Pregenerated sensors for STARD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018167Ensembl transcript IDs: ENSMUST00000018311.5
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGCAATCGGAAGCTCTCCTGCCCCACCTAAGCCCAGGTCCTCTGTaGCCAAGTCTAAGATGCCCAGTGAGGCATGCAGACAGTCTCCGG | + |
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Preference number: 1 (lower is better) Translates to: WQSEALLPHLSPGPL*PSLRCPVRHADSLR Trigger: CCGGAGACTGTCTGCATGCCTCACTGGGCATCTTAGACTTGGTCACAGAGGACCTGGGCTTAGGTGGGGCAGGAGAGCTTCCGATTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR GCA 90 bp | CCTTCAGTCTGGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTaGTCAGGACCCTGTTCCTGGGCAGTATGGCTTAGTGGACTACGA | + |
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Preference number: 1 (lower is better) Translates to: PSVWETPSPGTEPHN*SGPCSWAVWLSGLR Trigger: TCGTAGTCCACTAAGCCATACTGCCCAGGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCCAGACTGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGTATGGCTTAGTGGACTACGACAGCCAGGGAATGAGGTGCCACCTCTGCCAGTGGACAGAACCCTaGCCCGCAGGGTGGCGTGGG | + |
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Preference number: 2 (lower is better) Translates to: GQYGLVDYDSQGMRCHLCQWTEP*PAGWRG Trigger: CCCACGCCACCCTGCGGGCCAGGGTTCTGTCCACTG...GCAGAGGTGGCACCTCATTCCCTGGCTGTCGTAGTCCACTAAGCCATACTGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR-3UTR CCA 90 bp | CAGTCTGGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTTGGCTCCGGAGGCAGTaGACAGAACCCTGGCCCGCA | + |
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Preference number: 2 (lower is better) Translates to: QSGKPRVQVLNPTTAQDPWLRRQ*TEPWPA Trigger: TGCGGGCCAGGGTTCTGTCCACTGCCTCCGGAGCCA...AGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCCAGACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR-3UTR CCA 90 bp | TCTGTGACCAAGTCTAAGATGCCCAGTGAGGCATGCAGACAGTCTCCGGCAGAAAACAGTTCCACTTTCTaGCTCCGGAGGCAGTGGACA | + |
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Preference number: 2 (lower is better) Translates to: SVTKSKMPSEACRQSPAENSSTF*LRRQWT Trigger: TGTCCACTGCCTCCGGAGCCAGAAAGTGGAACTGTT...TTCTGCCGGAGACTGTCTGCATGCCTCACTGGGCATCTTAGACTTGGTCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR-3UTR TCA 90 bp | CCCTTCACTAATGGTACAAAACTTAGAGAGCTCCCTCACCTTCACACTGGCAATACGACAGCCAGGGAATaGGGTGCCACCTCTGCTTAT | + |
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Preference number: 2 (lower is better) Translates to: PFTNGTKLRELPHLHTGNTTARE*GATSAY Trigger: ATAAGCAGAGGTGGCACCTCATTCCCTGGCTGTCGT...ATTGCCAGTGTGAAGGTGAGGGAGCTCTCTAAGTTTTGTACCATTAGTGAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR-3UTR CCA 90 bp | ATGTTTTTAATTGGCTCAAATCATTACAAAGGTCCCCAAGAAGGCCTTCGTAGACCAGCTCCTTCAGTCTaGGAAACCCCGAGTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: MFLIGSNHYKGPQEGLRRPAPSV*ETPSPG Trigger: ACCTGGACTCGGGGTTTCCCAGACTGAAGGAGCTGG...TCTACGAAGGCCTTCTTGGGGACCTTTGTAATGATTTGAGCCAATTAAAAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR CCA 72 bp | AAGCCAAACAGTTCCACTTTCTGGCTCCGGAGGCAGTaGACAGAACCCTGGCCCGCAGGGTGGCGTGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: KPNSSTFWLRRQ*TEPWPAGWRGS Trigger: GCTCCCACGCCACCCTGCGGGCCAGGGTTCTGTCCACTGCCTCCGGAGCCAGAAAGTGGAACTGTTTGGCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| 3UTR GCA 72 bp | TGGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTaGTCAGGACCCTGTTCCTGGGCAGTATGGCTTAGT | + |
