RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STAT6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002147

Ensembl transcript IDs: ENSMUST00000092074.12, ENSMUST00000120279.2

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTaGATGAGCAGGTGTCCAGAGCTGGTCCATAGAGACAGAAGAGGC +
Preference number: 1 (lower is better)
Translates to: QFFSLDQGTVETEGT*MSRCPELVHRDRRG
Trigger: GCCTCTTCTGTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 90 bp CCTGAGCCCAGCTTCAATGCCCTAGGCCTATATGCCCTCTGTCTTTaGCACAATGTCTCTATGTTTCTGTATGTTGAGTCCCAGGCCCTG +
Preference number: 1 (lower is better)
Translates to: PEPSFNALGLYALCL*HNVSMFLYVESQAL
Trigger: CAGGGCCTGGGACTCAACATACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCATTGAAGCTGGGCTCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 90 bp TTTGGCACAATGTCTCTATGTTTCTGTATGTTGAGTCCCAGGCCCTaGCTCAACACAGTTCTGGTGTGTGTGTATGTGTGTGTGCGTGTG +
Preference number: 1 (lower is better)
Translates to: FGTMSLCFCMLSPRP*LNTVLVCVYVCVRV
Trigger: CACACGCACACACACATACACACACACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAACATACAGAAACATAGAGACATTGTGCCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR TCA 90 bp ATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTATGTTaGGTCCCAGGCCCTGGCTCAACACAGTTCTGGTGTGTGTGTATG +
Preference number: 1 (lower is better)
Translates to: ICPLSLAQCLYVSVC*VPGPGSTQFWCVCM
Trigger: CATACACACACACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAACATACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 90 bp AGAGAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTaGAAGCATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAG +
Preference number: 1 (lower is better)
Translates to: REVCIPTYIPGSRKH*KHQVTQARALCMSQ
Trigger: CTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR GCA 90 bp TATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTTaGTGTCTTATACAATGTCTCAGCCTTTCAGATATGTTAAGGTCA +
Preference number: 1 (lower is better)
Translates to: YACHSHIVTPQMILG*CLIQCLSLSDMLRS
Trigger: TGACCTTAACATATCTGAAAGGCTGAGACATTGTATAAGACAGCAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 90 bp TGTCTTATACAATGTCTCAGCCTTTCAGATATGTTAAGGTCACACTaGCAAAAGCAGAAGATACATGTTCTGTGCGGTCATACAGTGATG +
Preference number: 1 (lower is better)
Translates to: CLIQCLSLSDMLRSH*QKQKIHVLCGHTVM
Trigger: CATCACTGTATGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACATTGTATAAGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR TCA 90 bp AGGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCCGGAAGGCACCTGCATaGGCAGGTGTCCAGAGCTGG +
Preference number: 2 (lower is better)
Translates to: RTEHSSSIHHMVSQPVLFRKAPA*AGVQSW
Trigger: CCAGCTCTGGACACCTGCTCATGCAGGTGCCTTCCG...GAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR GCA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCGAGACGGAAGGCACCTaGATGAGCAGGTGTCCAGAG +
Preference number: 2 (lower is better)
Translates to: ELAVDRKVQETAVEGLNAETEGT*MSRCPE
Trigger: CTCTGGACACCTGCTCATGCAGGTGCCTTCCGTCTC...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CCA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACTTGAGTCCCAGGCCCTaGCTCAACACAGTTCTGGTG +
Preference number: 2 (lower is better)
Translates to: AELAVDRKVQETAVEGLNLSPRP*LNTVLV
Trigger: CACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAA...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR TCA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACTATGTTTCTGTATGTTaGGTCCCAGGCCCTGGCTCA +
Preference number: 2 (lower is better)
Translates to: AELAVDRKVQETAVEGLNYVSVC*VPGPGS
Trigger: TGAGCCAGGGCCTGGGACTCAACATACAGAAACATA...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR TCA 90 bp CTATACACAAGCTTAGCTCTTAGAATGCAGTCTCAAATGTCACTAGGCATCTTTCCTCCCAGAGTCACCTaGGCCCAGCTTCAATGCCCT +
Preference number: 2 (lower is better)
Translates to: LYTSLALRMQSQMSLGIFPPRVT*AQLQCP
Trigger: AGGGCATTGAAGCTGGGCTCAGGTGACTCTGGGAGG...AAAGATGCCTAGTGACATTTGAGACTGCATTCTAAGAGCTAAGCTTGTGTATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CAA 90 bp TATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTATGTaGAGTCCCAGGCCCTGGCTCAACACAGTTCTGGTGTGTGTGTAT +
Preference number: 2 (lower is better)
Translates to: YMPSVFGTMSLCFCM*SPRPWLNTVLVCVY
Trigger: ATACACACACACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAACATACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR TCA 90 bp AGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTTGTGTGCGTGTGTGTTGTaGTACAGTTGTATCACATTC +
Preference number: 2 (lower is better)
Translates to: RALCMSQPHSYSPNDTGLCACVL*YSCITF
Trigger: GAATGTGATACAACTGTATCACAACACACACGCACA...CAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CCA 90 bp AGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGTATGCCCTCTGTCTTTaGCACAATGTCTCTATGTTT +
Preference number: 2 (lower is better)
Translates to: RLELYACHSHIVTPQMILYALCL*HNVSMF
Trigger: AAACATAGAGACATTGTGCCAAAGACAGAGGGCATA...CAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CCA 90 bp AGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTTGGTCTTGGGTAAACATTaGTACAGCTATACACAAGCT +
Preference number: 2 (lower is better)
Translates to: RALCMSQPHSYSPNDTGLVLGKH*YSYTQA
Trigger: AGCTTGTGTATAGCTGTACCAATGTTTACCCAAGAC...CAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCATGTTAAGGTCACACTaGCAAAAGCAGAAGATACAT +
Preference number: 2 (lower is better)
Translates to: HQVTQARALCMSQPHSYSMLRSH*QKQKIH
Trigger: ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACAT...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CAA 90 bp TTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTaGCTGTCTTATACAATGTCTCAGCCTTTCAGATATGTTAAGGTC +
Preference number: 2 (lower is better)
Translates to: LCMSQPHSYSPNDTG*LSYTMSQPFRYVKV
Trigger: GACCTTAACATATCTGAAAGGCTGAGACATTGTATAAGACAGCAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CAA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCACCCCACTCATCCCTTaGCACCCAGTGCTGGAAAAG +
Preference number: 3 (lower is better)
Translates to: ELAVDRKVQETAVEGLNATPLIP*HPVLEK
Trigger: CTTTTCCAGCACTGGGTGCAAAGGGATGAGTGGGGT...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR TCA 72 bp GCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTaGGGGCCTCAACGCCCAGGGAGTTTACACAGAGAG +
Preference number: 3 (lower is better)
Translates to: AGSGQKSTRDSS*GPQRPGSLHRE
Trigger: CTCTCTGTGTAAACTCCCTGGGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR GCA 72 bp TCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTaGATGAGCAGGTGTCCAGAGCTGGTCCATAGAGAC +
Preference number: 3 (lower is better)
Translates to: SLDQGTVETEGT*MSRCPELVHRD
Trigger: GTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR GCA 72 bp GGGCCTCAACGCCCAGGGAGTTTACACAGAGAGGTCTaGATCCCTACTTATATCCCAGGCTCTAGGAAACAC +
Preference number: 3 (lower is better)
Translates to: GPQRPGSLHREV*IPTYIPGSRKH
Trigger: GTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTCTCTGTGTAAACTCCCTGGGCGTTGAGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR TCA 72 bp TTGACCAAGGAACAGTTGAGACGGAAGGCACCTGCATaGGCAGGTGTCCAGAGCTGGTCCATAGAGACAGAA +
Preference number: 3 (lower is better)
Translates to: LTKEQLRRKAPA*AGVQSWSIETE
Trigger: TTCTGTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CAA 90 bp CTCCCAGCCAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTGAGACAGAAGAGGCTTaGTTTCTGGGCTTCTCCAGC +
Preference number: 3 (lower is better)
Translates to: LPASSFLLTKEQLRRKAPETEEA*FLGFSS
