Pregenerated sensors for STAP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038781Ensembl transcript IDs: ENSMUST00000043785.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CCAAAATTCTCAGGGCTCTCCCTGCTTTACTTGAGGGAGGTTATTTaGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: PKFSGLSLLYLREVI*AVSYPLSEDRAGRR Trigger: TCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAGGGAGAGCCCTGAGAATTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | TACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTCGCTCCAGGAGCAGCTaGGCCTCGAGCCTGCTCACC | + |
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Preference number: 4 (lower is better) Translates to: YLREVILAVSYPLSEDRARSRSS*ASSLLT Trigger: GGTGAGCAGGCTCGAGGCGCAGCTGCTCCTGGAGCG...AGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGACAGACACACTGTCCTTaGCATCCCCGCCAGGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: LREVILAVSYPLSEDRAGQTHCP*HPRQAA Trigger: TGCGGCCTGGCGGGGATGGCAAGGACAGTGTGTCTG...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | CTGCTTTACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATCTTGGGACCCCGGGGTaGACTCAGGGCTGTGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LLYLREVILAVSYPLSEDLGTPG*TQGCGH Trigger: ATGGCCACAGCCCTGAGTCCACCCCGGGGTCCCAAG...ATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGACAGGTTCCCGCACTCTaGGTAGCGCTCCAGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LREVILAVSYPLSEDRAGQVPAL*VALQEQ Trigger: CTGCTCCTGGAGCGCTACCCAGAGTGCGGGAACCTG...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGACCCGGAGAACCAGGCTaGAGTGATAGGCAGTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LREVILAVSYPLSEDRAGPGEPG*SDRQCP Trigger: GGGACACTGCCTATCACTTCAGCCTGGTTCTCCGGG...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGATCGAGCCTGCTCACCTaGAGAAAGCACCAGGGCACC | + |
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Preference number: 4 (lower is better) Translates to: LREVILAVSYPLSEDRAGSSLLT*RKHQGT Trigger: GGTGCCCTGGTGCTTTCTTCAGGTGAGCAGGCTCGA...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | TACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAGGGCACAGCCCATaGACTCTCGCCATTCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: YLREVILAVSYPLSEDRAGGHSP*TLAILP Trigger: CGGGAGAATGGCGAGAGTGCATGGGCTGTGCCCTCC...AGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | GAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGAATAGGCAGTGTCCCGTaGGCTTCCCAGCAGAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: EVILAVSYPLSEDRAGRRIGSVP*ASQQSL Trigger: GAGGCTCTGCTGGGAAGCTCACGGGACACTGCCTAT...TCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGATGGCTTTGGGGGTTTTaGTGGGAGCCTTGCCGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LREVILAVSYPLSEDRAGWLWGF*WEPCRL Trigger: AAGCCGGCAAGGCTCCCAGCAAAACCCCCAAAGCCA...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | GAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGAGCCTTGCCGGCTTCTTaGGCTTCAGAGGGACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: EVILAVSYPLSEDRAGRRALPAS*ASEGLP Trigger: AGGCAGTCCCTCTGAAGCCCAAGAAGCCGGCAAGGC...TCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGATCCGTACCTCCTCTTTaGTCAGGACCTCGGCCATCA | + |
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Preference number: 4 (lower is better) Translates to: LREVILAVSYPLSEDRAGSVPPL*SGPRPS Trigger: TGATGGCCGAGGTCCTGACCAAAGAGGAGGTACGGA...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | GAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGAACAAGGGAGGAAGCCTaGGACGAGCTTCCACCTAGC | + |