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Preference number: 3 (lower is better) Translates to: WETPSPGTEPHN*SGPCSWAVWLS Trigger: ACTAAGCCATACTGCCCAGGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | AAGGCCTTCGTAGAGGGTAAGGGCGCGGAGAGGCAGGAGCGCAGTGCCGTCCCCGTAGCTTCCTTTCCCTaGCGGATGTACTCCCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: KAFVEGKGAERQERSAVPVASFP*RMYSRS Trigger: GGAGCGGGAGTACATCCGGCAGGGAAAGGAAGCTAC...GGGGACGGCACTGCGCTCCTGCCTCTCCGCGCCCTTACCCTCTACGAAGGCCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | GGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTGTTCCTCCAGGGCCGGCAAACTaGGCTCCAAGTCACAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GKPRVQVLNPTTAQDPVPPGPAN*APSHRP Trigger: TGGCCTGTGACTTGGAGCGCAGTTTGCCGGCCCTGG...AGGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | AAGGCCTTCGTAGAGGGTAAGGGCGCGGAGAGGCAGGAGCGCAGTGCCGTCCCCTTCATTGTCAGACCCTaGAAAGGATTCTGGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: KAFVEGKGAERQERSAVPFIVRP*KGFWGR Trigger: TCTCCCCCAGAATCCTTTGCAGGGTCTGACAATGAA...GGGGACGGCACTGCGCTCCTGCCTCTCCGCGCCCTTACCCTCTACGAAGGCCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | TCCCTCACCTTCACACTGGCAATCGGAAGCTCTCCTGCCCCACCTAAGCCCAGGTGTGAGGAGAGGCTCTaGCTGTGGGACAGTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SLTFTLAIGSSPAPPKPRCEERL*LWDSEV Trigger: CACCTCACTGTCCCACAGCCAGAGCCTCTCCTCACA...CCTGGGCTTAGGTGGGGCAGGAGAGCTTCCGATTGCCAGTGTGAAGGTGAGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | GGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTGTTCCTTCCTGGGCCAAGATCTaGTCCACCACCGCAGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: GKPRVQVLNPTTAQDPVPSWAKI*STTAVA Trigger: AGCTACTGCGGTGGTGGATCAGATCTTGGCCCAGGA...AGGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | GAAGTCAGCATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGTCGAAGAGGCAGAAGGTaGGGCGGACGTCGGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: EVSIGKTVPAPSVWETPSRRGRR*GGRRRW Trigger: CCATCTCCGACGTCCGCCGCACCTTCTGCCTCTTCG...ACTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTATGCTGACTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | AGAAGTCAGCATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGCCAGAGGTGGCGGGATaGAGTGTGAGGAGAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RSQHRQNSPSSFSLGNPEPEVAG*SVRRGS Trigger: AGAGCCTCTCCTCACACTTCATCCCGCCACCTCTGG...CTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTATGCTGACTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | GGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTGTTCCTGGACGAAAGAGACAATaGGGAGCAGGTACCCGAATG | + |
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Preference number: 4 (lower is better) Translates to: GKPRVQVLNPTTAQDPVPGRKRQ*GAGTRM Trigger: CATTCGGGTACCTGCTCCCCATTGTCTCTTTCGTCC...AGGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | AGAGCTCCCTCACCTTCACACTGGCAATCGGAAGCTCTCCTGCCCCACCTAAGCGGAAGGTCTTCAAGATaGAGGTCTTGCCATGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RAPSPSHWQSEALLPHLSGRSSR*RSCHGR Trigger: CCTTCCATGGCAAGACCTTCATCTTGAAGACCTTCC...GCTTAGGTGGGGCAGGAGAGCTTCCGATTGCCAGTGTGAAGGTGAGGGAGCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | TGGCTTAGTGGACTACGACAGCCAGGGAATGAGGTGCCACCTCTGCTTATCACACCGGGGGTTGTTGGCTaGCTTGAGCACAATGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: WLSGLRQPGNEVPPLLITPGVVG*LEHNEA Trigger: GGCTTCATTGTGCTCAAGTCAGCCAACAACCCCCGG...TGTGATAAGCAGAGGTGGCACCTCATTCCCTGGCTGTCGTAGTCCACTAAGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | ATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGTCCAGGTACTGCAATCACCCACCAGTaGTGGAGACGGAGCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: IGKTVPAPSVWETPSPGTAITHQ*WRRSTA Trigger: TGCTGTGCTCCGTCTCCAGCACTGGTGGGTGATTGC...AGTACCTGGACTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | TCCCTCACCTTCACACTGGCAATCGGAAGCTCTCCTGCCCCACCTAAGCCCAGGCTTGACAATGAGGAATaGACTGGACACCAGTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SLTFTLAIGSSPAPPKPRLDNEE*TGHQCG Trigger: ACCACACTGGTGTCCAGTGCATTCCTCATTGTCAAG...CCTGGGCTTAGGTGGGGCAGGAGAGCTTCCGATTGCCAGTGTGAAGGTGAGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | CAGGAAAGCCAAACAGTTCCACTTTCTGGCTCCGGAGGCAGTGGACAGAACCCTAGTGTGTGGTGGCAATaGCGGATGACAGGTATCGGT | + |
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Preference number: 4 (lower is better) Translates to: QESQTVPLSGSGGSGQNPSVWWQ*RMTGIG Trigger: ACCGATACCTGTCATCCGGCATTGCCACCACACACT...AGGGTTCTGTCCACTGCCTCCGGAGCCAGAAAGTGGAACTGTTTGGCTTTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | GGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTGTTCCTATGTACTCCCGCTCCTaGGCAGAGAAACTTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GKPRVQVLNPTTAQDPVPMYSRS*AEKLFF Trigger: GAAGAAAAGTTTCTCTGCCCAGGAGCGGGAGTACAT...AGGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | GAAGTCAGCATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGTACCTGCAGCTCCGGATaGCACATCATAGGAGACAAG | + |
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Preference number: 4 (lower is better) Translates to: EVSIGKTVPAPSVWETPSTCSSG*HIIGDK Trigger: CTTGTCTCCTATGATGTGTCATCCGGAGCTGCAGGT...ACTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTATGCTGACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | CAGGAAAGCCAAACAGTTCCACTTTCTGGCTCCGGAGGCAGTGGACAGAACCCTACACGCTGCCGCAGGTaGAAGGCAAATTCAAACATG | + |
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Preference number: 4 (lower is better) Translates to: QESQTVPLSGSGGSGQNPTRCRR*KANSNM Trigger: CATGTTTGAATTTGCCTTTCACCTGCGGCAGCGTGT...AGGGTTCTGTCCACTGCCTCCGGAGCCAGAAAGTGGAACTGTTTGGCTTTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | AGCAGCAGGAAAGCCAAACAGTTCCACTTTCTGGCTCCGGAGGCAGTGGACAGACCTGGGGTAAGACTTTaGAATCAAGGAACCAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SSRKAKQFHFLAPEAVDRPGVRL*NQGTRS Trigger: AGACCTGGTTCCTTGATTTCAAAGTCTTACCCCAGG...TCTGTCCACTGCCTCCGGAGCCAGAAAGTGGAACTGTTTGGCTTTCCTGCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | ATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGTCCAGGTACTGGTGACTTCCTCATCTaGTTCATTGTCAGACCCTGC | + |
