Pregenerated sensors for STAMBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006906Ensembl transcript IDs: ENSMUST00000068054.9, ENSMUST00000206400.2, ENSMUST00000206592.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGGGAATGTCGGTACACTCCTTCTACCATGTGGGTCCCAAGAACTaGGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTGTTACCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: GGMSVHSFYHVGPKN*AWAVGLGDKCCYPV Trigger: CACTGGGTAACAGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGACATTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR CCA 90 bp | TTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCATGTaGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGT | + |
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Preference number: 1 (lower is better) Translates to: LEDNLGECRYTPSTM*VPRTEPGLLGLVTS Trigger: ACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR TCA 90 bp | CACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCGTGGGTCCCAAGAACTaGGCCTGGGCTGTTGGGCTT | + |
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Preference number: 2 (lower is better) Translates to: HMWRLEDNLGECRYTPSTVGPKN*AWAVGL Trigger: AAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCAC...GGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR TCA 90 bp | CACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCAGTGCTGTTACCCAGTaGTCCATCTCCCTGGTTCAT | + |
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Preference number: 2 (lower is better) Translates to: HMWRLEDNLGECRYTPSTSAVTQ*SISLVH Trigger: ATGAACCAGGGAGATGGATCACTGGGTAACAGCACT...GGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR GCA 90 bp | CACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGGGCTTGGTGACAAGTaGTGTTACCCAGTGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: HTYHSTHVEVRGQLGGMSGLGDK*CYPVIH Trigger: ATGGATCACTGGGTAACAGCACTTGTCACCAAGCCC...CGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR CAA 90 bp | AACAACAACAACAACAACAACAACAACAACAGTCTCCCCTTAGTGTaGACCCTTTCCTATCCTGTCTTAAAAGCTTACTCAACTCCATGG | + |
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Preference number: 2 (lower is better) Translates to: NNNNNNNNNNSLPLV*TLSYPVLKAYSTPW Trigger: CCATGGAGTTGAGTAAGCTTTTAAGACAGGATAGGAAAGGGTCAACACTAAGGGGAGACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
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| 3UTR-3UTR GCA 90 bp | AGTATTTTCTCTTGCATCCTAATTTTTGAGTTAGTTGCTTGGTGTGATTTGGTCGGGCTTGGTGACAAGTaGTGTTACCCAGTGATCCAT | + |
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Preference number: 2 (lower is better) Translates to: SIFSCILIFELVAWCDLVGLGDK*CYPVIH Trigger: ATGGATCACTGGGTAACAGCACTTGTCACCAAGCCC...GACCAAATCACACCAAGCAACTAACTCAAAAATTAGGATGCAAGAGAAAATACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGTAAATTTCAAGAGGAACAGAAGGCCAGTGTTTGGATCTAGAGAAGTATTTTTTGAGTTAGTTGCTTaGTGTGATTTGGTCATTTTC | + |
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Preference number: 2 (lower is better) Translates to: EVNFKRNRRPVFGSREVFFELVA*CDLVIF Trigger: GAAAATGACCAAATCACACCAAGCAACTAACTCAAA...AAATACTTCTCTAGATCCAAACACTGGCCTTCTGTTCCTCTTGAAATTTACCTC 37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
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| 3UTR TCA 72 bp | GGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTaGCAAGTGCTGTTACCCAGTGATCCATCTCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: GSQELSLGCWAW*QVLLPSDPSPW Trigger: CCAGGGAGATGGATCACTGGGTAACAGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR TCA 72 bp | TCGGTACACTCCTTCTACCATGTGGGTCCCAAGAACTaGGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: SVHSFYHVGPKN*AWAVGLGDKCC Trigger: ACAGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR CCA 72 bp | AACTTGGGGGAATGTCGGTACACTCCTTCTACCATGTaGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTG | + |
|
Preference number: 3 (lower is better) Translates to: NLGECRYTPSTM*VPRTEPGLLGL Trigger: CAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGACATTCCCCCAAGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR CAA 90 bp | ACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGCCTGGGCTGTTGGGCTaGGTGACAAGTGCTGTTACC | + |
