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Pregenerated sensors for STFA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054905

Ensembl transcript IDs: ENSMUST00000068182.3

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTAGAATTGGCTGCTCTGGATTTCTGGTGTaGCAGGTCTGGCCTCTGACA +
Preference number: 4 (lower is better)
Translates to: DGCISLQGEESGHFRIGCSGFLV*QVWPLT
Trigger: TGTCAGAGGCCAGACCTGCCACACCAGAAATCCAGA...GCAGCCAATTCTAAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS-3UTR CCA 90 bp TTTATTGACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTAGAATTCTGGTGTGGCAGGTCTaGCCTCTGACAGGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: FIDGCISLQGEESGHFRILVWQV*PLTGLP
Trigger: AGGGAGGCCTGTCAGAGGCCAGACCTGCCACACCAG...AATTCTAAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTCAATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS-3UTR CCA 90 bp TGCTTCTTTATTGACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTAATCATCTGGATTTCTaGTGTGGCAGGTCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: CFFIDGCISLQGEESGHFNHLDF*CGRSGL
Trigger: GAGGCCAGACCTGCCACACCAGAAATCCAGATGATT...AAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTCAATAAAGAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS-3UTR TCA 90 bp ATTGACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTAGAATTGGCCTGAAGACTTTCATGTaGAGGAAACAACCATTCCCT +
Preference number: 4 (lower is better)
Translates to: IDGCISLQGEESGHFRIGLKTFM*RKQPFP
Trigger: AGGGAATGGTTGTTTCCTTCACATGAAAGTCTTCAG...GCCAATTCTAAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS-3UTR TCA 90 bp TTTATTGACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTAGAATTCTCCAGAAAGGCCTCTaGAGACTTTCATGTGAAGGA +
Preference number: 4 (lower is better)
Translates to: FIDGCISLQGEESGHFRILQKGL*RLSCEG
Trigger: TCCTTCACATGAAAGTCTTCAGAGGCCTTTCTGGAG...AATTCTAAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTCAATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS-3UTR CCA 90 bp TTTATTGACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTAGAATTTTGTCAGCAATCATCTaGATTTCTGGTGTGGCAGGT +
Preference number: 4 (lower is better)
Translates to: FIDGCISLQGEESGHFRILSAII*ISGVAG
Trigger: ACCTGCCACACCAGAAATCCAGATGATTGCTGACAA...AATTCTAAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTCAATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CCA 90 bp TTGGTTTGCTCTTCAAGCAGAGGTCTGACCTTGTCAGCAATCATCTaGATTTCTGGTGTGGCAGGTCTGGCCTCTGACAGGCCTCCCTTT +
Preference number: 5 (lower is better)
Translates to: LVCSSSRGLTLSAII*ISGVAGLASDRPPF
Trigger: AAAGGGAGGCCTGTCAGAGGCCAGACCTGCCACACCAGAAATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS TCA 90 bp CGAATTTTTCATATTTCTCATTGGTTTGCTCTTCAAGCAGAGGTCTaGCCTTGTCAGCAATCATCTGGATTTCTGGTGTGGCAGGTCTGG +
Preference number: 5 (lower is better)
Translates to: RIFHISHWFALQAEV*PCQQSSGFLVWQVW
Trigger: CCAGACCTGCCACACCAGAAATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATGAAAAATTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS GCA 90 bp GATTTATACTCGACAGCCTCGAATTTTTCATATTTCTCATTGGTTTaGTCTTCAAGCAGAGGTCTGACCTTGTCAGCAATCATCTGGATT +
Preference number: 5 (lower is better)
Translates to: DLYSTASNFSYFSLV*SSSRGLTLSAIIWI