Trigger: GCTGGAGAAGCCCAGAAACAAAGCCTCTTCTGTCTC...AGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 72 bp CAGGAAGGACAGAGCACAGCAGTTCCATACACCACATaGTCTCCCAGCCAGTTCTTTTCTCTTGACCAAGGA +
Preference number: 3 (lower is better)
Translates to: QEGQSTAVPYTT*SPSQFFSLDQG
Trigger: TCCTTGGTCAAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCCTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR TCA 72 bp CTGTCTTTGGCACAATGTCTCTATGTTTCTGTATGTTaGGTCCCAGGCCCTGGCTCAACACAGTTCTGGTGT +
Preference number: 3 (lower is better)
Translates to: LSLAQCLYVSVC*VPGPGSTQFWC
Trigger: ACACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAACATACAGAAACATAGAGACATTGTGCCAAAGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CAA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAGCCAGTTCTTTTCTCTaGACCAAGGAACAGTTGAGA +
Preference number: 3 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQASSFL*TKEQLR
Trigger: TCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGC...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 72 bp ATGTCTCTATGTTTCTGTATGTTGAGTCCCAGGCCCTaGCTCAACACAGTTCTGGTGTGTGTGTATGTGTGT +
Preference number: 3 (lower is better)
Translates to: MSLCFCMLSPRP*LNTVLVCVYVC
Trigger: ACACACATACACACACACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAACATACAGAAACATAGAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 72 bp TGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTaGAAGCATCAAGTTACCCAGGCTAGAGCTTTATGC +
Preference number: 3 (lower is better)
Translates to: CIPTYIPGSRKH*KHQVTQARALC
Trigger: GCATAAAGCTCTAGCCTGGGTAACTTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CAA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATTTGACCAAGGAACAGTaGAGACGGAAGGCACCTGCA +
Preference number: 3 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHLTKEQ*RRKAPA
Trigger: TGCAGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAA...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 72 bp AGCTTCAATGCCCTAGGCCTATATGCCCTCTGTCTTTaGCACAATGTCTCTATGTTTCTGTATGTTGAGTCC +
Preference number: 3 (lower is better)
Translates to: SFNALGLYALCL*HNVSMFLYVES
Trigger: GGACTCAACATACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCATTGAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CAA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTaGCTGTCTTATACAATGTCT +
Preference number: 3 (lower is better)
Translates to: HQVTQARALCMSQPHSYSPNDTG*LSYTMS
Trigger: AGACATTGTATAAGACAGCAACCCAGTATCATTTGG...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR GCA 72 bp CACAGCCACATAGTTACTCCCCAAATGATACTGGGTTaGTGTCTTATACAATGTCTCAGCCTTTCAGATATG +
Preference number: 3 (lower is better)
Translates to: HSHIVTPQMILG*CLIQCLSLSDM
Trigger: CATATCTGAAAGGCTGAGACATTGTATAAGACAGCAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CCA 72 bp CAATGTCTCAGCCTTTCAGATATGTTAAGGTCACACTaGCAAAAGCAGAAGATACATGTTCTGTGCGGTCAT +
Preference number: 3 (lower is better)
Translates to: QCLSLSDMLRSH*QKQKIHVLCGH
Trigger: ATGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR-3UTR CAA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCAATATGCCCTCTGTCTTaGGCACAATGTCTCTATGTT +
Preference number: 3 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSICPLS*AQCLYV
Trigger: AACATAGAGACATTGTGCCAAAGACAGAGGGCATAT...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AGGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCGCACCAGGGCCTGGGTaGCCTCCAGGTCCCCCACAG +
Preference number: 4 (lower is better)
Translates to: RTEHSSSIHHMVSQPVLFAPGPG*PPGPPQ
Trigger: CTGTGGGGGACCTGGAGGCCACCCAGGCCCTGGTGC...GAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CTCCCAGCCAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTTTCAGCACCAGGGCCTaGGTGGCCTCCAGGTCCCCC +
Preference number: 4 (lower is better)
Translates to: LPASSFLLTKEQLRRKAPFSTRA*VASRSP
Trigger: GGGGGACCTGGAGGCCACCCAGGCCCTGGTGCTGAA...AGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCCAGTCCCCTGCAGCATaGTGGCCAGGTCCTCACTTG +
Preference number: 4 (lower is better)
Translates to: ELAVDRKVQETAVEGLNAQSPAA*WPGPHL
Trigger: CAAGTGAGGACCTGGCCACCATGCTGCAGGGGACTG...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp CAGTTGTATCACATTCGAGCATTAACACCCCACTCATCCCTTTGCACCCAGTGCTCCCCCACAGTCCCCTaGAGCATGGTGGCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: QLYHIRALTPHSSLCTQCSPTVP*SMVARS
Trigger: GGACCTGGCCACCATGCTGCAGGGGACTGTGGGGGA...GCACTGGGTGCAAAGGGATGAGTGGGGTGTTAATGCTCGAATGTGATACAACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCGCATGGGTTCAGGGCTaGACACAGCATGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: ELAVDRKVQETAVEGLNAAWVQG*TQHVPG
Trigger: CCCAGGAACATGCTGTGTCCAGCCCTGAACCCATGC...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp CAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTCTTAGCAGACCCTGGGGGTaGGGCTGGTCAAAGGGCATG +
Preference number: 4 (lower is better)
Translates to: QSTAVPYTTWSPSQFFSLSRPWG*GWSKGM
Trigger: CATGCCCTTTGACCAGCCTCACCCCCAGGGTCTGCT...AAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGGGCGGAGCAGCAGTTaGTGGGAATGCTGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: AELAVDRKVQETAVEGLNGRSSS*WECCSP
Trigger: TGGAGAACAGCATTCCCAGCAACTGCTGCTCCGCCC...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp ACCTGCATGAGCAGGTGTCCAGAGCTGGTCCATAGAGACAGAAGAGGCTTTGTTAGGCATCTGGGGCTCTaGAGTAGGAAGGGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: TCMSRCPELVHRDRRGFVRHLGL*SRKGLV
Trigger: GACCAGCCCCTTCCTACTCCAGAGCCCCAGATGCCT...AACAAAGCCTCTTCTGTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTGGTTGCAGGAGGGGCTaGCTTCCTAAGGACCCTCCT +
Preference number: 4 (lower is better)
Translates to: GQSTAVPYTTWSPSQFFSGCRRG*LPKDPP
Trigger: AGGAGGGTCCTTAGGAAGCCAGCCCCTCCTGCAACC...AGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGGTTACCATGCACGATaGCCACCAAGGGCAGAGACA +
Preference number: 4 (lower is better)
Translates to: AELAVDRKVQETAVEGLNGYHAR*PPRAET
Trigger: TGTCTCTGCCCTTGGTGGTCATCGTGCATGGTAACC...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp CAGTTGTATCACATTCGAGCATTAACACCCCACTCATCCCTTTGCACCCAGTGCGACACACAGCGGTGCTaGAAGGCCTCCACACTGAGG +
Preference number: 4 (lower is better)
Translates to: QLYHIRALTPHSSLCTQCDTQRC*KASTLR
Trigger: CCTCAGTGTGGAGGCCTTTCAGCACCGCTGTGTGTC...GCACTGGGTGCAAAGGGATGAGTGGGGTGTTAATGCTCGAATGTGATACAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGATGTTCTCTATCTGTaGGGAGCCATCCTGACCCCG +
Preference number: 4 (lower is better)
Translates to: AELAVDRKVQETAVEGLNDVLYL*GAILTP
Trigger: CGGGGTCAGGATGGCTCCTCACAGATAGAGAACATC...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp CTCCCAGCCAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTGATCCGGTCCCCCAGTaGGCGAATGGACAGGTCTTT +
Preference number: 4 (lower is better)
Translates to: LPASSFLLTKEQLRRKAPDPVPQ*ANGQVF
Trigger: AAAGACCTGTCCATTCGCTCACTGGGGGACCGGATC...AGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp GGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTAGCAGTTGCTGGGAATaGTGTTCTCCAGGGGCACCG +
Preference number: 4 (lower is better)
Translates to: GQSTAVPYTTWSPSQFFSSSCWE*CSPGAP
Trigger: CGGTGCCCCTGGAGAACAGCATTCCCAGCAACTGCT...AGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CTCCCAGCCAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTCGGAGCAGCAGTTGCTaGGAATGCTGTTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: LPASSFLLTKEQLRRKAPRSSSC*ECCSPG