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Preference number: 3 (lower is better) Translates to: THTTAHMWRLEDNLGECRPGLLG*VTSAVT Trigger: GGTAACAGCACTTGTCACCAAGCCCAACAGCCCAGG...CCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR CAA 90 bp | CATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACCCTGGGCTGTTGGGCTaGGTGACAAGTGCTGTTACC | + |
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Preference number: 3 (lower is better) Translates to: HTTAHMWRLEDNLGECRYPGLLG*VTSAVT Trigger: GGTAACAGCACTTGTCACCAAGCCCAACAGCCCAGG...GTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR CAA 90 bp | CACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCACTGAGCCTGGGCTGTaGGGCTTGGTGACAAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: HMWRLEDNLGECRYTPSTTEPGL*GLVTSA Trigger: AGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGT...GGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR CAA 90 bp | CATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCATCCTGGGCTGTTGGGCTaGGTGACAAGTGCTGTTACC | + |
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Preference number: 3 (lower is better) Translates to: HVEVRGQLGGMSVHSFYHPGLLG*VTSAVT Trigger: GGTAACAGCACTTGTCACCAAGCCCAACAGCCCAGG...ATGGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR CCA 72 bp | CACACACGTGAGAACACACATACCACAGCACACATGTaGAGGTTAGAGGACAACTTGGGGGAATGTCGGTAC | + |
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Preference number: 3 (lower is better) Translates to: HTRENTHTTAHM*RLEDNLGECRY Trigger: GTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTCTCACGTGTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGTAAATTTCAAGAGGAACAGAAGGCCAGTGTTTGGATCTAGAGAAGTATTTAGTCTCCCCTTAGTGTaGACCCTTTCCTATCCTGTC | + |
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Preference number: 3 (lower is better) Translates to: EVNFKRNRRPVFGSREVFSLPLV*TLSYPV Trigger: GACAGGATAGGAAAGGGTCAACACTAAGGGGAGACT...AAATACTTCTCTAGATCCAAACACTGGCCTTCTGTTCCTCTTGAAATTTACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
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| CDS-3UTR CCA 90 bp | ACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGATCCTCACCCGGTCTTaGGGTGGGAGGCTCACATCC | + |
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Preference number: 4 (lower is better) Translates to: TPSTMWVPRTEPGLLGLVILTRS*GGRLTS Trigger: GGATGTGAGCCTCCCACCCCAAGACCGGGTGAGGAT...CACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTAGTCTGGAGTCTGCGTaGGCGAGAACGGTGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TMWVPRTEPGLLGLVTSASLESA*ARTVSW Trigger: CCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACT...AGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TGTCGGTACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGATCCTCACCCGGTCTTaGGGTGGGAGGCTCACATCC | + |
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Preference number: 4 (lower is better) Translates to: CRYTPSTMWVPRTEPGLLILTRS*GGRLTS Trigger: GGATGTGAGCCTCCCACCCCAAGACCGGGTGAGGAT...CAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGAGTCTGGAGTCTGCGTaGGCGAGAACGGTGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: YTPSTMWVPRTEPGLLGLSLESA*ARTVSW Trigger: CCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACT...CAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTCCTGTCCACCACAGGTaGCTTAGCTGGCCTCATGCC | + |
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Preference number: 4 (lower is better) Translates to: STMWVPRTEPGLLGLVTSPVHHR*LSWPHA Trigger: GGCATGAGGCCAGCTAAGCCACCTGTGGTGGACAGG...ACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR TCA 90 bp | GGTACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTGGATCCAGCCAAGAGTaGGGAGTCCAAGGTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: GTLLLPCGSQELSLGCWAGSSQE*GVQGHP Trigger: AGGATGACCTTGGACTCCTCACTCTTGGCTGGATCC...AGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGCCTGTCCACCACAGGTaGCTTAGCTGGCCTCATGCC | + |
