RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STAT3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004040

Ensembl transcript IDs: ENSMUST00000092671.12, ENSMUST00000103114.8, ENSMUST00000127638.8, ENSMUST00000138438.2

Found 455 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTGAGCAGGCGCCTTGTCTGTGGCCTTTTCCTCAATTATCGTTGCTaGCTGCCCAGGGGCCCTGTAGCCACCAGCCAGGGAAGTGGCTGC +
Preference number: 1 (lower is better)
Translates to: VSRRLVCGLFLNYRC*LPRGPVATSQGSGC
Trigger: GCAGCCACTTCCCTGGCTGGTGGCTACAGGGCCCCTGGGCAGTCAGCAACGATAATTGAGGAAAAGGCCACAGACAAGGCGCCTGCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 90 bp CCCTGCCTCAGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTaGAGAGGCGGCACTGGTATCTCTCACCGAGGCACCCAGTGCAGG +
Preference number: 1 (lower is better)
Translates to: PCLSRAKNTDPCFHL*RGGTGISHRGTQCR
Trigger: CCTGCACTGGGTGCCTCGGTGAGAGATACCAGTGCCGCCTCTGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 90 bp GGCCAAGGAGAGGGAAAGTGGGCAGTTCCAGGGGCTCACTATGGGTaGTTAACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAA +
Preference number: 1 (lower is better)
Translates to: GQGEGKWAVPGAHYG*LTQAHRLPRAPEVQ
Trigger: TTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGTTAACCACCCATAGTGAGCCCCTGGAACTGCCCACTTTCCCTCTCCTTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 90 bp GGAGGAGGCCACTCTGACACTGTCCTGCCACTGGACTATGACCTCTaGCTCCTGGGTCACCTCTTCTGGAGGACGGTAGCTGATGTAAGG +
Preference number: 1 (lower is better)
Translates to: GGGHSDTVLPLDYDL*LLGHLFWRTVADVR
Trigger: CCTTACATCAGCTACCGTCCTCCAGAAGAGGTGACCCAGGAGCCAGAGGTCATAGTCCAGTGGCAGGACAGTGTCAGAGTGGCCTCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 90 bp AAGCAATCACAGGGGCCAGGGCCAGAGTGCCTGTCAACCTTCCTGTaGCCAAGGGCATTAGAGAGCCTGGACAACAGCCCTTCATCCCCT +
Preference number: 1 (lower is better)
Translates to: KQSQGPGPECLSTFL*PRALESLDNSPSSP
Trigger: AGGGGATGAAGGGCTGTTGTCCAGGCTCTCTAATGCCCTTGGCCACAGGAAGGTTGACAGGCACTCTGGCCCTGGCCCCTGTGATTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 90 bp CTGCAAGTTGTCCCCACTGTAAAGAAGGTGATAATGGGCCAACTGTaGAAGGAGAGGCCTTGGTCTACACCCCAGCCCTCCCGCCCTCCA +
Preference number: 1 (lower is better)
Translates to: LQVVPTVKKVIMGQL*KERPWSTPQPSRPP
Trigger: TGGAGGGCGGGAGGGCTGGGGTGTAGACCAAGGCCTCTCCTTCCACAGTTGGCCCATTATCACCTTCTTTACAGTGGGGACAACTTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 90 bp AGTCTGGGTTGGGGAGGGAGTAGGGTGATGACAAAGGCTTTCCAGTaGCCTTGGCCTACCTCACACCTCCAACCGACAAGCATACTGGGT +
Preference number: 1 (lower is better)
Translates to: SLGWGGSRVMTKAFQ*PWPTSHLQPTSILG
Trigger: ACCCAGTATGCTTGTCGGTTGGAGGTGTGAGGTAGGCCAAGGGCACTGGAAAGCCTTTGTCATCACCCTACTCCCTCCCCAACCCAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 90 bp GGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTaGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAA +
Preference number: 1 (lower is better)
Translates to: GPEAGIPNRSRTEGL*TWEGDILPARSSGK
Trigger: TTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR GCA 90 bp CAGAGGCCAAGCCACAGCTCTCGGATCTCTTTTACAGATTTGATCTaGAACCATTCCAGGGTTTATATAGATGATCAGCCTGAAGACAGC +
Preference number: 1 (lower is better)
Translates to: QRPSHSSRISFTDLI*NHSRVYIDDQPEDS
Trigger: GCTGTCTTCAGGCTGATCATCTATATAAACCCTGGAATGGTTGCAGATCAAATCTGTAAAAGAGATCCGAGAGCTGTGGCTTGGCCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR GCA 90 bp ATACACCACTCATATGAGGGCAGACCTGGAGTATATGTCAGCTTTTaGCCTGTGGTTACAGATATCCCTGGGAACCAAGCGCATAGAATA +
Preference number: 1 (lower is better)
Translates to: IHHSYEGRPGVYVSF*PVVTDIPGNQAHRI
Trigger: TATTCTATGCGCTTGGTTCCCAGGGATATCTGTAACCACAGGGCAAAAGCTGACATATACTCCAGGTCTGCCCTCATATGAGTGGTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR TCA 90 bp TATATAGATGATCAGCCTGAAGACAGCGCTGGAGAGGCTGTTAACTaGGTATTCCTTGATATGGAAAGGCTATGCTGTGTCAGTGTGTTT +
Preference number: 1 (lower is better)
Translates to: YIDDQPEDSAGEAVN*VFLDMERLCCVSVF
Trigger: AAACACACTGACACAGCATAGCCTTTCCATATCAAGGAATACTCAGTTAACAGCCTCTCCAGCGCTGTCTTCAGGCTGATCATCTATATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTaGACCCTAGGCCCAGTAAGGCACCCACAGGGCAGGCTGACCCTG +
Preference number: 2 (lower is better)
Translates to: KGTYYQQGQVGKEGR*TLGPVRHPQGRLTL
Trigger: CAGGGTCAGCCTGCCCTGTGGGTGCCTTACTGGGCCTAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp GGTGCAGGAACTGTGTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTAGGAGGTGTTCCCCTTaGTCCCTTCTGCTCTCAGCC +
Preference number: 2 (lower is better)
Translates to: GAGTVFHLTWETQWGADSRRCSP*SLLLSA
Trigger: GGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCT...ACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAACACAGTTCCTGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp ACTTGTCTAACAACCAACCCCGAGCTGCTGAAAAAGGAGGGCAGGCGGGCAGGAAGGAGGTGTTCCCCTTaGTCCCTTCTGCTCTCAGCC +
Preference number: 2 (lower is better)
Translates to: TCLTTNPELLKKEGRRAGRRCSP*SLLLSA
Trigger: GGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCT...TCCTGCCCGCCTGCCCTCCTTTTTCAGCAGCTCGGGGTTGGTTGTTAGACAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR TCA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATAAACTGCCCTCCTGCTaGGGGCTCAGCACCTTCACC +
Preference number: 2 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHKLPSC*GLSTFT
Trigger: GGTGAAGGTGCTGAGCCCTCAGCAGGAGGGCAGTTT...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR TCA 90 bp TGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGAAGGACCATACTCCCTaGGCTTTGCTGAGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: WESSNCLEAEGWGGQGKQKDHTP*ALLRAC
Trigger: ACAGGCCCTCAGCAAAGCTCAGGGAGTATGGTCCTT...CTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CCA 90 bp TGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGGACAGAGGGCCTTTaGACATGGGAAGGGGACATA +
Preference number: 2 (lower is better)
Translates to: WGGRAVTVSKQKAGVVKARTEGL*TWEGDI
Trigger: TATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCT...TGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp GGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGAAAAAGTGCCCAGATTaGCCAAAGATAGCAGAAGTA +
Preference number: 2 (lower is better)
Translates to: GGQAGRTGGVPLAPFCSQKKCPD*PKIAEV
Trigger: TACTTCTGCTATCTTTGGGCAATCTGGGCACTTTTT...CTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTGTCTGGAGTCTGGGTTaGGGAGGGAGTAGGGTGATG +
Preference number: 2 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPVWSLG*GGSRVM
Trigger: CATCACCCTACTCCCTCCCCAACCCAGACTCCAGAC...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 90 bp CTCTGGCACCCAGGTACAATTAGTCCAGGACTCAGGGTTGGAGCCTaGGACTTAAAGAGCACACTCCTGGGCTGGAGTGAGCAGGTAAGA +
Preference number: 2 (lower is better)
Translates to: LWHPGTISPGLRVGA*DLKSTLLGWSEQVR
Trigger: TCTTACCTGCTCACTCCAGCCCAGGAGTGTGCTCTTTAAGTCCAAGGCTCCAACCCTGAGTCCTGGACTAATTGTACCTGGGTGCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR GCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATAAAAAGTGCCCAGATTaGCCAAAGATAGCAGAAGTA +
Preference number: 2 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHKKCPD*PKIAEV
Trigger: TACTTCTGCTATCTTTGGGCAATCTGGGCACTTTTT...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR TCA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGAGGAGAGGCTGTTAACTaGGTATTCCTTGATATGGAA +
Preference number: 2 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRGEAVN*VFLDME
Trigger: TTCCATATCAAGGAATACTCAGTTAACAGCCTCTCC...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp GGAAGGCAGGTTGACCCTAGGCCCAGTAAGGCACCCACAGGGCAGGCTGACCCTTTTACAGATTTGATCTaGAACCATTCCAGGGTTTAT +
Preference number: 2 (lower is better)
Translates to: GRQVDPRPSKAPTGQADPFTDLI*NHSRVY
Trigger: ATAAACCCTGGAATGGTTGCAGATCAAATCTGTAAA...AGGGTCAGCCTGCCCTGTGGGTGCCTTACTGGGCCTAGGGTCAACCTGCCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CCA 90 bp CACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGGTCCTAGCTTCTATGTaGATATTAGCAAGGTTGAAA +
Preference number: 2 (lower is better)
Translates to: HLTWETQWGADSCQSQGRVLASM*ILARLK
Trigger: TTTCAACCTTGCTAATATCCACATAGAAGCTAGGAC...CCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 90 bp GAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTaGAAAGTGCAGAGCCAGGAGTTCCCAGCCTGGGGTATCAGCTCA +
Preference number: 2 (lower is better)
Translates to: EPLGLVLASMWILAR*KVQSQEFPAWGISS
Trigger: TGAGCTGATACCCCAGGCTGGGAACTCCTGGCTCTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 90 bp TGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTaGGAGACAATGTCCTCACTGCCCTTAATTCAGACACTGGTTAAC +
Preference number: 2 (lower is better)
Translates to: CLEAEGWGGQGKQFV*ETMSSLPLIQTLVN
Trigger: GTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGGTGAGCGACTCAAACTaGCCTCCTGCTGAGGGCTCA +
Preference number: 2 (lower is better)
Translates to: PLGLVLASMWILARLKVQVSDSN*PPAEGS
Trigger: TGAGCCCTCAGCAGGAGGGCAGTTTGAGTCGCTCAC...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CCA 90 bp TGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGCAGACACTGGTTAACTaGAAGGAAACAATTCCACAG +
Preference number: 2 (lower is better)
Translates to: WESSNCLEAEGWGGQGKQQTLVN*KETIPQ
Trigger: CTGTGGAATTGTTTCCTTCCAGTTAACCAGTGTCTG...CTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR TCA 90 bp AGAAGCAGGACAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGGGAGAGGCTGTTAACTaGGTATTCCTTGATATGGAA +
Preference number: 2 (lower is better)
Translates to: RSRTEGLWTWEGDILPARGEAVN*VFLDME
Trigger: TTCCATATCAAGGAATACTCAGTTAACAGCCTCTCC...CCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR TCA 90 bp CCTGGGTCCCCAGGATTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATCTAGCCTTTGTGTTTaGACCAGAGGCCAAGCCACA +
Preference number: 2 (lower is better)
Translates to: PGSPGLKAIKMPKPCLPKSSLCV*TRGQAT
Trigger: TGTGGCTTGGCCTCTGGTTCAAACACAAAGGCTAGA...TTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAATCCTGGGGACCCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR TCA 90 bp CTTGCCTTGAACACTCAGTGTTCCAGTAAGCTGAGTGAGCGAAGCAAGCAAGCGAATACACCACTCATATaGGGGCAGACCTGGAGTATA +
Preference number: 2 (lower is better)
Translates to: LALNTQCSSKLSERSKQANTPLI*GQTWSI
Trigger: TATACTCCAGGTCTGCCCTCATATGAGTGGTGTATT...CGCTTGCTTGCTTCGCTCACTCAGCTTACTGGAACACTGAGTGTTCAAGGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATTTTACAGATTTGATCTaGAACCATTCCAGGGTTTAT +
Preference number: 2 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHFTDLI*NHSRVY
Trigger: ATAAACCCTGGAATGGTTGCAGATCAAATCTGTAAA...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CCA 90 bp CCTGGGTCCCCAGGATTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAAGAGTATTCCTTGATATaGAAAGGCTATGCTGTGTCA +
Preference number: 2 (lower is better)
Translates to: PGSPGLKAIKMPKPCLPKEYSLI*KGYAVS
Trigger: TGACACAGCATAGCCTTTCCATATCAAGGAATACTC...TTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAATCCTGGGGACCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAAAAAAGTGCCCAGATTaGCCAAAGATAGCAGAAGTA +
Preference number: 2 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPKKCPD*PKIAEV
Trigger: TACTTCTGCTATCTTTGGGCAATCTGGGCACTTTTT...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR GCA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTAGATATGGAAAGGCTATaGTGTGTCAGTGTGTTTTGC +
Preference number: 2 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLDMERL*CVSVFC
Trigger: GCAAAACACACTGACACAGCATAGCCTTTCCATATC...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAGTCCTAGCTTCTATGTaGATATTAGCAAGGTTGAAA +
Preference number: 2 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPVLASM*ILARLK
Trigger: TTTCAACCTTGCTAATATCCACATAGAAGCTAGGAC...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp CAGGGGCCAGGGCCAGAGTGCCTGTCAACCTTCCTGTaGCCAAGGGCATTAGAGAGCCTGGACAACAGCCCT +
Preference number: 3 (lower is better)
Translates to: QGPGPECLSTFL*PRALESLDNSP
Trigger: AGGGCTGTTGTCCAGGCTCTCTAATGCCCTTGGCCACAGGAAGGTTGACAGGCACTCTGGCCCTGGCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CAA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGACAGGAGGTGTTCCCCTaGCTCCCTTCTGCTCTCAGC +
Preference number: 3 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRQEVFP*LPSALS
Trigger: GCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTG...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR GCA 72 bp GGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTaGAGCTTCTGGTTTCAGCTCCTCACATGGGGGAGG +
Preference number: 3 (lower is better)
Translates to: GGARGRCLKSRL*SFWFQLLTWGR
Trigger: CCTCCCCCATGTGAGGAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp GCAGGGTGGCTGGGGATTGGAAGCAGGGTCTGGCCCTaGCTCAGTCGTGCTAAGAACACTGATCCCTGCTTC +
Preference number: 3 (lower is better)
Translates to: AGWLGIGSRVWP*LSRAKNTDPCF
Trigger: GAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGGCCAGACCCTGCTTCCAATCCCCAGCCACCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp CAGCCCCCTAAGCAATCACAGGGGCCAGGGCCAGAGTaGCTGTCAACCTTCCTGTGGCCAAGGGCATTAGAG +
Preference number: 3 (lower is better)
Translates to: QPPKQSQGPGPE*LSTFLWPRALE
Trigger: CTCTAATGCCCTTGGCCACAGGAAGGTTGACAGGCACTCTGGCCCTGGCCCCTGTGATTGCTTAGGGGGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CAA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGAGGAAAGGAAGGCAGGTaGACCCTAGGCCCAGTAAGG +
Preference number: 3 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRGKEGR*TLGPVR
Trigger: CCTTACTGGGCCTAGGGTCAACCTGCCTTCCTTTCC...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR TCA 72 bp GTGGTTAACCCAGGCACACAGACTTCCCAGAGCCCCTaGGGTACAACACCAGCCCCAGAGAAGCCCTCACCT +
Preference number: 3 (lower is better)
Translates to: VVNPGTQTSQSP*GTTPAPEKPSP
Trigger: AGGTGAGGGCTTCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGTTAACCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp GAGGGAAAGTGGGCAGTTCCAGGGGCTCACTATGGGTaGTTAACCCAGGCACACAGACTTCCCAGAGCCCCT +
Preference number: 3 (lower is better)
Translates to: EGKWAVPGAHYG*LTQAHRLPRAP
Trigger: AGGGGCTCTGGGAAGTCTGTGTGCCTGGGTTAACCACCCATAGTGAGCCCCTGGAACTGCCCACTTTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CAA 90 bp CAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGACAGGAGGTGTTCCCCTaGCTCCCTTCTGCTCTCAGC +
Preference number: 3 (lower is better)
Translates to: QRAFGHGKGTYYQQGQVGQEVFP*LPSALS
Trigger: GCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTG...TCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR TCA 72 bp ACCCCAGCCCTCCCGCCCTCCATTAGGGAGCTTATCTaGCTCCAGAACAAACACAGCAGCTTTGGGAGGGCA +
Preference number: 3 (lower is better)
Translates to: TPALPPSIRELI*LQNKHSSFGRA
Trigger: TGCCCTCCCAAAGCTGCTGTGTTTGTTCTGGAGTCAGATAAGCTCCCTAATGGAGGGCGGGAGGGCTGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp TGGGGAGGGAGTAGGGTGATGACAAAGGCTTTCCAGTaGCCTTGGCCTACCTCACACCTCCAACCGACAAGC +
Preference number: 3 (lower is better)
Translates to: WGGSRVMTKAFQ*PWPTSHLQPTS
Trigger: GCTTGTCGGTTGGAGGTGTGAGGTAGGCCAAGGGCACTGGAAAGCCTTTGTCATCACCCTACTCCCTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp AGGAGAGGGAAAGTGGGCAGTTCCAGGGGCTCACTATaGGTGGTTAACCCAGGCACACAGACTTCCCAGAGC +
Preference number: 3 (lower is better)
Translates to: RRGKVGSSRGSL*VVNPGTQTSQS
Trigger: GCTCTGGGAAGTCTGTGTGCCTGGGTTAACCACCCATAGTGAGCCCCTGGAACTGCCCACTTTCCCTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp CACTCTGACACTGTCCTGCCACTGGACTATGACCTCTaGCTCCTGGGTCACCTCTTCTGGAGGACGGTAGCT +
Preference number: 3 (lower is better)
Translates to: HSDTVLPLDYDL*LLGHLFWRTVA
Trigger: AGCTACCGTCCTCCAGAAGAGGTGACCCAGGAGCCAGAGGTCATAGTCCAGTGGCAGGACAGTGTCAGAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp AGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTaGAGAGGCGGCACTGGTATCTCTCACCGAGGCACC +
Preference number: 3 (lower is better)
Translates to: SRAKNTDPCFHL*RGGTGISHRGT
Trigger: GGTGCCTCGGTGAGAGATACCAGTGCCGCCTCTGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp GAGAAAGCAAAGGAAACTAGTCAGGACAGAGAGGCCTaGCTTGCCCTAGCTGGACCTCTGGCACCCAGGTAC +
Preference number: 3 (lower is better)
Translates to: EKAKETSQDREA*LALAGPLAPRY
