Pregenerated sensors for STAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029254Ensembl transcript IDs: ENSMUST00000031171.9, ENSMUST00000198435.5
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCTGGAGAGATGGCTCAGTGGTAAATACCACTGACTGCTCTTTCTaGGAACCAGGTTCATTCCCAGAATCCCAGCTCACACGTGTCTAT | + |
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Preference number: 1 (lower is better) Translates to: GWRDGSVVNTTDCSF*EPGSFPESQLTRVY Trigger: ATAGACACGTGTGAGCTGGGATTCTGGGAATGAACCTGGTTCTCAGAAAGAGCAGTCAGTGGTATTTACCACTGAGCCATCTCTCCAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR CCA 90 bp | AATATATATTCTTTTCATTGTCACATAAGTGGCCATCTTCTCCCTTaGTCACCTATAGTATTTCTTCTGAGTCCTAATCCCTTATTAGCA | + |
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Preference number: 1 (lower is better) Translates to: NIYSFHCHISGHLLP*SPIVFLLSPNPLLA Trigger: TGCTAATAAGGGATTAGGACTCAGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGAAAAGAATATATATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR TCA 72 bp | GATGGCTCAGTGGTAAATACCACTGACTGCTCTTTCTaGGAACCAGGTTCATTCCCAGAATCCCAGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: DGSVVNTTDCSF*EPGSFPESQLT Trigger: TGTGAGCTGGGATTCTGGGAATGAACCTGGTTCTCAGAAAGAGCAGTCAGTGGTATTTACCACTGAGCCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR GCA 72 bp | CTTAGTTATGCCCTGGGCTTAGATTTCTCTGTCCATTaGGGCCAGCCATGTTGTTTGACCAGCTTTGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: LSYALGLDFSVH*GQPCCLTSFAK Trigger: TTTTGCAAAGCTGGTCAAACAACATGGCTGGCCGCAATGGACAGAGAAATCTAAGCCCAGGGCATAACTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR-3UTR CAA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTCTGCTGAGCCATCTCTaGCCCCTCATTTTGTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: SLSHKWPSSPLVTYSISSLLSHL*PLILFL Trigger: TAAGAACAAAATGAGGGGCAAGAGATGGCTCAGCAG...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR-3UTR CAA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGAACTTTGTATGTGAAATaGAAGCCAAGAGGGAACAAA | + |
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Preference number: 3 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRTLYVK*KPRGNK Trigger: TTTGTTCCCTCTTGGCTTCAATTTCACATACAAAGT...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR-3UTR CAA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTTATGTGAATACACTGTaGCTCTCCAGACATACCAGA | + |
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Preference number: 3 (lower is better) Translates to: SLSHKWPSSPLVTYSISSYVNTL*LSRHTR Trigger: TCTGGTATGTCTGGAGAGCAACAGTGTATTCACATA...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR-3UTR CAA 90 bp | AAACTCTTAGTGCTCTTAACTGCTGAGCCATCTCTTGCCCCTCATTTTGTTCTTTTAGGGTTTAAGAGATaGGTAAGATTTAGGGGAACT | + |
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Preference number: 3 (lower is better) Translates to: KLLVLLTAEPSLAPHFVLLGFKR*VRFRGT Trigger: AGTTCCCCTAAATCTTACCAATCTCTTAAACCCTAA...AAGAACAAAATGAGGGGCAAGAGATGGCTCAGCAGTTAAGAGCACTAAGAGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR TCA 72 bp | TTAAAGGGAAGCTTAGAAGGTAGCTCACTAATTAGTTaGCTGGAGCTCCATACAAATATAGGGCTTAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: LKGSLEGSSLIS*LELHTNIGLRG Trigger: TCCTCTAAGCCCTATATTTGTATGGAGCTCCAGTCAACTAATTAGTGAGCTACCTTCTAAGCTTCCCTTTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR GCA 90 bp | AAACTCTTAGTGCTCTTAACTGCTGAGCCATCTCTTGCCCCTCATTTTGTTCTTTTTCCTGGAAGATCCTaGGAGGGGCAGGTTTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: KLLVLLTAEPSLAPHFVLFPGRS*EGQVSG Trigger: CCCCGAAACCTGCCCCTCGCAGGATCTTCCAGGAAA...AAGAACAAAATGAGGGGCAAGAGATGGCTCAGCAGTTAAGAGCACTAAGAGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGAATCTTCAGTCTTTCCTaGAAGATCCTGCGAGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRIFSLS*KILRGA Trigger: TGCCCCTCGCAGGATCTTCCAGGAAAGACTGAAGAT...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR TCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGAAGAAGTGACACATGCTaGGGAACTGTCAACTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRRSDTC*GTVNSV Trigger: AACAGAGTTGACAGTTCCTCAGCATGTGTCACTTCT...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGAGTTTTTCCAGCTCGATaGTGTAGTTGTTTCCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRVFPAR*CSCFQC Trigger: GCACTGGAAACAACTACACCATCGAGCTGGAAAAAC...