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Preference number: 4 (lower is better) Translates to: IGKTVPAPSVWETPSPGTGDFLI*FIVRPC Trigger: GCAGGGTCTGACAATGAATCAGATGAGGAAGTCACC...AGTACCTGGACTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR TCA 90 bp | ATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGTCCAGGTACTTGCAGGATTACTTCCTaGTACACCAGCTCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IGKTVPAPSVWETPSPGTCRITS*YTSSAG Trigger: TCCTGCTGAGCTGGTGTATCAGGAAGTAATCCTGCA...AGTACCTGGACTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | ATAGGCAAAACAGTCCCAGCTCCTTCAGTCTGGGAAACCCCGAGTCCAGGTACTCAAATTCAAACATGGTaGCCCCAAGGCTCTGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: IGKTVPAPSVWETPSPGTQIQTW*PQGSGG Trigger: TCCACCAGAGCCTTGGGGCCACCATGTTTGAATTTG...AGTACCTGGACTCGGGGTTTCCCAGACTGAAGGAGCTGGGACTGTTTTGCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | TGGCTTAGTGGACTACGACAGCCAGGGAATGAGGTGCCACCTCTGCTTATCACAAGGCAAATTCAAACATaGTGGCCCCAAGGCTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: WLSGLRQPGNEVPPLLITRQIQT*WPQGSG Trigger: ACCAGAGCCTTGGGGCCACCATGTTTGAATTTGCCT...TGTGATAAGCAGAGGTGGCACCTCATTCCCTGGCTGTCGTAGTCCACTAAGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | ACAGACCCCTTCACTAATGGTACAAAACTTAGAGAGCTCCCTCACCTTCACACTCGGGCAACAGCAGCCTaGGCAGCAAGATACCATCTC | + |
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Preference number: 4 (lower is better) Translates to: TDPFTNGTKLRELPHLHTRATAA*AARYHL Trigger: GAGATGGTATCTTGCTGCCCAGGCTGCTGTTGCCCG...AGTGTGAAGGTGAGGGAGCTCTCTAAGTTTTGTACCATTAGTGAAGGGGTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | CCCTTCACTAATGGTACAAAACTTAGAGAGCTCCCTCACCTTCACACTGGCAATGAGCAGGTACCCGAATaGCCCTTTGCTGAGCAACTC | + |
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Preference number: 4 (lower is better) Translates to: PFTNGTKLRELPHLHTGNEQVPE*PFAEQL Trigger: GAGTTGCTCAGCAAAGGGGCATTCGGGTACCTGCTC...ATTGCCAGTGTGAAGGTGAGGGAGCTCTCTAAGTTTTGTACCATTAGTGAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | TGGCTTAGTGGACTACGACAGCCAGGGAATGAGGTGCCACCTCTGCTTATCACAATGAAGGTCTTGCCATaGAAGGGAACTTCAATGGTG | + |
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Preference number: 4 (lower is better) Translates to: WLSGLRQPGNEVPPLLITMKVLP*KGTSMV Trigger: CACCATTGAAGTTCCCTTCCATGGCAAGACCTTCAT...TGTGATAAGCAGAGGTGGCACCTCATTCCCTGGCTGTCGTAGTCCACTAAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | ACAGACCCCTTCACTAATGGTACAAAACTTAGAGAGCTCCCTCACCTTCACACTGGAAGGGAACTTCAATaGTGTACACAGTGTCCCCAT | + |
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Preference number: 4 (lower is better) Translates to: TDPFTNGTKLRELPHLHTGRELQ*CTQCPH Trigger: ATGGGGACACTGTGTACACCATTGAAGTTCCCTTCC...AGTGTGAAGGTGAGGGAGCTCTCTAAGTTTTGTACCATTAGTGAAGGGGTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR GCA 90 bp | ACAGACCCCTTCACTAATGGTACAAAACTTAGAGAGCTCCCTCACCTTCACACTCCAAGTTCTTCCGGATaGCAGTGTTGGTATTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: TDPFTNGTKLRELPHLHTPSSSG*QCWYLA Trigger: AGCTAAATACCAACACTGGCATCCGGAAGAACTTGG...AGTGTGAAGGTGAGGGAGCTCTCTAAGTTTTGTACCATTAGTGAAGGGGTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CCA 90 bp | ATGTTTTTAATTGGCTCAAATCATTACAAAGGTCCCCAAGAAGGCCTTCGTAGACCCTGCAAAGGATTCTaGGGGAGAGTAGAACTGGCC | + |
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Preference number: 4 (lower is better) Translates to: MFLIGSNHYKGPQEGLRRPCKGF*GRVELA Trigger: GGCCAGTTCTACTCTCCCCCAGAATCCTTTGCAGGG...TCTACGAAGGCCTTCTTGGGGACCTTTGTAATGATTTGAGCCAATTAAAAACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CAA 90 bp | AAGGCCTTCGTAGAGGGTAAGGGCGCGGAGAGGCAGGAGCGCAGTGCCGTCCCCGTGCAGACCCGGGGGTaGTTGGCTGACTTGAGCACA | + |