Trigger: AATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATGAAAAATTCGAGGCTGTCGAGTATAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS-3UTR CAA 90 bp TGCTTCTTTATTGACGGCTGCATCTCTTTACAAGGAGAAGAATCAGGTCACTTTCTTAATGAACAAATTTaGTCCAGCAACGACTTGAGA +
Preference number: 5 (lower is better)
Translates to: CFFIDGCISLQGEESGHFLNEQI*SSNDLR
Trigger: TCTCAAGTCGTTGCTGGACAAAATTTGTTCATTAAG...AAAGTGACCTGATTCTTCTCCTTGTAAAGAGATGCAGCCGTCAATAAAGAAGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS TCA 90 bp AGTTTCAAATCATCTTCTCCAGAAAGGCCTCTGAAGACTTTCATGTaGAGGAAACAACCATTCCCTACATCTATCTTAATGAACAAATTT +
Preference number: 5 (lower is better)
Translates to: SFKSSSPERPLKTFM*RKQPFPTSILMNKF
Trigger: AAATTTGTTCATTAAGATAGATGTAGGGAATGGTTGTTTCCTTCACATGAAAGTCTTCAGAGGCCTTTCTGGAGAAGATGATTTGAAACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CCA 72 bp TCTTCAAGCAGAGGTCTGACCTTGTCAGCAATCATCTaGATTTCTGGTGTGGCAGGTCTGGCCTCTGACAGG +
Preference number: 6 (lower is better)
Translates to: SSSRGLTLSAII*ISGVAGLASDR
Trigger: CCTGTCAGAGGCCAGACCTGCCACACCAGAAATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CAA 72 bp TTCTCATTGGTTTGCTCTTCAAGCAGAGGTCTGACCTaGTCAGCAATCATCTGGATTTCTGGTGTGGCAGGT +
Preference number: 6 (lower is better)
Translates to: FSLVCSSSRGLT*SAIIWISGVAG
Trigger: ACCTGCCACACCAGAAATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CAA 90 bp TTTTCATATTTCTCATTGGTTTGCTCTTCAAGCAGAGGTCTGACCTaGTCAGCAATCATCTGGATTTCTGGTGTGGCAGGTCTGGCCTCT +
Preference number: 6 (lower is better)
Translates to: FSYFSLVCSSSRGLT*SAIIWISGVAGLAS
Trigger: AGAGGCCAGACCTGCCACACCAGAAATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS TCA 72 bp CATATTTCTCATTGGTTTGCTCTTCAAGCAGAGGTCTaGCCTTGTCAGCAATCATCTGGATTTCTGGTGTGG +
Preference number: 6 (lower is better)
Translates to: HISHWFALQAEV*PCQQSSGFLVW
Trigger: CCACACCAGAAATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS GCA 72 bp TCGACAGCCTCGAATTTTTCATATTTCTCATTGGTTTaGTCTTCAAGCAGAGGTCTGACCTTGTCAGCAATC +
Preference number: 6 (lower is better)
Translates to: STASNFSYFSLV*SSSRGLTLSAI
Trigger: GATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATGAAAAATTCGAGGCTGTCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CAA 72 bp CTCGACAGCCTCGAATTTTTCATATTTCTCATTGGTTaGCTCTTCAAGCAGAGGTCTGACCTTGTCAGCAAT +
Preference number: 6 (lower is better)
Translates to: LDSLEFFIFLIG*LFKQRSDLVSN
Trigger: ATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATGAAAAATTCGAGGCTGTCGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CAA 90 bp AGATTTATACTCGACAGCCTCGAATTTTTCATATTTCTCATTGGTTaGCTCTTCAAGCAGAGGTCTGACCTTGTCAGCAATCATCTGGAT +
Preference number: 6 (lower is better)
Translates to: RFILDSLEFFIFLIG*LFKQRSDLVSNHLD
Trigger: ATCCAGATGATTGCTGACAAGGTCAGACCTCTGCTTGAAGAGCAAACCAATGAGAAATATGAAAAATTCGAGGCTGTCGAGTATAAATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3
CDS CAA 90 bp GTGAAGGAAACAACCATTCCCTACATCTATCTTAATGAACAAATTTaGTCCAGCAACGACTTGAGATTTATACTCGACAGCCTCGAATTT +
Preference number: 6 (lower is better)
Translates to: VKETTIPYIYLNEQI*SSNDLRFILDSLEF
Trigger: AAATTCGAGGCTGTCGAGTATAAATCTCAAGTCGTTGCTGGACAAAATTTGTTCATTAAGATAGATGTAGGGAATGGTTGTTTCCTTCAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068182.3