Trigger: CCCTGGAGAACAGCATTCCCAGCAACTGCTGCTCCG...AGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AGGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCGAACAGGAAGTGCTCTaGAAGCAGTCCCCGGCTGGT +
Preference number: 4 (lower is better)
Translates to: RTEHSSSIHHMVSQPVLFEQEVL*KQSPAG
Trigger: ACCAGCCGGGGACTGCTTCCAGAGCACTTCCTGTTC...GAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAACCTGCTCTCCAGCAGTaGCCTGAAGACGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQPALQQ*PEDAGL
Trigger: CAGTCCAGCGTCTTCAGGCCACTGCTGGAGAGCAGG...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTCTTCATAAGGTGGCACCATaGCAGGCATCTGGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: QSTAVPYTTWSPSQFFSLHKVAP*QASGAL
Trigger: CAGAGCCCCAGATGCCTGCCATGGTGCCACCTTATG...AAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTCTTCCTCCTGCCTCCCCTTaGTTCTCCAGGAGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: QSTAVPYTTWSPSQFFSLPPASP*FSRRSL
Trigger: CAAGCTTCTCCTGGAGAACCAAGGGGAGGCAGGAGG...AAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CAA 72 bp AGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTaGAGGGCCTCAACGCCCAGGGAGTTTACACAGAGA +
Preference number: 4 (lower is better)
Translates to: SWQWTEKYKRQQ*RASTPREFTQR
Trigger: TCTCTGTGTAAACTCCCTGGGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp ACCTGCATGAGCAGGTGTCCAGAGCTGGTCCATAGAGACAGAAGAGGCTTTGTTGCACCGTGTTGTTCATaGTCTCTCCTGTGCTCTCCA +
Preference number: 4 (lower is better)
Translates to: TCMSRCPELVHRDRRGFVAPCCS*SLLCSP
Trigger: TGGAGAGCACAGGAGAGATCATGAACAACACGGTGC...AACAAAGCCTCTTCTGTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTATGTGAGGAGCCATCCTaGCCCCGGATGACGTGTGCA +
Preference number: 4 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVCEEPS*PRMTCA
Trigger: TGCACACGTCATCCGGGGTCAGGATGGCTCCTCACA...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp TATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAGTTACCCAGGCTAGAGCTCAGTTCTCCACTGGCTaGCCCAATCTCCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: YIPGSRKHWKHQVTQARAQFSTG*PNLLLQ
Trigger: CTGCAGCAGGAGATTGGGGCAGCCAGTGGAGAACTG...AGCTCTAGCCTGGGTAACTTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCGCGATGCCCGGGTCTTaGGTTCCAGTTCTCCACTGG +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSAMPGS*VPVLHW
Trigger: CCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGC...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CTCCCAGCCAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTCCCCCAGTGAGCGAATaGACAGGTCTTTGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: LPASSFLLTKEQLRRKAPPPVSE*TGLWQK
Trigger: TTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGG...AGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCTCTGAAATGAGTGGATaGACTGTGGAGGATACCCCA +
Preference number: 4 (lower is better)
Translates to: ELAVDRKVQETAVEGLNASEMSG*TVEDTP
Trigger: TGGGGTATCCTCCACAGTCCATCCACTCATTTCAGA...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AAGCATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACCTGACCCAGGTGCCTTaGGGGAAACCTCCCACAGGC +
Preference number: 4 (lower is better)
Translates to: KHQVTQARALCMSQPHSYLTQVP*GKPPTG
Trigger: GCCTGTGGGAGGTTTCCCCCAAGGCACCTGGGTCAG...GTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCACACTTCTCCTCGGTaGCAGACTCTGTGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSHTSPR*QTLCPS
Trigger: GGAAGGGCACAGAGTCTGTCACCGAGGAGAAGTGTG...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAAAACCTCCCACAGGCTaGGTTAGGCAGCTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQKPPTG*VRQLSS
Trigger: AGAGGACAGCTGCCTAACTCAGCCTGTGGGAGGTTT...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp CAGTTGTATCACATTCGAGCATTAACACCCCACTCATCCCTTTGCACCCAGTGCTCCAAGGTGCTGATGTaGGGCAAGATGCTGTTTCCC +
Preference number: 4 (lower is better)
Translates to: QLYHIRALTPHSSLCTQCSKVLM*GKMLFP
Trigger: GGGAAACAGCATCTTGCCGCACATCAGCACCTTGGA...GCACTGGGTGCAAAGGGATGAGTGGGGTGTTAATGCTCGAATGTGATACAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp CTCCCAGCCAGTTCTTTTCTCTTGACCAAGGAACAGTTGAGACGGAAGGCACCTAACTTGAGTTCTTCCTaGTTCCGATGGAAGGGCCCT +
Preference number: 4 (lower is better)
Translates to: LPASSFLLTKEQLRRKAPNLSSS*FRWKGP
Trigger: AGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTT...AGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCAAGGAACTCCCAGGGCTaGCTCTCCAGCCAGTCAGCC +
Preference number: 4 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSRNSQG*LSSQSA
Trigger: GGCTGACTGGCTGGAGAGCCAGCCCTGGGAGTTCCT...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAGAAGACGCTGGACTGTaGCAGAAAGTAGGGCACTGG +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQEDAGL*QKVGHW
Trigger: CCAGTGCCCTACTTTCTGCCACAGTCCAGCGTCTTC...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp TATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAGTTACCCAGGCTAGAGCTGGAGTAGGAAGGGGCTaGTCCCTTTCCACAGTCATC +
Preference number: 4 (lower is better)
Translates to: YIPGSRKHWKHQVTQARAGVGRG*SLSTVI
Trigger: GATGACTGTGGAAAGGGACCAGCCCCTTCCTACTCC...AGCTCTAGCCTGGGTAACTTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAATTGCCCATAAGGAGATaGTTGCAGGAGGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQLPIRR*LQEGLA
Trigger: AGCCAGCCCCTCCTGCAACCATCTCCTTATGGGCAA...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CAA 72 bp CATACACCACATGGTCTCCCAGCCAGTTCTTTTCTCTaGACCAAGGAACAGTTGAGACGGAAGGCACCTGCA +
Preference number: 4 (lower is better)
Translates to: HTPHGLPASSFL*TKEQLRRKAPA
Trigger: TGCAGGTGCCTTCCGTCTCAACTGTTCCTTGGTCAAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp AGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTACATGTCTTCACTaGCCCAGGTGCCTTGGGGGA +
Preference number: 4 (lower is better)
Translates to: RLELYACHSHIVTPQMILGTCLH*PRCLGG
Trigger: TCCCCCAAGGCACCTGGGTCAGTGAAGACATGTACC...CAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAACCAGTCTTAGCCCCTTaGTGCAGAGATTCTCGGAGA +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQPVLAP*CRDSRR
Trigger: TCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGG...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCAGGGTGTGCCATTCCCTaGCAGCTGTTGCTGCCGCTT +
Preference number: 4 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSGCAIP*QLLLPL
Trigger: AAGCGGCAGCAACAGCTGGCAGGGAATGGCACACCC...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp AGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGAGAACCTGCGGGGGCTaGTTCTCCACCAGGAAAGAG +
Preference number: 4 (lower is better)
Translates to: RLELYACHSHIVTPQMILRTCGG*FSTRKE
Trigger: CTCTTTCCTGGTGGAGAAGCAGCCCCCGCAGGTTCT...CAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAGAGGTCCCTAGAAACTaGAGACCCAGCAGGAATCGA +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQEVPRN*RPSRNR
Trigger: TCGATTCCTGCTGGGTCTGCAGTTTCTAGGGACCTC...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCATCCCCTGCAGCATGGTaGCCAGGTCCTCACTTGGAC +
Preference number: 4 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSSPAAW*PGPHLD
Trigger: GTCCAAGTGAGGACCTGGCCACCATGCTGCAGGGGA...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp ACCTGCATGAGCAGGTGTCCAGAGCTGGTCCATAGAGACAGAAGAGGCTTTGTTAATCGAACCCCAGCCTaGAACTTAGTCTGTGTCTTC +
Preference number: 4 (lower is better)
Translates to: TCMSRCPELVHRDRRGFVNRTPA*NLVCVF
Trigger: GAAGACACAGACTAAGTTCCAGGCTGGGGTTCGATT...AACAAAGCCTCTTCTGTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTCTTTCGTTGAAGATCTTCTaGGCGAGGAACAGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: QSTAVPYTTWSPSQFFSLSLKIF*ARNRKC
