGACTCCTCGAAGCTCCAGCTGCCGTAGGGACTaGAAGGGGAAAATCTTGATAGGCCCTGGAAGGCCAACACCAGGG +
Preference number: 6 (lower is better)
Translates to: RLWIGTPRSSSCRRD*KGKILIGPGRPTPG
Trigger: CCCTGGTGTTGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCTTCGAGGAGTCCCTATCCACAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp GCCACCGTGGTCAGCGAGGTCACAGGCAGAATCTGCTaGCTGCTCTTCCTGGTTCTGCTCTCTATTCGGGAC +
Preference number: 6 (lower is better)
Translates to: ATVVSEVTGRIC*LLFLVLLSIRD
Trigger: GTCCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp TCCCCACCACAGGCTGACAAGAGCTCCTCCAGTGCCTaGATGCTTCTGTTGCAAACCAGGGACTCCAGCTGT +
Preference number: 6 (lower is better)
Translates to: SPPQADKSSSSA*MLLLQTRDSSC
Trigger: ACAGCTGGAGTCCCTGGTTTGCAACAGAAGCATCCAGGCACTGGAGGAGCTCTTGTCAGCCTGTGGTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GGCTATCACTCAACTCAGGGCCACCTGAGGTTTCAGTaGTACTCCCCACTGGCCAGGACAGAGGCTGGATCA +
Preference number: 6 (lower is better)
Translates to: GYHSTQGHLRFQ*YSPLARTEAGS
Trigger: TGATCCAGCCTCTGTCCTGGCCAGTGGGGAGTACCACTGAAACCTCAGGTGGCCCTGAGTTGAGTGATAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GGGAATGGACCTGAGCCCTCAGACACTGGTTCTCCTTaGGTTTCAGTCTCGGACTCTAGCTCAGCTGCCACC +
Preference number: 6 (lower is better)
Translates to: GNGPEPSDTGSP*VSVSDSSSAAT
Trigger: GGTGGCAGCTGAGCTAGAGTCCGAGACTGAAACCCAAGGAGAACCAGTGTCTGAGGGCTCAGGTCCATTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp CTGAACACCTCGACATCCAGGAAGAGCCGGAGTCGGTaGTCCACAGAGCGAAAACCAGAGCATCCAGGGGAT +
Preference number: 6 (lower is better)
Translates to: LNTSTSRKSRSR*STERKPEHPGD
Trigger: ATCCCCTGGATGCTCTGGTTTTCGCTCTGTGGACCACCGACTCCGGCTCTTCCTGGATGTCGAGGTGTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp TCAAAGTCCCCAGCGCAGCCCCTGATGGTCCCACTCTaGGCACCAAGCGCAGGTGGTTATAGGAGATGTCCA +
Preference number: 6 (lower is better)
Translates to: SKSPAQPLMVPL*APSAGGYRRCP
Trigger: TGGACATCTCCTATAACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAGGGGCTGCGCTGGGGACTTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp CAACGCAGACACTGGAATCTGGCCCCCTGTGGGTCCTaGTTTGCCCCAGGCTGCTGTTCTTTCACACTGGTG +
Preference number: 6 (lower is better)
Translates to: QRRHWNLAPCGS*FAPGCCSFTLV
Trigger: CACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGGACCCACAGGGGGCCAGATTCCAGTGTCTGCGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp TTCAAACAAGTGGGCAGAAGTGACCCGGAGAAAGCACTCCTTGCCTaGCACACCCCCAAGTCCCTGCAAGGGACATACCAACATGGGGCG +
Preference number: 6 (lower is better)
Translates to: FKQVGRSDPEKALLA*HTPKSLQGTYQHGA
Trigger: CGCCCCATGTTGGTATGTCCCTTGCAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp ATGCTGCGGGGTCACCTCCTCCTCTGTGGCACTGATGCAGTTCCTTaGGGTACGAGGCAGAGACTGCAATACACCAGTGAGCTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: MLRGHLLLCGTDAVP*GTRQRLQYTSELLK
Trigger: CTTGAGGAGCTCACTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGGAGGTGACCCCGCAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp CTGGATGCTTCTGTTGCAAACCAGGGACTCCAGCTGTaGGTAGATGCCACGGAGGCCACACAGGCTGTGGAT +