Trigger: GTACCTGGGTGCCAGAGGTCCAGCTAGGGCAAGGCAGGCCTCTCTGTCCTGACTAGTTTCCTTTGCTTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 72 bp GGTCACCTCTTCTGGAGGACGGTAGCTGATGTAAGGTaGGGGGCCTGCATCACCCTGGGAATGAGAAGCAAA +
Preference number: 3 (lower is better)
Translates to: GHLFWRTVADVR*GACITLGMRSK
Trigger: TTTGCTTCTCATTCCCAGGGTGATGCAGGCCCCCCACCTTACATCAGCTACCGTCCTCCAGAAGAGGTGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CAA 90 bp CCTGGGTCCCCAGGATTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAAATGGGGAGCAGACAGTaGCCAGTCTCAGGGGAGGCC +
Preference number: 3 (lower is better)
Translates to: PGSPGLKAIKMPKPCLPKMGSRQ*PVSGEA
Trigger: GGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCAT...TTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAATCCTGGGGACCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CAA 90 bp GGAAGGCAGGTTGACCCTAGGCCCAGTAAGGCACCCACAGGGCAGGCTGACCCTATCTCTTTTACAGATTaGATCTGCAACCATTCCAGG +
Preference number: 3 (lower is better)
Translates to: GRQVDPRPSKAPTGQADPISFTD*ICNHSR
Trigger: CCTGGAATGGTTGCAGATCAAATCTGTAAAAGAGAT...AGGGTCAGCCTGCCCTGTGGGTGCCTTACTGGGCCTAGGGTCAACCTGCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp GCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTaGACATGGGAAGGGGACATACTACCAGCAAGGTCA +
Preference number: 3 (lower is better)
Translates to: AGIPNRSRTEGL*TWEGDILPARS
Trigger: TGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp GTTGGAGCCTTGGACTTAAAGAGCACACTCCTGGGCTaGAGTGAGCAGGTAAGAGCACTGACTGCTCTTCCA +
Preference number: 3 (lower is better)
Translates to: VGALDLKSTLLG*SEQVRALTALP
Trigger: TGGAAGAGCAGTCAGTGCTCTTACCTGCTCACTCCAGCCCAGGAGTGTGCTCTTTAAGTCCAAGGCTCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp CCCTTCTGCTCTCAGCCCCATCCCCAGACTCAGAGGTaGTCTCCTCTTTACATAACAGTTTATCACCCACAC +
Preference number: 3 (lower is better)
Translates to: PFCSQPHPQTQR*SPLYITVYHPH
Trigger: GTGTGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGAGAGCAGAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp ATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATaGGAAGGGGACATACTACCAGCAAGGTCAAGTGGG +
Preference number: 3 (lower is better)
Translates to: IPNRSRTEGLWT*EGDILPARSSG
Trigger: CCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR TCA 72 bp ACCACATGGTGGCTCACAACCACCTGTAACAAGATCTaGCACCTTCTTCTGGCGCATCTGAGGACAGCTACA +
Preference number: 3 (lower is better)
Translates to: TTWWLTTTCNKI*HLLLAHLRTAT
Trigger: TGTAGCTGTCCTCAGATGCGCCAGAAGAAGGTGTCAGATCTTGTTACAGGTGGTTGTGAGCCACCATGTGGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 72 bp AGGGCAGACCTGGAGTATATGTCAGCTTTTGCCCTGTaGTTACAGATATCCCTGGGAACCAAGCGCATAGAA +
Preference number: 3 (lower is better)
Translates to: RADLEYMSAFAL*LQISLGTKRIE
Trigger: TTCTATGCGCTTGGTTCCCAGGGATATCTGTAACCACAGGGCAAAAGCTGACATATACTCCAGGTCTGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR-3UTR CAA 90 bp TCTGGCCCTGCCTCAGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTGCAATCTCTTTTACAGATTaGATCTGCAACCATTCCAGG +
Preference number: 3 (lower is better)
Translates to: SGPASVVLRTLIPASISAISFTD*ICNHSR
Trigger: CCTGGAATGGTTGCAGATCAAATCTGTAAAAGAGAT...TGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGGCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CAA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAGGAAAGGAAGGCAGGTaGACCCTAGGCCCAGTAAGG +
Preference number: 3 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPGKEGR*TLGPVR
Trigger: CCTTACTGGGCCTAGGGTCAACCTGCCTTCCTTTCC...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR TCA 72 bp GATCAGCCTGAAGACAGCGCTGGAGAGGCTGTTAACTaGGTATTCCTTGATATGGAAAGGCTATGCTGTGTC +
Preference number: 3 (lower is better)
Translates to: DQPEDSAGEAVN*VFLDMERLCCV
Trigger: GACACAGCATAGCCTTTCCATATCAAGGAATACTCAGTTAACAGCCTCTCCAGCGCTGTCTTCAGGCTGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR GCA 72 bp TTCCCAATTTTAGCTTGGAGTTATCTCTGCTCCCTCTaGTGTGATCTTAAGGGTGCTGCTGCCCTAAAGCAG +
Preference number: 3 (lower is better)
Translates to: FPILAWSYLCSL*CDLKGAAALKQ
Trigger: CTGCTTTAGGGCAGCAGCACCCTTAAGATCACAGCAGAGGGAGCAGAGATAACTCCAAGCTAAAATTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CAA 90 bp CTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTTAACTGAGTATTCCTaGATATGGAAAGGCTATGCT +
Preference number: 3 (lower is better)
Translates to: LEAEGWGGQGKQFVLETMLTEYS*IWKGYA
Trigger: AGCATAGCCTTTCCATATCAAGGAATACTCAGTTAA...CATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp GCGCTGGAGAGGCTGTTAACTGAGTATTCCTTGATATaGAAAGGCTATGCTGTGTCAGTGTGTTTTGCCCTT +
Preference number: 3 (lower is better)
Translates to: ALERLLTEYSLI*KGYAVSVCFAL
Trigger: AAGGGCAAAACACACTGACACAGCATAGCCTTTCCATATCAAGGAATACTCAGTTAACAGCCTCTCCAGCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp CTAAACACTCTCTCTCTCTCTGTGTGTGTGTGTGTGTaGTGTATGTGTGTATTTGTTAGGGGCTACATGCCC +
Preference number: 3 (lower is better)
Translates to: LNTLSLSVCVCV*CMCVFVRGYMP
Trigger: GGGCATGTAGCCCCTAACAAATACACACATACACCACACACACACACACACAGAGAGAGAGAGAGTGTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR-3UTR CAA 90 bp CCTGGGTCCCCAGGATTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAAAGTATATGTCAGCTTTaGCCCTGTGGTTACAGATAT +
Preference number: 3 (lower is better)
Translates to: PGSPGLKAIKMPKPCLPKSICQL*PCGYRY
Trigger: ATATCTGTAACCACAGGGCAAAAGCTGACATATACT...TTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAATCCTGGGGACCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CCA 72 bp TTGGTTTGGTTTTTGCAAATCTACCAGTCTGCTTCCTaGTTTACTGGGCTGTGTGATGGATGGGCTTTTCAC +
Preference number: 3 (lower is better)
Translates to: LVWFLQIYQSAS*FTGLCDGWAFH
Trigger: GTGAAAAGCCCATCCATCACACAGCCCAGTAAACCAGGAAGCAGACTGGTAGATTTGCAAAAACCAAACCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 72 bp TACAGTGTACTTGTGTATAGTAATAATTCTTTGGGCTaGAGCCAGCCGAGGTCCTCAAATTCAACTCCCAAC +
Preference number: 3 (lower is better)
Translates to: YSVLVYSNNSLG*SQPRSSNSTPN
Trigger: GTTGGGAGTTGAATTTGAGGACCTCGGCTGGCTCCAGCCCAAAGAATTATTACTATACACAAGTACACTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR CCA 72 bp ACAGCTACAGTGTACTTGTGTATAGTAATAATTCTTTaGGCTGGAGCCAGCCGAGGTCCTCAAATTCAACTC +
Preference number: 3 (lower is better)
Translates to: TATVYLCIVIIL*AGASRGPQIQL
Trigger: GAGTTGAATTTGAGGACCTCGGCTGGCTCCAGCCCAAAGAATTATTACTATACACAAGTACACTGTAGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR TCA 72 bp AATCTACCAGTCTGCTTCCTGGTTTACTGGGCTGTGTaGTGGATGGGCTTTTCACTAAAGTTGAAGTTTTGT +
Preference number: 3 (lower is better)
Translates to: NLPVCFLVYWAV*WMGFSLKLKFC
Trigger: ACAAAACTTCAACTTTAGTGAAAAGCCCATCCATCACACAGCCCAGTAAACCAGGAAGCAGACTGGTAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
3UTR GCA 72 bp AGCCACAGCTCTCGGATCTCTTTTACAGATTTGATCTaGAACCATTCCAGGGTTTATATAGATGATCAGCCT +
Preference number: 3 (lower is better)
Translates to: SHSSRISFTDLI*NHSRVYIDDQP
Trigger: AGGCTGATCATCTATATAAACCCTGGAATGGTTGCAGATCAAATCTGTAAAAGAGATCCGAGAGCTGTGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR TCA 72 bp TTTATAAGTTCAGCTTATTGTATAACTAAAGAACATTaGTGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAG +
Preference number: 3 (lower is better)
Translates to: FISSAYCITKEH*WGGRAVTVSKQ
Trigger: CTGCTTCGAGACAGTTACTGCTCTCCCACCCCATCAATGTTCTTTAGTTATACAATAAGCTGAACTTATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATAAGGGCCGGTCCGGGTaGATGGGCATGCAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHKGRSG*MGMQGC
Trigger: GCAGCCCTGCATGCCCATGCACCCGGACCGGCCCTT...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATGTTGGGTGGTTGGCCTaGCCCCCTTGCTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHVGWLA*PPCWAA
Trigger: GGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAAC...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCACGGCGGCTGTTGGGTaGTTGGCCTGGCCCCCTTGC +
Preference number: 4 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALTAAVG*LAWPPC
Trigger: GCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGT...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAGGGTCGGCTTCGGGGTaGTCCTGGCTCTCGGGCCTA +
Preference number: 4 (lower is better)
Translates to: LTWETQWGADSCQSQGRPGSASG*SWLSGL
Trigger: TAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCC...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTACGGCGGCTGTTGGGTaGTTGGCCTGGCCCCCTTGC +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSTAAVG*LAWPPC
Trigger: GCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGT...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCAGCCCCCGCTTGGTaGTGGACGAGAACTGCCAGC +
Preference number: 4 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPSAPAW*WTRTAS
Trigger: GCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGA...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCACCGGGTGCATGGGCATaGAGGGCTGCCGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAPGAWA*RAAAPP
Trigger: TGGTGGAGCGGCAGCCCTGCATGCCCATGCACCCGG...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAGGGTCGGCTTCGGGGTaGTCCTGGCTCTCGGGCCTA +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAGSASG*SWLSGL
Trigger: TAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCC...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGCACTACGGCGGCTGTTaGGTGGTTGGCCTGGCCCCC +
Preference number: 4 (lower is better)
Translates to: VPPHLGDPMGSRQLPVSGHYGGC*VVGLAP
Trigger: GGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTG...CCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCACGTACTCCATTGCTaGCAAGAGCCCCGCCAGCTC +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHHVLHC*QEPRQL
Trigger: GAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTG...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCACGAGAACTGCCAGCTaGGCACCTCGGCCACTTGGT +
Preference number: 4 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALTRTAS*APRPLG
Trigger: ACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGT...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAGCCAGCGTTGTCAGCTaGTCGATGCTCAGCCCCCGC +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAASVVS*SMLSPR
Trigger: GCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGC...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCCGGCTGTTGGGTGGTTaGCCTGGCCCCCTTGCTGGG +
Preference number: 4 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLRLLGG*PGPLAG
Trigger: CCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCG...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCGCTTTGTGCTTAGGATaGCCCGCTCCCGCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALALCLG*PAPAPC
Trigger: GCAAGGAGCGGGAGCGGGCCATCCTAAGCACAAAGC...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCCTCAGTCTCGAAGGTaGTCAGGTGCAGCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHPQSRR*SGAAPQ
Trigger: CTGAGGAGCTGCACCTGATCACCTTCGAGACTGAGG...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAATGGGCATGCAGGGCTaGCGCTCCACCACGAAGGCA +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAMGMQG*RSTTKA
Trigger: TGCCTTCGTGGTGGAGCGGCAGCCCTGCATGCCCAT...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGAATGGGCATGCAGGGCTaGCGCTCCACCACGAAGGCA +
Preference number: 4 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRMGMQG*RSTTKA
Trigger: TGCCTTCGTGGTGGAGCGGCAGCCCTGCATGCCCAT...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCACCATTCCCACATCTCTaGTCCCTAAGGGTCAGGTGC +
Preference number: 4 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPPFPHL*SLRVRC
Trigger: GCACCTGACCCTTAGGGAGCAGAGATGTGGGAATGG...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ACTTGTCTAACAACCAACCCCGAGCTGCTGAAAAAGGAGGGCAGGCGGGCAGGACGGCTGTTGGGTGGTTaGCCTGGCCCCCTTGCTGGG +
Preference number: 4 (lower is better)
Translates to: TCLTTNPELLKKEGRRAGRLLGG*PGPLAG
Trigger: CCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCG...TCCTGCCCGCCTGCCCTCCTTTTTCAGCAGCTCGGGGTTGGTTGTTAGACAAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCACACCAACGTGGCATGTaGCTCTTTGCTGGCTGCATA +
Preference number: 4 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPHQRGM*LFAGCI
Trigger: TATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTG...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCAAACTGCCCTCCTGCTaGGGGCTCAGCACCTTCACC +
Preference number: 4 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFKLPSC*GLSTFT
Trigger: GGTGAAGGTGCTGAGCCCTCAGCAGGAGGGCAGTTT...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGAAGGCAGGTTGACCCTAGGCCCAGTAAGGCACCCACAGGGCAGGCTGACCCTACTCTCAATCCAAGGTaGCAGGAACTGCCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: GRQVDPRPSKAPTGQADPTLNPR*QELPQL
Trigger: GAGCTGCGGCAGTTCCTGGCACCTTGGATTGAGAGT...AGGGTCAGCCTGCCCTGTGGGTGCCTTACTGGGCCTAGGGTCAACCTGCCTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCATGCACGCGATCTGCTaGCGCCTCTTCCAGTCAGCC +
Preference number: 4 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFMHAIC*RLFQSA
Trigger: GGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCAT...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAATGCACGCGATCTGCTaGCGCCTCTTCCAGTCAGCC +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAMHAIC*RLFQSA
Trigger: GGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCAT...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAAGGGCCGGTCCGGGTaGATGGGCATGCAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GEQTVASLRGGQEYTTHMKGRSG*MGMQGC
Trigger: GCAGCCCTGCATGCCCATGCACCCGGACCGGCCCTT...CATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAGTGGTGGACGAGAACTaGCAGCTGAGCACCTCGGCC +
Preference number: 4 (lower is better)
Translates to: WGGRAVTVSKQKAGVVKAVVDEN*QLSTSA
Trigger: GGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCAC...TGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGATTGTCAGCTGCTCGATaGTCAGCCCCCGCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRLSAAR*SAPAWW
Trigger: CCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAA...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TCTGGCCCTGCCTCAGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTGCACACTACGGCGGCTGTTaGGTGGTTGGCCTGGCCCCC +
Preference number: 4 (lower is better)
Translates to: SGPASVVLRTLIPASISAHYGGC*VVGLAP
Trigger: GGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTG...TGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGGCCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR CCA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATGCCGGTCCGGGTGCATaGGCATGCAGGGCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHAGPGA*ACRAAA
Trigger: AGCGGCAGCCCTGCATGCCCATGCACCCGGACCGGC...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTAGCACCTCGGCCACTTaGTCCCAGGTTCCAATTGGC +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSSTSAT*SQVPIG
Trigger: GCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCT...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGGCTTTGTGCTTAGGATaGCCCGCTCCCGCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: FHLTWETQWGADSCQSQGALCLG*PAPAPC
Trigger: GCAAGGAGCGGGAGCGGGCCATCCTAAGCACAAAGC...CCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCAAATGCCTCCTCCTTaGGAATGTCGGGGTAGAGGT +
Preference number: 4 (lower is better)
Translates to: GGQAGRTGGVPLAPFCSQQMPPP*ECRGRG
Trigger: ACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTG...CTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCACCAACGTGGCATGTaGCTCTTTGCTGGCTGCATA +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHHQRGM*LFAGCI
Trigger: TATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTG...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCCCTCAGTCTCGAAGGTaGTCAGGTGCAGCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFPQSRR*SGAAPQ
Trigger: CTGAGGAGCTGCACCTGATCACCTTCGAGACTGAGG...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCTCTAGGTCAATCTTaGGGCCTTGGTGGTACACCT +
Preference number: 4 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPSLGQS*GLGGTP
Trigger: AGGTGTACCACCAAGGCCTCAAGATTGACCTAGAGA...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCCAAGGTGCCAGGAACTaGCGCAGCTCCATGGGGAAG +
