Pregenerated sensors for STFA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071562

Ensembl transcript IDs: ENSMUST00000042097.11, ENSMUST00000232150.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	TTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTGCTGGCACGGCTTGCCTCTaGAACACCTCCAAGACTCAT	+
Preference number: 4 (lower is better) Translates to: FMAESLSTERNQITLEFAGTACL*NTSKTH Trigger: ATGAGTCTTGGAGGTGTTTCAGAGGCAAGCCGTGCC...AGCAAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR TCA 90 bp	TTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTGGCACGGCTTGCCTCTaGAACACCTCCAAGACTCAT	+
Preference number: 4 (lower is better) Translates to: LFMAESLSTERNQITLEFGTACL*NTSKTH Trigger: ATGAGTCTTGGAGGTGTTTCAGAGGCAAGCCGTGCC...AAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR TCA 90 bp	TTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTAACTGCATCAGTGCTTaGGGGAGGGTGGTGTCTACC	+
Preference number: 4 (lower is better) Translates to: LFMAESLSTERNQITLEFNCISA*GRVVST Trigger: GGTAGACACCACCCTCCCTCAAGCACTGATGCAGTT...AAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042097.11
CDS-3UTR TCA 90 bp	TTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTGCTGTTTTTGCTTCAAGCTaGGGTCTGACCTTGTTAGCA	+
Preference number: 4 (lower is better) Translates to: FMAESLSTERNQITLEFAVFASS*GLTLLA Trigger: TGCTAACAAGGTCAGACCTCAGCTTGAAGCAAAAAC...AGCAAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR TCA 90 bp	TTGAGGAATATTTCTTTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGGTTTTTGCTTCAAGCTaGGGTCTGACCTTGTTAGCA	+
Preference number: 4 (lower is better) Translates to: LRNISLFMAESLSTERNQVFASS*GLTLLA Trigger: TGCTAACAAGGTCAGACCTCAGCTTGAAGCAAAAAC...CTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAAAGAAATATTCCTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR CCA 90 bp	TTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTGCTTCAGCTCTTCATCCATaGTTTTGTCAGTCTGGTAAC	+
Preference number: 4 (lower is better) Translates to: FMAESLSTERNQITLEFASALHP*FCQSGN Trigger: GTTACCAGACTGACAAAACCATGGATGAAGAGCTGA...AGCAAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR CCA 90 bp	TTGAGGAATATTTCTTTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGTCAGCTCTTCATCCATaGTTTTGTCAGTCTGGTAAC	+
Preference number: 4 (lower is better) Translates to: LRNISLFMAESLSTERNQSALHP*FCQSGN Trigger: GTTACCAGACTGACAAAACCATGGATGAAGAGCTGA...CTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAAAGAAATATTCCTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR GCA 90 bp	TTGAGGAATATTTCTTTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGTTTCTTATTGGTTTTTaGTTCAAGCTGAGGTCTGAC	+
Preference number: 4 (lower is better) Translates to: LRNISLFMAESLSTERNQFLIGF*FKLRSD Trigger: GTCAGACCTCAGCTTGAAGCAAAAACCAATAAGAAA...CTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAAAGAAATATTCCTCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR GCA 90 bp	TTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTTTTCTTATTGGTTTTTaGTTCAAGCTGAGGTCTGAC	+
Preference number: 4 (lower is better) Translates to: LFMAESLSTERNQITLEFFLIGF*FKLRSD Trigger: GTCAGACCTCAGCTTGAAGCAAAAACCAATAAGAAA...AAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAA 36% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR CAA 90 bp	TTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTCAACTGCATCAGTGCTaGAGGGAGGGTGGTGTCTAC	+
Preference number: 5 (lower is better) Translates to: LFMAESLSTERNQITLEFQLHQC*REGGVY Trigger: GTAGACACCACCCTCCCTCAAGCACTGATGCAGTTG...AAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042097.11
CDS TCA 90 bp	ACGGCTTCGAATTTTTCATATTTCTTATTGGTTTTTGCTTCAAGCTaGGGTCTGACCTTGTTAGCAATCATCTGGATTTCTGGTGTGGCA	+
Preference number: 5 (lower is better) Translates to: TASNFSYFLLVFASS*GLTLLAIIWISGVA Trigger: TGCCACACCAGAAATCCAGATGATTGCTAACAAGGTCAGACCTCAGCTTGAAGCAAAAACCAATAAGAAATATGAAAAATTCGAAGCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2
CDS-3UTR CAA 90 bp	TTATTCATGGCTGAATCTCTTTCCACTGAGAGGAATCAGATCACTTTAGAATTTGAAATGAAGGTACAGTaGGGCTACAGGAAACAACTG	+
Preference number: 5 (lower is better) Translates to: LFMAESLSTERNQITLEFEMKVQ*GYRKQL Trigger: CAGTTGTTTCCTGTAGCCCAACTGTACCTTCATTTC...AAATTCTAAAGTGATCTGATTCCTCTCAGTGGAAAGAGATTCAGCCATGAATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042097.11
CDS GCA 90 bp	TTTATACTCAACGGCTTCGAATTTTTCATATTTCTTATTGGTTTTTaGTTCAAGCTGAGGTCTGACCTTGTTAGCAATCATCTGGATTTC	+
Preference number: 5 (lower is better) Translates to: FILNGFEFFIFLIGF*FKLRSDLVSNHLDF Trigger: GAAATCCAGATGATTGCTAACAAGGTCAGACCTCAGCTTGAAGCAAAAACCAATAAGAAATATGAAAAATTCGAAGCCGTTGAGTATAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042097.11 ENSMUST00000232150.2