Trigger: GCACTTCCTGTTCCTCGCCCAGAAGATCTTCAACGA...AAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp ACCTGCATGAGCAGGTGTCCAGAGCTGGTCCATAGAGACAGAAGAGGCTTTGTTATGGCAGTACACTCATaGACTCTTCTAGGCTCTGAA +
Preference number: 4 (lower is better)
Translates to: TCMSRCPELVHRDRRGFVMAVHS*TLLGSE
Trigger: TTCAGAGCCTAGAAGAGTCCATGAGTGTACTGCCAT...AACAAAGCCTCTTCTGTCTCTATGGACCAGCTCTGGACACCTGCTCATGCAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGACACAGCATGTTCCTaGGACTGGCACTGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: RLELYACHSHIVTPQMILDTACS*DWHCSR
Trigger: TCTGCTGCAGTGCCAGTCCCAGGAACATGCTGTGTC...CAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTACATCTGAGCAAAGCATaGGTTCAGGGCTGGACACAG +
Preference number: 4 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVHLSKA*VQGWTQ
Trigger: CTGTGTCCAGCCCTGAACCCATGCTTTGCTCAGATG...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CAA 72 bp TCTGTCTTTGGCACAATGTCTCTATGTTTCTGTATGTaGAGTCCCAGGCCCTGGCTCAACACAGTTCTGGTG +
Preference number: 4 (lower is better)
Translates to: SVFGTMSLCFCM*SPRPWLNTVLV
Trigger: CACCAGAACTGTGTTGAGCCAGGGCCTGGGACTCAACATACAGAAACATAGAGACATTGTGCCAAAGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAATTGGACCAGGACCATTaGCAGGAGGGTCTATCAAAT +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQLDQDH*QEGLSN
Trigger: ATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAA...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCATGTTGGGGCCCAATGTaGAGCTCGTGGAGAAGAGCA +
Preference number: 4 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSCWGPM*SSWRRA
Trigger: TGCTCTTCTCCACGAGCTTCACATTGGGCCCCAACA...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGGGCCTGAAGCTGGATaGGAAGTTTGTTGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHGPEAG*EVCWGP
Trigger: TGGGCCCCAACAAACTTCTCATCCAGCTTCAGGCCC...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCAGGAGACAGCGTTTGGTaGGGTCCAGGACACCATCAA +
Preference number: 4 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSGDSVW*GPGHHQ
Trigger: TTGATGGTGTCCTGGACCTCACCAAACGCTGTCTCC...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp AAGCATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCTCCTCAAAGGGTGTaGCATTCCCTGCCAGCTGTT +
Preference number: 4 (lower is better)
Translates to: KHQVTQARALCMSQPHSYSPQRV*HSLPAV
Trigger: AACAGCTGGCAGGGAATGGCACACCCTTTGAGGAGA...GTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTATTGTCTTGGTTACCATaGACGATGACCACCAAGGGC +
Preference number: 4 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVLSWLP*TMTTKG
Trigger: GCCCTTGGTGGTCATCGTGCATGGTAACCAAGACAA...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTGTCTTTGGCAGAAAATaGCTGGATGTTCTCTATCTG +
Preference number: 4 (lower is better)
Translates to: GQSTAVPYTTWSPSQFFSVFGRK*LDVLYL
Trigger: CAGATAGAGAACATCCAGCCATTTTCTGCCAAAGAC...AGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAGGAAAGCCTCATCTTTaGGTTTCTTGGGGTAGAGGT +
Preference number: 4 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQGKPHL*VSWGRG
Trigger: ACCTCTACCCCAAGAAACCCAAAGATGAGGCTTTCC...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCGCTGGTCAAAGGGCATaGTTATCTGGCTCATGTTGG +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSAGQRA*LSGSCW
Trigger: CCAACATGAGCCAGATAACCATGCCCTTTGACCAGC...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTTGGTCCTTAGGTCCAGGTaGGACAGTGAGATCCCTGAT +
Preference number: 4 (lower is better)
Translates to: RALCMSQPHSYSPNDTGLVLRSR*DSEIPD
Trigger: ATCAGGGATCTCACTGTCCCACCTGGACCTAAGGAC...CAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCTTGAAGTATTTGTCTaGTGGTGGCCACCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSLEVFV*WWPPAS
Trigger: TGAAGCTGGTGGCCACCATCAGACAAATACTTCAAG...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATTCCCTTACTCGATGCTaGAGCCTTCCGAGGGCTGTA +
Preference number: 4 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHSLTRC*SLPRAV
Trigger: TACAGCCCTCGGAAGGCTTCAGCATCGAGTAAGGGA...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATTCACCATGTCAGCTCTaGCCATTGGAGGCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHSPCQL*PLEAWL
Trigger: CAGCCAAGCCTCCAATGGTCAGAGCTGACATGGTGA...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp CTATACACAAGCTTAGCTCTTAGAATGCAGTCTCAAATGTCACTAGGCATCTTTTCAGGAGCAGGTTCTTaGACAGGGCGGAGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: LYTSLALRMQSQMSLGIFSGAGS*TGRSSS
Trigger: ACTGCTGCTCCGCCCTGTTCAAGAACCTGCTCCTGA...AAAGATGCCTAGTGACATTTGAGACTGCATTCTAAGAGCTAAGCTTGTGTATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR TCA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTAGACTCTTCTAGGCTCTaGAATGAGTGGATGGACTGT +
Preference number: 4 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVDSSRL*NEWMDC
Trigger: ACAGTCCATCCACTCATTTCAGAGCCTAGAAGAGTC...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp CTATACACAAGCTTAGCTCTTAGAATGCAGTCTCAAATGTCACTAGGCATCTTTACCCCGGATGACGTGTaGAATGGTGATGCCCCCGAT +
Preference number: 4 (lower is better)
Translates to: LYTSLALRMQSQMSLGIFTPDDV*NGDAPD
Trigger: ATCGGGGGCATCACCATTGCACACGTCATCCGGGGT...AAAGATGCCTAGTGACATTTGAGACTGCATTCTAAGAGCTAAGCTTGTGTATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp AGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCCAAATGATACTGGGTTGATATCTGAGCTGAGTTaGATGGAAGCATCAGGGGCC +
Preference number: 4 (lower is better)
Translates to: RALCMSQPHSYSPNDTGLISELS*MEASGA
Trigger: GGCCCCTGATGCTTCCATGCAACTCAGCTCAGATAT...CAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGACATGCATAAAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCAGGCTCCTGAAAAGATaGCAGTACACTCATGGACTC +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSRLLKR*QYTHGL
Trigger: GAGTCCATGAGTGTACTGCCATCTTTTCAGGAGCCT...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp AAGCATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTTATCTGGCTCATGTTaGGGGGCATTTGCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: KHQVTQARALCMSQPHSYLSGSC*GAFAGE
Trigger: CTCACCTGCAAATGCCCCCCAACATGAGCCAGATAA...GTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCAGAAAGTAGGGCACTaGCCATGTTGTAACAGAAAG +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSQKVGH*PCCNRK
Trigger: CTTTCTGTTACAACATGGCCAGTGCCCTACTTTCTG...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCGAATGGACAGGTCTTTaGCAGAAAATGGCTGGATGT +
Preference number: 4 (lower is better)
Translates to: HQVTQARALCMSQPHSYSEWTGL*QKMAGC
Trigger: ACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTC...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CCA 90 bp CTATACACAAGCTTAGCTCTTAGAATGCAGTCTCAAATGTCACTAGGCATCTTTCCAGGCTTAGTTCTCTaGCCTGTTTCTCTGTCACCA +
Preference number: 4 (lower is better)
Translates to: LYTSLALRMQSQMSLGIFPGLVL*PVSLSP
Trigger: TGGTGACAGAGAAACAGGCCAGAGAACTAAGCCTGG...AAAGATGCCTAGTGACATTTGAGACTGCATTCTAAGAGCTAAGCTTGTGTATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
3UTR CAA 72 bp TCACAGCCACATAGTTACTCCCCAAATGATACTGGGTaGCTGTCTTATACAATGTCTCAGCCTTTCAGATAT +
Preference number: 4 (lower is better)
Translates to: SQPHSYSPNDTG*LSYTMSQPFRY
Trigger: ATATCTGAAAGGCTGAGACATTGTATAAGACAGCAACCCAGTATCATTTGGGGAGTAACTATGTGGCTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR GCA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATAGGCTAGTGACATATTaGTTACTAATAAAGCCAATG +
Preference number: 4 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHRLVTY*LLIKPM