Preference number: 4 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLQGARN*RSSMGK
Trigger: CTTCCCCATGGAGCTGCGGCAGTTCCTGGCACCTTG...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCAGGTGCTTGAACTCTaGAGACAGGCTGCCGTTGTT +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHQVLEL*RQAAVV
Trigger: AACAACGGCAGCCTGTCTGCAGAGTTCAAGCACCTG...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTACGGCGGCTGTTGGGTaGTTGGCCTGGCCCCCTTGC +
Preference number: 4 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPTAAVG*LAWPPC
Trigger: GCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGT...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ACTTGTCTAACAACCAACCCCGAGCTGCTGAAAAAGGAGGGCAGGCGGGCAGGAGGTCCAGGCAGATGTTaGGAGGGCCTCCGATGCACG +
Preference number: 4 (lower is better)
Translates to: TCLTTNPELLKKEGRRAGGPGRC*EGLRCT
Trigger: CGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACC...TCCTGCCCGCCTGCCCTCCTTTTTCAGCAGCTCGGGGTTGGTTGTTAGACAAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGCCGGTCCGGGTGCATaGGCATGCAGGGCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVAGPGA*ACRAAA
Trigger: AGCGGCAGCCCTGCATGCCCATGCACCCGGACCGGC...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCGCTTTGTGCTTAGGATaGCCCGCTCCCGCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLALCLG*PAPAPC
Trigger: GCAAGGAGCGGGAGCGGGCCATCCTAAGCACAAAGC...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCATATGCCCAGTCTTaGCTCTCAATCCAAGGTGCC +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSAYAQS*LSIQGA
Trigger: GGCACCTTGGATTGAGAGTCAAGACTGGGCATATGC...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATTCTCTAGGTCAATCTTaGGGCCTTGGTGGTACACCT +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHSLGQS*GLGGTP
Trigger: AGGTGTACCACCAAGGCCTCAAGATTGACCTAGAGA...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCATCTGGGTCTTGCCACTaGTGTCCTTTTCCACCCAAG +
Preference number: 4 (lower is better)
Translates to: LTWETQWGADSCQSQGRPSGSCH*CPFPPK
Trigger: CTTGGGTGGAAAAGGACATCAGTGGCAAGACCCAGA...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATTGCTGCTCCAACATCTaGTGCTTCTCTGTCACTACG +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHCCSNI*CFSVTT
Trigger: CGTAGTGACAGAGAAGCAGCAGATGTTGGAGCAGCA...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGAAGGCAGGTTGACCCTAGGCCCAGTAAGGCACCCACAGGGCAGGCTGACCCTTGCTGCTCCAACATCTaGTGCTTCTCTGTCACTACG +
Preference number: 4 (lower is better)
Translates to: GRQVDPRPSKAPTGQADPCCSNI*CFSVTT
Trigger: CGTAGTGACAGAGAAGCAGCAGATGTTGGAGCAGCA...AGGGTCAGCCTGCCCTGTGGGTGCCTTACTGGGCCTAGGGTCAACCTGCCTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTACCGGGTGCATGGGCATaGAGGGCTGCCGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLPGAWA*RAAAPP
Trigger: TGGTGGAGCGGCAGCCCTGCATGCCCATGCACCCGG...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTTCGAAGGTGATCAGGTaGAGCTCCTCAGTCACGATC +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSSKVIR*SSSVTI
Trigger: GATCGTGACTGAGGAGCTGCACCTGATCACCTTCGA...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAGCCAGCGTTGTCAGCTaGTCGATGCTCAGCCCCCGC +
Preference number: 4 (lower is better)
Translates to: GLWTWEGDILPARSSGKGASVVS*SMLSPR
Trigger: GCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGC...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCGCTGATAGAGGACATTaGACTCTTGCAGGAATCGGC +
Preference number: 4 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALADRGH*TLAGIG
Trigger: GCCGATTCCTGCAAGAGTCCAATGTCCTCTATCAGC...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAGCCGTGGCTGCCGTCTaGAGGAGGCGAGACTCTTCC +
Preference number: 4 (lower is better)
Translates to: RGPLDMGRGHTTSKVKWEAVAAV*RRRDSS
Trigger: GGAAGAGTCTCGCCTCCTCCAGACGGCAGCCACGGC...TTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGATGCTTCTCCGCATCTaGTCCAGGGCTGTGAGCATC +
Preference number: 4 (lower is better)
Translates to: VPPHLGDPMGSRQLPVSGMLLRI*SRAVSI
Trigger: GATGCTCACAGCCCTGGACCAGATGCGGAGAAGCAT...CCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATCAGCCCCCGCTTGGTaGTGGACGAGAACTGCCAGC +
Preference number: 4 (lower is better)
Translates to: VSKQKAGVVKASSSSWRQSAPAW*WTRTAS
Trigger: GCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGA...TTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTCAAATGCCTCCTCCTTaGGAATGTCGGGGTAGAGGT +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSQMPPP*ECRGRG
Trigger: ACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTG...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TCTGGCCCTGCCTCAGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTGCACACGTACTCCATTGCTaGCAAGAGCCCCGCCAGCTC +
Preference number: 4 (lower is better)
Translates to: SGPASVVLRTLIPASISAHVLHC*QEPRQL
Trigger: GAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTG...TGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGGCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR TCA 90 bp GGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGTTTTCACAAGGTCGATaGTATTGTCTAGCCAGACCC +
Preference number: 4 (lower is better)
Translates to: GGQAGRTGGVPLAPFCSQFSQGR*YCLARP
Trigger: GGGTCTGGCTAGACAATATCATCGACCTTGTGAAAA...CTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACAAGGGCCGGTCCGGGTaGATGGGCATGCAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: QPHPQTQRCSPLYITVYHKGRSG*MGMQGC
Trigger: GCAGCCCTGCATGCCCATGCACCCGGACCGGCCCTT...GTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGATGTTGTTCAGCTGCTaGTTGGTGTATGGCTCTACA +
Preference number: 4 (lower is better)
Translates to: GGQAGRTGGVPLAPFCSQMLFSC*LVYGST
Trigger: TGTAGAGCCATACACCAAGCAGCAGCTGAACAACAT...CTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCCGGGCAATTTCCATTaGCTTCTCAAGATACCTGCT +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHPGNFH*LLKIPA
Trigger: AGCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGG...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATAAATCAAAGTCGTCCTaGAGGTTCTCCACCACCTTC +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHKSKSS*RFSTTF
Trigger: GAAGGTGGTGGAGAACCTCCAGGACGACTTTGATTT...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTGGTCCAGGCAGATGTTaGGAGGGCCTCCGATGCACG +
Preference number: 4 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPGPGRC*EGLRCT
Trigger: CGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACC...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTATCTTGAGGCCTTGGTaGTACACCTCAGTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSILRPW*YTSVSK
Trigger: CTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGAT...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAATCTTGAGGCCTTGGTaGTACACCTCAGTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: LTWETQWGADSCQSQGRPILRPW*YTSVSK
Trigger: CTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGAT...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCACAACTGGCAAGGAGTaGGTCTCTAGGTCAATCTTG +
Preference number: 4 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALTTGKE*VSRSIL
Trigger: CAAGATTGACCTAGAGACCCACTCCTTGCCAGTTGT...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATGTCCCAGGTTCCAATTaGCGGCTTAGTGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHVPGSN*RLSEEV
Trigger: AACTTCTTCACTAAGCCGCCAATTGGAACCTGGGAC...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGTATGGCTCTACAGACTaGATCTGGGTCTTGCCACTG +
Preference number: 4 (lower is better)
Translates to: HLTWETQWGADSCQSQGRYGSTD*IWVLPL
Trigger: CAGTGGCAAGACCCAGATCCAGTCTGTAGAGCCATA...CCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 72 bp TACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTaGACCCTAGGCCCAGTAAGGCACCCACAGGGCAGG +
Preference number: 4 (lower is better)
Translates to: YYQQGQVGKEGR*TLGPVRHPQGR
Trigger: CCTGCCCTGTGGGTGCCTTACTGGGCCTAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAACACGTACTCCATTGCTaGCAAGAGCCCCGCCAGCTC +
Preference number: 4 (lower is better)
Translates to: RGPLDMGRGHTTSKVKWEHVLHC*QEPRQL
Trigger: GAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTG...TTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAACGAGAACTGCCAGCTaGGCACCTCGGCCACTTGGT +
Preference number: 4 (lower is better)
Translates to: GLWTWEGDILPARSSGKGTRTAS*APRPLG
Trigger: ACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGT...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAGGGCAGACCAAGGTGCCAGGAACTaGCGCAGCTCCATGGGGAAG +
Preference number: 4 (lower is better)
Translates to: TVASLRGGQEYTTHMRADQGARN*RSSMGK
Trigger: CTTCCCCATGGAGCTGCGGCAGTTCCTGGCACCTTG...GTCTGCCCTCATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTATGCACGCGATCTGCTaGCGCCTCTTCCAGTCAGCC +
Preference number: 4 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPMHAIC*RLFQSA
Trigger: GGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCAT...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTCCGATGCACGCGATCTaGTGCCGCCTCTTCCAGTCA +
Preference number: 4 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPPMHAI*CRLFQS
Trigger: TGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGG...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGACCGATGCACGCGATCTaGTGCCGCCTCTTCCAGTCA +
Preference number: 4 (lower is better)
Translates to: GLWTWEGDILPARSSGKGPMHAI*CRLFQS
Trigger: TGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGG...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GACACTGTCCTGCCACTGGACTATGACCTCTGGCTCCTGGGTCACCTCTTCTGGCAGGTGCTTGAACTCTaGAGACAGGCTGCCGTTGTT +
Preference number: 4 (lower is better)
Translates to: DTVLPLDYDLWLLGHLFWQVLEL*RQAAVV
Trigger: AACAACGGCAGCCTGTCTGCAGAGTTCAAGCACCTG...CCAGAAGAGGTGACCCAGGAGCCAGAGGTCATAGTCCAGTGGCAGGACAGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR GCA 90 bp CAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACGCCAGCGTTGTCAGCTaGTCGATGCTCAGCCCCCGC +
Preference number: 4 (lower is better)
Translates to: QPHPQTQRCSPLYITVYHASVVS*SMLSPR
Trigger: GCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGC...GTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGGTGAGCGACTCAAACTaGCCTCCTGCTGAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: LEAEGWGGQGKQFVLETMVSDSN*PPAEGS
Trigger: TGAGCCCTCAGCAGGAGGGCAGTTTGAGTCGCTCAC...CATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAGCCGTGGCTGCCGTCTaGAGGAGGCGAGACTCTTCC +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPAVAAV*RRRDSS
Trigger: GGAAGAGTCTCGCCTCCTCCAGACGGCAGCCACGGC...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGGTCCAGGCAGATGTTaGGAGGGCCTCCGATGCACG +
Preference number: 4 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVGPGRC*EGLRCT
Trigger: CGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACC...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCAACTTTCGTGGTAAACTaGACACCAGTCTTGATGACT +
Preference number: 4 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPTFVVN*TPVLMT
Trigger: AGTCATCAAGACTGGTGTCCAGTTTACCACGAAAGT...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTACAACTGGCAAGGAGTaGGTCTCTAGGTCAATCTTG +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSTTGKE*VSRSIL
Trigger: CAAGATTGACCTAGAGACCCACTCCTTGCCAGTTGT...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAACAACTGGCAAGGAGTaGGTCTCTAGGTCAATCTTG +
Preference number: 4 (lower is better)
Translates to: LTWETQWGADSCQSQGRPTTGKE*VSRSIL
Trigger: CAAGATTGACCTAGAGACCCACTCCTTGCCAGTTGT...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGTGCAGGAACTGTGTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTCTCTAGGTCAATCTTaGGGCCTTGGTGGTACACCT +
Preference number: 4 (lower is better)
Translates to: GAGTVFHLTWETQWGADSSLGQS*GLGGTP
Trigger: AGGTGTACCACCAAGGCCTCAAGATTGACCTAGAGA...ACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAACACAGTTCCTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCACGAGAACTGCCAGCTaGGCACCTCGGCCACTTGGT +
Preference number: 4 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPTRTAS*APRPLG
Trigger: ACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGT...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAGTGGTGGACGAGAACTaGCAGCTGAGCACCTCGGCC +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPVVDEN*QLSTSA
Trigger: GGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCAC...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGTTGTCAGCTGCTCGATaGTCAGCCCCCGCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVLSAAR*SAPAWW
Trigger: CCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAA...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAGACATGTTGTTCAGCTaGTGCTTGGTGTATGGCTCT +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWADMLFS*CLVYGS
Trigger: AGAGCCATACACCAAGCAGCAGCTGAACAACATGTC...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGCCGGGCAATTTCCATTaGCTTCTCAAGATACCTGCT +
Preference number: 4 (lower is better)
Translates to: FHLTWETQWGADSCQSQGPGNFH*LLKIPA
Trigger: AGCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGG...CCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCAGCCGTGGCTGCCGTCTaGAGGAGGCGAGACTCTTCC +
Preference number: 4 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSAVAAV*RRRDSS
Trigger: GGAAGAGTCTCGCCTCCTCCAGACGGCAGCCACGGC...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGCACTACGGCGGCTGTTaGGTGGTTGGCCTGGCCCCC +
Preference number: 4 (lower is better)
Translates to: PLGLVLASMWILARLKVQHYGGC*VVGLAP
Trigger: GGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTG...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAAATCAAAGTCGTCCTaGAGGTTCTCCACCACCTTC +
Preference number: 4 (lower is better)
Translates to: FHLTWETQWGADSCQSQGKSKSS*RFSTTF
Trigger: GAAGGTGGTGGAGAACCTCCAGGACGACTTTGATTT...CCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAGCTGCATCTTCTGTCTaGTCACAGACTGGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAAASSV*SQTGCF
Trigger: GAAACAACCAGTCTGTGACCAGACAGAAGATGCAGC...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATACTTTCGTGGTAAACTaGACACCAGTCTTGATGACT +
Preference number: 4 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHTFVVN*TPVLMT
Trigger: AGTCATCAAGACTGGTGTCCAGTTTACCACGAAAGT...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCCTGCTGCTTGGTGTATaGCTCTACAGACTGGATCTG +
Preference number: 4 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLLLLGV*LYRLDL
Trigger: CAGATCCAGTCTGTAGAGCCATACACCAAGCAGCAG...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCATGTTCAGCTGCTGCTTaGTGTATGGCTCTACAGACT +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWACSAAA*CMALQT
Trigger: AGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACA...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AGAAGCAGGACAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGGCATATGCCCAGTCTTaGCTCTCAATCCAAGGTGCC +
Preference number: 4 (lower is better)
Translates to: RSRTEGLWTWEGDILPARAYAQS*LSIQGA
Trigger: GGCACCTTGGATTGAGAGTCAAGACTGGGCATATGC...CCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCCAAGCATTTGGCATCTaGCAGATGTTGGAGATCACC +
Preference number: 4 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLQAFGI*QMLEIT
Trigger: GGTGATCTCCAACATCTGTCAGATGCCAAATGCTTG...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AGAAGCAGGACAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCTGGGTCTTGCCACTaGTGTCCTTTTCCACCCAAG +
Preference number: 4 (lower is better)
Translates to: RSRTEGLWTWEGDILPARSGSCH*CPFPPK
Trigger: CTTGGGTGGAAAAGGACATCAGTGGCAAGACCCAGA...CCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGATGATTTCAGCAAATaGCATGTTGTTCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSDDFSK*HVVQLL
Trigger: CAGCAGCTGAACAACATGTCATTTGCTGAAATCATC...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAAGGAATCGGCTATATTaGTGGTCAATTTCACCCAAG +
Preference number: 4 (lower is better)
Translates to: LTWETQWGADSCQSQGRPRNRLY*WSISPK
Trigger: CTTGGGTGAAATTGACCAGCAATATAGCCGATTCCT...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCTCAAGATACCTGCTCTaGAGAAACTGCTTGATTCTT +
Preference number: 4 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALSRYLL*RNCLIL