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Preference number: 5 (lower is better) Translates to: KAFVEGKGAERQERSAVPVQTRG*LADLST Trigger: TGTGCTCAAGTCAGCCAACAACCCCCGGGTCTGCAC...GGGGACGGCACTGCGCTCCTGCCTCTCCGCGCCCTTACCCTCTACGAAGGCCTT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CAA 90 bp | GGGCAGTATGGCTTAGTGGACTACGACAGCCAGGGAATGAGGTGCCACCTCTGCCAGGCAGTCACCGTCTaGTTCCACAGCACCATCCTC | + |
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Preference number: 5 (lower is better) Translates to: GQYGLVDYDSQGMRCHLCQAVTV*FHSTIL Trigger: GAGGATGGTGCTGTGGAACAAGACGGTGACTGCCTG...GCAGAGGTGGCACCTCATTCCCTGGCTGTCGTAGTCCACTAAGCCATACTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS GCA 90 bp | TGGAGCAGTGTGTGGTGGCAATGCCGGATGACAGGTATCGGTCTCTaGGCCGCTCAATACGTCGGACATTCACAAAGTCCCTGGGGGACA | + |
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Preference number: 5 (lower is better) Translates to: WSSVWWQCRMTGIGL*AAQYVGHSQSPWGT Trigger: TGTCCCCCAGGGACTTTGTGAATGTCCGACGTATTGAGCGGCGCAGAGACCGATACCTGTCATCCGGCATTGCCACCACACACTGCTCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CCA 90 bp | ATCGGTCTCTGCGCCGCTCAATACGTCGGACATTCACAAAGTCCCTaGGGGACACAACGCCACCTGCAGCTCCGGATGACACATCATAGG | + |
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Preference number: 5 (lower is better) Translates to: IGLCAAQYVGHSQSP*GTQRHLQLRMTHHR Trigger: CCTATGATGTGTCATCCGGAGCTGCAGGTGGCGTTGTGTCCCCCAGGGACTTTGTGAATGTCCGACGTATTGAGCGGCGCAGAGACCGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CAA 90 bp | TGGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTGTTCCTACCCGAATGCCCCTTaGCTGAGCAACTCAGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: WETPSPGTEPHNCSGPCSYPNAP*LSNSER Trigger: CCTTTCTGAGTTGCTCAGCAAAGGGGCATTCGGGTA...GGAACAGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 90 bp | TCGTTACTCCTCTCGAACTTCCAGTTCTCCTCCTGGGCCAAGATCTaGTCCACCACCGCAGTAGCTTCCTTTCCCTGCCGGATGTACTCC | + |
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Preference number: 5 (lower is better) Translates to: SLLLSNFQFSSWAKI*STTAVASFPCRMYS Trigger: GGAGTACATCCGGCAGGGAAAGGAAGCTACTGCGGTGGTGGATCAGATCTTGGCCCAGGAGGAGAACTGGAAGTTCGAGAGGAGTAACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CAA 90 bp | CAGTCTGGGAAACCCCGAGTCCAGGTACTGAACCCCACAACTGCTCAGGACCCTTCCTGGGGTAAGACTTaGAAATCAAGGAACCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: QSGKPRVQVLNPTTAQDPSWGKT*KSRNQV Trigger: GACCTGGTTCCTTGATTTCAAAGTCTTACCCCAGGA...AGGGTCCTGAGCAGTTGTGGGGTTCAGTACCTGGACTCGGGGTTTCCCAGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 90 bp | GTCTTGTTCCACAGCACCATCCTCTCAGGCTGCAGGATTACTTCCTaGTACACCAGCTCAGCAGGACAGGGCAGGAAGGTCTTCAAGATG | + |
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Preference number: 5 (lower is better) Translates to: VLFHSTILSGCRITS*YTSSAGQGRKVFKM Trigger: CATCTTGAAGACCTTCCTGCCCTGTCCTGCTGAGCTGGTGTATCAGGAAGTAATCCTGCAGCCTGAGAGGATGGTGCTGTGGAACAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS GCA 90 bp | CCCTTTGCTGAGCAACTCAGAAAGGATGACCTTGACAATGAGGAATaGACTGGACACCAGTGTGGTGACCGCAATCACCCACCAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: PFAEQLRKDDLDNEE*TGHQCGDRNHPPVL Trigger: CAGCACTGGTGGGTGATTGCGGTCACCACACTGGTGTCCAGTGCATTCCTCATTGTCAAGGTCATCCTTTCTGAGTTGCTCAGCAAAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CAA 90 bp | AGAGCTCCCTCACCTTCACACTGGCAATCGGAAGCTCTCCTGCCCCACCTAAGCTCAGAAAGGATGACCTaGACAATGAGGAATGCACTG | + |