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Preference number: 4 (lower is better) Translates to: EVILAVSYPLSEDRAGRRTREEA*DELPPS Trigger: GCTAGGTGGAAGCTCGTCCCAGGCTTCCTCCCTTGT...TCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | TTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGACTATTGTACCAGATGGCTAAACCCTaGAGGCCTGCCCAGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: LAVSYPLSEDRAGRRLLYQMAKP*RPAQNF Trigger: GAAGTTCTGGGCAGGCCTCCAGGGTTTAGCCATCTG...GTACAATAGTCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| 3UTR CAA 72 bp | TCAGGGCTCTCCCTGCTTTACTTGAGGGAGGTTATTTaGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: SGLSLLYLREVI*AVSYPLSEDRA Trigger: AGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAGGGAGAGCCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | CTGCTTTACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATCTTCCAGCTCAGCGGTaGTATCCCCAAGTCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LLYLREVILAVSYPLSEDLPAQR*YPQVLS Trigger: TGACAAGACTTGGGGATATCACCGCTGAGCTGGAAG...ATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | CTGCTTTACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATGGCAACTTGTCTTCCTaGCTGGACACAGACACAGGT | + |
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Preference number: 4 (lower is better) Translates to: LLYLREVILAVSYPLSEDGNLSS*LDTDTG Trigger: ACCTGTGTCTGTGTCCAGCCAGGAAGACAAGTTGCC...ATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | ATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGACTATTGCTTTGGGGGTTTTGCTaGGAGCCTTGCCGGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: ILAVSYPLSEDRAGRRLLLWGFC*EPCRLL Trigger: AAGAAGCCGGCAAGGCTCCCAGCAAAACCCCCAAAG...CAATAGTCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | CTGCTTTACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATCTCATCTCTGAGCTTTaGAAACAGCCTCAGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LLYLREVILAVSYPLSEDLISEL*KQPQVQ Trigger: CTGGACCTGAGGCTGTTTTCAAAGCTCAGAGATGAG...ATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | ATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGACTATTGTGGCTTAGGCACAACTaGTGGCTTTGGGGGTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: ILAVSYPLSEDRAGRRLLWLRHN*WLWGFC Trigger: GCAAAACCCCCAAAGCCATCAGTTGTGCCTAAGCCA...CAATAGTCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | GAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGAACTTGTCTTCCTGGCTaGACACAGACACAGGTACAG | + |
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Preference number: 4 (lower is better) Translates to: EVILAVSYPLSEDRAGRRTCLPG*TQTQVQ Trigger: CTGTACCTGTGTCTGTGTCCAGCCAGGAAGACAAGT...TCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | ATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGACTATTGAGCTTTTCCAGGGGCTaGAAGTCCCGATTGCTATTG | + |
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Preference number: 4 (lower is better) Translates to: ILAVSYPLSEDRAGRRLLSFSRG*KSRLLL Trigger: CAATAGCAATCGGGACTTGCAGCCCCTGGAAAAGCT...CAATAGTCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | CTGCTTTACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATCTGGGGAGTCTTCAATaGGAGTCACGTAGTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LLYLREVILAVSYPLSEDLGSLQ*ESRSSH Trigger: ATGAGAACTACGTGACTCCCATTGAAGACTCCCCAG...ATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | ATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGACTATTGATTCATGTATTCGGCTaGTGGGGAGTCTTCAATGGG | + |
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Preference number: 4 (lower is better) Translates to: ILAVSYPLSEDRAGRRLLIHVFG*WGVFNG Trigger: CCCATTGAAGACTCCCCAGCAGCCGAATACATGAAT...CAATAGTCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR GCA 90 bp | ATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGACTATTGGCTGCAAGTCCCGATTaGTATTGTAGAAACAGATGG | + |