Trigger: AAGAATCAAGCAGTTTCTGCAGAGCAGGTATCTTGA...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGTGCAGGAACTGTGTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTATCTGTTCCAGCTGCTaGATCTTCTGTCTGGTCACA +
Preference number: 4 (lower is better)
Translates to: GAGTVFHLTWETQWGADSICSSC*IFCLVT
Trigger: TGTGACCAGACAGAAGATGCAGCAGCTGGAACAGAT...ACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAACACAGTTCCTGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCATTGTCAGCTGCTCGATaGTCAGCCCCCGCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPLSAAR*SAPAWW
Trigger: CCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAA...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGAACAGTACTTTCCAAATaGCTCCTCCTTGGGAATGTC +
Preference number: 4 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRTVLSK*LLLGNV
Trigger: GACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGT...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTAACTGCCGCAGCTCCATaGGGAAGCTGTCGCTGTACA +
Preference number: 4 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLTAAAP*GSCRCT
Trigger: TGTACAGCGACAGCTTCCCCATGGAGCTGCGGCAGT...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGGCTGATAGAGGACATTaGACTCTTGCAGGAATCGGC +
Preference number: 4 (lower is better)
Translates to: WESSNCLEAEGWGGQGKQADRGH*TLAGIG
Trigger: GCCGATTCCTGCAAGAGTCCAATGTCCTCTATCAGC...CTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCAAATCAAAGTCGTCCTaGAGGTTCTCCACCACCTTC +
Preference number: 4 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLKSKSS*RFSTTF
Trigger: GAAGGTGGTGGAGAACCTCCAGGACGACTTTGATTT...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAGCCGGTCCGGGTGCATaGGCATGCAGGGCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPAGPGA*ACRAAA
Trigger: AGCGGCAGCCCTGCATGCCCATGCACCCGGACCGGC...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAACTTTCGTGGTAAACTaGACACCAGTCTTGATGACT +
Preference number: 4 (lower is better)
Translates to: LTWETQWGADSCQSQGRPTFVVN*TPVLMT
Trigger: AGTCATCAAGACTGGTGTCCAGTTTACCACGAAAGT...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAGCACCTCGGCCACTTaGTCCCAGGTTCCAATTGGC +
Preference number: 4 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPSTSAT*SQVPIG
Trigger: GCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCT...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ATCTGGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGTCAGCCCCCGCTTGGTaGTGGACGAGAACTGCCAGC +
Preference number: 4 (lower is better)
Translates to: IWNHKVRSFRRYGVRLLRSAPAW*WTRTAS
Trigger: GCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGA...CCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCCAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAATTGCTGCAGGTCGTTaGTGTCACACAGATGAACTT +
Preference number: 4 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAIAAGR*CHTDEL
Trigger: AAGTTCATCTGTGTGACACCAACGACCTGCAGCAAT...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCATTTTCACAAGGTCGATaGTATTGTCTAGCCAGACCC +
Preference number: 4 (lower is better)
Translates to: WGGRAVTVSKQKAGVVKAFSQGR*YCLARP
Trigger: GGGTCTGGCTAGACAATATCATCGACCTTGTGAAAA...TGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCACCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCAGGAATCGGCTATATTaGTGGTCAATTTCACCCAAG +
Preference number: 4 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFRNRLY*WSISPK
Trigger: CTTGGGTGAAATTGACCAGCAATATAGCCGATTCCT...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTGGGTAAACAAAACCCAGGGATATCTAGGTTCTCTCTAGCCTTTGTGTTTGAACCGGGTGCATGGGCATaGAGGGCTGCCGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: LGKQNPGISRFSLAFVFEPGAWA*RAAAPP
Trigger: TGGTGGAGCGGCAGCCCTGCATGCCCATGCACCCGG...TTCAAACACAAAGGCTAGAGAGAACCTAGATATCCCTGGGTTTTGTTTACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCACCATTCCCACATCTCTaGTCCCTAAGGGTCAGGTGC +
Preference number: 4 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGAPFPHL*SLRVRC
Trigger: GCACCTGACCCTTAGGGAGCAGAGATGTGGGAATGG...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGGTGGTGGACGAGAACTaGCAGCTGAGCACCTCGGCC +
Preference number: 4 (lower is better)
Translates to: PLGLVLASMWILARLKVQVVDEN*QLSTSA
Trigger: GGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCAC...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGTGAGCGACTCAAACTaGCCTCCTGCTGAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: NHKVRSFRRYGVRLLRGGVSDSN*PPAEGS
Trigger: TGAGCCCTCAGCAGGAGGGCAGTTTGAGTCGCTCAC...TCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAACTGCCGCAGCTCCATaGGGAAGCTGTCGCTGTACA +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPTAAAP*GSCRCT
Trigger: TGTACAGCGACAGCTTCCCCATGGAGCTGCGGCAGT...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCATATGAAACACCAACGTaGCATGTGACTCTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: WGGRAVTVSKQKAGVVKAYETPT*HVTLCW
Trigger: CCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATA...TGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCACCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CTGGGTAAACAAAACCCAGGGATATCTAGGTTCTCTCTAGCCTTTGTGTTTGAAGTTGGGTGGTTGGCCTaGCCCCCTTGCTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: LGKQNPGISRFSLAFVFEVGWLA*PPCWAA
Trigger: GGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAAC...TTCAAACACAAAGGCTAGAGAGAACCTAGATATCCCTGGGTTTTGTTTACCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCACGGCTGTTGGGTGGTTaGCCTGGCCCCCTTGCTGGG +
Preference number: 4 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPRLLGG*PGPLAG
Trigger: CCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCG...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TCTGGCCCTGCCTCAGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTGCATCAATCTTGAGGCCTTaGTGGTACACCTCAGTCTCG +
Preference number: 4 (lower is better)
Translates to: SGPASVVLRTLIPASISASILRP*WYTSVS
Trigger: CGAGACTGAGGTGTACCACCAAGGCCTCAAGATTGA...TGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGGCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR CCA 90 bp CAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACAGCACCTCGGCCACTTaGTCCCAGGTTCCAATTGGC +
Preference number: 4 (lower is better)
Translates to: QPHPQTQRCSPLYITVYHSTSAT*SQVPIG
Trigger: GCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCT...GTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGTATGGCTCTACAGACTaGATCTGGGTCTTGCCACTG +
Preference number: 4 (lower is better)
Translates to: VTVSKQKAGVVKASSSSWYGSTD*IWVLPL
Trigger: CAGTGGCAAGACCCAGATCCAGTCTGTAGAGCCATA...CCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AGAAGCAGGACAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGCTGCTGCTTGGTGTATaGCTCTACAGACTGGATCTG +
Preference number: 4 (lower is better)
Translates to: RSRTEGLWTWEGDILPARLLLGV*LYRLDL
Trigger: CAGATCCAGTCTGTAGAGCCATACACCAAGCAGCAG...CCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGACAAATGCCTCCTCCTTaGGAATGTCGGGGTAGAGGT +
Preference number: 4 (lower is better)
Translates to: GLWTWEGDILPARSSGKGQMPPP*ECRGRG
Trigger: ACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTG...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 72 bp GCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTaGGAGACAATGTCCTCACTGCCCTTAATTCAGACA +
Preference number: 4 (lower is better)
Translates to: AEGWGGQGKQFV*ETMSSLPLIQT
Trigger: TGTCTGAATTAAGGGCAGTGAGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 72 bp CAGAGAAGCCCTCACCTTGTTCCTGGGTCCCCAGGATaGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCT +
Preference number: 4 (lower is better)
Translates to: QRSPHLVPGSPG*KAIKMPKPCLP
Trigger: AGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAATCCTGGGGACCCAGGAACAAGGTGAGGGCTTCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCGCATATGCCCAGTCTTaGCTCTCAATCCAAGGTGCC +
Preference number: 4 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPAYAQS*LSIQGA
Trigger: GGCACCTTGGATTGAGAGTCAAGACTGGGCATATGC...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp ACTTGTCTAACAACCAACCCCGAGCTGCTGAAAAAGGAGGGCAGGCGGGCAGGATCTGCAGAAACTGCTTaGTTCTTCGAAGGTTGTGCT +
Preference number: 4 (lower is better)
Translates to: TCLTTNPELLKKEGRRAGSAETA*FFEGCA
Trigger: AGCACAACCTTCGAAGAATCAAGCAGTTTCTGCAGA...TCCTGCCCGCCTGCCCTCCTTTTTCAGCAGCTCGGGGTTGGTTGTTAGACAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCGCTTCCGGACATCCTaGAGATGCTGCTCCAACATC +
Preference number: 4 (lower is better)
Translates to: QPHPQTQRCSPLYITVYHRFRTS*RCCSNI
Trigger: GATGTTGGAGCAGCATCTTCAGGATGTCCGGAAGCG...GTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCTCAGTCTCGAAGGTaGTCAGGTGCAGCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSPQSRR*SGAAPQ
Trigger: CTGAGGAGCTGCACCTGATCACCTTCGAGACTGAGG...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGACAAGCATTTGGCATCTaGCAGATGTTGGAGATCACC +
Preference number: 4 (lower is better)
Translates to: QRAFGHGKGTYYQQGQVGQAFGI*QMLEIT
Trigger: GGTGATCTCCAACATCTGTCAGATGCCAAATGCTTG...TCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAACTCTCAATCCAAGGTaGCAGGAACTGCCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: NHKVRSFRRYGVRLLRGGTLNPR*QELPQL
Trigger: GAGCTGCGGCAGTTCCTGGCACCTTGGATTGAGAGT...TCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTAGGCCCAGTATGCTGCTCCAACATCTaGTGCTTCTCTGTCACTACG +
Preference number: 4 (lower is better)
Translates to: YYQQGQVGKEGRLTLGPVCCSNI*CFSVTT
Trigger: CGTAGTGACAGAGAAGCAGCAGATGTTGGAGCAGCA...TACTGGGCCTAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGCCGATGCACGCGATCTaGTGCCGCCTCTTCCAGTCA +
Preference number: 4 (lower is better)
Translates to: PLGLVLASMWILARLKVQPMHAI*CRLFQS
Trigger: TGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGG...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CACTCCGAGGTCAGATCCATGTCAAACGTGAGCGACTCAAACTGCCCTCCTGCTGACATGTTGTTCAGCTaGTGCTTGGTGTATGGCTCT +
Preference number: 4 (lower is better)
Translates to: HSEVRSMSNVSDSNCPPADMLFS*CLVYGS
Trigger: AGAGCCATACACCAAGCAGCAGCTGAACAACATGTC...AGCAGGAGGGCAGTTTGAGTCGCTCACGTTTGACATGGATCTGACCTCGGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR GCA 90 bp ACTTGTCTAACAACCAACCCCGAGCTGCTGAAAAAGGAGGGCAGGCGGGCAGGAACAGTACTTTCCAAATaGCTCCTCCTTGGGAATGTC +
Preference number: 4 (lower is better)
Translates to: TCLTTNPELLKKEGRRAGTVLSK*LLLGNV
Trigger: GACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGT...TCCTGCCCGCCTGCCCTCCTTTTTCAGCAGCTCGGGGTTGGTTGTTAGACAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAGGGCAGACGGTCAATGGTATTGCTaGAGGTCGTTGGTGTCACAC +
Preference number: 4 (lower is better)
Translates to: TVASLRGGQEYTTHMRADGQWYC*RSLVSH
Trigger: GTGTGACACCAACGACCTGCAGCAATACCATTGACC...GTCTGCCCTCATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTGCTGATAGAGGACATTaGACTCTTGCAGGAATCGGC +
Preference number: 4 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPADRGH*TLAGIG
Trigger: GCCGATTCCTGCAAGAGTCCAATGTCCTCTATCAGC...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAAGCTGCATCTTCTGTCTaGTCACAGACTGGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: VSKQKAGVVKASSSSWRQAASSV*SQTGCF
Trigger: GAAACAACCAGTCTGTGACCAGACAGAAGATGCAGC...TTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAATGCTTCTCCGCATCTaGTCCAGGGCTGTGAGCATC +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPMLLRI*SRAVSI
Trigger: GATGCTCACAGCCCTGGACCAGATGCGGAGAAGCAT...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AGAAGCAGGACAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGGTCCCAGGTTCCAATTaGCGGCTTAGTGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: RSRTEGLWTWEGDILPARVPGSN*RLSEEV
Trigger: AACTTCTTCACTAAGCCGCCAATTGGAACCTGGGAC...CCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CACTCCGAGGTCAGATCCATGTCAAACGTGAGCGACTCAAACTGCCCTCCTGCTTGTTCAGCTGCTGCTTaGTGTATGGCTCTACAGACT +
Preference number: 4 (lower is better)
Translates to: HSEVRSMSNVSDSNCPPACSAAA*CMALQT
Trigger: AGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACA...AGCAGGAGGGCAGTTTGAGTCGCTCACGTTTGACATGGATCTGACCTCGGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR CCA 90 bp AGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAACATCGGCAGGTCAATaGTATTGCTGCAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: RGPLDMGRGHTTSKVKWETSAGQ*YCCRSL
Trigger: CAACGACCTGCAGCAATACCATTGACCTGCCGATGT...TTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCTGCAGAAACTGCTTaGTTCTTCGAAGGTTGTGCT +
Preference number: 4 (lower is better)
Translates to: LEAEGWGGQGKQFVLETMSAETA*FFEGCA
Trigger: AGCACAACCTTCGAAGAATCAAGCAGTTTCTGCAGA...CATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGACAAGCATTTGGCATCTaGCAGATGTTGGAGATCACC +
Preference number: 4 (lower is better)
Translates to: GLWTWEGDILPARSSGKGQAFGI*QMLEIT
Trigger: GGTGATCTCCAACATCTGTCAGATGCCAAATGCTTG...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAGGGCAGACCTGGATTTCCATTCAGATCCTaGATGTCTCCTTGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: CQSQGRPRIHHSYEGRPGFPFRS*MSPWLL
Trigger: CAAGAGCCAAGGAGACATGCAGGATCTGAATGGAAA...TCCAGGTCTGCCCTCATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATTCAGTCAGTGTCTTCTaGACGTACTCCATTGCTGAC +
Preference number: 4 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHSVSVF*TYSIAD
Trigger: GTCAGCAATGGAGTACGTGCAGAAGACACTGACTGA...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAATGGGCATGCAGGGCTaGCGCTCCACCACGAAGGCA +
Preference number: 4 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPMGMQG*RSTTKA
Trigger: TGCCTTCGTGGTGGAGCGGCAGCCCTGCATGCCCAT...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAATGTTGTTCAGCTGCTaGTTGGTGTATGGCTCTACA +
Preference number: 4 (lower is better)
Translates to: QRAFGHGKGTYYQQGQVGMLFSC*LVYGST
Trigger: TGTAGAGCCATACACCAAGCAGCAGCTGAACAACAT...TCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CACTCCGAGGTCAGATCCATGTCAAACGTGAGCGACTCAAACTGCCCTCCTGCTACAGTACTTTCCAAATaGCTCCTCCTTGGGAATGTC +
Preference number: 4 (lower is better)
Translates to: HSEVRSMSNVSDSNCPPATVLSK*LLLGNV
Trigger: GACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGT...AGCAGGAGGGCAGTTTGAGTCGCTCACGTTTGACATGGATCTGACCTCGGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR GCA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTAGGGTCGGCTTCGGGGTaGTCCTGGCTCTCGGGCCTA +
Preference number: 4 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLGSASG*SWLSGL
Trigger: TAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCC...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCGGTCAATGGTATTGCTaGAGGTCGTTGGTGTCACAC +
Preference number: 4 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPGQWYC*RSLVSH
Trigger: GTGTGACACCAACGACCTGCAGCAATACCATTGACC...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGACTGCCGCAGCTCCATaGGGAAGCTGTCGCTGTACA +
Preference number: 4 (lower is better)
Translates to: PLGLVLASMWILARLKVQTAAAP*GSCRCT
Trigger: TGTACAGCGACAGCTTCCCCATGGAGCTGCGGCAGT...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATCCGGGCAATTTCCATTaGCTTCTCAAGATACCTGCT +
Preference number: 4 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHPGNFH*LLKIPA
Trigger: AGCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGG...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTAGTTGGGTGGTTGGCCTaGCCCCCTTGCTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLVGWLA*PPCWAA
Trigger: GGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAAC...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCAATGCTTCTCCGCATCTaGTCCAGGGCTGTGAGCATC +
Preference number: 4 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSMLLRI*SRAVSI
Trigger: GATGCTCACAGCCCTGGACCAGATGCGGAGAAGCAT...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTAATCTTGAGGCCTTGGTaGTACACCTCAGTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLILRPW*YTSVSK
Trigger: CTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGAT...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAGTCCCAGGTTCCAATTaGCGGCTTAGTGAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: RGPLDMGRGHTTSKVKWEVPGSN*RLSEEV