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Preference number: 5 (lower is better) Translates to: RAPSPSHWQSEALLPHLSSERMT*TMRNAL Trigger: CAGTGCATTCCTCATTGTCAAGGTCATCCTTTCTGA...GCTTAGGTGGGGCAGGAGAGCTTCCGATTGCCAGTGTGAAGGTGAGGGAGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 90 bp | CAGCAAGATACCATCTCTCCTCTTCAGCCTCCTGGGGTAAGACTTTaGAATCAAGGAACCAGGTCTCCAGCCAGGCCAGGACGAAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: QQDTISPLQPPGVRL*NQGTRSPARPGRKR Trigger: TCTCTTTCGTCCTGGCCTGGCTGGAGACCTGGTTCCTTGATTTCAAAGTCTTACCCCAGGAGGCTGAAGAGGAGAGATGGTATCTTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 90 bp | GCCGGATGTACTCCCGCTCCTGGGCAGAGAAACTTTTCTTCCCGGTaGCTTCCTCATCTGATTCATTGTCAGACCCTGCAAAGGATTCTG | + |
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Preference number: 5 (lower is better) Translates to: AGCTPAPGQRNFSSR*LPHLIHCQTLQRIL Trigger: CAGAATCCTTTGCAGGGTCTGACAATGAATCAGATGAGGAAGTCACCGGGAAGAAAAGTTTCTCTGCCCAGGAGCGGGAGTACATCCGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS-3UTR CAA 90 bp | AGCAGCAGGAAAGCCAAACAGTTCCACTTTCTGGCTCCGGAGGCAGTGGACAGATTCAAGATGAAGGTCTaGCCATGGAAGGGAACTTCA | + |
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Preference number: 5 (lower is better) Translates to: SSRKAKQFHFLAPEAVDRFKMKV*PWKGTS Trigger: TGAAGTTCCCTTCCATGGCAAGACCTTCATCTTGAA...TCTGTCCACTGCCTCCGGAGCCAGAAAGTGGAACTGTTTGGCTTTCCTGCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 72 bp | GCTCGGGCCCCCAGCTCTCCAACACGCTGCCGCAGGTaGAAGGCAAATTCAAACATGGTGGCCCCAAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: ARAPSSPTRCRR*KANSNMVAPRL Trigger: GAGCCTTGGGGCCACCATGTTTGAATTTGCCTTTCACCTGCGGCAGCGTGTTGGAGAGCTGGGGGCCCGAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CCA 72 bp | CCGGAGAACAGCAGGGGTCCACGGGCAACAGCAGCCTaGGCAGCAAGATACCATCTCTCCTCTTCAGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: PENSRGPRATAA*AARYHLSSSAS Trigger: GGAGGCTGAAGAGGAGAGATGGTATCTTGCTGCCCAGGCTGCTGTTGCCCGTGGACCCCTGCTGTTCTCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CCA 72 bp | TGCGCCGCTCAATACGTCGGACATTCACAAAGTCCCTaGGGGACACAACGCCACCTGCAGCTCCGGATGACA | + |
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Preference number: 6 (lower is better) Translates to: CAAQYVGHSQSP*GTQRHLQLRMT Trigger: TGTCATCCGGAGCTGCAGGTGGCGTTGTGTCCCCCAGGGACTTTGTGAATGTCCGACGTATTGAGCGGCGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 72 bp | CTCTCGAACTTCCAGTTCTCCTCCTGGGCCAAGATCTaGTCCACCACCGCAGTAGCTTCCTTTCCCTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: LSNFQFSSWAKI*STTAVASFPCR Trigger: CCGGCAGGGAAAGGAAGCTACTGCGGTGGTGGATCAGATCTTGGCCCAGGAGGAGAACTGGAAGTTCGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 72 bp | GTCCCTGGGGGACACAACGCCACCTGCAGCTCCGGATaGCACATCATAGGAGACAAGGGTGTTGTCCTCTAC | + |