Preference number: 6 (lower is better)
Translates to: LDASVANQGLQL*VDATEATQAVD
Trigger: ATCCACAGCCTGTGTGGCCTCCGTGGCATCTACTCACAGCTGGAGTCCCTGGTTTGCAACAGAAGCATCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp TCGAGATGCCGCAGGTTCTTTAGCTGCTCCAGGCCCTaGAGGCTGCGGAGCTCATTGGCCCTCAGTATCAAA +
Preference number: 6 (lower is better)
Translates to: SRCRRFFSCSRP*RLRSSLALSIK
Trigger: TTTGATACTGAGGGCCAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCTAAAGAACCTGCGGCATCTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp CCTTGTTTGCCCCAGGCTGCTGTTCTTTCACACTGGTaGATGGGGTCAGTACTGCAAGCAGCTCCTGGACGG +
Preference number: 6 (lower is better)
Translates to: PCLPQAAVLSHW*MGSVLQAAPGR
Trigger: CCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CACCACAGGCTGACAAGAGCTCCTCCAGTGCCTGGATaGTTCTGTTGCAAACCAGGGACTCCAGCTGTGAGT +
Preference number: 6 (lower is better)
Translates to: HHRLTRAPPVPG*FCCKPGTPAVS
Trigger: ACTCACAGCTGGAGTCCCTGGTTTGCAACAGAAGCATCCAGGCACTGGAGGAGCTCTTGTCAGCCTGTGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CAGACACTGGAATCTGGCCCCCTGTGGGTCCTTGTTTaGCCCAGGCTGCTGTTCTTTCACACTGGTGAATGG +
Preference number: 6 (lower is better)
Translates to: QTLESGPLWVLV*PRLLFFHTGEW
Trigger: CCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGGACCCACAGGGGGCCAGATTCCAGTGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CCGTGGTCAGCGAGGTCACAGGCAGAATCTGCTGACTaGTCTTCCTGGTTCTGCTCTCTATTCGGGACTTCC +
Preference number: 6 (lower is better)
Translates to: PWSARSQAESAD*SSWFCSLFGTS
Trigger: GGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp AATACACCAGTGAGCTCCTCAAGGAAGGCTCGGCACTaGCTAGCATCTCGGGGCAGTAGTACACAGCTGCCA +
Preference number: 6 (lower is better)
Translates to: NTPVSSSRKARH*LASRGSSTQLP
Trigger: TGGCAGCTGTGTACTACTGCCCCGAGATGCTAGGCAGTGCCGAGCCTTCCTTGAGGAGCTCACTGGTGTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GTTTCAGTGGTACTCCCCACTGGCCAGGACAGAGGCTaGATCACGGGACCAAGCCCTGAAGAGTCTGAAGTT +
Preference number: 6 (lower is better)
Translates to: VSVVLPTGQDRG*ITGPSPEESEV
Trigger: AACTTCAGACTCTTCAGGGCTTGGTCCCGTGATCCAGCCTCTGTCCTGGCCAGTGGGGAGTACCACTGAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GTTTGCCCCAGGCTGCTGTTCTTTCACACTGGTGAATaGGGTCAGTACTGCAAGCAGCTCCTGGACGGCTTC +
Preference number: 6 (lower is better)
Translates to: VCPRLLFFHTGE*GQYCKQLLDGF
Trigger: GAAGCCGTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp ACAGCTACAACGCAGACACTGGAATCTGGCCCCCTGTaGGTCCTTGTTTGCCCCAGGCTGCTGTTCTTTCAC +
Preference number: 6 (lower is better)
Translates to: TATTQTLESGPL*VLVCPRLLFFH
Trigger: GTGAAAGAACAGCAGCCTGGGGCAAACAAGGACCCACAGGGGGCCAGATTCCAGTGTCTGCGTTGTAGCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp AACAAGTGGGCAGAAGTGACCCGGAGAAAGCACTCCTaGCCTTGCACACCCCCAAGTCCCTGCAAGGGACAT +
Preference number: 6 (lower is better)
Translates to: NKWAEVTRRKHS*PCTPPSPCKGH
Trigger: ATGTCCCTTGCAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp ACTCCTCGAAGCTCCAGCTGCCGTAGGGACTTGAAGGGGAAAATCTaGATAGGCCCTGGAAGGCCAACACCAGGGATATGGACCAGCTTG +