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Preference number: 4 (lower is better) Translates to: ILAVSYPLSEDRAGRRLLAASPD*YCRNRW Trigger: CCATCTGTTTCTACAATAGCAATCGGGACTTGCAGC...CAATAGTCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | GGTTTGGTTTTAGCTTTATTAAACAAGATCTTACTTTGTAGCACAGGCTACCGTGAGGGACTGCCTGACTaGAGAGAGACACATCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: GLVLALLNKILLCSTGYREGLPD*RETHPD Trigger: ATCAGGATGTGTCTCTCTCCAGTCAGGCAGTCCCTC...ACGGTAGCCTGTGCTACAAAGTAAGATCTTGTTTAATAAAGCTAAAACCAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | GGTTTGGTTTTAGCTTTATTAAACAAGATCTTACTTTGTAGCACAGGCTACCGTGCAGAGCCTCATCTCTaGGCTTTGAAAACAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: GLVLALLNKILLCSTGYRAEPHL*ALKTAS Trigger: TGAGGCTGTTTTCAAAGCTCAGAGATGAGGCTCTGC...ACGGTAGCCTGTGCTACAAAGTAAGATCTTGTTTAATAAAGCTAAAACCAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR TCA 90 bp | GGTTTGGTTTTAGCTTTATTAAACAAGATCTTACTTTGTAGCACAGGCTACCGTGCGTCACAAAATAGTTaGCTACAGCTTCCAGCGAGG | + |
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Preference number: 4 (lower is better) Translates to: GLVLALLNKILLCSTGYRASQNS*LQLPAR Trigger: CCTCGCTGGAAGCTGTAGTCAACTATTTTGTGACGC...ACGGTAGCCTGTGCTACAAAGTAAGATCTTGTTTAATAAAGCTAAAACCAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CCA 90 bp | GGTTTGGTTTTAGCTTTATTAAACAAGATCTTACTTTGTAGCACAGGCTACCGTAGACACAGGTACAGGTaGGAGTGGCTTCAGGACATT | + |
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Preference number: 4 (lower is better) Translates to: GLVLALLNKILLCSTGYRRHRYR*EWLQDI Trigger: AATGTCCTGAAGCCACTCCCACCTGTACCTGTGTCT...ACGGTAGCCTGTGCTACAAAGTAAGATCTTGTTTAATAAAGCTAAAACCAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 90 bp | GTCCTTGCCATCCCCGCCAGGCCGCAGAAGCAGGTTCCCGCACTCTaGGTAGCGCTCCAGGAGCAGCTGCGCCTCGAGCCTGCTCACCTG | + |
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Preference number: 5 (lower is better) Translates to: VLAIPARPQKQVPAL*VALQEQLRLEPAHL Trigger: CAGGTGAGCAGGCTCGAGGCGCAGCTGCTCCTGGAGCGCTACCCAGAGTGCGGGAACCTGCTTCTGCGGCCTGGCGGGGATGGCAAGGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS GCA 90 bp | TCCCGCACTCTGGGTAGCGCTCCAGGAGCAGCTGCGCCTCGAGCCTaGTCACCTGAAGAAAGCACCAGGGCACCTCGGCTGCCCTCCGTA | + |
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Preference number: 5 (lower is better) Translates to: SRTLGSAPGAAAPRA*SPEESTRAPRLPSV Trigger: TACGGAGGGCAGCCGAGGTGCCCTGGTGCTTTCTTCAGGTGAGCAGGCTCGAGGCGCAGCTGCTCCTGGAGCGCTACCCAGAGTGCGGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS TCA 90 bp | TACAGGTGGGAGTGGCTTCAGGACATTAGCAGGGAGGGCAGGGCCTaGGGCTCGGAAGGAGGGCACAGCCCATGCACTCTCGCCATTCTC | + |
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Preference number: 5 (lower is better) Translates to: YRWEWLQDISREGRA*GSEGGHSPCTLAIL Trigger: GAGAATGGCGAGAGTGCATGGGCTGTGCCCTCCTTCCGAGCCTCAGGCCCTGCCCTCCCTGCTAATGTCCTGAAGCCACTCCCACCTGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS GCA 90 bp | CGCCTCGAGCCTGCTCACCTGAAGAAAGCACCAGGGCACCTCGGCTaGCCTCCGTACCTCCTCTTTGGTCAGGACCTCGGCCATCATGTA | + |
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Preference number: 5 (lower is better) Translates to: RLEPAHLKKAPGHLG*PPYLLFGQDLGHHV Trigger: TACATGATGGCCGAGGTCCTGACCAAAGAGGAGGTACGGAGGGCAGCCGAGGTGCCCTGGTGCTTTCTTCAGGTGAGCAGGCTCGAGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CAA 90 bp | TACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTACAGACACACTGTCCTaGCCATCCCCGCCAGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: YLREVILAVSYPLSEDRATDTLS*PSPPGR Trigger: GCGGCCTGGCGGGGATGGCAAGGACAGTGTGTCTGT...AGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CAA 90 bp | CTGCTTTACTTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGCCTTGCCGGCTTCTaGGGCTTCAGAGGGACTGCC | + |
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Preference number: 5 (lower is better) Translates to: LLYLREVILAVSYPLSEDSLAGF*GFRGTA Trigger: GGCAGTCCCTCTGAAGCCCAAGAAGCCGGCAAGGCT...ATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAAGTAAAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 90 bp | CTCGGCCATCATGTACAGGTGTCCGGGCAGCAGGGTCAGGTTAGATaGGACACGGAGCTCTACCACAGTCAAGATAAATCCTTTCCACAT | + |