Trigger: AACTTCTTCACTAAGCCGCCAATTGGAACCTGGGAC...TTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAGGGCAGACTGTTCAGCTGCTGCTTaGTGTATGGCTCTACAGACT +
Preference number: 4 (lower is better)
Translates to: TVASLRGGQEYTTHMRADCSAAA*CMALQT
Trigger: AGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACA...GTCTGCCCTCATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 72 bp GGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTaGAAAGTGCAGAGCCAGGAGTTCCCAGCCTGGGGT +
Preference number: 4 (lower is better)
Translates to: GLVLASMWILAR*KVQSQEFPAWG
Trigger: ACCCCAGGCTGGGAACTCCTGGCTCTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 72 bp ACTGTAAGACAGGTTACCTCAGAGTTCCAATCATGTTaGGGGGAAGGAGCTCAGTTCACAGCCTGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: TVRQVTSEFQSC*GEGAQFTACPR
Trigger: CCTGGGACAGGCTGTGAACTGAGCTCCTTCCCCCAAACATGATTGGAACTCTGAGGTAACCTGTCTTACAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR TCA 90 bp GGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGTCTTCATTAAGTTTCTaGACAGCTCCACGATCCTCT +
Preference number: 4 (lower is better)
Translates to: GEQTVASLRGGQEYTTHMSSLSF*TAPRSS
Trigger: AGAGGATCGTGGAGCTGTTCAGAAACTTAATGAAGA...CATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCATCTGGGTCTTGCCACTaGTGTCCTTTTCCACCCAAG +
Preference number: 4 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSSGSCH*CPFPPK
Trigger: CTTGGGTGGAAAAGGACATCAGTGGCAAGACCCAGA...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGGATGATTTCAGCAAATaGCATGTTGTTCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GEQTVASLRGGQEYTTHMDDFSK*HVVQLL
Trigger: CAGCAGCTGAACAACATGTCATTTGCTGAAATCATC...CATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTATTGGTGTCACACAGATaGACTTGGTCTTCAGGTACG +
Preference number: 4 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLLVSHR*TWSSGT
Trigger: CGTACCTGAAGACCAAGTTCATCTGTGTGACACCAA...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGAAACTGCCCTCCTGCTaGGGGCTCAGCACCTTCACC +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARKLPSC*GLSTFT
Trigger: GGTGAAGGTGCTGAGCCCTCAGCAGGAGGGCAGTTT...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGCAAGGTGCCAGGAACTaGCGCAGCTCCATGGGGAAG +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARQGARN*RSSMGK
Trigger: CTTCCCCATGGAGCTGCGGCAGTTCCTGGCACCTTG...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTCAAGATACCTGCTCTaGAGAAACTGCTTGATTCTT +
Preference number: 4 (lower is better)
Translates to: WESSNCLEAEGWGGQGKQSRYLL*RNCLIL
Trigger: AAGAATCAAGCAGTTTCTGCAGAGCAGGTATCTTGA...CTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAATTTCCATTCAGATCCTaGATGTCTCCTTGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: RGPLDMGRGHTTSKVKWEFPFRS*MSPWLL
Trigger: CAAGAGCCAAGGAGACATGCAGGATCTGAATGGAAA...TTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCTCAGTCAGTGTCTTCTaGACGTACTCCATTGCTGAC +
Preference number: 4 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPSVSVF*TYSIAD
Trigger: GTCAGCAATGGAGTACGTGCAGAAGACACTGACTGA...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCATCGAAGGTGATCAGGTaGAGCTCCTCAGTCACGATC +
Preference number: 4 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSSKVIR*SSSVTI
Trigger: GATCGTGACTGAGGAGCTGCACCTGATCACCTTCGA...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTATGTTGTTCAGCTGCTaGTTGGTGTATGGCTCTACA +
Preference number: 4 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPMLFSC*LVYGST
Trigger: TGTAGAGCCATACACCAAGCAGCAGCTGAACAACAT...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCATCAATCTTGAGGCCTTaGTGGTACACCTCAGTCTCG +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPSILRP*WYTSVS
Trigger: CGAGACTGAGGTGTACCACCAAGGCCTCAAGATTGA...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGATCAATCTTGAGGCCTTaGTGGTACACCTCAGTCTCG +
Preference number: 4 (lower is better)
Translates to: NHKVRSFRRYGVRLLRGGSILRP*WYTSVS
Trigger: CGAGACTGAGGTGTACCACCAAGGCCTCAAGATTGA...TCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CTTGCCTTGAACACTCAGTGTTCCAGTAAGCTGAGTGAGCGAAGCAAGCAAGCGGTTATACCACAGGATTaGTGCCCAAGCATTTGGCAT +
Preference number: 4 (lower is better)
Translates to: LALNTQCSSKLSERSKQAVIPQD*CPSIWH
Trigger: ATGCCAAATGCTTGGGCATCAATCCTGTGGTATAAC...CGCTTGCTTGCTTCGCTCACTCAGCTTACTGGAACACTGAGTGTTCAAGGCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAATCTGTTCCAGCTGCTaGATCTTCTGTCTGGTCACA +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPICSSC*IFCLVT
Trigger: TGTGACCAGACAGAAGATGCAGCAGCTGGAACAGAT...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ATCTGGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGCAGGTCAATGGTATTaGTGCAGGTCGTTGGTGTCA +
Preference number: 4 (lower is better)
Translates to: IWNHKVRSFRRYGVRLLRAGQWY*CRSLVS
Trigger: TGACACCAACGACCTGCAGCAATACCATTGACCTGC...CCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATCGTTCTTGGGGTTATTaGTCAGCATGTTATACCACA +
Preference number: 4 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHRSWGY*SACYTT
Trigger: TGTGGTATAACATGCTGACCAATAACCCCAAGAACG...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp ATCTGGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGACATCGGCAGGTCAATaGTATTGCTGCAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: IWNHKVRSFRRYGVRLLRTSAGQ*YCCRSL
Trigger: CAACGACCTGCAGCAATACCATTGACCTGCCGATGT...CCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGATCTGCAGAAACTGCTTaGTTCTTCGAAGGTTGTGCT +
Preference number: 4 (lower is better)
Translates to: NHKVRSFRRYGVRLLRGGSAETA*FFEGCA
Trigger: AGCACAACCTTCGAAGAATCAAGCAGTTTCTGCAGA...TCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CTGGGTAAACAAAACCCAGGGATATCTAGGTTCTCTCTAGCCTTTGTGTTTGAACGCTTCCGGACATCCTaGAGATGCTGCTCCAACATC +
Preference number: 4 (lower is better)
Translates to: LGKQNPGISRFSLAFVFERFRTS*RCCSNI
Trigger: GATGTTGGAGCAGCATCTTCAGGATGTCCGGAAGCG...TTCAAACACAAAGGCTAGAGAGAACCTAGATATCCCTGGGTTTTGTTTACCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp AACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGATTTTCACAAGGTCGATaGTATTGTCTAGCCAGACCC +
Preference number: 4 (lower is better)
Translates to: NHKVRSFRRYGVRLLRGGFSQGR*YCLARP
Trigger: GGGTCTGGCTAGACAATATCATCGACCTTGTGAAAA...TCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGATGATTTCAGCAAATaGCATGTTGTTCAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVDDFSK*HVVQLL
Trigger: CAGCAGCTGAACAACATGTCATTTGCTGAAATCATC...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACTTTCCATTCAGATCCTaGATGTCTCCTTGGCTCTTG +
Preference number: 4 (lower is better)
Translates to: QPHPQTQRCSPLYITVYHFPFRS*MSPWLL
Trigger: CAAGAGCCAAGGAGACATGCAGGATCTGAATGGAAA...GTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGCCATTCCCACATCTCTaGTCCCTAAGGGTCAGGTGC +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARPFPHL*SLRVRC
Trigger: GCACCTGACCCTTAGGGAGCAGAGATGTGGGAATGG...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACTATGAAACACCAACGTaGCATGTGACTCTTTGCTGG +
Preference number: 4 (lower is better)
Translates to: QPHPQTQRCSPLYITVYHYETPT*HVTLCW
Trigger: CCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATA...GTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAATCGGCTATATTGCTaGTCAATTTCACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: GLWTWEGDILPARSSGKGNRLYC*SISPKR
Trigger: TCTCTTGGGTGAAATTGACCAGCAATATAGCCGATT...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCCGTTCTTGGGGTTATTaGTCAGCATGTTATACCACA +
Preference number: 4 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPRSWGY*SACYTT
Trigger: TGTGGTATAACATGCTGACCAATAACCCCAAGAACG...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTACGTTCTTGGGGTTATTaGTCAGCATGTTATACCACA +
Preference number: 4 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLRSWGY*SACYTT
Trigger: TGTGGTATAACATGCTGACCAATAACCCCAAGAACG...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCATCTTCATTAAGTTTCTaGACAGCTCCACGATCCTCT +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPSSLSF*TAPRSS
Trigger: AGAGGATCGTGGAGCTGTTCAGAAACTTAATGAAGA...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp ATCTGGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGTTATACCACAGGATTaGTGCCCAAGCATTTGGCAT +
Preference number: 4 (lower is better)
Translates to: IWNHKVRSFRRYGVRLLRVIPQD*CPSIWH
Trigger: ATGCCAAATGCTTGGGCATCAATCCTGTGGTATAAC...CCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGTCAAGATACCTGCTCTaGAGAAACTGCTTGATTCTT +
Preference number: 4 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVSRYLL*RNCLIL
Trigger: AAGAATCAAGCAGTTTCTGCAGAGCAGGTATCTTGA...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTGGGTAAACAAAACCCAGGGATATCTAGGTTCTCTCTAGCCTTTGTGTTTGAACAGGTGCTTGAACTCTaGAGACAGGCTGCCGTTGTT +
Preference number: 4 (lower is better)
Translates to: LGKQNPGISRFSLAFVFEQVLEL*RQAAVV
Trigger: AACAACGGCAGCCTGTCTGCAGAGTTCAAGCACCTG...TTCAAACACAAAGGCTAGAGAGAACCTAGATATCCCTGGGTTTTGTTTACCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGAATCGGCTATATTGCTaGTCAATTTCACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVNRLYC*SISPKR
Trigger: TCTCTTGGGTGAAATTGACCAGCAATATAGCCGATT...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGGCTGCATCTTCTGTCTaGTCACAGACTGGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: PLGLVLASMWILARLKVQAASSV*SQTGCF
Trigger: GAAACAACCAGTCTGTGACCAGACAGAAGATGCAGC...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAGCAGGTCAATGGTATTaGTGCAGGTCGTTGGTGTCA +
Preference number: 4 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPAGQWY*CRSLVS
Trigger: TGACACCAACGACCTGCAGCAATACCATTGACCTGC...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCAAATCGGCTATATTGCTaGTCAATTTCACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPNRLYC*SISPKR
Trigger: TCTCTTGGGTGAAATTGACCAGCAATATAGCCGATT...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTATGGCTCTACAGACTaGATCTGGGTCTTGCCACTG +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARYGSTD*IWVLPL
Trigger: CAGTGGCAAGACCCAGATCCAGTCTGTAGAGCCATA...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGGTGTCACACAGATaGACTTGGTCTTCAGGTACG +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARLVSHR*TWSSGT
Trigger: CGTACCTGAAGACCAAGTTCATCTGTGTGACACCAA...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp ATGTCCTCACTGCCCTTAATTCAGACACTGGTTAACTGGAAGGAAACAATTCCAATCTGTTCCAGCTGCTaGATCTTCTGTCTGGTCACA +
Preference number: 4 (lower is better)
Translates to: MSSLPLIQTLVNWKETIPICSSC*IFCLVT
Trigger: TGTGACCAGACAGAAGATGCAGCAGCTGGAACAGAT...TGGAATTGTTTCCTTCCAGTTAACCAGTGTCTGAATTAAGGGCAGTGAGGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp CTGGGTAAACAAAACCCAGGGATATCTAGGTTCTCTCTAGCCTTTGTGTTTGAAGACATGTTGTTCAGCTaGTGCTTGGTGTATGGCTCT +
Preference number: 4 (lower is better)
Translates to: LGKQNPGISRFSLAFVFEDMLFS*CLVYGS
Trigger: AGAGCCATACACCAAGCAGCAGCTGAACAACATGTC...TTCAAACACAAAGGCTAGAGAGAACCTAGATATCCCTGGGTTTTGTTTACCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
3UTR CAA 72 bp GACAGCTACAGTGTACTTGTGTATAGTAATAATTCTTaGGGCTGGAGCCAGCCGAGGTCCTCAAATTCAACT +
Preference number: 4 (lower is better)
Translates to: DSYSVLVYSNNS*GWSQPRSSNST
Trigger: AGTTGAATTTGAGGACCTCGGCTGGCTCCAGCCCAAAGAATTATTACTATACACAAGTACACTGTAGCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR TCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGGTTATACCACAGGATTaGTGCCCAAGCATTTGGCAT +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARVIPQD*CPSIWH
Trigger: ATGCCAAATGCTTGGGCATCAATCCTGTGGTATAAC...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp CTGGGTAAACAAAACCCAGGGATATCTAGGTTCTCTCTAGCCTTTGTGTTTGAAATTGCTGCAGGTCGTTaGTGTCACACAGATGAACTT +
Preference number: 4 (lower is better)
Translates to: LGKQNPGISRFSLAFVFEIAAGR*CHTDEL
Trigger: AAGTTCATCTGTGTGACACCAACGACCTGCAGCAAT...TTCAAACACAAAGGCTAGAGAGAACCTAGATATCCCTGGGTTTTGTTTACCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
3UTR CAA 72 bp AGGCCAAGCCACAGCTCTCGGATCTCTTTTACAGATTaGATCTGCAACCATTCCAGGGTTTATATAGATGAT +
Preference number: 4 (lower is better)
Translates to: RPSHSSRISFTD*ICNHSRVYIDD
Trigger: ATCATCTATATAAACCCTGGAATGGTTGCAGATCAAATCTGTAAAAGAGATCCGAGAGCTGTGGCTTGGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR TCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTCTTCATTAAGTTTCTaGACAGCTCCACGATCCTCT +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARSSLSF*TAPRSS
Trigger: AGAGGATCGTGGAGCTGTTCAGAAACTTAATGAAGA...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGAGGAATCGGCTATATTaGTGGTCAATTTCACCCAAG +
Preference number: 4 (lower is better)
Translates to: FKEEPLGLVLASMWILARRNRLY*WSISPK
Trigger: CTTGGGTGAAATTGACCAGCAATATAGCCGATTCCT...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR GCA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTATCAGTCAGTGTCTTCTaGACGTACTCCATTGCTGAC +
Preference number: 4 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLSVSVF*TYSIAD
Trigger: GTCAGCAATGGAGTACGTGCAGAAGACACTGACTGA...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CCA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTAAACTGCATCAATGAATaGTGTCACACAGATGAACTT +
Preference number: 4 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLNCINE*CHTDEL
Trigger: AAGTTCATCTGTGTGACACCATTCATTGATGCAGTT...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS CCA 90 bp TCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTGCTaGGCTGCCGTGGCTGCCGTCTGGAGGAGGCGAGACTCTTCCCAC +
Preference number: 5 (lower is better)
Translates to: SVTTAAVGWLAWPPC*AAVAAVWRRRDSSH
Trigger: GTGGGAAGAGTCTCGCCTCCTCCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS GCA 90 bp TTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTaGTGGGCTGCCGTGGCTGCCGTCTGGAGGAGGCGAGACTCTTCC +
Preference number: 5 (lower is better)
Translates to: FSVTTAAVGWLAWPP*WAAVAAVWRRRDSS
Trigger: GGAAGAGTCTCGCCTCCTCCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp ACCCAGGCACACAGACTTCCCAGAGCCCCTGAGGTACAACACCAGCCCCAGAGAGCGGCTGTTGGGTGGTaGGCCTGGCCCCCTTGCTGG +
Preference number: 5 (lower is better)
Translates to: TQAHRLPRAPEVQHQPQRAAVGW*AWPPCW
Trigger: CCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGC...TCTCTGGGGCTGGTGTTGTACCTCAGGGGCTCTGGGAAGTCTGTGTGCCTGGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGCCATCACTACGGCGGCTGTaGGGTGGTTGGCCTGGCCCC +
Preference number: 5 (lower is better)
Translates to: LTWETQWGADSCQSQGRPSLRRL*GGWPGP
Trigger: GGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGA...TGGCCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 90 bp ATCTGCTGCTTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTaGCCCCCTTGCTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTGC +
Preference number: 5 (lower is better)
Translates to: ICCFSVTTAAVGWLA*PPCWAAVAAVCRNC
Trigger: GCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAAGCAGCAGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS GCA 90 bp GTCAGCTGCTCGATGCTCAGCCCCCGCTTGGTGGTGGACGAGAACTaGCAGCTGAGCACCTCGGCCACTTGGTCCCAGGTTCCAATTGGC +
Preference number: 5 (lower is better)
Translates to: VSCSMLSPRLVVDEN*QLSTSATWSQVPIG
Trigger: GCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGAGCATCGAGCAGCTGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCTCACTACGGCGGCTGTaGGGTGGTTGGCCTGGCCCC +
Preference number: 5 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLSLRRL*GGWPGP
Trigger: GGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGA...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCGAGCACCTCGGCCACTaGGTCCCAGGTTCCAATTGG +
Preference number: 5 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALEHLGH*VPGSNW
Trigger: CCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTC...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCGCCCGCTCCCGCTCCTaGCTGATGAAACCCATGATG +
Preference number: 5 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALARSRS*LMKPMM
Trigger: CATCATGGGTTTCATCAGCAAGGAGCGGGAGCGGGC...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCAGGTGCCCGGGGGCTTaGTGCTTAGGATGGCCCGCT +