Preference number: 6 (lower is better)
Translates to: TPRSSSCRRDLKGKI*IGPGRPTPGIWTSL
Trigger: CAAGCTGGTCCATATCCCTGGTGTTGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCTTCGAGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp CCCTCAGTATCAAAGTCCCCAGCGCAGCCCCTGATGGTCCCACTCTaGGCACCAAGCGCAGGTGGTTATAGGAGATGTCCAAATGGTACA +
Preference number: 6 (lower is better)
Translates to: PSVSKSPAQPLMVPL*APSAGGYRRCPNGT
Trigger: TGTACCATTTGGACATCTCCTATAACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAGGGGCTGCGCTGGGGACTTTGATACTGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp CTGCTTGGAGTTCCACTTCAAACAAGTGGGCAGAAGTaGCCCGGAGAAAGCACTCCTTGCCTTGCACACCCC +
Preference number: 6 (lower is better)
Translates to: LLGVPLQTSGQK*PGESTPCLAHP
Trigger: GGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGAACTCCAAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CATGGCCCCAGGTACAGTTCAAACACTCTGTTCAGCTaGTGCAGTGTGGCTGTCAGCAGGCTCAGTGTGCTA +
Preference number: 6 (lower is better)
Translates to: HGPRYSSNTLFS*CSVAVSRLSVL
Trigger: TAGCACACTGAGCCTGCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACTGTACCTGGGGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp GCACTGATGCAGTTCCTTTGGGTACGAGGCAGAGACTaGAATACACCAGTGAGCTCCTCAAGGAAGGCTCGG +
Preference number: 6 (lower is better)
Translates to: ALMQFLWVRGRD*NTPVSSSRKAR
Trigger: CCGAGCCTTCCTTGAGGAGCTCACTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp GCGAGGTCACAGGCAGAATCTGCTGACTGCTCTTCCTaGTTCTGCTCTCTATTCGGGACTTCCCCAGACACA +
Preference number: 6 (lower is better)
Translates to: ARSQAESADCSS*FCSLFGTSPDT
Trigger: TGTGTCTGGGGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGCAGTCAGCAGATTCTGCCTGTGACCTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp TGGCCTGCTAACACCACTGGCACCTTGATACAGCACTaGAACTCCTCCTCGGAGTCACTGAACACCTCGACA +
Preference number: 6 (lower is better)
Translates to: WPANTTGTLIQH*NSSSESLNTST
Trigger: TGTCGAGGTGTTCAGTGACTCCGAGGAGGAGTTCCAGTGCTGTATCAAGGTGCCAGTGGTGTTAGCAGGCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp AGCTCCAGCTGCCGTAGGGACTTGAAGGGGAAAATCTaGATAGGCCCTGGAAGGCCAACACCAGGGATATGG +
Preference number: 6 (lower is better)
Translates to: SSSCRRDLKGKI*IGPGRPTPGIW
Trigger: CCATATCCCTGGTGTTGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp ATAGGGACTCCTCGAAGCTCCAGCTGCCGTAGGGACTaGAAGGGGAAAATCTTGATAGGCCCTGGAAGGCCA +
Preference number: 6 (lower is better)
Translates to: IGTPRSSSCRRD*KGKILIGPGRP
Trigger: TGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCTTCGAGGAGTCCCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp TCCACTTCAAACAAGTGGGCAGAAGTGACCCGGAGAAAGCACTCCTaGCCTTGCACACCCCCAAGTCCCTGCAAGGGACATACCAACATG +
Preference number: 6 (lower is better)
Translates to: STSNKWAEVTRRKHS*PCTPPSPCKGHTNM
Trigger: CATGTTGGTATGTCCCTTGCAGGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 90 bp TTCCAGCCTTCATCACTCTCCAGTCCCAATCTGGACTCCTCTGGCTaGAACTCACAGCTACAACGCAGACACTGGAATCTGGCCCCCTGT +
Preference number: 6 (lower is better)
Translates to: FQPSSLSSPNLDSSG*NSQLQRRHWNLAPC