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR GCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGACGCGTCACTTTGAAGTaGTTGATTCTTGGCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRRVTLK*LILGIS Trigger: AGAAATGCCAAGAATCAAGCACTTCAAAGTGACGCG...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| 3UTR CAA 72 bp | GGGCTTAGATTTCTCTGTCCATTGCGGCCAGCCATGTaGTTTGACCAGCTTTGCAAAAGACTTTTAAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GLRFLCPLRPAM*FDQLCKRLLRV Trigger: AACTCTTAAAAGTCTTTTGCAAAGCTGGTCAAACAACATGGCTGGCCGCAATGGACAGAGAAATCTAAGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR TCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGAACAATTCTTTTCAGTTaGATGTTGGCCAGTAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRTILFS*MLASKA Trigger: TGCCTTACTGGCCAACATTCAACTGAAAAGAATTGT...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR GCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGATTCTTTCCGGGAAACTaGATAAAAACATTCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRFFPGN*IKTFRQ Trigger: CTGCCTGAATGTTTTTATGCAGTTTCCCGGAAAGAA...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR GCA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGATTTTCTGTCTTCACATaGACTTCTTCTTTGGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRFSVFT*TSSLGK Trigger: TTTGCCCAAAGAAGAAGTGCATGTGAAGACAGAAAA...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CCA 90 bp | AAACTCTTAGTGCTCTTAACTGCTGAGCCATCTCTTGCCCCTCATTTTGTTCTTAAAACATTCAGGCAGTaGGTTCAGTACATCCGCATA | + |
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Preference number: 4 (lower is better) Translates to: KLLVLLTAEPSLAPHFVLKTFRQ*VQYIRI Trigger: TATGCGGATGTACTGAACCCACTGCCTGAATGTTTT...AAGAACAAAATGAGGGGCAAGAGATGGCTCAGCAGTTAAGAGCACTAAGAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CCA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTGAAGTGCTTGATTCTTaGCATTTCTATCTCCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: SLSHKWPSSPLVTYSISSEVLDS*HFYLLP Trigger: CGGCAGGAGATAGAAATGCCAAGAATCAAGCACTTC...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR TCA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTGGTGATCAGACCGTTTaGCCAGTAAAAATCCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: SLSHKWPSSPLVTYSISSGDQTV*PVKILQ Trigger: TTGAAGGATTTTTACTGGTCAAACGGTCTGATCACC...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CCA 90 bp | AAACTCTTAGTGCTCTTAACTGCTGAGCCATCTCTTGCCCCTCATTTTGTTCTTGACACTGAAAAGGTTTaGGAGTGTTACAGGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: KLLVLLTAEPSLAPHFVLDTEKV*ECYRFF Trigger: GAAAAACCTGTAACACTCCCAAACCTTTTCAGTGTC...AAGAACAAAATGAGGGGCAAGAGATGGCTCAGCAGTTAAGAGCACTAAGAGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CCA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTTCCTGTCTTCTATGTTaGGATCTTGACCAAAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: SLSHKWPSSPLVTYSISSSCLLC*DLDQSC Trigger: ACAACTTTGGTCAAGATCCCAACATAGAAGACAGGA...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS CCA 90 bp | AAAACATTCAGGCAGTGGGTTCAGTACATCCGCATAGTCTTGTACTaGCTCCTTCTCTTTCTCCGGAGGCATAAGAGGCAGCTGATCTGT | + |
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Preference number: 5 (lower is better) Translates to: KTFRQWVQYIRIVLY*LLLFLRRHKRQLIC Trigger: ACAGATCAGCTGCCTCTTATGCCTCCGGAGAAAGAGAAGGAGCCAGTACAAGACTATGCGGATGTACTGAACCCACTGCCTGAATGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS-3UTR CAA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGACCAGTGCGCGTCACTTaGAAGTGCTTGATTCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRPVRVT*KCLILG Trigger: GCCAAGAATCAAGCACTTCAAAGTGACGCGCACTGG...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS-3UTR CAA 90 bp | TACACCAGAGGGGCATTTCCTACTTCGTTTCATGTTTGTGACCTCCAACCTAGATTTCCAGCATTGCAGTaGCTTCTTTCCGGGAAACTG | + |
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Preference number: 5 (lower is better) Translates to: YTRGAFPTSFHVCDLQPRFPALQ*LLSGKL Trigger: CAGTTTCCCGGAAAGAAGCAACTGCAATGCTGGAAA...TCTAGGTTGGAGGTCACAAACATGAAACGAAGTAGGAAATGCCCCTCTGGTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS GCA 90 bp | AGAAGGGTTCTTTTCCAGCATTGCAGTTGCTTCTTTCCGGGAAACTaGATAAAAACATTCAGGCAGTGGGTTCAGTACATCCGCATAGTC | + |