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Preference number: 4 (lower is better) Translates to: THTTAHMWRLEDNLGECRPVHHR*LSWPHA Trigger: GGCATGAGGCCAGCTAAGCCACCTGTGGTGGACAGG...CCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | CACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCCCTGTCCACCACAGGTaGCTTAGCTGGCCTCATGCC | + |
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Preference number: 4 (lower is better) Translates to: HMWRLEDNLGECRYTPSTPVHHR*LSWPHA Trigger: GGCATGAGGCCAGCTAAGCCACCTGTGGTGGACAGG...GGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACATCCTCACCCGGTCTTaGGGTGGGAGGCTCACATCC | + |
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Preference number: 4 (lower is better) Translates to: THVEVRGQLGGMSVHSFYILTRS*GGRLTS Trigger: GGATGTGAGCCTCCCACCCCAAGACCGGGTGAGGAT...GTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TGTCGGTACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGTCCAGCTCCTGCCTCTaGATCATCTCCTCAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: CRYTPSTMWVPRTEPGLLSSSCL*IISSKA Trigger: TGCCTTTGAGGAGATGATCCAGAGGCAGGAGCTGGA...CAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGTCCAGCTCCTGCCTCTaGATCATCTCCTCAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: YTPSTMWVPRTEPGLLGLSSSCL*IISSKA Trigger: TGCCTTTGAGGAGATGATCCAGAGGCAGGAGCTGGA...CAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | CACACACGTGAGAACACACATACCACAGCACACATGTGGAGGTTAGAGGACAACAGTCTGGAGTCTGCGTaGGCGAGAACGGTGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: HTRENTHTTAHMWRLEDNSLESA*ARTVSW Trigger: CCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACT...GTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTCTCACGTGTGTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGATCTCCTCAAAGGCATaGAATTGCTCCTGCTCTAGC | + |
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Preference number: 4 (lower is better) Translates to: TPSTMWVPRTEPGLLGLVISSKA*NCSCSS Trigger: GCTAGAGCAGGAGCAATTCCATGCCTTTGAGGAGAT...CACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TGTCGGTACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGTCCTTGACAGTGACATaGCTGCAGTCACAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: CRYTPSTMWVPRTEPGLLSLTVT*LQSQNS Trigger: GCTGTTCTGTGACTGCAGCCATGTCACTGTCAAGGA...CAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTGTTCCAACTCTTGCTGGATaGCGATATTTCGGGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: MWVPRTEPGLLGLVTSAVPTLAG*RYFGQV Trigger: AACTTGCCCGAAATATCGCCATCCAGCAAGAGTTGG...AACAGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTCCAGCTCCTGCCTCTaGATCATCTCCTCAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: THTTAHMWRLEDNLGECRSSSCL*IISSKA Trigger: TGCCTTTGAGGAGATGATCCAGAGGCAGGAGCTGGA...CCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | ACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTAAGAATCCAGTTTCCTaGAACTTTGGGGAACAGACG | + |
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Preference number: 4 (lower is better) Translates to: TMWVPRTEPGLLGLVTSAKNPVS*NFGEQT Trigger: CGTCTGTTCCCCAAAGTTCCAGGAAACTGGATTCTT...AGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | GTCGGTACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGAAGAATCCAGTTTCCTaGAACTTTGGGGAACAGACG | + |
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Preference number: 4 (lower is better) Translates to: VGTLLLPCGSQELSLGCWKNPVS*NFGEQT Trigger: CGTCTGTTCCCCAAAGTTCCAGGAAACTGGATTCTT...CCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACCGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR GCA 90 bp | TCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTAGGCATGTTCAATGTTaGCTTCTTCCGAGTAAACGG | + |
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Preference number: 4 (lower is better) Translates to: STMWVPRTEPGLLGLVTSRHVQC*LLPSKR Trigger: CCGTTTACTCGGAAGAAGGCAACATTGAACATGCCT...ACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | TCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTAGTTTCCTGGAACTTTaGGGAACAGACGATTGCGAT | + |