Trigger: ACAGGGGGCCAGATTCCAGTGTCTGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTGGGACTGGAGAGTGATGAAGGCTGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp AGTGACAGTGTTTTCTGCAGCACATCGAAGAGGAACTaGAGCTGGAGGATGACGGGTGAGTCTGCAGGGTGG +
Preference number: 6 (lower is better)
Translates to: SDSVFCSTSKRN*SWRMTGESAGW
Trigger: CCACCCTGCAGACTCACCCGTCATCCTCCAGCTTCAGTTCCTCTTCGATGTGCTGCAGAAAACACTGTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp GCCCTGGAAGGCCAACACCAGGGATATGGACCAGCTTaGGTGACAGTGTTTTCTGCAGCACATCGAAGAGGA +
Preference number: 6 (lower is better)
Translates to: ALEGQHQGYGPA*VTVFSAAHRRG
Trigger: TCCTCTTCGATGTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCATATCCCTGGTGTTGGCCTTCCAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp CTTCTCTGGCGATTCCTTAGTGTCGTCCTCTATGGCTaGAGGGCTGCATACAGTCTCCAGGTTCTGGACATC +
Preference number: 6 (lower is better)
Translates to: LLWRFLSVVLYG*RAAYSLQVLDI
Trigger: GATGTCCAGAACCTGGAGACTGTATGCAGCCCTCCAGCCATAGAGGACGACACTAAGGAATCGCCAGAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp AGAGTCCGAGCTGCTTGGAGTTCCACTTCAAACAAGTaGGCAGAAGTGACCCGGAGAAAGCACTCCTTGCCT +
Preference number: 6 (lower is better)
Translates to: RVRAAWSSTSNK*AEVTRRKHSLP
Trigger: AGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGAACTCCAAGCAGCTCGGACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp CATCACTCTCCAGTCCCAATCTGGACTCCTCTGGCTTaGACTCACAGCTACAACGCAGACACTGGAATCTGG +
Preference number: 6 (lower is better)
Translates to: HHSPVPIWTPLA*THSYNADTGIW
Trigger: CCAGATTCCAGTGTCTGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTGGGACTGGAGAGTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS TCA 72 bp TGGAAGGCCAACACCAGGGATATGGACCAGCTTGAGTaGCAGTGTTTTCTGCAGCACATCGAAGAGGAACTG +
Preference number: 6 (lower is better)
Translates to: WKANTRDMDQLE*QCFLQHIEEEL
Trigger: CAGTTCCTCTTCGATGTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCATATCCCTGGTGTTGGCCTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS GCA 72 bp CTGAAGTTTGCTGAAGATCCTTCAGGGACAAAACCTTaGCATCAAGCAGGAAGCCATGAGCAGCATCCCTGG +
Preference number: 6 (lower is better)
Translates to: LKFAEDPSGTKP*HQAGSHEQHPW
Trigger: CCAGGGATGCTGCTCATGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGAAGGATCTTCAGCAAACTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CCA 72 bp ATCTTGATAGGCCCTGGAAGGCCAACACCAGGGATATaGACCAGCTTGAGTGACAGTGTTTTCTGCAGCACA +
Preference number: 6 (lower is better)
Translates to: ILIGPGRPTPGI*TSLSDSVFCST
Trigger: TGTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCATATCCCTGGTGTTGGCCTTCCAGGGCCTATCAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2
CDS CAA 72 bp TCATCACTCTCCAGTCCCAATCTGGACTCCTCTGGCTaGAACTCACAGCTACAACGCAGACACTGGAATCTG +
Preference number: 6 (lower is better)
Translates to: SSLSSPNLDSSG*NSQLQRRHWNL
Trigger: CAGATTCCAGTGTCTGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTGGGACTGGAGAGTGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027414.16
ENSMUST00000113553.2