Preference number: 5 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFRCPGA*CLGWPA
Trigger: AGCGGGCCATCCTAAGCACAAAGCCCCCGGGCACCT...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 90 bp TCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTGCTaGGCTGCCGTGGCTGCCGTCTGCAGAAACTGCTTGATTCTTCGA +
Preference number: 5 (lower is better)
Translates to: SVTTAAVGWLAWPPC*AAVAAVCRNCLILR
Trigger: TCGAAGAATCAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp TCTGGCCCTGCCTCAGTCGTGCTAAGAACACTGATCCCTGCTTCCATCTCTGCAGCGGCTGTTGGGTGGTaGGCCTGGCCCCCTTGCTGG +
Preference number: 5 (lower is better)
Translates to: SGPASVVLRTLIPASISAAAVGW*AWPPCW
Trigger: CCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGC...TGCAGAGATGGAAGCAGGGATCAGTGTTCTTAGCACGACTGAGGCAGGGCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS-3UTR CAA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATGCTTCTCAGCCAGCGTaGTCAGCTGCTCGATGCTCA +
Preference number: 5 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHASQPA*SAARCS
Trigger: TGAGCATCGAGCAGCTGACAACGCTGGCTGAGAAGC...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS GCA 90 bp CGGTCCAGGCAGATGTTGGGAGGGCCTCCGATGCACGCGATCTGCTaGCGCCTCTTCCAGTCAGCCAGCTCTTCATCAGTCAGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: RSRQMLGGPPMHAIC*RLFQSASSSSVSVF
Trigger: GAAGACACTGACTGATGAAGAGCTGGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 90 bp AGACGGTCCAGGCAGATGTTGGGAGGGCCTCCGATGCACGCGATCTaGTGCCGCCTCTTCCAGTCAGCCAGCTCTTCATCAGTCAGTGTC +
Preference number: 5 (lower is better)
Translates to: RRSRQMLGGPPMHAI*CRLFQSASSSSVSV
Trigger: GACACTGACTGATGAAGAGCTGGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 90 bp TTGGTCTTCAGGTACGGGGCAGCACTACCTGGGTCGGCTTCGGGGTaGTCCTGGCTCTCGGGCCTACAGTACTTTCCAAATGCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LVFRYGAALPGSASG*SWLSGLQYFPNASS
Trigger: GGAGGAGGCATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCCAGGTAGTGCTGCCCCGTACCTGAAGACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 90 bp TTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTaGTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTGCTTGATTCTT +
Preference number: 5 (lower is better)
Translates to: FSVTTAAVGWLAWPP*WAAVAAVCRNCLIL
Trigger: AAGAATCAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS CCA 90 bp TTCAGGTACGGGGCAGCACTACCTGGGTCGGCTTCGGGGTGCTCCTaGCTCTCGGGCCTACAGTACTTTCCAAATGCCTCCTCCTTGGGA +
Preference number: 5 (lower is better)
Translates to: FRYGAALPGSASGCS*LSGLQYFPNASSLG
Trigger: TCCCAAGGAGGAGGCATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCCAGGTAGTGCTGCCCCGTACCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp GGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGGTCTCTAGGTCAATCTaGAGGCCTTGGTGGTACACC +
Preference number: 5 (lower is better)
Translates to: GGQAGRTGGVPLAPFCSQVSRSI*RPWWYT
Trigger: GGTGTACCACCAAGGCCTCAAGATTGACCTAGAGAC...CTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS GCA 90 bp TCCAGTTTTCCAGACGGTCCAGGCAGATGTTGGGAGGGCCTCCGATaGACGCGATCTGCTGCCGCCTCTTCCAGTCAGCCAGCTCTTCAT +
Preference number: 5 (lower is better)
Translates to: SSFPDGPGRCWEGLR*TRSAAASSSQPALH
Trigger: ATGAAGAGCTGGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCGTCTGGAAAACTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGTGGCATGTGACTCTTaGCTGGCTGCATATGCCCAG +
Preference number: 5 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSVACDS*LAAYAQ
Trigger: CTGGGCATATGCAGCCAGCAAAGAGTCACATGCCAC...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCAGCGGCTGTTGGGTGGTaGGCCTGGCCCCCTTGCTGG +
Preference number: 5 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGAAAVGW*AWPPCW
Trigger: CCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGC...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCGTCTCTAGGTCAATCTaGAGGCCTTGGTGGTACACC +
Preference number: 5 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALVSRSI*RPWWYT
Trigger: GGTGTACCACCAAGGCCTCAAGATTGACCTAGAGAC...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAGCCCGCTCCCGCTCCTaGCTGATGAAACCCATGATG +
Preference number: 5 (lower is better)
Translates to: WGGRAVTVSKQKAGVVKAARSRS*LMKPMM
Trigger: CATCATGGGTTTCATCAGCAAGGAGCGGGAGCGGGC...TGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCACCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCAGGAGACACCAGGATGTaGGTCGCATCCATGATCTTA +
Preference number: 5 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPGDTRM*VASMIL
Trigger: TAAGATCATGGATGCGACCAACATCCTGGTGTCTCC...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATGTCACACAGATGAACTaGGTCTTCAGGTACGGGGCA +
Preference number: 5 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHVTQMN*VFRYGA
Trigger: TGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGAC...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTATCACTACGGCGGCTGTaGGGTGGTTGGCCTGGCCCC +
Preference number: 5 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLSLRRL*GGWPGP
Trigger: GGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGA...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGAAGGAGGCATCACAATaGGCACGGCCTCCATTCCCA +
Preference number: 5 (lower is better)
Translates to: VPPHLGDPMGSRQLPVSGKEASQ*ARPPFP
Trigger: TGGGAATGGAGGCCGTGCCAATTGTGATGCCTCCTT...CCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGTCAATCTTGAGGCCTaGGTGGTACACCTCAGTCTC +
Preference number: 5 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSVNLEA*VVHLSL
Trigger: GAGACTGAGGTGTACCACCAAGGCCTCAAGATTGAC...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATCAGAAGGAGAAGCCCTaGCCAGCCATGTTTTCTTTG +
Preference number: 5 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHQKEKP*PAMFSL
Trigger: CAAAGAAAACATGGCTGGCAAGGGCTTCTCCTTCTG...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTAGGCCCAGTAAGGTGCCCGGGGGCTTaGTGCTTAGGATGGCCCGCT +
Preference number: 5 (lower is better)
Translates to: YYQQGQVGKEGRLTLGPVRCPGA*CLGWPA
Trigger: AGCGGGCCATCCTAAGCACAAAGCCCCCGGGCACCT...TACTGGGCCTAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGAGGGCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCTTGTTCAGCTGCTGCTaGGTGTATGGCTCTACAGAC +
Preference number: 5 (lower is better)
Translates to: KEGRRAGQEVFPLLPSALLFSCC*VYGSTD
Trigger: GTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAA...GAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGCCCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAGGCAGGTCAATGGTATaGCTGCAGGTCGTTGGTGTC +
Preference number: 5 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAGRSMV*LQVVGV
Trigger: GACACCAACGACCTGCAGCAATACCATTGACCTGCC...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
CDS GCA 90 bp GGCTTCGGGGTGCTCCTGGCTCTCGGGCCTACAGTACTTTCCAAATaGCTCCTCCTTGGGAATGTCGGGGTAGAGGTAGACAAGTGGAGA +
Preference number: 5 (lower is better)
Translates to: GFGVLLALGPTVLSK*LLLGNVGVEVDKWR
Trigger: TCTCCACTTGTCTACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCACCCCGAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 90 bp CGCTTGGTGGTGGACGAGAACTGCCAGCTGAGCACCTCGGCCACTTaGTCCCAGGTTCCAATTGGCGGCTTAGTGAAGAAGTTCACGTTC +
Preference number: 5 (lower is better)
Translates to: RLVVDENCQLSTSAT*SQVPIGGLVKKFTF
Trigger: GAACGTGAACTTCTTCACTAAGCCGCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCACCAAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp CACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGAGGTCCGGGCAATTTCCATaGGCTTCTCAAGATACCTGC +
Preference number: 5 (lower is better)
Translates to: HLTWETQWGADSCQSQGRSGQFP*ASQDTC
Trigger: GCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGGA...CCTCCCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTCTGCACGTACTCCATaGCTGACAAGAGCCCCGCCA +
Preference number: 5 (lower is better)
Translates to: WESSNCLEAEGWGGQGKQSARTP*LTRAPP
Trigger: TGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGA...CTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GCAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCACTCCAGTTTCTTAATTaGTTGGCGGGTCTGAAGTTG +
Preference number: 5 (lower is better)
Translates to: AGGQDRRCSPCSLLLSAPLQFLN*LAGLKL
Trigger: CAACTTCAGACCCGCCAACAAATTAAGAAACTGGAG...TGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTGCCAGTCTCAGGGGTCAATCTTGAGGCCTaGGTGGTACACCTCAGTCTC +
Preference number: 5 (lower is better)
Translates to: VPPHLGDPMGSRQLPVSGVNLEA*VVHLSL
Trigger: GAGACTGAGGTGTACCACCAAGGCCTCAAGATTGAC...CCCTGAGACTGGCAACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATACAAGGTCGATGATATaGTCTAGCCAGACCCAGAAG +
Preference number: 5 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHTRSMI*SSQTQK
Trigger: CTTCTGGGTCTGGCTAGACAATATCATCGACCTTGT...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGGCCCGCTCCCGCTCCTaGCTGATGAAACCCATGATG +
Preference number: 5 (lower is better)
Translates to: VTVSKQKAGVVKASSSSWARSRS*LMKPMM
Trigger: CATCATGGGTTTCATCAGCAAGGAGCGGGAGCGGGC...CCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAAGGCAGGTTGACCCTAAGGTGCCCGGGGGCTTaGTGCTTAGGATGGCCCGCT +
Preference number: 5 (lower is better)
Translates to: KGTYYQQGQVGKEGRLTLRCPGA*CLGWPA
Trigger: AGCGGGCCATCCTAAGCACAAAGCCCCCGGGCACCT...TAGGGTCAACCTGCCTTCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATTCAGCAAATGACATGTaGTTCAGCTGCTGCTTGGTG +
Preference number: 5 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHSANDM*FSCCLV
Trigger: CACCAAGCAGCAGCTGAACAACATGTCATTTGCTGA...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGGAGACACCAGGATGTaGGTCGCATCCATGATCTTA +
Preference number: 5 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSGDTRM*VASMIL
Trigger: TAAGATCATGGATGCGACCAACATCCTGGTGTCTCC...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TGGGGTGGGAGAGCAGTAACTGTCTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAGGCAGGTCAATGGTATaGCTGCAGGTCGTTGGTGTC +
Preference number: 5 (lower is better)
Translates to: WGGRAVTVSKQKAGVVKAGRSMV*LQVVGV
Trigger: GACACCAACGACCTGCAGCAATACCATTGACCTGCC...TGCCTTGACCACCCCAGCCTTCTGCTTCGAGACAGTTACTGCTCTCCCACCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127638.8
CDS TCA 90 bp GGCCCCCTTGCTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTGCTTaGTTCTTCGAAGGTTGTGCTGATAGAGGACATTGGACTCTTGCA +
Preference number: 5 (lower is better)
Translates to: GPLAGLPWLPSAETA*FFEGCADRGHWTLA
Trigger: TGCAAGAGTCCAATGTCCTCTATCAGCACAACCTTCGAAGAATCAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS GCA 90 bp CTCTTTGCTGGCTGCATATGCCCAGTCTTGACTCTCAATCCAAGGTaGCAGGAACTGCCGCAGCTCCATGGGGAAGCTGTCGCTGTACAG +
Preference number: 5 (lower is better)
Translates to: LFAGCICPVLTLNPR*QELPQLHGEAVAVQ
Trigger: CTGTACAGCGACAGCTTCCCCATGGAGCTGCGGCAGTTCCTGGCACCTTGGATTGAGAGTCAAGACTGGGCATATGCAGCCAGCAAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 90 bp TGCCGCCTCTTCCAGTCAGCCAGCTCTTCATCAGTCAGTGTCTTCTaGACGTACTCCATTGCTGACAAGAGCCCCGCCAGCTCACTCACA +
Preference number: 5 (lower is better)
Translates to: CRLFQSASSSSVSVF*TYSIADKSPASSLT
Trigger: TGTGAGTGAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGAAGACACTGACTGATGAAGAGCTGGCTGACTGGAAGAGGCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 90 bp CTGCTAATGAAGTTATCCAGTTTTCCAGACGGTCCAGGCAGATGTTaGGAGGGCCTCCGATGCACGCGATCTGCTGCCGCCTCTTCCAGT +
Preference number: 5 (lower is better)
Translates to: LLMKLSSFPDGPGRC*EGLRCTRSAAASSS
Trigger: ACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCGTCTGGAAAACTGGATAACTTCATTAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGCATATGCCCAGTCTaGACTCTCAATCCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFCICPV*TLNPRC
Trigger: GCACCTTGGATTGAGAGTCAAGACTGGGCATATGCA...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCCTGGTCACAGACTGGTaGTTTCCATTCAGATCCTGC +
Preference number: 5 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFLVTDW*FPFRSC
Trigger: GCAGGATCTGAATGGAAACAACCAGTCTGTGACCAG...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGGCGGGCAGGACAGGAGGTGTTCCCCTTGCTCCCTTCTGCTCTCAGCCCCATACGTTCTTGGGGTTATaGGTCAGCATGTTATACCAC +
Preference number: 5 (lower is better)
Translates to: QAGRTGGVPLAPFCSQPHTFLGL*VSMLYH
Trigger: GTGGTATAACATGCTGACCAATAACCCCAAGAACGT...ATGGGGCTGAGAGCAGAAGGGAGCAAGGGGAACACCTCCTGTCCTGCCCGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp ACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAGGGCAGACGTGACCCCTCCTTCTTaGCTGCTCTCGCTGAAGCGC +
Preference number: 5 (lower is better)
Translates to: TVASLRGGQEYTTHMRADVTPPS*LLSLKR
Trigger: GCGCTTCAGCGAGAGCAGCAAAGAAGGAGGGGTCAC...GTCTGCCCTCATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAAGGAGTGACCCCTCCTTCTTaGCTGCTCTCGCTGAAGCGC +
Preference number: 5 (lower is better)
Translates to: GLWTWEGDILPARSSGKGVTPPS*LLSLKR
Trigger: GCGCTTCAGCGAGAGCAGCAAAGAAGGAGGGGTCAC...TCCTTTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGGTTCGGCTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTTCAGCAAATGACATGTaGTTCAGCTGCTGCTTGGTG +
Preference number: 5 (lower is better)
Translates to: GFGCLGVEHGAGVSSHVSSANDM*FSCCLV
Trigger: CACCAAGCAGCAGCTGAACAACATGTCATTTGCTGA...AGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAGCCGAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 90 bp GCTCCTGGCTCTCGGGCCTACAGTACTTTCCAAATGCCTCCTCCTTaGGAATGTCGGGGTAGAGGTAGACAAGTGGAGACACCAGGATGT +
Preference number: 5 (lower is better)
Translates to: APGSRAYSTFQMPPP*ECRGRGRQVETPGC
Trigger: ACATCCTGGTGTCTCCACTTGTCTACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAATCCTGCATGTCTCCTaGGCTCTTGAGGGTTTTGTA +
Preference number: 5 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWAILHVS*ALEGFV
Trigger: TACAAAACCCTCAAGAGCCAAGGAGACATGCAGGAT...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGTGCAGGAACTGTGTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTCTGGTCACAGACTGGTaGTTTCCATTCAGATCCTGC +
Preference number: 5 (lower is better)
Translates to: GAGTVFHLTWETQWGADSLVTDW*FPFRSC
Trigger: GCAGGATCTGAATGGAAACAACCAGTCTGTGACCAG...ACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAACACAGTTCCTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTTCTGCACGTACTCCATaGCTGACAAGAGCCCCGCCA +
Preference number: 5 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPSARTP*LTRAPP
Trigger: TGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGA...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCGAGCACCTCGGCCACTaGGTCCCAGGTTCCAATTGG +
Preference number: 5 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPEHLGH*VPGSNW
Trigger: CCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTC...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCCAGAAGGAGAAGCCCTaGCCAGCCATGTTTTCTTTG +
Preference number: 5 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLQKEKP*PAMFSL
Trigger: CAAAGAAAACATGGCTGGCAAGGGCTTCTCCTTCTG...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGTGACCCCTCCTTCTTaGCTGCTCTCGCTGAAGCGC +
Preference number: 5 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVVTPPS*LLSLKR
Trigger: GCGCTTCAGCGAGAGCAGCAAAGAAGGAGGGGTCAC...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGTGCAGGAACTGTGTTCCACCTCACCTGGGAGACCCAATGGGGAGCAGACAGTTTGTTCAGCTGCTGCTaGGTGTATGGCTCTACAGAC +
Preference number: 5 (lower is better)
Translates to: GAGTVFHLTWETQWGADSLFSCC*VYGSTD
Trigger: GTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAA...ACTGTCTGCTCCCCATTGGGTCTCCCAGGTGAGGTGGAACACAGTTCCTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CTGCTTAGGGGTGGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTCAGCAAATGACATGTaGTTCAGCTGCTGCTTGGTG +
Preference number: 5 (lower is better)
Translates to: LLRGGARGRCLKSRLCSFSANDM*FSCCLV
Trigger: CACCAAGCAGCAGCTGAACAACATGTCATTTGCTGA...GAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCCACCCCTAAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS TCA 90 bp AGCCAGCTCTTCATCAGTCAGTGTCTTCTGCACGTACTCCATTGCTaGCAAGAGCCCCGCCAGCTCACTCACAATGCTTCTCCGCATCTG +
Preference number: 5 (lower is better)
Translates to: SQLFISQCLLHVLHC*QEPRQLTHNASPHL