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Preference number: 4 (lower is better) Translates to: STMWVPRTEPGLLGLVTSSFLEL*GTDDCD Trigger: ATCGCAATCGTCTGTTCCCCAAAGTTCCAGGAAACT...ACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | CACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCTCCTTGACAGTGACATaGCTGCAGTCACAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: HMWRLEDNLGECRYTPSTSLTVT*LQSQNS Trigger: GCTGTTCTGTGACTGCAGCCATGTCACTGTCAAGGA...GGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | CATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACTCCTTGACAGTGACATaGCTGCAGTCACAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: HTTAHMWRLEDNLGECRYSLTVT*LQSQNS Trigger: GCTGTTCTGTGACTGCAGCCATGTCACTGTCAAGGA...GTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR GCA 90 bp | CACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGTCTTTTTCCAGCTCCTaGCTCTGGATCATCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: HTYHSTHVEVRGQLGGMSSFSSS*LWIISS Trigger: TGAGGAGATGATCCAGAGGCAGGAGCTGGAAAAAGA...CGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR GCA 90 bp | CATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACTCTTTTTCCAGCTCCTaGCTCTGGATCATCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: HTTAHMWRLEDNLGECRYSFSSS*LWIISS Trigger: TGAGGAGATGATCCAGAGGCAGGAGCTGGAAAAAGA...GTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | GCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTCCAACTCTTGCTGGATaGCGATATTTCGGGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: AHMWRLEDNLGECRYTPSPTLAG*RYFGQV Trigger: AACTTGCCCGAAATATCGCCATCCAGCAAGAGTTGG...AGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS-3UTR CCA 90 bp | CACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGATCTCCTCAAAGGCATaGAATTGCTCCTGCTCTAGC | + |
|
Preference number: 4 (lower is better) Translates to: HTYHSTHVEVRGQLGGMSISSKA*NCSCSS Trigger: GCTAGAGCAGGAGCAATTCCATGCCTTTGAGGAGAT...CGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR TCA 90 bp | ACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGACCTTCCCGAACTCTTaGACAATTTTCAGCCGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: THTTAHMWRLEDNLGECRTFPNS*TIFSRS Trigger: AGAACGGCTGAAAATTGTTCAAGAGTTCGGGAAGGT...CCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR TCA 90 bp | CATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACCTTCCCGAACTCTTaGACAATTTTCAGCCGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HTTAHMWRLEDNLGECRYTFPNS*TIFSRS Trigger: AGAACGGCTGAAAATTGTTCAAGAGTTCGGGAAGGT...GTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CCA 90 bp | CACACACGTGAGAACACACATACCACAGCACACATGTGGAGGTTAGAGGACAACCCAACTCTTGCTGGATaGCGATATTTCGGGCAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: HTRENTHTTAHMWRLEDNPTLAG*RYFGQV Trigger: AACTTGCCCGAAATATCGCCATCCAGCAAGAGTTGG...GTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTCTCACGTGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CCA 90 bp | GAACACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGATCTCCTCAAAGGCATaGAATTGCTCCTGCTCTAGC | + |
|
Preference number: 4 (lower is better) Translates to: EHTYHSTHVEVRGQLGGMISSKA*NCSCSS Trigger: GCTAGAGCAGGAGCAATTCCATGCCTTTGAGGAGAT...CATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CCA 90 bp | CACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGAAGAATCCAGTTTCCTaGAACTTTGGGGAACAGACG | + |
|
Preference number: 4 (lower is better) Translates to: HTYHSTHVEVRGQLGGMSKNPVS*NFGEQT Trigger: CGTCTGTTCCCCAAAGTTCCAGGAAACTGGATTCTT...CGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR TCA 90 bp | GAACACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGACCTTCCCGAACTCTTaGACAATTTTCAGCCGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: EHTYHSTHVEVRGQLGGMTFPNS*TIFSRS Trigger: AGAACGGCTGAAAATTGTTCAAGAGTTCGGGAAGGT...CATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR GCA 90 bp | ATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCATGAGGCATGTTCAATGTTaGCTTCTTCCGAGTAAACGG | + |
|