Trigger: CATTGGCTTTATTAGTAAGCAATATGTCACTAGCCT...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 90 bp CGATGGAAGGGCCCTGGCAGGTGGCGGAACTCCAAGGTGCTGATGTaGGGCAAGATGCTGTTTCCCTTCCCCTGCTCTCCAGCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: RWKGPGRWRNSKVLM*GKMLFPFPCSPAVA
Trigger: GGCCACTGCTGGAGAGCAGGGGAAGGGAAACAGCATCTTGCCGCACATCAGCACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS TCA 90 bp AGCAGTTGCTGGGAATGCTGTTCTCCAGGGGCACCGTGTTGTTCATaGTCTCTCCTGTGCTCTCCACTCCAGTCCCGGGCCCCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: SSCWECCSPGAPCCS*SLLCSPLQSRAPGP
Trigger: TGGCCCAGGGGCCCGGGACTGGAGTGGAGAGCACAGGAGAGATCATGAACAACACGGTGCCCCTGGAGAACAGCATTCCCAGCAACTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp GGTCCTGTTCAGTGGGAGGCATCAGGGGAGGGTACATGTCTTCACTaGCCCAGGTGCCTTGGGGGAAACCTCCCACAGGCTGAGTTAGGC +
Preference number: 5 (lower is better)
Translates to: GPVQWEASGEGTCLH*PRCLGGNLPQAELG
Trigger: GCCTAACTCAGCCTGTGGGAGGTTTCCCCCAAGGCACCTGGGTCAGTGAAGACATGTACCCTCCCCTGATGCCTCCCACTGAACAGGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp TGCGGCAAGATGCTGTTTCCCTTCCCCTGCTCTCCAGCAGTGGCCTaGAGACGCTGGACTGTGGCAGAAAGTAGGGCACTGGCCATGTTG +
Preference number: 5 (lower is better)
Translates to: CGKMLFPFPCSPAVA*RRWTVAESRALAML
Trigger: CAACATGGCCAGTGCCCTACTTTCTGCCACAGTCCAGCGTCTTCAGGCCACTGCTGGAGAGCAGGGGAAGGGAAACAGCATCTTGCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092074.12
ENSMUST00000120279.2
CDS GCA 90 bp GGTCACAAGGGTTCGCAGGACTTCATCCAGACGGCTTATCAGCGATaGCCGGGTCTTGGGTTCCAGTTCTCCACTGGCTGCCCCAATCTC +
Preference number: 5 (lower is better)
Translates to: GHKGSQDFIQTAYQR*PGLGFQFSTGCPNL
Trigger: GAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGCCGTCTGGATGAAGTCCTGCGAACCCTTGTGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp TTCGCAGGACTTCATCCAGACGGCTTATCAGCGATGCCCGGGTCTTaGGTTCCAGTTCTCCACTGGCTGCCCCAATCTCCTGCTGCAGCT +
Preference number: 5 (lower is better)
Translates to: FAGLHPDGLSAMPGS*VPVLHWLPQSPAAA
Trigger: AGCTGCAGCAGGAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGCCGTCTGGATGAAGTCCTGCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 90 bp ACCCCAGCCTGGAACTTAGTCTGTGTCTTCAGAACCTGCGGGGGCTaGTTCTCCACCAGGAAAGAGCTGGTCACAAGGGTTCGCAGGACT +
Preference number: 5 (lower is better)
Translates to: TPAWNLVCVFRTCGG*FSTRKELVTRVRRT
Trigger: AGTCCTGCGAACCCTTGTGACCAGCTCTTTCCTGGTGGAGAAGCAGCCCCCGCAGGTTCTGAAGACACAGACTAAGTTCCAGGCTGGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 90 bp CTGAGGCTGTTGTCGTTGAAGATCTTCTGGGCGAGGAACAGGAAGTaGTCTGGAAGCAGTCCCCGGCTGGTCCCCACCTCAGCCATAAAC +
Preference number: 5 (lower is better)
Translates to: LRLLSLKIFWARNRK*SGSSPRLVPTSAIN
Trigger: GTTTATGGCTGAGGTGGGGACCAGCCGGGGACTGCTTCCAGAGCACTTCCTGTTCCTCGCCCAGAAGATCTTCAACGACAACAGCCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp CAGGTCCCCCACAGTCCCCTGCAGCATGGTGGCCAGGTCCTCACTTaGACCAGGACCATTGACAGGAGGGTCTATCAAATTCTGCAGAGA +
Preference number: 5 (lower is better)
Translates to: QVPHSPLQHGGQVLT*TRTIDRRVYQILQR
Trigger: TCTCTGCAGAATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGCTGCAGGGGACTGTGGGGGACCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp AGCCTTCCGAGGGCTGTAGTAAACTTGAGTTCTTCCTGCTTCCGATaGAAGGGCCCTGGCAGGTGGCGGAACTCCAAGGTGCTGATGTGC +
Preference number: 5 (lower is better)
Translates to: SLPRAVVNLSSSCFR*KGPGRWRNSKVLMC
Trigger: GCACATCAGCACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCTCGGAAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS GCA 90 bp TTTCACACCTCTCCTGCAGCCCTGCTAGGCTCTCCTCAAAGGGTGTaGCATTCCCTGCCAGCTGTTGCTGCCGCTTCCAAATCTGAATCC +
Preference number: 5 (lower is better)
Translates to: FHTSPAALLGSPQRV*HSLPAVAAASKSES
Trigger: GGATTCAGATTTGGAAGCGGCAGCAACAGCTGGCAGGGAATGGCACACCCTTTGAGGAGAGCCTAGCAGGGCTGCAGGAGAGGTGTGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 90 bp GCTTATCAGCGATGCCCGGGTCTTGGGTTCCAGTTCTCCACTGGCTaGCCCAATCTCCTGCTGCAGCTGGGAATAAATTTCCACCAGGCT +
Preference number: 5 (lower is better)
Translates to: AYQRCPGLGFQFSTG*PNLLLQLGINFHQA
Trigger: AGCCTGGTGGAAATTTATTCCCAGCTGCAGCAGGAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp GCTGTTGTCGTTGAAGATCTTCTGGGCGAGGAACAGGAAGTGCTCTaGAAGCAGTCCCCGGCTGGTCCCCACCTCAGCCATAAACTTGAG +
Preference number: 5 (lower is better)
Translates to: AVVVEDLLGEEQEVL*KQSPAGPHLSHKLE
Trigger: CTCAAGTTTATGGCTGAGGTGGGGACCAGCCGGGGACTGCTTCCAGAGCACTTCCTGTTCCTCGCCCAGAAGATCTTCAACGACAACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp GTAAACTTGAGTTCTTCCTGCTTCCGATGGAAGGGCCCTGGCAGGTaGCGGAACTCCAAGGTGCTGATGTGCGGCAAGATGCTGTTTCCC +
Preference number: 5 (lower is better)
Translates to: VNLSSSCFRWKGPGR*RNSKVLMCGKMLFP
Trigger: GGGAAACAGCATCTTGCCGCACATCAGCACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS CCA 90 bp GGCTGTAGTAAACTTGAGTTCTTCCTGCTTCCGATGGAAGGGCCCTaGCAGGTGGCGGAACTCCAAGGTGCTGATGTGCGGCAAGATGCT +
Preference number: 5 (lower is better)
Translates to: GCSKLEFFLLPMEGP*QVAELQGADVRQDA
Trigger: AGCATCTTGCCGCACATCAGCACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS-3UTR CAA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACCTCCGGAGACAGCGTTaGGTGAGGTCCAGGACACCA +
Preference number: 5 (lower is better)
Translates to: AELAVDRKVQETAVEGLNLRRQR*VRSRTP
Trigger: TGGTGTCCTGGACCTCACCAAACGCTGTCTCCGGAG...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp CCAAAATGTGAAGCCTCGGCCCAGCAGGATCTCCTTATTGAACTGTaGCCAGGACACACAGCGGTGCTGAAAGGCCTCCACACTGAGGCT +
Preference number: 5 (lower is better)
Translates to: PKCEASAQQDLLIEL*PGHTAVLKGLHTEA
Trigger: AGCCTCAGTGTGGAGGCCTTTCAGCACCGCTGTGTGTCCTGGTCACAGTTCAATAAGGAGATCCTGCTGGGCCGAGGCTTCACATTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp TCCCCTGCAGCATGGTGGCCAGGTCCTCACTTGGACCAGGACCATTaGCAGGAGGGTCTATCAAATTCTGCAGAGACACTTGTCCAGTCT +
Preference number: 5 (lower is better)
Translates to: SPAAWWPGPHLDQDH*QEGLSNSAETLVQS
Trigger: AGACTGGACAAGTGTCTCTGCAGAATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGCTGCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp TCTTGGTTACCATGCACGATGACCACCAAGGGCAGAGACAGGGCCTaGAGCTGGATGAGAAGTTTGTTGGGGCCCAATGTGAAGCTCGTG +
Preference number: 5 (lower is better)
Translates to: SWLPCTMTTKGRDRA*SWMRSLLGPNVKLV
Trigger: CACGAGCTTCACATTGGGCCCCAACAAACTTCTCATCCAGCTTCAGGCCCTGTCTCTGCCCTTGGTGGTCATCGTGCATGGTAACCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp ATGTCTTCACTGACCCAGGTGCCTTGGGGGAAACCTCCCACAGGCTaGGTTAGGCAGCTGTCCTCTACCATAGTCACATCTGAGCAAAGC +
Preference number: 5 (lower is better)
Translates to: MSSLTQVPWGKPPTG*VRQLSSTIVTSEQS
Trigger: GCTTTGCTCAGATGTGACTATGGTAGAGGACAGCTGCCTAACTCAGCCTGTGGGAGGTTTCCCCCAAGGCACCTGGGTCAGTGAAGACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 90 bp ATGTCAGCTCTGACCATTGGAGGCTTGGCTGAGGTCCCTAGAAACTaGAGACCCAGCAGGAATCGAACCCCAGCCTGGAACTTAGTCTGT +
Preference number: 5 (lower is better)
Translates to: MSALTIGGLAEVPRN*RPSRNRTPAWNLVC
Trigger: ACAGACTAAGTTCCAGGCTGGGGTTCGATTCCTGCTGGGTCTGCAGTTTCTAGGGACCTCAGCCAAGCCTCCAATGGTCAGAGCTGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp CAAGATCCCGGATCCGGTCCCCCAGTGAGCGAATGGACAGGTCTTTaGCAGAAAATGGCTGGATGTTCTCTATCTGTGAGGAGCCATCCT +
Preference number: 5 (lower is better)
Translates to: QDPGSGPPVSEWTGL*QKMAGCSLSVRSHP
Trigger: AGGATGGCTCCTCACAGATAGAGAACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGGATCCGGGATCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACCTGACCATTGGAGGCTaGGCTGAGGTCCCTAGAAAC +
Preference number: 5 (lower is better)
Translates to: AELAVDRKVQETAVEGLNLTIGG*AEVPRN