Trigger: CAGATGCGGAGAAGCATTGTGAGTGAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGAAGACACTGACTGATGAAGAGCTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 90 bp ATCTTGAGGCCTTGGTGGTACACCTCAGTCTCGAAGGTGATCAGGTaGAGCTCCTCAGTCACGATCAAGGAGGCATCACAATTGGCACGG +
Preference number: 5 (lower is better)
Translates to: ILRPWWYTSVSKVIR*SSSVTIKEASQLAR
Trigger: CCGTGCCAATTGTGATGCCTCCTTGATCGTGACTGAGGAGCTGCACCTGATCACCTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 90 bp ACAACTGGCAAGGAGTGGGTCTCTAGGTCAATCTTGAGGCCTTGGTaGTACACCTCAGTCTCGAAGGTGATCAGGTGCAGCTCCTCAGTC +
Preference number: 5 (lower is better)
Translates to: TTGKEWVSRSILRPW*YTSVSKVIRCSSSV
Trigger: GACTGAGGAGCTGCACCTGATCACCTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGATTGACCTAGAGACCCACTCCTTGCCAGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 90 bp GAACTGCCAGCTGAGCACCTCGGCCACTTGGTCCCAGGTTCCAATTaGCGGCTTAGTGAAGAAGTTCACGTTCTTGGGGTTATTGGTCAG +
Preference number: 5 (lower is better)
Translates to: ELPAEHLGHLVPGSN*RLSEEVHVLGVIGQ
Trigger: CTGACCAATAACCCCAAGAACGTGAACTTCTTCACTAAGCCGCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCATCCTGCATGTCTCCTaGGCTCTTGAGGGTTTTGTA +
Preference number: 5 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLILHVS*ALEGFV
Trigger: TACAAAACCCTCAAGAGCCAAGGAGACATGCAGGAT...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCTCTGCACGTACTCCATaGCTGACAAGAGCCCCGCCA +
Preference number: 5 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPSARTP*LTRAPP
Trigger: TGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGA...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GTTCCCAGCCTGGGGTATCAGCTCACAGAGTGGGGCAACAGGATGCCATGGGCAACGTTCTTGGGGTTATaGGTCAGCATGTTATACCAC +
Preference number: 5 (lower is better)
Translates to: VPSLGYQLTEWGNRMPWATFLGL*VSMLYH
Trigger: GTGGTATAACATGCTGACCAATAACCCCAAGAACGT...TGCCCATGGCATCCTGTTGCCCCACTCTGTGAGCTGATACCCCAGGCTGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCAGCTTCTCAGCCAGCGTaGTCAGCTGCTCGATGCTCA +
Preference number: 5 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGAASQPA*SAARCS
Trigger: TGAGCATCGAGCAGCTGACAACGCTGGCTGAGAAGC...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGAGCACGGGGCAGGTGTCTCAAGTCACGTCTCTGCAGCTTCTGGTTTCAGCTCACAAGGTCGATGATATaGTCTAGCCAGACCCAGAAG +
Preference number: 5 (lower is better)
Translates to: GARGRCLKSRLCSFWFQLTRSMI*SSQTQK
Trigger: CTTCTGGGTCTGGCTAGACAATATCATCGACCTTGT...GAGCTGAAACCAGAAGCTGCAGAGACGTGACTTGAGACACCTGCCCCGTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGACTGGTCACAGACTGGTaGTTTCCATTCAGATCCTGC +
Preference number: 5 (lower is better)
Translates to: QRAFGHGKGTYYQQGQVGLVTDW*FPFRSC
Trigger: GCAGGATCTGAATGGAAACAACCAGTCTGTGACCAG...TCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCAAAGGAGGCATCACAATaGGCACGGCCTCCATTCCCA +
Preference number: 5 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGAKEASQ*ARPPFP
Trigger: TGGGAATGGAGGCCGTGCCAATTGTGATGCCTCCTT...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATGTCTCTAGGTCAATCTaGAGGCCTTGGTGGTACACC +
Preference number: 5 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHVSRSI*RPWWYT
Trigger: GGTGTACCACCAAGGCCTCAAGATTGACCTAGAGAC...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCAGAGCACCTCGGCCACTaGGTCCCAGGTTCCAATTGG +
Preference number: 5 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSEHLGH*VPGSNW
Trigger: CCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTC...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CTCGAAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTTGTTCAGCTGCTGCTaGGTGTATGGCTCTACAGAC +
Preference number: 5 (lower is better)
Translates to: LEAEGWGGQGKQFVLETMLFSCC*VYGSTD
Trigger: GTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAA...CATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTTCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGAAGTCACACAGATGAACTaGGTCTTCAGGTACGGGGCA +
Preference number: 5 (lower is better)
Translates to: RGPLDMGRGHTTSKVKWEVTQMN*VFRYGA
Trigger: TGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGAC...TTCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 90 bp AGACTCTTCCCACAGGCATCGGGCCACGATCCGGGCAATTTCCATTaGCTTCTCAAGATACCTGCTCTGCAGAAACTGCTTGATTCTTCG +
Preference number: 5 (lower is better)
Translates to: RLFPQASGHDPGNFH*LLKIPALQKLLDSS
Trigger: CGAAGAATCAAGCAGTTTCTGCAGAGCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGGATCGTGGCCCGATGCCTGTGGGAAGAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCAGCTTCTCAGCCAGCGTaGTCAGCTGCTCGATGCTCA +
Preference number: 5 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSASQPA*SAARCS
Trigger: TGAGCATCGAGCAGCTGACAACGCTGGCTGAGAAGC...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 90 bp TCCAAATGCCTCCTCCTTGGGAATGTCGGGGTAGAGGTAGACAAGTaGAGACACCAGGATGTTGGTCGCATCCATGATCTTATAGCCCAT +
Preference number: 5 (lower is better)
Translates to: SKCLLLGNVGVEVDK*RHQDVGRIHDLIAH
Trigger: ATGGGCTATAAGATCATGGATGCGACCAACATCCTGGTGTCTCCACTTGTCTACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp GCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCTGCATATGCCCAGTCTaGACTCTCAATCCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: APSPDSEVLSSLHNSLSPCICPV*TLNPRC
Trigger: GCACCTTGGATTGAGAGTCAAGACTGGGCATATGCA...GGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp GGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGTCCGGGCAATTTCCATaGGCTTCTCAAGATACCTGC +
Preference number: 5 (lower is better)
Translates to: GTTKLGVSDDMGFGCLGVSGQFP*ASQDTC
Trigger: GCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGGA...CACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTCAAGTGGGACTCCAGTTTCTTAATTaGTTGGCGGGTCTGAAGTTG +
Preference number: 5 (lower is better)
Translates to: QRAFGHGKGTYYQQGQVGLQFLN*LAGLKL
Trigger: CAACTTCAGACCCGCCAACAAATTAAGAAACTGGAG...TCCCACTTGACCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGCAGAAGGCTGGGGTGGTCAAGGCAAGCAGTTCGTCTTGGAGACAATGTCCTACAAGGTCGATGATATaGTCTAGCCAGACCCAGAAG +
Preference number: 5 (lower is better)
Translates to: KQKAGVVKASSSSWRQCPTRSMI*SSQTQK
Trigger: CTTCTGGGTCTGGCTAGACAATATCATCGACCTTGT...AGGACATTGTCTCCAAGACGAACTGCTTGCCTTGACCACCCCAGCCTTCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCATCCGGGCAATTTCCATaGGCTTCTCAAGATACCTGC +
Preference number: 5 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPSGQFP*ASQDTC
Trigger: GCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGGA...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCAATCCTGCATGTCTCCTaGGCTCTTGAGGGTTTTGTA +
Preference number: 5 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGAILHVS*ALEGFV
Trigger: TACAAAACCCTCAAGAGCCAAGGAGACATGCAGGAT...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AGAAGCAGGACAGAGGGCCTTTGGACATGGGAAGGGGACATACTACCAGCAAGGTTCAACTCAGGAAATTaGACCAGCAACCTGACTTTC +
Preference number: 5 (lower is better)
Translates to: RSRTEGLWTWEGDILPARFNSGN*TSNLTF
Trigger: GAAAGTCAGGTTGCTGGTCAAATTTCCTGAGTTGAA...CCTTGCTGGTAGTATGTCCCCTTCCCATGTCCAAAGGCCCTCTGTCCTGCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCAGTCACACAGATGAACTaGGTCTTCAGGTACGGGGCA +
Preference number: 5 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSVTQMN*VFRYGA
Trigger: TGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGAC...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TCAGCCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCATGCATATGCCCAGTCTaGACTCTCAATCCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: SAPSPDSEVLSSLHNSLSCICPV*TLNPRC
Trigger: GCACCTTGGATTGAGAGTCAAGACTGGGCATATGCA...TGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp ACAGTTGCCAGTCTCAGGGGAGGCCAAGAATACACCACTCATATGAGGGCAGACCAGTTTCTTAATTTGTaGGCGGGTCTGAAGTTGAGA +
Preference number: 5 (lower is better)
Translates to: TVASLRGGQEYTTHMRADQFLNL*AGLKLR
Trigger: TCTCAACTTCAGACCCGCCAACAAATTAAGAAACTG...GTCTGCCCTCATATGAGTGGTGTATTCTTGGCCTCCCCTGAGACTGGCAACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCACTCCAGTTTCTTAATTaGTTGGCGGGTCTGAAGTTG +
Preference number: 5 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGALQFLN*LAGLKL
Trigger: CAACTTCAGACCCGCCAACAAATTAAGAAACTGGAG...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp AAGGTCCTGAGGCAGGGATTCCCAATAGAAGCAGGACAGAGGGCCTTTGGACATTTCAACTCAGGAAATTaGACCAGCAACCTGACTTTC +
Preference number: 5 (lower is better)
Translates to: KVLRQGFPIEAGQRAFGHFNSGN*TSNLTF
Trigger: GAAAGTCAGGTTGCTGGTCAAATTTCCTGAGTTGAA...ATGTCCAAAGGCCCTCTGTCCTGCTTCTATTGGGAATCCCTGCCTCAGGACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGTTGAAAGTGCAGGTCAATCTTGAGGCCTaGGTGGTACACCTCAGTCTC +
Preference number: 5 (lower is better)
Translates to: PLGLVLASMWILARLKVQVNLEA*VVHLSL
Trigger: GAGACTGAGGTGTACCACCAAGGCCTCAAGATTGAC...CTGCACTTTCAACCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp CACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGGGTGGAGCAACGTTCTTGGGGTTATaGGTCAGCATGTTATACCAC +
Preference number: 5 (lower is better)
Translates to: HKVRSFRRYGVRLLRGGATFLGL*VSMLYH
Trigger: GTGGTATAACATGCTGACCAATAACCCCAAGAACGT...TGCTCCACCCCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp TTTAAAGAGGAACCTCTGGGCTTAGTCCTAGCTTCTATGTGGATATTAGCAAGGAAGGAGGCATCACAATaGGCACGGCCTCCATTCCCA +
Preference number: 5 (lower is better)
Translates to: FKEEPLGLVLASMWILARKEASQ*ARPPFP
Trigger: TGGGAATGGAGGCCGTGCCAATTGTGATGCCTCCTT...CCTTGCTAATATCCACATAGAAGCTAGGACTAAGCCCAGAGGTTCCTCTTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS TCA 90 bp CTGGTCAATTTCACCCAAGAGATTATGAAACACCAACGTGGCATGTaGCTCTTTGCTGGCTGCATATGCCCAGTCTTGACTCTCAATCCA +
Preference number: 5 (lower is better)
Translates to: LVNFTQEIMKHQRGM*LFAGCICPVLTLNP
Trigger: TGGATTGAGAGTCAAGACTGGGCATATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATAATCTCTTGGGTGAAATTGACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp CCCCATCCCCAGACTCAGAGGTGCTCTCCTCTTTACATAACAGTTTATCACCCACAGTTTCTTAATTTGTaGGCGGGTCTGAAGTTGAGA +
Preference number: 5 (lower is better)
Translates to: PHPQTQRCSPLYITVYHPQFLNL*AGLKLR
Trigger: TCTCAACTTCAGACCCGCCAACAAATTAAGAAACTG...TGGGTGATAAACTGTTATGTAAAGAGGAGAGCACCTCTGAGTCTGGGGATGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS TCA 90 bp GTTGGTCGCATCCATGATCTTATAGCCCATGATGATTTCAGCAAATaGCATGTTGTTCAGCTGCTGCTTGGTGTATGGCTCTACAGACTG +
Preference number: 5 (lower is better)
Translates to: VGRIHDLIAHDDFSK*HVVQLLLGVWLYRL
Trigger: CAGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAACATGTCATTTGCTGAAATCATCATGGGCTATAAGATCATGGATGCGACCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTAGTGGCATGTGACTCTTaGCTGGCTGCATATGCCCAG +
Preference number: 5 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLVACDS*LAAYAQ
Trigger: CTGGGCATATGCAGCCAGCAAAGAGTCACATGCCAC...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp ATCTGGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGCAGTTTCTTAATTTGTaGGCGGGTCTGAAGTTGAGA +
Preference number: 5 (lower is better)
Translates to: IWNHKVRSFRRYGVRLLRQFLNL*AGLKLR
Trigger: TCTCAACTTCAGACCCGCCAACAAATTAAGAAACTG...CCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS-3UTR CAA 90 bp ATCTGGAACCACAAAGTTAGGAGTTTCAGACGATATGGGGTTCGGCTGCTTAGGTTCAACTCAGGAAATTaGACCAGCAACCTGACTTTC +
Preference number: 5 (lower is better)
Translates to: IWNHKVRSFRRYGVRLLRFNSGN*TSNLTF
Trigger: GAAAGTCAGGTTGCTGGTCAAATTTCCTGAGTTGAA...CCTAAGCAGCCGAACCCCATATCGTCTGAAACTCCTAACTTTGTGGTTCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 90 bp TATATTGCTGGTCAATTTCACCCAAGAGATTATGAAACACCAACGTaGCATGTGACTCTTTGCTGGCTGCATATGCCCAGTCTTGACTCT +
Preference number: 5 (lower is better)
Translates to: YIAGQFHPRDYETPT*HVTLCWLHMPSLDS
Trigger: AGAGTCAAGACTGGGCATATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATAATCTCTTGGGTGAAATTGACCAGCAATATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS-3UTR CAA 90 bp TTGAAAGCCATAAAAATGCCCAAGCCTTGCCTTCCTAAATACCCTTTCAGTTTACAGAAGGAGAAGCCCTaGCCAGCCATGTTTTCTTTG +
Preference number: 5 (lower is better)
Translates to: LKAIKMPKPCLPKYPFSLQKEKP*PAMFSL
Trigger: CAAAGAAAACATGGCTGGCAAGGGCTTCTCCTTCTG...TAAACTGAAAGGGTATTTAGGAAGGCAAGGCTTGGGCATTTTTATGGCTTTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 72 bp ACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTGCTaGGCTGCCGTGGCTGCCGTCTGGAGGAGGCGAGAC +
Preference number: 6 (lower is better)
Translates to: TAAVGWLAWPPC*AAVAAVWRRRD
Trigger: GTCTCGCCTCCTCCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CAA 72 bp CACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTaGCTGGGCTGCCGTGGCTGCCGTCTGGAGGAGGCG +
Preference number: 6 (lower is better)
Translates to: HYGGCWVVGLAP*LGCRGCRLEEA
Trigger: CGCCTCCTCCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS GCA 72 bp ACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTaGTGGGCTGCCGTGGCTGCCGTCTGGAGGAGGCGA +
Preference number: 6 (lower is better)
Translates to: TTAAVGWLAWPP*WAAVAAVWRRR
Trigger: TCGCCTCCTCCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS GCA 72 bp ACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTaGTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTGC +
Preference number: 6 (lower is better)
Translates to: TTAAVGWLAWPP*WAAVAAVCRNC
Trigger: GCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS CCA 72 bp TTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTaGCCCCCTTGCTGGGCTGCCGTGGCTGCCGTCTGG +
Preference number: 6 (lower is better)
Translates to: FSVTTAAVGWLA*PPCWAAVAAVW
Trigger: CCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 72 bp ACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTTGCTaGGCTGCCGTGGCTGCCGTCTGCAGAAACTGCTTG +
Preference number: 6 (lower is better)
Translates to: TAAVGWLAWPPC*AAVAAVCRNCL
Trigger: CAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS CCA 72 bp TTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTaGCCCCCTTGCTGGGCTGCCGTGGCTGCCGTCTGC +
Preference number: 6 (lower is better)
Translates to: FSVTTAAVGWLA*PPCWAAVAAVC
Trigger: GCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS CAA 72 bp CACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTaGCTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTG +
Preference number: 6 (lower is better)
Translates to: HYGGCWVVGLAP*LGCRGCRLQKL
Trigger: CAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS CAA 90 bp CTTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTaGCTGGGCTGCCGTGGCTGCCGTCTGGAGGAGGCGAGACTCTTC +
Preference number: 6 (lower is better)
Translates to: LLCHYGGCWVVGLAP*LGCRGCRLEEARLF
Trigger: GAAGAGTCTCGCCTCCTCCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS GCA 72 bp CCAGGCCCTAGGAGCTTCTCAGCCAGCGTTGTCAGCTaGTCGATGCTCAGCCCCCGCTTGGTGGTGGACGAG +
Preference number: 6 (lower is better)
Translates to: PGPRSFSASVVS*SMLSPRLVVDE
Trigger: CTCGTCCACCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGCTGAGAAGCTCCTAGGGCCTGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp ATCTGCTGCTTCTCTGTCACTACGGCGGCTGTTGGGTaGTTGGCCTGGCCCCCTTGCTGGGCTGCCGTGGCT +
Preference number: 6 (lower is better)
Translates to: ICCFSVTTAAVG*LAWPPCWAAVA
Trigger: AGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAAGCAGCAGAT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GCCAGCGTTGTCAGCTGCTCGATGCTCAGCCCCCGCTaGGTGGTGGACGAGAACTGCCAGCTGAGCACCTCG +
Preference number: 6 (lower is better)
Translates to: ASVVSCSMLSPR*VVDENCQLSTS
Trigger: CGAGGTGCTCAGCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp CAACATCTGCTGCTTCTCTGTCACTACGGCGGCTGTTaGGTGGTTGGCCTGGCCCCCTTGCTGGGCTGCCGT +
Preference number: 6 (lower is better)
Translates to: QHLLLLCHYGGC*VVGLAPLLGCR
Trigger: ACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAAGCAGCAGATGTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp GGGGCAGCACTACCTGGGTCGGCTTCGGGGTGCTCCTaGCTCTCGGGCCTACAGTACTTTCCAAATGCCTCC +
Preference number: 6 (lower is better)
Translates to: GAALPGSASGCS*LSGLQYFPNAS