Preference number: 4 (lower is better) Translates to: MWRLEDNLGECRYTPSTMRHVQC*LLPSKR Trigger: CCGTTTACTCGGAAGAAGGCAACATTGAACATGCCT...CATGGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR GCA 90 bp | ACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTAGTCCAAGGTCATCCTaGATAAAGAAAATTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TMWVPRTEPGLLGLVTSASPRSS*IKKISS Trigger: AGAAGAAATTTTCTTTATGCAGGATGACCTTGGACT...AGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CCA 90 bp | ATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTGTTACTGCTCATATTCTTTaGTGTATCTTCTCAAGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: MWVPRTEPGLLGLVTSAVTAHIL*CIFSRA Trigger: AGCTCTTGAGAAGATACACCAAAGAATATGAGCAGT...AACAGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CCA 90 bp | GAACACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGAGTTTCCTGGAACTTTaGGGAACAGACGATTGCGAT | + |
|
Preference number: 4 (lower is better) Translates to: EHTYHSTHVEVRGQLGGMSFLEL*GTDDCD Trigger: ATCGCAATCGTCTGTTCCCCAAAGTTCCAGGAAACT...CATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR TCA 90 bp | AACAACAACAACAACAGTCTCCCCTTAGTGTTGACCCTTTCCTATCCTGTCTTAAAGCTGGAGAAATTCTaGGCACAGATTACGGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: NNNNNSLPLVLTLSYPVLKLEKF*AQITGH Trigger: GTGCCCCGTAATCTGTGCTCAGAATTTCTCCAGCTT...TAAGACAGGATAGGAAAGGGTCAACACTAAGGGGAGACTGTTGTTGTTGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
||
| CDS-3UTR CCA 90 bp | CACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGACTGCTCATATTCTTTaGTGTATCTTCTCAAGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: HTYHSTHVEVRGQLGGMSTAHIL*CIFSRA Trigger: AGCTCTTGAGAAGATACACCAAAGAATATGAGCAGT...CGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR GCA 90 bp | CACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCAGTCCAAGGTCATCCTaGATAAAGAAAATTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HMWRLEDNLGECRYTPSTSPRSS*IKKISS Trigger: AGAAGAAATTTTCTTTATGCAGGATGACCTTGGACT...GGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR GCA 90 bp | CATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACAGTCCAAGGTCATCCTaGATAAAGAAAATTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HTTAHMWRLEDNLGECRYSPRSS*IKKISS Trigger: AGAAGAAATTTTCTTTATGCAGGATGACCTTGGACT...GTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| 3UTR CAA 72 bp | ATGCCCCTATTTAGTCCAAAGGCAGAGATGAACAAGTaGGGAGGTAAATTTCAAGAGGAACAGAAGGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: MPLFSPKAEMNK*GGKFQEEQKAS Trigger: ACTGGCCTTCTGTTCCTCTTGAAATTTACCTCCCAACTTGTTCATCTCTGCCTTTGGACTAAATAGGGGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
||
| CDS-3UTR TCA 90 bp | GAGGTAAATTTCAAGAGGAACAGAAGGCCAGTGTTTGGATCTAGAGAAGTATTTAAGCTGGAGAAATTCTaGGCACAGATTACGGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: EVNFKRNRRPVFGSREVFKLEKF*AQITGH Trigger: GTGCCCCGTAATCTGTGCTCAGAATTTCTCCAGCTT...AAATACTTCTCTAGATCCAAACACTGGCCTTCTGTTCCTCTTGAAATTTACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
||
| CDS-3UTR TCA 90 bp | AGTATTTTCTCTTGCATCCTAATTTTTGAGTTAGTTGCTTGGTGTGATTTGGTCGGATCCAGCCAAGAGTaGGGAGTCCAAGGTCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: SIFSCILIFELVAWCDLVGSSQE*GVQGHP Trigger: AGGATGACCTTGGACTCCTCACTCTTGGCTGGATCC...GACCAAATCACACCAAGCAACTAACTCAAAAATTAGGATGCAAGAGAAAATACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
||
| CDS-3UTR GCA 90 bp | GAGGTAAATTTCAAGAGGAACAGAAGGCCAGTGTTTGGATCTAGAGAAGTATTTAGGCATGTTCAATGTTaGCTTCTTCCGAGTAAACGG | + |
|
Preference number: 4 (lower is better) Translates to: EVNFKRNRRPVFGSREVFRHVQC*LLPSKR Trigger: CCGTTTACTCGGAAGAAGGCAACATTGAACATGCCT...AAATACTTCTCTAGATCCAAACACTGGCCTTCTGTTCCTCTTGAAATTTACCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
||
| CDS-3UTR CCA 90 bp | GAGGTAAATTTCAAGAGGAACAGAAGGCCAGTGTTTGGATCTAGAGAAGTATTTAGTTTCCTGGAACTTTaGGGAACAGACGATTGCGAT | + |
|
Preference number: 4 (lower is better) Translates to: EVNFKRNRRPVFGSREVFSFLEL*GTDDCD Trigger: ATCGCAATCGTCTGTTCCCCAAAGTTCCAGGAAACT...AAATACTTCTCTAGATCCAAACACTGGCCTTCTGTTCCTCTTGAAATTTACCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 |
||