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Preference number: 5 (lower is better) Translates to: LGHHVQVSGQQGQVR*DTELYHSQDKSFPH Trigger: ATGTGGAAAGGATTTATCTTGACTGTGGTAGAGCTCCGTGTCCCATCTAACCTGACCCTGCTGCCCGGACACCTGTACATGATGGCCGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS GCA 90 bp | GACTGCCTGACTGGAGAGAGACACATCCTGATTCATGTATTCGGCTaGTGGGGAGTCTTCAATGGGAGTCACGTAGTTCTCATCCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: DCLTGERHILIHVFG*WGVFNGSHVVLIRV Trigger: GACACGGATGAGAACTACGTGACTCCCATTGAAGACTCCCCAGCAGCCGAATACATGAATCAGGATGTGTCTCTCTCCAGTCAGGCAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 90 bp | GCTTTTCCAGGGGCTGCAAGTCCCGATTGCTATTGTAGAAACAGATaGCTAAACCCTGGAGGCCTGCCCAGAACTTCCTGTAATCCTGGT | + |
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Preference number: 5 (lower is better) Translates to: AFPGAASPDCYCRNR*LNPGGLPRTSCNPG Trigger: ACCAGGATTACAGGAAGTTCTGGGCAGGCCTCCAGGGTTTAGCCATCTGTTTCTACAATAGCAATCGGGACTTGCAGCCCCTGGAAAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 90 bp | GAGACACATCCTGATTCATGTATTCGGCTGCTGGGGAGTCTTCAATaGGAGTCACGTAGTTCTCATCCGTGTCTGGTAACTGAGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: ETHPDSCIRLLGSLQ*ESRSSHPCLVTEAG Trigger: CCCTGCCTCAGTTACCAGACACGGATGAGAACTACGTGACTCCCATTGAAGACTCCCCAGCAGCCGAATACATGAATCAGGATGTGTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 90 bp | TGCCTGACTGGAGAGAGACACATCCTGATTCATGTATTCGGCTGCTaGGGAGTCTTCAATGGGAGTCACGTAGTTCTCATCCGTGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: CLTGERHILIHVFGC*GVFNGSHVVLIRVW Trigger: CCAGACACGGATGAGAACTACGTGACTCCCATTGAAGACTCCCCAGCAGCCGAATACATGAATCAGGATGTGTCTCTCTCCAGTCAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CAA 90 bp | TTGAGGGAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGATCCAGGCTCTCCACCTaGAATTTCACCTCCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: LREVILAVSYPLSEDRAGSRLST*NFTSWS Trigger: GGACCAGGAGGTGAAATTCAAGGTGGAGAGCCTGGA...TCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTCCCTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS-3UTR CAA 90 bp | GAGGTTATTTTGGCTGTGTCCTATCCCCTGAGTGAGGATAGAGCTGGAAGAAGAGCACAACTGATGGCTTaGGGGGTTTTGCTGGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: EVILAVSYPLSEDRAGRRAQLMA*GVLLGA Trigger: GGCTCCCAGCAAAACCCCCAAAGCCATCAGTTGTGC...TCTTCTTCCAGCTCTATCCTCACTCAGGGGATAGGACACAGCCAAAATAACCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | ATCCCCGCCAGGCCGCAGAAGCAGGTTCCCGCACTCTaGGTAGCGCTCCAGGAGCAGCTGCGCCTCGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: IPARPQKQVPAL*VALQEQLRLEP Trigger: AGGCTCGAGGCGCAGCTGCTCCTGGAGCGCTACCCAGAGTGCGGGAACCTGCTTCTGCGGCCTGGCGGGGAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS TCA 72 bp | CGCTCCAGGAGCAGCTGCGCCTCGAGCCTGCTCACCTaGAGAAAGCACCAGGGCACCTCGGCTGCCCTCCGT | + |
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Preference number: 6 (lower is better) Translates to: RSRSSCASSLLT*RKHQGTSAALR Trigger: ACGGAGGGCAGCCGAGGTGCCCTGGTGCTTTCTTCAGGTGAGCAGGCTCGAGGCGCAGCTGCTCCTGGAGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS GCA 72 bp | CTGGGTAGCGCTCCAGGAGCAGCTGCGCCTCGAGCCTaGTCACCTGAAGAAAGCACCAGGGCACCTCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LGSAPGAAAPRA*SPEESTRAPRL Trigger: CAGCCGAGGTGCCCTGGTGCTTTCTTCAGGTGAGCAGGCTCGAGGCGCAGCTGCTCCTGGAGCGCTACCCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | ACCAGGGCACCTCGGCTGCCCTCCGTACCTCCTCTTTaGTCAGGACCTCGGCCATCATGTACAGGTGTCCGG | + |
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Preference number: 6 (lower is better) Translates to: TRAPRLPSVPPL*SGPRPSCTGVR Trigger: CCGGACACCTGTACATGATGGCCGAGGTCCTGACCAAAGAGGAGGTACGGAGGGCAGCCGAGGTGCCCTGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CAA 72 bp | CACCAGGGCACCTCGGCTGCCCTCCGTACCTCCTCTTaGGTCAGGACCTCGGCCATCATGTACAGGTGTCCG | + |