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Preference number: 5 (lower is better) Translates to: RRVLFQHCSCFFPGN*IKTFRQWVQYIRIV Trigger: GACTATGCGGATGTACTGAACCCACTGCCTGAATGTTTTTATGCAGTTTCCCGGAAAGAAGCAACTGCAATGCTGGAAAAGAACCCTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS-3UTR CAA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTGGTTCTTTTCCAGCATaGCAGTTGCTTCTTTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: SLSHKWPSSPLVTYSISSGSFPA*QLLLSG Trigger: CCCGGAAAGAAGCAACTGCAATGCTGGAAAAGAACC...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS TCA 90 bp | ACTCCTGTCTTCTATGTTGGGATCTTGACCAAAGTTGTCATCAGCTaGATGTATAAATGGTCTCAAATTCCCTCGAGTCTCCTTCACAAA | + |
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Preference number: 5 (lower is better) Translates to: TPVFYVGILTKVVIS*MYKWSQIPSSLLHK Trigger: TTTGTGAAGGAGACTCGAGGGAATTTGAGACCATTTATACATTCAGCTGATGACAACTTTGGTCAAGATCCCAACATAGAAGACAGGAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS-3UTR CAA 90 bp | TCATTGTCACATAAGTGGCCATCTTCTCCCTTGGTCACCTATAGTATTTCTTCTACATGCACTTCTTCTTaGGGCAAAACAAGAGTGAAT | + |
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Preference number: 5 (lower is better) Translates to: SLSHKWPSSPLVTYSISSTCTSS*GKTRVN Trigger: ATTCACTCTTGTTTTGCCCAAAGAAGAAGTGCATGT...AGAAGAAATACTATAGGTGACCAAGGGAGAAGATGGCCACTTATGTGACAATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198435.5 |
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| CDS TCA 72 bp | CCAGTAAAAATCCTTCAAAGTACAGGGGCAGAGCAGTaGTCTTCAGTCTTTCCTGGAAGATCCTGCGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: PVKILQSTGAEQ*SSVFPGRSCEG Trigger: CCCCTCGCAGGATCTTCCAGGAAAGACTGAAGATCACTGCTCTGCCCCTGTACTTTGAAGGATTTTTACTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS CAA 72 bp | ACATTCAGGCAGTGGGTTCAGTACATCCGCATAGTCTaGTACTGGCTCCTTCTCTTTCTCCGGAGGCATAAG | + |
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Preference number: 6 (lower is better) Translates to: TFRQWVQYIRIV*YWLLLFLRRHK Trigger: CTTATGCCTCCGGAGAAAGAGAAGGAGCCAGTACAAGACTATGCGGATGTACTGAACCCACTGCCTGAATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS CAA 90 bp | TGCATAAAAACATTCAGGCAGTGGGTTCAGTACATCCGCATAGTCTaGTACTGGCTCCTTCTCTTTCTCCGGAGGCATAAGAGGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: CIKTFRQWVQYIRIV*YWLLLFLRRHKRQL Trigger: CAGCTGCCTCTTATGCCTCCGGAGAAAGAGAAGGAGCCAGTACAAGACTATGCGGATGTACTGAACCCACTGCCTGAATGTTTTTATGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS CCA 72 bp | GTTTCCAGTGCGCGTCACTTTGAAGTGCTTGATTCTTaGCATTTCTATCTCCTGCCGGATAGTGATGGAGTA | + |
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Preference number: 6 (lower is better) Translates to: VSSARHFEVLDS*HFYLLPDSDGV Trigger: TACTCCATCACTATCCGGCAGGAGATAGAAATGCCAAGAATCAAGCACTTCAAAGTGACGCGCACTGGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS CCA 72 bp | TTCTTTCCGGGAAACTGCATAAAAACATTCAGGCAGTaGGTTCAGTACATCCGCATAGTCTTGTACTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: FFPGNCIKTFRQ*VQYIRIVLYWL Trigger: GAGCCAGTACAAGACTATGCGGATGTACTGAACCCACTGCCTGAATGTTTTTATGCAGTTTCCCGGAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS TCA 72 bp | TCCAATAGTGTTTGTACTCCTGGTGATCAGACCGTTTaGCCAGTAAAAATCCTTCAAAGTACAGGGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SNSVCTPGDQTV*PVKILQSTGAE Trigger: CTCTGCCCCTGTACTTTGAAGGATTTTTACTGGTCAAACGGTCTGATCACCAGGAGTACAAACACTATTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS GCA 72 bp | CTTTTCCAGCATTGCAGTTGCTTCTTTCCGGGAAACTaGATAAAAACATTCAGGCAGTGGGTTCAGTACATC | + |
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Preference number: 6 (lower is better) Translates to: LFQHCSCFFPGN*IKTFRQWVQYI Trigger: GATGTACTGAACCCACTGCCTGAATGTTTTTATGCAGTTTCCCGGAAAGAAGCAACTGCAATGCTGGAAAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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| CDS TCA 72 bp | TTCTATGTTGGGATCTTGACCAAAGTTGTCATCAGCTaGATGTATAAATGGTCTCAAATTCCCTCGAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: FYVGILTKVVIS*MYKWSQIPSSL Trigger: GAGACTCGAGGGAATTTGAGACCATTTATACATTCAGCTGATGACAACTTTGGTCAAGATCCCAACATAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031171.9 ENSMUST00000198435.5 |
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