| CDS TCA 90 bp | CCTCATGCCTGTGTTACAGTCTGGAGTCTGCGTGGGCGAGAACGGTaGGCTGGGGGCCACATCTACACAAGGCTTTTCCAGATCAGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: PHACVTVWSLRGRER*AGGHIYTRLFQIRE Trigger: CTCCCTGATCTGGAAAAGCCTTGTGTAGATGTGGCCCCCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACTGTAACACAGGCATGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS CCA 90 bp | TGCCTGTGTTACAGTCTGGAGTCTGCGTGGGCGAGAACGGTGAGCTaGGGGCCACATCTACACAAGGCTTTTCCAGATCAGGGAGCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: CLCYSLESAWARTVS*GPHLHKAFPDQGAE Trigger: CTCTGCTCCCTGATCTGGAAAAGCCTTGTGTAGATGTGGCCCCCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACTGTAACACAGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | TCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTAATCCTCACCCGGTCTaGGGGTGGGAGGCTCACATC | + |
|
Preference number: 5 (lower is better) Translates to: STMWVPRTEPGLLGLVTSNPHPV*GWEAHI Trigger: GATGTGAGCCTCCCACCCCAAGACCGGGTGAGGATT...ACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS TCA 90 bp | GCACCACGATGTGGCGCAGGCCTTCAATGGTGGGAACATTTTCTATaGCGCTTAACGCTCCAGGTTTCAGGGACCTGTCCACCACAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: APRCGAGLQWWEHFL*RLTLQVSGTCPPQV Trigger: CACCTGTGGTGGACAGGTCCCTGAAACCTGGAGCGTTAAGCGTCATAGAAAATGTTCCCACCATTGAAGGCCTGCGCCACATCGTGGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS CCA 90 bp | CGACGGGGTGGAATGTCTTCATTTAACTCAACTGCACTCCCAAGTTaGGACAGAATCCTCACCCGGTCTTGGGGTGGGAGGCTCACATCC | + |
|
Preference number: 5 (lower is better) Translates to: RRGGMSSFNSTALPS*DRILTRSWGGRLTS Trigger: GGATGTGAGCCTCCCACCCCAAGACCGGGTGAGGATTCTGTCCCAACTTGGGAGTGCAGTTGAGTTAAATGAAGACATTCCACCCCGTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGAATCCTCACCCGGTCTaGGGGTGGGAGGCTCACATC | + |
|
Preference number: 5 (lower is better) Translates to: THTTAHMWRLEDNLGECRNPHPV*GWEAHI Trigger: GATGTGAGCCTCCCACCCCAAGACCGGGTGAGGATT...CCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS CCA 90 bp | ACTCCACAGGTTTCAATGCCTTTGGCGGTATTGGCACTGGCAAGCTaGAGAAATTCTGAGCACAGATTACGGGGCACCACGATGTGGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TPQVSMPLAVLALAS*RNSEHRLRGTTMWR Trigger: GCGCCACATCGTGGTGCCCCGTAATCTGTGCTCAGAATTTCTCCAGCTTGCCAGTGCCAATACCGCCAAAGGCATTGAAACCTGTGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCATAATCCTCACCCGGTCTaGGGGTGGGAGGCTCACATC | + |
|
Preference number: 5 (lower is better) Translates to: HVEVRGQLGGMSVHSFYHNPHPV*GWEAHI Trigger: GATGTGAGCCTCCCACCCCAAGACCGGGTGAGGATT...ATGGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGGTCACAATTCTGTCCTaGACAGTGACATGGCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: TPSTMWVPRTEPGLLGLVVTILS*TVTWLQ Trigger: CTGCAGCCATGTCACTGTCAAGGACAGAATTGTGAC...CACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS TCA 90 bp | CATGTTCAATGTTGCCTTCTTCCGAGTAAACGGACGCCATGCGGATaGTCTCAACACCGGAGCGGTAGTAGCGACGGGGTGGAATGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: HVQCCLLPSKRTPCG*SQHRSGSSDGVECL Trigger: AAGACATTCCACCCCGTCGCTACTACCGCTCCGGTGTTGAGATCATCCGCATGGCGTCCGTTTACTCGGAAGAAGGCAACATTGAACATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS TCA 90 bp | TTCAATGCCTTTGGCGGTATTGGCACTGGCAAGCTGGAGAAATTCTaGGCACAGATTACGGGGCACCACGATGTGGCGCAGGCCTTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: FNAFGGIGTGKLEKF*AQITGHHDVAQAFN Trigger: ATTGAAGGCCTGCGCCACATCGTGGTGCCCCGTAATCTGTGCTCAGAATTTCTCCAGCTTGCCAGTGCCAATACCGCCAAAGGCATTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | GGTACACTCCTTCTACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTCTTTCTGCCGGCAGGTaGAAATCTCTTGAAGACCAT | + |
|
Preference number: 5 (lower is better) Translates to: GTLLLPCGSQELSLGCWALSAGR*KSLEDH Trigger: ATGGTCTTCAAGAGATTTCAACCTGCCGGCAGAAAG...AGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGTAGAAGGAGTGTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTCTTTCTGCCGGCAGGTaGAAATCTCTTGAAGACCAT | + |
|