Trigger: GTTTCTAGGGACCTCAGCCAAGCCTCCAATGGTCAG...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GCAGAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACTCCAGGGGCACCGTGTaGTTCATGATCTCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: AELAVDRKVQETAVEGLNSRGTV*FMISPV
Trigger: CACAGGAGAGATCATGAACAACACGGTGCCCCTGGA...GTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCGTCCCATCTGGCTCATaGAGGAGAAGGCTAGTGACA +
Preference number: 5 (lower is better)
Translates to: ELAVDRKVQETAVEGLNAVPSGS*RRRLVT
Trigger: TGTCACTAGCCTTCTCCTCAATGAGCCAGATGGGAC...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAACTGACCCAGGTGCCTaGGGGGAAACCTCCCACAGG +
Preference number: 5 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQTDPGA*GETSHR
Trigger: CCTGTGGGAGGTTTCCCCCAAGGCACCTGGGTCAGT...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GAGCTGGCAGTGGACAGAAAAGTACAAGAGACAGCAGTTGAGGGCCTCAACGCCTTCTCCAGGAGAAGCTaGGTGAGGTCCTGTTCAGTG +
Preference number: 5 (lower is better)
Translates to: ELAVDRKVQETAVEGLNAFSRRS*VRSCSV
Trigger: CACTGAACAGGACCTCACCAAGCTTCTCCTGGAGAA...GGCGTTGAGGCCCTCAACTGCTGTCTCTTGTACTTTTCTGTCCACTGCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp CAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCTCTTCCCATAAGGAGATGGTaGCAGGAGGGGCTGGCTTCC +
Preference number: 5 (lower is better)
Translates to: QSTAVPYTTWSPSQFFSLPIRRW*QEGLAS
Trigger: GGAAGCCAGCCCCTCCTGCAACCATCTCCTTATGGG...AAGAGAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp TGCTGCAGAGATTCTCGGAGAAGCCGGGTCTCCCTTACTCGATGCTaGAGCCTTCCGAGGGCTGTAGTAAACTTGAGTTCTTCCTGCTTC +
Preference number: 5 (lower is better)
Translates to: CCRDSRRSRVSLTRC*SLPRAVVNLSSSCF
Trigger: GAAGCAGGAAGAACTCAAGTTTACTACAGCCCTCGGAAGGCTTCAGCATCGAGTAAGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 90 bp GGGTCTATCAAATTCTGCAGAGACACTTGTCCAGTCTTAGCCCCTTaGTGCAGAGATTCTCGGAGAAGCCGGGTCTCCCTTACTCGATGC +
Preference number: 5 (lower is better)
Translates to: GSIKFCRDTCPVLAP*CRDSRRSRVSLTRC
Trigger: GCATCGAGTAAGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGAATTTGATAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp AGCAGGATCTCCTTATTGAACTGTGACCAGGACACACAGCGGTGCTaGAAGGCCTCCACACTGAGGCTGTTGTCGTTGAAGATCTTCTGG +
Preference number: 5 (lower is better)
Translates to: SRISLLNCDQDTQRC*KASTLRLLSLKIFW
Trigger: CCAGAAGATCTTCAACGACAACAGCCTCAGTGTGGAGGCCTTTCAGCACCGCTGTGTGTCCTGGTCACAGTTCAATAAGGAGATCCTGCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 90 bp AGCCTTCCGAGGGCTGTAGTAAACTTGAGTTCTTCCTGCTTCCGATaGAAGGGCCCTGGCAGGTGGCGGAACTCTTCTATAACAGCTTTT +
Preference number: 5 (lower is better)
Translates to: SLPRAVVNLSSSCFR*KGPGRWRNSSITAF
Trigger: AAAAGCTGTTATAGAAGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCTCGGAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTAAGGGCGGAGCAGCAGTaGCTGGGAATGCTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVRAEQQ*LGMLFS
Trigger: GGAGAACAGCATTCCCAGCAACTGCTGCTCCGCCCT...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTAATTCCCTGCCAGCTGTaGCTGCCGCTTCCAAATCTG +
Preference number: 5 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVIPCQL*LPLPNL
Trigger: CAGATTTGGAAGCGGCAGCAACAGCTGGCAGGGAAT...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 90 bp TCTGAAATGAGTGGATGGACTGTGGAGGATACCCCATATCTGAGCTaGGTTGCATGGAAGCATCAGGGGCCATTCCAAGATCATAAGGTG +
Preference number: 5 (lower is better)
Translates to: SEMSGWTVEDTPYLS*VAWKHQGPFQDHKV
Trigger: CACCTTATGATCTTGGAATGGCCCCTGATGCTTCCATGCAACTCAGCTCAGATATGGGGTATCCTCCACAGTCCATCCACTCATTTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTACTCCCCTTGAAGTATTaGTCTGATGGTGGCCACCAG +
Preference number: 5 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVLPLKY*SDGGHQ
Trigger: CTGGTGGCCACCATCAGACAAATACTTCAAGGGGAG...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATAGCGATGCCCGGGTCTaGGGTTCCAGTTCTCCACTG +
Preference number: 5 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHSDARV*GSSSPL
Trigger: CAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCT...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCATTCAGGAGCAGGTTCTaGAACAGGGCGGAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSFRSRF*NRAEQQ
Trigger: CTGCTGCTCCGCCCTGTTCAAGAACCTGCTCCTGAA...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp AGGACAGAGCACAGCAGTTCCATACACCACATGGTCTCCCAGCCAGTTCTTTTCCATAGGATGGTAGCTTaGGCGTTGTTGTCTTGGTTA +
Preference number: 5 (lower is better)
Translates to: RTEHSSSIHHMVSQPVLFHRMVA*ALLSWL
Trigger: TAACCAAGACAACAACGCCAAAGCTACCATCCTATG...GAAAAGAACTGGCTGGGAGACCATGTGGTGTATGGAACTGCTGTGCTCTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAAGGGCTGTAGTAAACTaGAGTTCTTCCTGCTTCCGA +
Preference number: 5 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQRAVVN*SSSCFR
Trigger: TCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCT...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCAGCTGGATGAGAAGTTaGTTGGGGCCCAATGTGAAG +
Preference number: 5 (lower is better)
Translates to: HQVTQARALCMSQPHSYSSWMRS*LGPNVK
Trigger: CTTCACATTGGGCCCCAACAAACTTCTCATCCAGCT...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAATCTCAGAGAAGGCATaGTCCCATAGGATGGTAGCT +
Preference number: 5 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQISEKA*SHRMVA
Trigger: AGCTACCATCCTATGGGACAATGCCTTCTCTGAGAT...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp GAGGTCTGCATCCCTACTTATATCCCAGGCTCTAGGAAACACTGGAAGCATCAAAGCAGGATCTCCTTATaGAACTGTGACCAGGACACA +
Preference number: 5 (lower is better)
Translates to: EVCIPTYIPGSRKHWKHQSRISL*NCDQDT
Trigger: TGTGTCCTGGTCACAGTTCAATAAGGAGATCCTGCT...TTGATGCTTCCAGTGTTTCCTAGAGCCTGGGATATAAGTAGGGATGCAGACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCCGAATGGACAGGTCTTaGGCAGAAAATGGCTGGATG +
Preference number: 5 (lower is better)
Translates to: HQVTQARALCMSQPHSYSRMDRS*AENGWM
Trigger: CATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCG...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp CTATACACAAGCTTAGCTCTTAGAATGCAGTCTCAAATGTCACTAGGCATCTTTCCCTCCTGCCTCCCCTaGGTTCTCCAGGAGAAGCTT +
Preference number: 5 (lower is better)
Translates to: LYTSLALRMQSQMSLGIFPSCLP*VLQEKL
Trigger: AAGCTTCTCCTGGAGAACCAAGGGGAGGCAGGAGGG...AAAGATGCCTAGTGACATTTGAGACTGCATTCTAAGAGCTAAGCTTGTGTATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGCCCTAGGCCTATATGCCCTCTGTCTTTGGCACAATGTCTCTATGTTTCTGTAGTCAACATAGAGCCGTaGCAGTTTTTCTGGGGACAT +
Preference number: 5 (lower is better)
Translates to: CPRPICPLSLAQCLYVSVVNIEP*QFFWGH
Trigger: ATGTCCCCAGAAAAACTGCAACGGCTCTATGTTGAC...TACAGAAACATAGAGACATTGTGCCAAAGACAGAGGGCATATAGGCCTAGGGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATCTGAGGCTGTTGTCGTaGAAGATCTTCTGGGCGAGG +
Preference number: 5 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHLRLLS*KIFWAR
Trigger: CCTCGCCCAGAAGATCTTCAACGACAACAGCCTCAG...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp CATCAAGTTACCCAGGCTAGAGCTTTATGCATGTCACAGCCACATAGTTACTCCACCTCAGCCATAAACTaGAGGTTTAGGGTTTCACAC +
Preference number: 5 (lower is better)
Translates to: HQVTQARALCMSQPHSYSTSAIN*RFRVSH
Trigger: GTGTGAAACCCTAAACCTCAAGTTTATGGCTGAGGT...GGAGTAACTATGTGGCTGTGACATGCATAAAGCTCTAGCCTGGGTAACTTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp AGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATGTTCTGTGCGGTCATCCACACTGAGGCTGTaGTCGTTGAAGATCTTCTGG +
Preference number: 5 (lower is better)
Translates to: RYVKVTLAKAEDTCSVRSSTLRL*SLKIFW