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Preference number: 6 (lower is better) Translates to: VPGGHNATCSSG*HIIGDKGVVLY Trigger: GTAGAGGACAACACCCTTGTCTCCTATGATGTGTCATCCGGAGCTGCAGGTGGCGTTGTGTCCCCCAGGGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 72 bp | CACAGCACCATCCTCTCAGGCTGCAGGATTACTTCCTaGTACACCAGCTCAGCAGGACAGGGCAGGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: HSTILSGCRITS*YTSSAGQGRKV Trigger: GACCTTCCTGCCCTGTCCTGCTGAGCTGGTGTATCAGGAAGTAATCCTGCAGCCTGAGAGGATGGTGCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS GCA 72 bp | GTGTGGTGGCAATGCCGGATGACAGGTATCGGTCTCTaGGCCGCTCAATACGTCGGACATTCACAAAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VWWQCRMTGIGL*AAQYVGHSQSP Trigger: GGGACTTTGTGAATGTCCGACGTATTGAGCGGCGCAGAGACCGATACCTGTCATCCGGCATTGCCACCACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CAA 72 bp | GTGTTAAGAATCCAGACGAAGGTGCAGACCCGGGGGTaGTTGGCTGACTTGAGCACAATGAAGCCTCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: VLRIQTKVQTRG*LADLSTMKPPG Trigger: CCCCGGAGGCTTCATTGTGCTCAAGTCAGCCAACAACCCCCGGGTCTGCACCTTCGTCTGGATTCTTAACAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CAA 90 bp | TTAAGATCTGTGTTAAGAATCCAGACGAAGGTGCAGACCCGGGGGTaGTTGGCTGACTTGAGCACAATGAAGCCTCCGGGGCCGTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LRSVLRIQTKVQTRG*LADLSTMKPPGPFS Trigger: GGAGAACGGCCCCGGAGGCTTCATTGTGCTCAAGTCAGCCAACAACCCCCGGGTCTGCACCTTCGTCTGGATTCTTAACACAGATCTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS GCA 72 bp | CAGGACGAAAGAGACAATGGGGAGCAGGTACCCGAATaGCCCTTTGCTGAGCAACTCAGAAAGGATGACCTT | + |
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Preference number: 6 (lower is better) Translates to: QDERDNGEQVPE*PFAEQLRKDDL Trigger: AAGGTCATCCTTTCTGAGTTGCTCAGCAAAGGGGCATTCGGGTACCTGCTCCCCATTGTCTCTTTCGTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CCA 72 bp | AAGGCAAATTCAAACATGGTGGCCCCAAGGCTCTGGTaGATAAGGTACCGAGGCAAGCGGCCCTTAAGATCT | + |
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Preference number: 6 (lower is better) Translates to: KANSNMVAPRLW*IRYRGKRPLRS Trigger: AGATCTTAAGGGCCGCTTGCCTCGGTACCTTATCCACCAGAGCCTTGGGGCCACCATGTTTGAATTTGCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS GCA 72 bp | GAGCAACTCAGAAAGGATGACCTTGACAATGAGGAATaGACTGGACACCAGTGTGGTGACCGCAATCACCCA | + |
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Preference number: 6 (lower is better) Translates to: EQLRKDDLDNEE*TGHQCGDRNHP Trigger: TGGGTGATTGCGGTCACCACACTGGTGTCCAGTGCATTCCTCATTGTCAAGGTCATCCTTTCTGAGTTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CCA 72 bp | CAGGGCAGGAAGGTCTTCAAGATGAAGGTCTTGCCATaGAAGGGAACTTCAATGGTGTACACAGTGTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: QGRKVFKMKVLP*KGTSMVYTVSP Trigger: TGGGGACACTGTGTACACCATTGAAGTTCCCTTCCATGGCAAGACCTTCATCTTGAAGACCTTCCTGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS TCA 72 bp | GGCAGAGAAACTTTTCTTCCCGGTGACTTCCTCATCTaGTTCATTGTCAGACCCTGCAAAGGATTCTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: GRETFLPGDFLI*FIVRPCKGFWG Trigger: CCCCCAGAATCCTTTGCAGGGTCTGACAATGAATCAGATGAGGAAGTCACCGGGAAGAAAAGTTTCTCTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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| CDS CAA 72 bp | AAAGAGACAATGGGGAGCAGGTACCCGAATGCCCCTTaGCTGAGCAACTCAGAAAGGATGACCTTGACAATG | + |
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Preference number: 6 (lower is better) Translates to: KETMGSRYPNAP*LSNSERMTLTM Trigger: CATTGTCAAGGTCATCCTTTCTGAGTTGCTCAGCAAAGGGGCATTCGGGTACCTGCTCCCCATTGTCTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018311.5 |
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