Preference number: 5 (lower is better) Translates to: TMWVPRTEPGLLGLVTSALSAGR*KSLEDH Trigger: ATGGTCTTCAAGAGATTTCAACCTGCCGGCAGAAAG...AGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTGTTGTCACAATTCTGTCCTaGACAGTGACATGGCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: MWVPRTEPGLLGLVTSAVVTILS*TVTWLQ Trigger: CTGCAGCCATGTCACTGTCAAGGACAGAATTGTGAC...AACAGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ACCATGTGGGTCCCAAGAACTGAGCCTGGGCTGTTGGGCTTGGTGACAAGTGCTTACCTTCCCGAACTCTaGAACAATTTTCAGCCGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TMWVPRTEPGLLGLVTSAYLPEL*NNFQPF Trigger: GAACGGCTGAAAATTGTTCAAGAGTTCGGGAAGGTA...AGCACTTGTCACCAAGCCCAACAGCCCAGGCTCAGTTCTTGGGACCCACATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | CACACACGTGAGAACACACATACCACAGCACACATGTGGAGGTTAGAGGACAACGTCACAATTCTGTCCTaGACAGTGACATGGCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: HTRENTHTTAHMWRLEDNVTILS*TVTWLQ Trigger: CTGCAGCCATGTCACTGTCAAGGACAGAATTGTGAC...GTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGTGTTCTCACGTGTGTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ACACATACCACAGCACACATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACCTTCCCGAACTCTaGAACAATTTTCAGCCGTTC | + |
|
Preference number: 5 (lower is better) Translates to: THTTAHMWRLEDNLGECRYLPEL*NNFQPF Trigger: GAACGGCTGAAAATTGTTCAAGAGTTCGGGAAGGTA...CCGACATTCCCCCAAGTTGTCCTCTAACCTCCACATGTGTGCTGTGGTATGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS-3UTR CAA 90 bp | ATGTGGAGGTTAGAGGACAACTTGGGGGAATGTCGGTACACTCCTTCTACCATGCTTTCTGCCGGCAGGTaGAAATCTCTTGAAGACCAT | + |
|
Preference number: 5 (lower is better) Translates to: MWRLEDNLGECRYTPSTMLSAGR*KSLEDH Trigger: ATGGTCTTCAAGAGATTTCAACCTGCCGGCAGAAAG...CATGGTAGAAGGAGTGTACCGACATTCCCCCAAGTTGTCCTCTAACCTCCACAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS CCA 72 bp | CTGGCCTCATGCCTGTGTTACAGTCTGGAGTCTGCGTaGGCGAGAACGGTGAGCTGGGGGCCACATCTACAC | + |
|
Preference number: 6 (lower is better) Translates to: LASCLCYSLESA*ARTVSWGPHLH Trigger: GTGTAGATGTGGCCCCCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACTGTAACACAGGCATGAGGCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS GCA 72 bp | TTAGCTGGCCTCATGCCTGTGTTACAGTCTGGAGTCTaGGTGGGCGAGAACGGTGAGCTGGGGGCCACATCT | + |
|
Preference number: 6 (lower is better) Translates to: LAGLMPVLQSGV*VGENGELGATS Trigger: AGATGTGGCCCCCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACTGTAACACAGGCATGAGGCCAGCTAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS CCA 72 bp | CTTGACAGTGACATGGCTGCAGTCACAGAACAGCGGTaGGTCTCTGCCATGGGGGTGAAAGCCTTTCTGCCG | + |
|
Preference number: 6 (lower is better) Translates to: LDSDMAAVTEQR*VSAMGVKAFLP Trigger: CGGCAGAAAGGCTTTCACCCCCATGGCAGAGACCCACCGCTGTTCTGTGACTGCAGCCATGTCACTGTCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
||
| CDS TCA 72 bp | TGTGTTACAGTCTGGAGTCTGCGTGGGCGAGAACGGTaGGCTGGGGGCCACATCTACACAAGGCTTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: CVTVWSLRGRER*AGGHIYTRLFQ Trigger: CTGGAAAAGCCTTGTGTAGATGTGGCCCCCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACTGTAACACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | TACAGTCTGGAGTCTGCGTGGGCGAGAACGGTGAGCTaGGGGCCACATCTACACAAGGCTTTTCCAGATCAG | + |
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Preference number: 6 (lower is better) Translates to: YSLESAWARTVS*GPHLHKAFPDQ Trigger: CTGATCTGGAAAAGCCTTGTGTAGATGTGGCCCCCAGCTCACCGTTCTCGCCCACGCAGACTCCAGACTGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | AGGTTTCAGGGACCTGTCCACCACAGGTGGCTTAGCTaGCCTCATGCCTGTGTTACAGTCTGGAGTCTGCGT | + |
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Preference number: 6 (lower is better) Translates to: RFQGPVHHRWLS*PHACVTVWSLR Trigger: ACGCAGACTCCAGACTGTAACACAGGCATGAGGCCAGCTAAGCCACCTGTGGTGGACAGGTCCCTGAAACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS TCA 72 bp | TTTGGCGGTATTGGCACTGGCAAGCTGGAGAAATTCTaGGCACAGATTACGGGGCACCACGATGTGGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: FGGIGTGKLEKF*AQITGHHDVAQ Trigger: CTGCGCCACATCGTGGTGCCCCGTAATCTGTGCTCAGAATTTCTCCAGCTTGCCAGTGCCAATACCGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS TCA 72 bp | TGTGGCGCAGGCCTTCAATGGTGGGAACATTTTCTATaGCGCTTAACGCTCCAGGTTTCAGGGACCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: CGAGLQWWEHFL*RLTLQVSGTCP Trigger: TGGACAGGTCCCTGAAACCTGGAGCGTTAAGCGTCATAGAAAATGTTCCCACCATTGAAGGCCTGCGCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS TCA 72 bp | AGATCCACACTGGACAGAAAGGCCGTTTGGGTTGGATaGGTATGGATCCAGCCAAGAGTGAGGAGTCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: RSTLDRKAVWVG*VWIQPRVRSPR Trigger: CCTTGGACTCCTCACTCTTGGCTGGATCCATACTCATCCAACCCAAACGGCCTTTCTGTCCAGTGTGGATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | GGAATGTCTTCATTTAACTCAACTGCACTCCCAAGTTaGGACAGAATCCTCACCCGGTCTTGGGGTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: GMSSFNSTALPS*DRILTRSWGGR Trigger: CCTCCCACCCCAAGACCGGGTGAGGATTCTGTCCCAACTTGGGAGTGCAGTTGAGTTAAATGAAGACATTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | TCTGTGATCGTCACAATTCTGTCCTTGACAGTGACATaGCTGCAGTCACAGAACAGCGGTGGGTCTCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SVIVTILSLTVT*LQSQNSGGSLP Trigger: TGGCAGAGACCCACCGCTGTTCTGTGACTGCAGCCATGTCACTGTCAAGGACAGAATTGTGACGATCACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CAA 72 bp | CAGAGGACTCCACAGGTTTCAATGCCTTTGGCGGTATaGGCACTGGCAAGCTGGAGAAATTCTGAGCACAGA | + |
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Preference number: 6 (lower is better) Translates to: QRTPQVSMPLAV*ALASWRNSEHR Trigger: TCTGTGCTCAGAATTTCTCCAGCTTGCCAGTGCCAATACCGCCAAAGGCATTGAAACCTGTGGAGTCCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | AGAGGACTCCACAGGTTTCAATGCCTTTGGCGGTATTaGCACTGGCAAGCTGGAGAAATTCTGAGCACAGAT | + |
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Preference number: 6 (lower is better) Translates to: RGLHRFQCLWRY*HWQAGEILSTD Trigger: ATCTGTGCTCAGAATTTCTCCAGCTTGCCAGTGCCAATACCGCCAAAGGCATTGAAACCTGTGGAGTCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | ACAATTTTCAGCCGTTCTTTTTCCAGCTCCTGCCTCTaGATCATCTCCTCAAAGGCATGGAATTGCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: TIFSRSFSSSCL*IISSKAWNCSC Trigger: GCAGGAGCAATTCCATGCCTTTGAGGAGATGATCCAGAGGCAGGAGCTGGAAAAAGAACGGCTGAAAATTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CCA 72 bp | CAGTTTCCTGGAACTTTGGGGAACAGACGATTGCGATaGACTCTGGTAACATCATTTGGTAGGAGCAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: QFPGTLGNRRLR*TLVTSFGRSSE Trigger: CTCACTGCTCCTACCAAATGATGTTACCAGAGTCCATCGCAATCGTCTGTTCCCCAAAGTTCCAGGAAACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CAA 72 bp | AGAATCCAGTTTCCTGGAACTTTGGGGAACAGACGATaGCGATGGACTCTGGTAACATCATTTGGTAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RIQFPGTLGNRR*RWTLVTSFGRS Trigger: GCTCCTACCAAATGATGTTACCAGAGTCCATCGCAATCGTCTGTTCCCCAAAGTTCCAGGAAACTGGATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS GCA 72 bp | TGGATCCAGCCAAGAGTGAGGAGTCCAAGGTCATCCTaGATAAAGAAAATTTCTTCTTCATTCTCCGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: WIQPRVRSPRSS*IKKISSSFSVW Trigger: CCACACGGAGAATGAAGAAGAAATTTTCTTTATGCAGGATGACCTTGGACTCCTCACTCTTGGCTGGATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CAA 90 bp | CTTCTGCTTCTGCTGAGCAACCCTCTGTTTTTCTTTTTCCAACTCTaGCTGGATGGCGATATTTCGGGCAAGTTCCTCTTCTTCCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: LLLLLSNPLFFFFQL*LDGDISGKFLFFLF Trigger: AAAAAGGAAGAAGAGGAACTTGCCCGAAATATCGCCATCCAGCAAGAGTTGGAAAAAGAAAAACAGAGGGTTGCTCAGCAGAAGCAGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CAA 90 bp | AATTTCTTCTTCATTCTCCGTGTGGCAATAATCAGGCCCACCATTTaGTCTGGGGATGAGAACATGTGTGATTGTGAATTCATTTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: NFFFILRVAIIRPTI*SGDENMCDCEFISH Trigger: ATGAGAAATGAATTCACAATCACACATGTTCTCATCCCCAGACAAAATGGTGGGCCTGATTATTGCCACACGGAGAATGAAGAAGAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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| CDS CAA 72 bp | TCCTTTTTCTTTCGCTCTTTATACTGCTCATATTCTTaGGTGTATCTTCTCAAGAGCTCTGTCTTCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: SFFFRSLYCSYS*VYLLKSSVFSS Trigger: AGAGCTGAAGACAGAGCTCTTGAGAAGATACACCAAAGAATATGAGCAGTATAAAGAGCGAAAGAAAAAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000068054.9 ENSMUST00000206400.2 ENSMUST00000206592.2 |
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