Trigger: GGAGGCATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCCAGGTAGTGCTGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp AGCTTCTCAGCCAGCGTTGTCAGCTGCTCGATGCTCAGCCCCCGCTaGGTGGTGGACGAGAACTGCCAGCTGAGCACCTCGGCCACTTGG +
Preference number: 6 (lower is better)
Translates to: SFSASVVSCSMLSPR*VVDENCQLSTSATW
Trigger: CCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGCTGAGAAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp CTTCTCTGTCACTACGGCGGCTGTTGGGTGGTTGGCCTGGCCCCCTaGCTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTGCTTGATTCT +
Preference number: 6 (lower is better)
Translates to: LLCHYGGCWVVGLAP*LGCRGCRLQKLLDS
Trigger: AGAATCAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCACCCAACAGCCGCCGTAGTGACAGAGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS TCA 72 bp TCAGCCCCCGCTTGGTGGTGGACGAGAACTGCCAGCTaGGCACCTCGGCCACTTGGTCCCAGGTTCCAATTG +
Preference number: 6 (lower is better)
Translates to: SAPAWWWTRTAS*APRPLGPRFQL
Trigger: CAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCACCAAGCGGGGGCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp ACCCTGAGTAGTTCACACCAGGCCCTAGGAGCTTCTCAGCCAGCGTaGTCAGCTGCTCGATGCTCAGCCCCCGCTTGGTGGTGGACGAGA +
Preference number: 6 (lower is better)
Translates to: TLSSSHQALGASQPA*SAARCSAPAWWWTR
Trigger: TCTCGTCCACCACCAAGCGGGGGCTGAGCATCGAGCAGCTGACAACGCTGGCTGAGAAGCTCCTAGGGCCTGGTGTGAACTACTCAGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 72 bp AGGCAGATGTTGGGAGGGCCTCCGATGCACGCGATCTaGTGCCGCCTCTTCCAGTCAGCCAGCTCTTCATCA +
Preference number: 6 (lower is better)
Translates to: RQMLGGPPMHAI*CRLFQSASSSS
Trigger: TGATGAAGAGCTGGCTGACTGGAAGAGGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 72 bp TTCAGGTACGGGGCAGCACCTGGGTCGGCTTCGGGGTaGTCCTGGCTCTCGGGCCTACAGTACTTTCCAAAT +
Preference number: 6 (lower is better)
Translates to: FRYGAAPGSASG*SWLSGLQYFPN
Trigger: ATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCCAGGTGCTGCCCCGTACCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092671.12
CDS GCA 72 bp AGGTACGGGGCAGCACTACCTGGGTCGGCTTCGGGGTaGTCCTGGCTCTCGGGCCTACAGTACTTTCCAAAT +
Preference number: 6 (lower is better)
Translates to: RYGAALPGSASG*SWLSGLQYFPN
Trigger: ATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCACCCCGAAGCCGACCCAGGTAGTGCTGCCCCGTACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 72 bp GTGGTTGGCCTGGCCCCCTTGCTGGGCTGCCGTGGCTaGCGTCTGCAGAAACTGCTTGATTCTTCGAAGGTT +
Preference number: 6 (lower is better)
Translates to: VVGLAPLLGCRG*RLQKLLDSSKV
Trigger: AACCTTCGAAGAATCAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGCAAGGGGGCCAGGCCAACCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS CCA 72 bp AAGTTATCCAGTTTTCCAGACGGTCCAGGCAGATGTTaGGAGGGCCTCCGATGCACGCGATCTGCTGCCGCC +
Preference number: 6 (lower is better)
Translates to: KLSSFPDGPGRC*EGLRCTRSAAA
Trigger: GGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCGTCTGGAAAACTGGATAACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GAAGTTATCCAGTTTTCCAGACGGTCCAGGCAGATGTaGGGAGGGCCTCCGATGCACGCGATCTGCTGCCGC +
Preference number: 6 (lower is better)
Translates to: EVIQFSRRSRQM*GGPPMHAICCR
Trigger: GCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCGTCTGGAAAACTGGATAACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp CCGCTTGGTGGTGGACGAGAACTGCCAGCTGAGCACCTCGGCCACTaGGTCCCAGGTTCCAATTGGCGGCTTAGTGAAGAAGTTCACGTT +
Preference number: 6 (lower is better)
Translates to: PLGGGRELPAEHLGH*VPGSNWRLSEEVHV
Trigger: AACGTGAACTTCTTCACTAAGCCGCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACCACCAAGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp AAGGTGCCCGGGGGCTTTGTGCTTAGGATGGCCCGCTCCCGCTCCTaGCTGATGAAACCCATGATGTACCCTTCATTCCAAAGGGCCAAG +
Preference number: 6 (lower is better)
Translates to: KVPGGFVLRMARSRS*LMKPMMYPSFQRAK
Trigger: CTTGGCCCTTTGGAATGAAGGGTACATCATGGGTTTCATCAGCAAGGAGCGGGAGCGGGCCATCCTAAGCACAAAGCCCCCGGGCACCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 72 bp GGCTGCATATGCCCAGTCTTGACTCTCAATCCAAGGTaGCAGGAACTGCCGCAGCTCCATGGGGAAGCTGTC +
Preference number: 6 (lower is better)
Translates to: GCICPVLTLNPR*QELPQLHGEAV
Trigger: GACAGCTTCCCCATGGAGCTGCGGCAGTTCCTGGCACCTTGGATTGAGAGTCAAGACTGGGCATATGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp GTGGACGAGAACTGCCAGCTGAGCACCTCGGCCACTTaGTCCCAGGTTCCAATTGGCGGCTTAGTGAAGAAG +
Preference number: 6 (lower is better)
Translates to: VDENCQLSTSAT*SQVPIGGLVKK
Trigger: CTTCTTCACTAAGCCGCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GGTGGACGAGAACTGCCAGCTGAGCACCTCGGCCACTaGGTCCCAGGTTCCAATTGGCGGCTTAGTGAAGAA +
Preference number: 6 (lower is better)
Translates to: GGRELPAEHLGH*VPGSNWRLSEE
Trigger: TTCTTCACTAAGCCGCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGCTGGCAGTTCTCGTCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp TCTGCTAATGAAGTTATCCAGTTTTCCAGACGGTCCAGGCAGATGTaGGGAGGGCCTCCGATGCACGCGATCTGCTGCCGCCTCTTCCAG +
Preference number: 6 (lower is better)
Translates to: SANEVIQFSRRSRQM*GGPPMHAICCRLFQ
Trigger: CTGGAAGAGGCGGCAGCAGATCGCGTGCATCGGAGGCCCTCCCAACATCTGCCTGGACCGTCTGGAAAACTGGATAACTTCATTAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS TCA 72 bp GCCGCTCCACCACGAAGGCACTCTTCATTAAGTTTCTaGACAGCTCCACGATCCTCTCCTCCAGCATGGGCC +
Preference number: 6 (lower is better)
Translates to: AAPPRRHSSLSF*TAPRSSPPAWA
Trigger: GGCCCATGCTGGAGGAGAGGATCGTGGAGCTGTTCAGAAACTTAATGAAGAGTGCCTTCGTGGTGGAGCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 72 bp GTGCTCCTGGCTCTCGGGCCTACAGTACTTTCCAAATaGCTCCTCCTTGGGAATGTCGGGGTAGAGGTAGAC +
Preference number: 6 (lower is better)
Translates to: VLLALGPTVLSK*LLLGNVGVEVD
Trigger: GTCTACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGTAGGCCCGAGAGCCAGGAGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GTATTGCTGCAGGTCGTTGGTGTCACACAGATGAACTaGGTCTTCAGGTACGGGGCAGCACCTGGGTCGGCT +
Preference number: 6 (lower is better)
Translates to: VLLQVVGVTQMN*VFRYGAAPGSA
Trigger: AGCCGACCCAGGTGCTGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGACACCAACGACCTGCAGCAATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092671.12
CDS TCA 72 bp GCTGGGCTGCCGTGGCTGCCGTCTGCAGAAACTGCTTaGTTCTTCGAAGGTTGTGCTGATAGAGGACATTGG +
Preference number: 6 (lower is better)
Translates to: AGLPWLPSAETA*FFEGCADRGHW
Trigger: CCAATGTCCTCTATCAGCACAACCTTCGAAGAATCAAGCAGTTTCTGCAGACGGCAGCCACGGCAGCCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138438.2
CDS GCA 72 bp TTCCAGTCAGCCAGCTCTTCATCAGTCAGTGTCTTCTaGACGTACTCCATTGCTGACAAGAGCCCCGCCAGC +
Preference number: 6 (lower is better)
Translates to: FQSASSSSVSVF*TYSIADKSPAS
Trigger: GCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGAAGACACTGACTGATGAAGAGCTGGCTGACTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp GGCAAGGAGTGGGTCTCTAGGTCAATCTTGAGGCCTTaGTGGTACACCTCAGTCTCGAAGGTGATCAGGTGC +
Preference number: 6 (lower is better)
Translates to: GKEWVSRSILRP*WYTSVSKVIRC
Trigger: GCACCTGATCACCTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGATTGACCTAGAGACCCACTCCTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp GCTGAGCACCTCGGCCACTTGGTCCCAGGTTCCAATTaGCGGCTTAGTGAAGAAGTTCACGTTCTTGGGGTT +
Preference number: 6 (lower is better)
Translates to: AEHLGHLVPGSN*RLSEEVHVLGV
Trigger: AACCCCAAGAACGTGAACTTCTTCACTAAGCCGCCAATTGGAACCTGGGACCAAGTGGCCGAGGTGCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp CCCACAGGCATCGGGCCACGATCCGGGCAATTTCCATaGGCTTCTCAAGATACCTGCTCTGCAGAAACTGCT +
Preference number: 6 (lower is better)
Translates to: PTGIGPRSGQFP*ASQDTCSAETA
Trigger: AGCAGTTTCTGCAGAGCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGGATCGTGGCCCGATGCCTGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CAA 72 bp AGCAACCTGACTTTCGTGGTAAACTGGACACCAGTCTaGATGACTAAGGGCCGGTCCGGGTGCATGGGCATG +
Preference number: 6 (lower is better)
Translates to: SNLTFVVNWTPV*MTKGRSGCMGM
Trigger: CATGCCCATGCACCCGGACCGGCCCTTAGTCATCAAGACTGGTGTCCAGTTTACCACGAAAGTCAGGTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GGGGGCTTTGTGCTTAGGATGGCCCGCTCCCGCTCCTaGCTGATGAAACCCATGATGTACCCTTCATTCCAA +
Preference number: 6 (lower is better)
Translates to: GGFVLRMARSRS*LMKPMMYPSFQ
Trigger: TTGGAATGAAGGGTACATCATGGGTTTCATCAGCAAGGAGCGGGAGCGGGCCATCCTAAGCACAAAGCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GTATTGCTGCAGGTCGTTGGTGTCACACAGATGAACTaGGTCTTCAGGTACGGGGCAGCACTACCTGGGTCG +
Preference number: 6 (lower is better)
Translates to: VLLQVVGVTQMN*VFRYGAALPGS
Trigger: CGACCCAGGTAGTGCTGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGACACCAACGACCTGCAGCAATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp AGTCAGCCAGCTCTTCATCAGTCAGTGTCTTCTGCACGTACTCCATaGCTGACAAGAGCCCCGCCAGCTCACTCACAATGCTTCTCCGCA +
Preference number: 6 (lower is better)
Translates to: SQPALHQSVSSARTP*LTRAPPAHSQCFSA
Trigger: TGCGGAGAAGCATTGTGAGTGAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGAAGACACTGACTGATGAAGAGCTGGCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS TCA 72 bp CAATGGTATTGCTGCAGGTCGTTGGTGTCACACAGATaGACTTGGTCTTCAGGTACGGGGCAGCACCTGGGT +
Preference number: 6 (lower is better)
Translates to: QWYCCRSLVSHR*TWSSGTGQHLG
Trigger: ACCCAGGTGCTGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGACACCAACGACCTGCAGCAATACCATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092671.12
CDS GCA 72 bp CCTTGGTGGTACACCTCAGTCTCGAAGGTGATCAGGTaGAGCTCCTCAGTCACGATCAAGGAGGCATCACAA +
Preference number: 6 (lower is better)
Translates to: PWWYTSVSKVIR*SSSVTIKEASQ
Trigger: TTGTGATGCCTCCTTGATCGTGACTGAGGAGCTGCACCTGATCACCTTCGAGACTGAGGTGTACCACCAAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp CCACAGGCATCGGGCCACGATCCGGGCAATTTCCATTaGCTTCTCAAGATACCTGCTCTGCAGAAACTGCTT +
Preference number: 6 (lower is better)
Translates to: PQASGHDPGNFH*LLKIPALQKLL
Trigger: AAGCAGTTTCTGCAGAGCAGGTATCTTGAGAAGCCAATGGAAATTGCCCGGATCGTGGCCCGATGCCTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CCA 72 bp AAGGAGTGGGTCTCTAGGTCAATCTTGAGGCCTTGGTaGTACACCTCAGTCTCGAAGGTGATCAGGTGCAGC +
Preference number: 6 (lower is better)
Translates to: KEWVSRSILRPW*YTSVSKVIRCS
Trigger: GCTGCACCTGATCACCTTCGAGACTGAGGTGTACCACCAAGGCCTCAAGATTGACCTAGAGACCCACTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GCTCTTCATCAGTCAGTGTCTTCTGCACGTACTCCATaGCTGACAAGAGCCCCGCCAGCTCACTCACAATGC +
Preference number: 6 (lower is better)
Translates to: ALHQSVSSARTP*LTRAPPAHSQC
Trigger: GCATTGTGAGTGAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGAAGACACTGACTGATGAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS TCA 72 bp CATGTCAAACGTGAGCGACTCAAACTGCCCTCCTGCTaGGGGCTCAGCACCTTCACCGTTATTTCCAAACTG +
Preference number: 6 (lower is better)
Translates to: HVKRERLKLPSC*GLSTFTVISKL
Trigger: CAGTTTGGAAATAACGGTGAAGGTGCTGAGCCCTCAGCAGGAGGGCAGTTTGAGTCGCTCACGTTTGACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS TCA 72 bp CAATGGTATTGCTGCAGGTCGTTGGTGTCACACAGATaGACTTGGTCTTCAGGTACGGGGCAGCACTACCTG +
Preference number: 6 (lower is better)
Translates to: QWYCCRSLVSHR*TWSSGTGQHYL
Trigger: CAGGTAGTGCTGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGACACCAACGACCTGCAGCAATACCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp CTCCTCCTTGGGAATGTCGGGGTAGAGGTAGACAAGTaGAGACACCAGGATGTTGGTCGCATCCATGATCTT +
Preference number: 6 (lower is better)
Translates to: LLLGNVGVEVDK*RHQDVGRIHDL
Trigger: AAGATCATGGATGCGACCAACATCCTGGTGTCTCCACTTGTCTACCTCTACCCCGACATTCCCAAGGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp TCTCGGGCCTACAGTACTTTCCAAATGCCTCCTCCTTaGGAATGTCGGGGTAGAGGTAGACAAGTGGAGACA +
Preference number: 6 (lower is better)
Translates to: SRAYSTFQMPPP*ECRGRGRQVET
Trigger: TGTCTCCACTTGTCTACCTCTACCCCGACATTCCCAAGGAGGAGGCATTTGGAAAGTACTGTAGGCCCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS TCA 72 bp TTCATCAGTCAGTGTCTTCTGCACGTACTCCATTGCTaGCAAGAGCCCCGCCAGCTCACTCACAATGCTTCT +
Preference number: 6 (lower is better)
Translates to: FISQCLLHVLHC*QEPRQLTHNAS
Trigger: AGAAGCATTGTGAGTGAGCTGGCGGGGCTCTTGTCAGCAATGGAGTACGTGCAGAAGACACTGACTGATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp TTGTTCAGCTGCTGCTTGGTGTATGGCTCTACAGACTaGATCTGGGTCTTGCCACTGATGTCCTTTTCCACC +
Preference number: 6 (lower is better)
Translates to: LFSCCLVYGSTD*IWVLPLMSFST
Trigger: GGTGGAAAAGGACATCAGTGGCAAGACCCAGATCCAGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp CAAACTGCATCAATGAATGGTGTCACACAGATGAACTaGGTCTTCAGGTACGGGGCAGCACTACCTGGGTCG +
Preference number: 6 (lower is better)
Translates to: QTASMNGVTQMN*VFRYGAALPGS
Trigger: CGACCCAGGTAGTGCTGCCCCGTACCTGAAGACCAAGTTCATCTGTGTGACACCATTCATTGATGCAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103114.8
CDS GCA 72 bp AGAGATTATGAAACACCAACGTGGCATGTGACTCTTTaGTGGCTGCATATGCCCAGTCTTGACTCTCAATCC +
Preference number: 6 (lower is better)
Translates to: RDYETPTWHVTL*WLHMPSLDSQS
Trigger: GGATTGAGAGTCAAGACTGGGCATATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATAATCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS GCA 72 bp CCCATGATGATTTCAGCAAATGACATGTTGTTCAGCTaGTGCTTGGTGTATGGCTCTACAGACTGGATCTGG +
Preference number: 6 (lower is better)
Translates to: PMMISANDMLFS*CLVYGSTDWIW
Trigger: CCAGATCCAGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAACATGTCATTTGCTGAAATCATCATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp GATTATGAAACACCAACGTGGCATGTGACTCTTTGCTaGCTGCATATGCCCAGTCTTGACTCTCAATCCAAG +
Preference number: 6 (lower is better)
Translates to: DYETPTWHVTLC*LHMPSLDSQSK
Trigger: CTTGGATTGAGAGTCAAGACTGGGCATATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CCA 72 bp GGTCAATTTCACCCAAGAGATTATGAAACACCAACGTaGCATGTGACTCTTTGCTGGCTGCATATGCCCAGT +
Preference number: 6 (lower is better)
Translates to: GQFHPRDYETPT*HVTLCWLHMPS
Trigger: ACTGGGCATATGCAGCCAGCAAAGAGTCACATGCCACGTTGGTGTTTCATAATCTCTTGGGTGAAATTGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp GGCGGCTTAGTGAAGAAGTTCACGTTCTTGGGGTTATaGGTCAGCATGTTATACCACAGGATTGATGCCCAA +
Preference number: 6 (lower is better)
Translates to: GGLVKKFTFLGL*VSMLYHRIDAQ
Trigger: TTGGGCATCAATCCTGTGGTATAACATGCTGACCAATAACCCCAAGAACGTGAACTTCTTCACTAAGCCGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp GTTGTGCTGATAGAGGACATTGGACTCTTGCAGGAATCGGCTATATaGCTGGTCAATTTCACCCAAGAGATTATGAAACACCAACGTGGC +
Preference number: 6 (lower is better)
Translates to: VVLIEDIGLLQESAI*LVNFTQEIMKHQRG
Trigger: GCCACGTTGGTGTTTCATAATCTCTTGGGTGAAATTGACCAGCAATATAGCCGATTCCTGCAAGAGTCCAATGTCCTCTATCAGCACAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS TCA 72 bp TTGGCTTCTCAAGATACCTGCTCTGCAGAAACTGCTTaGTTCTTCGAAGGTTGTGCTGATAGAGGACATTGG +
Preference number: 6 (lower is better)
Translates to: LASQDTCSAETA*FFEGCADRGHW
Trigger: CCAATGTCCTCTATCAGCACAACCTTCGAAGAATCAAGCAGTTTCTGCAGAGCAGGTATCTTGAGAAGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
CDS CAA 72 bp TCTTCGAAGGTTGTGCTGATAGAGGACATTGGACTCTaGCAGGAATCGGCTATATTGCTGGTCAATTTCACC +
Preference number: 6 (lower is better)
Translates to: SSKVVLIEDIGL*QESAILLVNFT
Trigger: GGTGAAATTGACCAGCAATATAGCCGATTCCTGCAAGAGTCCAATGTCCTCTATCAGCACAACCTTCGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp ATGATTTCAGCAAATGACATGTTGTTCAGCTGCTGCTaGGTGTATGGCTCTACAGACTGGATCTGGGTCTTG +
Preference number: 6 (lower is better)
Translates to: MISANDMLFSCC*VYGSTDWIWVL
Trigger: CAAGACCCAGATCCAGTCTGTAGAGCCATACACCAAGCAGCAGCTGAACAACATGTCATTTGCTGAAATCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 90 bp CTGCTTGATTCTTCGAAGGTTGTGCTGATAGAGGACATTGGACTCTaGCAGGAATCGGCTATATTGCTGGTCAATTTCACCCAAGAGATT +
Preference number: 6 (lower is better)
Translates to: LLDSSKVVLIEDIGL*QESAILLVNFTQEI
Trigger: AATCTCTTGGGTGAAATTGACCAGCAATATAGCCGATTCCTGCAAGAGTCCAATGTCCTCTATCAGCACAACCTTCGAAGAATCAAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2
CDS CAA 72 bp ATAGAGGACATTGGACTCTTGCAGGAATCGGCTATATaGCTGGTCAATTTCACCCAAGAGATTATGAAACAC +
Preference number: 6 (lower is better)
Translates to: IEDIGLLQESAI*LVNFTQEIMKH
Trigger: GTGTTTCATAATCTCTTGGGTGAAATTGACCAGCAATATAGCCGATTCCTGCAAGAGTCCAATGTCCTCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092671.12
ENSMUST00000103114.8
ENSMUST00000127638.8
ENSMUST00000138438.2