Trigger: CCAGAAGATCTTCAACGACAACAGCCTCAGTGTGGA...TGACCGCACAGAACATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS-3UTR CAA 90 bp TGTCTCAGCCTTTCAGATATGTTAAGGTCACACTGGCAAAAGCAGAAGATACATATGGTAGCTTTGGCGTaGTTGTCTTGGTTACCATGC +
Preference number: 5 (lower is better)
Translates to: CLSLSDMLRSHWQKQKIHMVALA*LSWLPC
Trigger: GCATGGTAACCAAGACAACAACGCCAAAGCTACCAT...ATGTATCTTCTGCTTTTGCCAGTGTGACCTTAACATATCTGAAAGGCTGAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp ATCTCTCCTGTGCTCTCCACTCCAGTCCCGGGCCCCTaGGCCAGGCTTAGTTCTCTGGCCTGTTTCTCTGTC +
Preference number: 6 (lower is better)
Translates to: ISPVLSTPVPGP*ARLSSLACFSV
Trigger: GACAGAGAAACAGGCCAGAGAACTAAGCCTGGCCCAGGGGCCCGGGACTGGAGTGGAGAGCACAGGAGAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 90 bp GTTCGCAGGACTTCATCCAGACGGCTTATCAGCGATGCCCGGGTCTaGGGTTCCAGTTCTCCACTGGCTGCCCCAATCTCCTGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: VRRTSSRRLISDARV*GSSSPLAAPISCCS
Trigger: GCTGCAGCAGGAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGCCGTCTGGATGAAGTCCTGCGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp TCTCCTGCAGCCCTGCTAGGCTCTCCTCAAAGGGTGTaGCATTCCCTGCCAGCTGTTGCTGCCGCTTCCAAA +
Preference number: 6 (lower is better)
Translates to: SPAALLGSPQRV*HSLPAVAAASK
Trigger: TTTGGAAGCGGCAGCAACAGCTGGCAGGGAATGGCACACCCTTTGAGGAGAGCCTAGCAGGGCTGCAGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp GGTTCGCAGGACTTCATCCAGACGGCTTATCAGCGATaGCCGGGTCTTGGGTTCCAGTTCTCCACTGGCTGC +
Preference number: 6 (lower is better)
Translates to: GSQDFIQTAYQR*PGLGFQFSTGC
Trigger: GCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGCCGTCTGGATGAAGTCCTGCGAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp GTTGAAGATCTTCTGGGCGAGGAACAGGAAGTGCTCTaGAAGCAGTCCCCGGCTGGTCCCCACCTCAGCCAT +
Preference number: 6 (lower is better)
Translates to: VEDLLGEEQEVL*KQSPAGPHLSH
Trigger: ATGGCTGAGGTGGGGACCAGCCGGGGACTGCTTCCAGAGCACTTCCTGTTCCTCGCCCAGAAGATCTTCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp AGTTCTTCCTGCTTCCGATGGAAGGGCCCTGGCAGGTaGCGGAACTCCAAGGTGCTGATGTGCGGCAAGATG +
Preference number: 6 (lower is better)
Translates to: SSSCFRWKGPGR*RNSKVLMCGKM
Trigger: CATCTTGCCGCACATCAGCACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS TCA 72 bp ATGCTGTTTCCCTTCCCCTGCTCTCCAGCAGTGGCCTaGAGACGCTGGACTGTGGCAGAAAGTAGGGCACTG +
Preference number: 6 (lower is better)
Translates to: MLFPFPCSPAVA*RRWTVAESRAL
Trigger: CAGTGCCCTACTTTCTGCCACAGTCCAGCGTCTTCAGGCCACTGCTGGAGAGCAGGGGAAGGGAAACAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092074.12
ENSMUST00000120279.2
CDS GCA 72 bp AGCCTTCCGAGGGCTGTAGTAAACTTGAGTTCTTCCTaGTTCCGATGGAAGGGCCCTGGCAGGTGGCGGAAC +
Preference number: 6 (lower is better)
Translates to: SLPRAVVNLSSS*FRWKGPGRWRN
Trigger: GTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCTCGGAAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092074.12
ENSMUST00000120279.2
CDS GCA 72 bp CTGACCATTGGAGGCTTGGCTGAGGTCCCTAGAAACTaGAGACCCAGCAGGAATCGAACCCCAGCCTGGAAC +
Preference number: 6 (lower is better)
Translates to: LTIGGLAEVPRN*RPSRNRTPAWN
Trigger: GTTCCAGGCTGGGGTTCGATTCCTGCTGGGTCTGCAGTTTCTAGGGACCTCAGCCAAGCCTCCAATGGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp TTGTCGTTGAAGATCTTCTGGGCGAGGAACAGGAAGTaGTCTGGAAGCAGTCCCCGGCTGGTCCCCACCTCA +
Preference number: 6 (lower is better)
Translates to: LSLKIFWARNRK*SGSSPRLVPTS
Trigger: TGAGGTGGGGACCAGCCGGGGACTGCTTCCAGAGCACTTCCTGTTCCTCGCCCAGAAGATCTTCAACGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp CTTCATCCAGACGGCTTATCAGCGATGCCCGGGTCTTaGGTTCCAGTTCTCCACTGGCTGCCCCAATCTCCT +
Preference number: 6 (lower is better)
Translates to: LHPDGLSAMPGS*VPVLHWLPQSP
Trigger: AGGAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGCCGTCTGGATGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp AAACTTGAGTTCTTCCTGCTTCCGATGGAAGGGCCCTaGCAGGTGGCGGAACTCCAAGGTGCTGATGTGCGG +
Preference number: 6 (lower is better)
Translates to: KLEFFLLPMEGP*QVAELQGADVR
Trigger: CCGCACATCAGCACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS CAA 72 bp ACTTCATCCAGACGGCTTATCAGCGATGCCCGGGTCTaGGGTTCCAGTTCTCCACTGGCTGCCCCAATCTCC +
Preference number: 6 (lower is better)
Translates to: TSSRRLISDARV*GSSSPLAAPIS
Trigger: GGAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCTGATAAGCCGTCTGGATGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 90 bp TGCTCTGGAAGCAGTCCCCGGCTGGTCCCCACCTCAGCCATAAACTaGAGGTTTAGGGTTTCACACATCTTCTCCCAGGGCACTCGCTCA +
Preference number: 6 (lower is better)
Translates to: CSGSSPRLVPTSAIN*RFRVSHIFSQGTRS
Trigger: TGAGCGAGTGCCCTGGGAGAAGATGTGTGAAACCCTAAACCTCAAGTTTATGGCTGAGGTGGGGACCAGCCGGGGACTGCTTCCAGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp TCAGGGGGTCCCTCTGATAGATGCTCTCCAAGGTGCTaGTGTGCGGCAAGATGCTGTTTCCCTTCCCCTGCT +
Preference number: 6 (lower is better)
Translates to: SGGPSDRCSPRC*CAARCCFPSPA
Trigger: AGCAGGGGAAGGGAAACAGCATCTTGCCGCACATCAGCACCTTGGAGAGCATCTATCAGAGGGACCCCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp CTGACCCAGGTGCCTTGGGGGAAACCTCCCACAGGCTaGGTTAGGCAGCTGTCCTCTACCATAGTCACATCT +
Preference number: 6 (lower is better)
Translates to: LTQVPWGKPPTG*VRQLSSTIVTS
Trigger: AGATGTGACTATGGTAGAGGACAGCTGCCTAACTCAGCCTGTGGGAGGTTTCCCCCAAGGCACCTGGGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp CATGGAAGCATCAGGGGCCATTCCAAGATCATAAGGTaGCACCATGGCAGGCATCTGGGGCTCTGGAGTAGG +
Preference number: 6 (lower is better)
Translates to: HGSIRGHSKIIR*HHGRHLGLWSR
Trigger: CCTACTCCAGAGCCCCAGATGCCTGCCATGGTGCCACCTTATGATCTTGGAATGGCCCCTGATGCTTCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp AGGGCTGTAGTAAACTTGAGTTCTTCCTGCTTCCGATaGAAGGGCCCTGGCAGGTGGCGGAACTCCAAGGTG +
Preference number: 6 (lower is better)
Translates to: RAVVNLSSSCFR*KGPGRWRNSKV
Trigger: CACCTTGGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120279.2
CDS CAA 72 bp AGCAGTCCCCGGCTGGTCCCCACCTCAGCCATAAACTaGAGGTTTAGGGTTTCACACATCTTCTCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: SSPRLVPTSAIN*RFRVSHIFSQG
Trigger: GCCCTGGGAGAAGATGTGTGAAACCCTAAACCTCAAGTTTATGGCTGAGGTGGGGACCAGCCGGGGACTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 90 bp GTCCCCTGCAGCATGGTGGCCAGGTCCTCACTTGGACCAGGACCATaGACAGGAGGGTCTATCAAATTCTGCAGAGACACTTGTCCAGTC +
Preference number: 6 (lower is better)
Translates to: VPCSMVARSSLGPGP*TGGSIKFCRDTCPV
Trigger: GACTGGACAAGTGTCTCTGCAGAATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGCTGCAGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 90 bp GCAAGATCCCGGATCCGGTCCCCCAGTGAGCGAATGGACAGGTCTTaGGCAGAAAATGGCTGGATGTTCTCTATCTGTGAGGAGCCATCC +
Preference number: 6 (lower is better)
Translates to: ARSRIRSPSERMDRS*AENGWMFSICEEPS
Trigger: GGATGGCTCCTCACAGATAGAGAACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGGATCCGGGATCTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp GCCGATCTGACCAGTAGCTCCGGAGACAGCGTTTGGTaGGGTCCAGGACACCATCAAACCACTGCCAAAATG +
Preference number: 6 (lower is better)
Translates to: ADLTSSSGDSVW*GPGHHQTTAKM
Trigger: CATTTTGGCAGTGGTTTGATGGTGTCCTGGACCTCACCAAACGCTGTCTCCGGAGCTACTGGTCAGATCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp CACAGTCCCCTGCAGCATGGTGGCCAGGTCCTCACTTaGACCAGGACCATTGACAGGAGGGTCTATCAAATT +
Preference number: 6 (lower is better)
Translates to: HSPLQHGGQVLT*TRTIDRRVYQI
Trigger: AATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGCTGCAGGGGACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp GAGCAAGATCCCGGATCCGGTCCCCCAGTGAGCGAATaGACAGGTCTTTGGCAGAAAATGGCTGGATGTTCT +