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Preference number: 6 (lower is better) Translates to: HQGTSAALRTSS*VRTSAIMYRCP Trigger: CGGACACCTGTACATGATGGCCGAGGTCCTGACCAAAGAGGAGGTACGGAGGGCAGCCGAGGTGCCCTGGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | GCTTTGGGGGTTTTGCTGGGAGCCTTGCCGGCTTCTTaGGCTTCAGAGGGACTGCCTGACTGGAGAGAGACA | + |
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Preference number: 6 (lower is better) Translates to: ALGVLLGALPAS*ASEGLPDWRET Trigger: TGTCTCTCTCCAGTCAGGCAGTCCCTCTGAAGCCCAAGAAGCCGGCAAGGCTCCCAGCAAAACCCCCAAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | CTTGTCTTCCTGGCTGGACACAGACACAGGTACAGGTaGGAGTGGCTTCAGGACATTAGCAGGGAGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: LVFLAGHRHRYR*EWLQDISREGR Trigger: CCTGCCCTCCCTGCTAATGTCCTGAAGCCACTCCCACCTGTACCTGTGTCTGTGTCCAGCCAGGAAGACAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | GCAGGGGAGGTAGTTGAGGCAACTTGTCTTCCTGGCTaGACACAGACACAGGTACAGGTGGGAGTGGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: AGEVVEATCLPG*TQTQVQVGVAS Trigger: TGAAGCCACTCCCACCTGTACCTGTGTCTGTGTCCAGCCAGGAAGACAAGTTGCCTCAACTACCTCCCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS TCA 72 bp | GCTGGTAATGGCTTTGAGATCTGGCTTAGGCACAACTaGTGGCTTTGGGGGTTTTGCTGGGAGCCTTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: AGNGFEIWLRHN*WLWGFCWEPCR Trigger: CCGGCAAGGCTCCCAGCAAAACCCCCAAAGCCATCAGTTGTGCCTAAGCCAGATCTCAAAGCCATTACCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS GCA 72 bp | TGGGAGCCTTGCCGGCTTCTTGGGCTTCAGAGGGACTaGCTGACTGGAGAGAGACACATCCTGATTCATGTA | + |
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Preference number: 6 (lower is better) Translates to: WEPCRLLGLQRD*LTGERHILIHV Trigger: TACATGAATCAGGATGTGTCTCTCTCCAGTCAGGCAGTCCCTCTGAAGCCCAAGAAGCCGGCAAGGCTCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CAA 72 bp | CCTTTCCACATCTCACAAGACTCCAGGCTCTCCACCTaGAATTTCACCTCCTGGTCCCGGAGAACCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PFHISQDSRLST*NFTSWSRRTRL Trigger: CAGCCTGGTTCTCCGGGACCAGGAGGTGAAATTCAAGGTGGAGAGCCTGGAGTCTTGTGAGATGTGGAAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | GGGGCTGCAAGTCCCGATTGCTATTGTAGAAACAGATaGCTAAACCCTGGAGGCCTGCCCAGAACTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: GAASPDCYCRNR*LNPGGLPRTSC Trigger: ACAGGAAGTTCTGGGCAGGCCTCCAGGGTTTAGCCATCTGTTTCTACAATAGCAATCGGGACTTGCAGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | CATGTACAGGTGTCCGGGCAGCAGGGTCAGGTTAGATaGGACACGGAGCTCTACCACAGTCAAGATAAATCC | + |
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Preference number: 6 (lower is better) Translates to: HVQVSGQQGQVR*DTELYHSQDKS Trigger: GGATTTATCTTGACTGTGGTAGAGCTCCGTGTCCCATCTAACCTGACCCTGCTGCCCGGACACCTGTACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS GCA 72 bp | ACTGGAGAGAGACACATCCTGATTCATGTATTCGGCTaGTGGGGAGTCTTCAATGGGAGTCACGTAGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: TGERHILIHVFG*WGVFNGSHVVL Trigger: GAGAACTACGTGACTCCCATTGAAGACTCCCCAGCAGCCGAATACATGAATCAGGATGTGTCTCTCTCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | CCTGATTCATGTATTCGGCTGCTGGGGAGTCTTCAATaGGAGTCACGTAGTTCTCATCCGTGTCTGGTAACT | + |
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Preference number: 6 (lower is better) Translates to: PDSCIRLLGSLQ*ESRSSHPCLVT Trigger: AGTTACCAGACACGGATGAGAACTACGTGACTCCCATTGAAGACTCCCCAGCAGCCGAATACATGAATCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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| CDS CCA 72 bp | GGAGAGAGACACATCCTGATTCATGTATTCGGCTGCTaGGGAGTCTTCAATGGGAGTCACGTAGTTCTCATC | + |
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Preference number: 6 (lower is better) Translates to: GERHILIHVFGC*GVFNGSHVVLI Trigger: GATGAGAACTACGTGACTCCCATTGAAGACTCCCCAGCAGCCGAATACATGAATCAGGATGTGTCTCTCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043785.8 |
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