Preference number: 6 (lower is better)
Translates to: EQDPGSGPPVSE*TGLWQKMAGCS
Trigger: AGAACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGGATCCGGGATCTTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp TTCTCTGTCACCATGTCAGCTCTGACCATTGGAGGCTaGGCTGAGGTCCCTAGAAACTGCAGACCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: FSVTMSALTIGG*AEVPRNCRPSR
Trigger: CCTGCTGGGTCTGCAGTTTCTAGGGACCTCAGCCAAGCCTCCAATGGTCAGAGCTGACATGGTGACAGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp TTCTGCAGAGACACTTGTCCAGTCTTAGCCCCTTGCTaGAGAGATTCTCGGAGAAGCCGGGTCTCCCTTACT +
Preference number: 6 (lower is better)
Translates to: FCRDTCPVLAPC*RDSRRSRVSLT
Trigger: AGTAAGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp TGGAACTTAGTCTGTGTCTTCAGAACCTGCGGGGGCTaGTTCTCCACCAGGAAAGAGCTGGTCACAAGGGTT +
Preference number: 6 (lower is better)
Translates to: WNLVCVFRTCGG*FSTRKELVTRV
Trigger: AACCCTTGTGACCAGCTCTTTCCTGGTGGAGAAGCAGCCCCCGCAGGTTCTGAAGACACAGACTAAGTTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp GGATCCGGTCCCCCAGTGAGCGAATGGACAGGTCTTTaGCAGAAAATGGCTGGATGTTCTCTATCTGTGAGG +
Preference number: 6 (lower is better)
Translates to: GSGPPVSEWTGL*QKMAGCSLSVR
Trigger: CCTCACAGATAGAGAACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGGATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp ATGGCAGGCATCTGGGGCTCTGGAGTAGGAAGGGGCTaGTCCCTTTCCACAGTCATCTTGATAGTAGTAGAG +
Preference number: 6 (lower is better)
Translates to: MAGIWGSGVGRG*SLSTVILIVVE
Trigger: CTCTACTACTATCAAGATGACTGTGGAAAGGGACCAGCCCCTTCCTACTCCAGAGCCCCAGATGCCTGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp CAAATTCTGCAGAGACACTTGTCCAGTCTTAGCCCCTaGCTGCAGAGATTCTCGGAGAAGCCGGGTCTCCCT +
Preference number: 6 (lower is better)
Translates to: QILQRHLSSLSP*LQRFSEKPGLP
Trigger: AGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGAATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp GCTCTCCTCAAAGGGTGTGCCATTCCCTGCCAGCTGTaGCTGCCGCTTCCAAATCTGAATCCTTTTCAGCAC +
Preference number: 6 (lower is better)
Translates to: ALLKGCAIPCQL*LPLPNLNPFQH
Trigger: GTGCTGAAAAGGATTCAGATTTGGAAGCGGCAGCAACAGCTGGCAGGGAATGGCACACCCTTTGAGGAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp CGGATCCGGTCCCCCAGTGAGCGAATGGACAGGTCTTaGGCAGAAAATGGCTGGATGTTCTCTATCTGTGAG +
Preference number: 6 (lower is better)
Translates to: RIRSPSERMDRS*AENGWMFSICE
Trigger: CTCACAGATAGAGAACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGGATCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp GATTCTCGGAGAAGCCGGGTCTCCCTTACTCGATGCTaGAGCCTTCCGAGGGCTGTAGTAAACTTGAGTTCT +
Preference number: 6 (lower is better)
Translates to: DSRRSRVSLTRC*SLPRAVVNLSS
Trigger: AGAACTCAAGTTTACTACAGCCCTCGGAAGGCTTCAGCATCGAGTAAGGGAGACCCGGCTTCTCCGAGAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp GCATGGTGGCCAGGTCCTCACTTGGACCAGGACCATTaGCAGGAGGGTCTATCAAATTCTGCAGAGACACTT +
Preference number: 6 (lower is better)
Translates to: AWWPGPHLDQDH*QEGLSNSAETL
Trigger: AAGTGTCTCTGCAGAATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp GCTCACAGCGCTTTATTTTCTTCAGGAGCAGGTTCTTaGACAGGGCGGAGCAGCAGTTGCTGGGAATGCTGT +
Preference number: 6 (lower is better)
Translates to: AHSALFSSGAGS*TGRSSSCWECC
Trigger: ACAGCATTCCCAGCAACTGCTGCTCCGCCCTGTTCAAGAACCTGCTCCTGAAGAAAATAAAGCGCTGTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp TCCTTATTGAACTGTGACCAGGACACACAGCGGTGCTaGAAGGCCTCCACACTGAGGCTGTTGTCGTTGAAG +
Preference number: 6 (lower is better)
Translates to: SLLNCDQDTQRC*KASTLRLLSLK
Trigger: CTTCAACGACAACAGCCTCAGTGTGGAGGCCTTTCAGCACCGCTGTGTGTCCTGGTCACAGTTCAATAAGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp AAATTCTGCAGAGACACTTGTCCAGTCTTAGCCCCTTaGTGCAGAGATTCTCGGAGAAGCCGGGTCTCCCTT +
Preference number: 6 (lower is better)
Translates to: KFCRDTCPVLAP*CRDSRRSRVSL
Trigger: AAGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp CCTGAAGACGCTGGACTGTGGCAGAAAGTAGGGCACTaGCCATGTTGTAACAGAAAGCATCTGAACCGACCA +
Preference number: 6 (lower is better)
Translates to: PEDAGLWQKVGH*PCCNRKHLNRP
Trigger: TGGTCGGTTCAGATGCTTTCTGTTACAACATGGCCAGTGCCCTACTTTCTGCCACAGTCCAGCGTCTTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092074.12
ENSMUST00000120279.2
CDS CCA 72 bp AGGGCTGTAGTAAACTTGAGTTCTTCCTGCTTCCGATaGAAGGGCCCTGGCAGGTGGCGGAACTCTTCTATA +
Preference number: 6 (lower is better)
Translates to: RAVVNLSSSCFR*KGPGRWRNSSI
Trigger: TATAGAAGAGTTCCGCCACCTGCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp AGCATGGTGGCCAGGTCCTCACTTGGACCAGGACCATaGACAGGAGGGTCTATCAAATTCTGCAGAGACACT +
Preference number: 6 (lower is better)
Translates to: SMVARSSLGPGP*TGGSIKFCRDT
Trigger: AGTGTCTCTGCAGAATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 90 bp AGGGTCTATCAAATTCTGCAGAGACACTTGTCCAGTCTTAGCCCCTaGCTGCAGAGATTCTCGGAGAAGCCGGGTCTCCCTTACTCGATG +
Preference number: 6 (lower is better)
Translates to: RVYQILQRHLSSLSP*LQRFSEKPGLPYSM
Trigger: CATCGAGTAAGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGAATTTGATAGACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp AGTGGATGGACTGTGGAGGATACCCCATATCTGAGCTaGGTTGCATGGAAGCATCAGGGGCCATTCCAAGAT +
Preference number: 6 (lower is better)
Translates to: SGWTVEDTPYLS*VAWKHQGPFQD
Trigger: ATCTTGGAATGGCCCCTGATGCTTCCATGCAACTCAGCTCAGATATGGGGTATCCTCCACAGTCCATCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CCA 72 bp TTGTCCCATAGGATGGTAGCTTTGGCGTTGTTGTCTTaGTTACCATGCACGATGACCACCAAGGGCAGAGAC +
Preference number: 6 (lower is better)
Translates to: LSHRMVALALLS*LPCTMTTKGRD
Trigger: GTCTCTGCCCTTGGTGGTCATCGTGCATGGTAACCAAGACAACAACGCCAAAGCTACCATCCTATGGGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp ACCACAAAGGGCACTCGGTCCATCTCAGAGAAGGCATaGTCCCATAGGATGGTAGCTTTGGCGTTGTTGTCT +
Preference number: 6 (lower is better)
Translates to: TTKGTRSISEKA*SHRMVALALLS
Trigger: AGACAACAACGCCAAAGCTACCATCCTATGGGACAATGCCTTCTCTGAGATGGACCGAGTGCCCTTTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp ATTGACAGGAGGGTCTATCAAATTCTGCAGAGACACTaGTCCAGTCTTAGCCCCTTGCTGCAGAGATTCTCG +
Preference number: 6 (lower is better)
Translates to: IDRRVYQILQRH*SSLSPLLQRFS
Trigger: CGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGAATTTGATAGACCCTCCTGTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp ATATTGCTTACTAATAAAGCCAATGATCAGCCGATCTaGCCAGTAGCTCCGGAGACAGCGTTTGGTGAGGTC +
Preference number: 6 (lower is better)
Translates to: ILLTNKANDQPI*PVAPETAFGEV
Trigger: GACCTCACCAAACGCTGTCTCCGGAGCTACTGGTCAGATCGGCTGATCATTGGCTTTATTAGTAAGCAATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS TCA 72 bp AAAGATGGCAGTACACTCATGGACTCTTCTAGGCTCTaGAATGAGTGGATGGACTGTGGAGGATACCCCATA +
Preference number: 6 (lower is better)
Translates to: KDGSTLMDSSRL*NEWMDCGGYPI
Trigger: TATGGGGTATCCTCCACAGTCCATCCACTCATTTCAGAGCCTAGAAGAGTCCATGAGTGTACTGCCATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS CAA 72 bp TCGCTAAAGCGGAGGAGGAAGGTCCCATCTGGCTCATaGAGGAGAAGGCTAGTGACATATTGCTTACTAATA +
Preference number: 6 (lower is better)
Translates to: SLKRRRKVPSGS*RRRLVTYCLLI
Trigger: TATTAGTAAGCAATATGTCACTAGCCTTCTCCTCAATGAGCCAGATGGGACCTTCCTCCTCCGCTTTAGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12
CDS GCA 72 bp CCATCTGGCTCATTGAGGAGAAGGCTAGTGACATATTaGTTACTAATAAAGCCAATGATCAGCCGATCTGAC +
Preference number: 6 (lower is better)
Translates to: PSGSLRRRLVTY*LLIKPMISRSD
Trigger: GTCAGATCGGCTGATCATTGGCTTTATTAGTAAGCAATATGTCACTAGCCTTCTCCTCAATGAGCCAGATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092074.12