RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for STAM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026718

Ensembl transcript IDs: ENSMUST00000028050.14, ENSMUST00000102960.11, ENSMUST00000193636.6

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGCTGCTCTGGGGGAAGGCTGTAGCTCTGCAGATGGGTCATCTGTaGACTCCCTGCAACCAGGTAGGTACCGCTCTGCGCAGGCCCTGG +
Preference number: 1 (lower is better)
Translates to: QLLWGKAVALQMGHL*TPCNQVGTALRRPW
Trigger: CCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGTGCACAGATGACCCATCTGCAGAGCTACAGCCTTCCCCCAGAGCAGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp TGGGGGAAGGCTGTAGCTCTGCAGATGGGTCATCTGTGCACTCCCTaGAACCAGGTAGGTACCGCTCTGCGCAGGCCCTGGATATACCTG +
Preference number: 1 (lower is better)
Translates to: WGKAVALQMGHLCTP*NQVGTALRRPWIYL
Trigger: CAGGTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGTGCACAGATGACCCATCTGCAGAGCTACAGCCTTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 90 bp GCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCTaGGTGCTGAGATTAAGGGTGTCCATCATCATCTTCACACCCAGC +
Preference number: 1 (lower is better)
Translates to: ARLASNSPSSACLHL*VLRLRVSIIIFTPS
Trigger: GCTGGGTGTGAAGATGATGATGGACACCCTTAATCTCAGCACTCAGAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR CCA 90 bp CTGTGCACTCCCTGCAACCAGGTAGGTACCGCTCTGCGCAGGCCCTaGATATACCTGGGAAGCAGAGACAGCCGACGACTGCAGATAGTA +
Preference number: 1 (lower is better)
Translates to: LCTPCNQVGTALRRP*IYLGSRDSRRLQIV
Trigger: TACTATCTGCAGTCGTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGTGCACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp TCAGCGGCTTCAAAATCGTACACGGCGCGGACTTTCCTGCCTTCGTaGTGGTGGTTAGTGAGGAGGTTAGATGTGCTGGGGTACAGCGTG +
Preference number: 1 (lower is better)
Translates to: SAASKSYTARTFLPS*WWLVRRLDVLGYSV
Trigger: CACGCTGTACCCCAGCACATCTAACCTCCTCACTAACCACCAGCACGAAGGCAGGAAAGTCCGCGCCGTGTACGATTTTGAAGCCGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR CCA 90 bp TGCAGAGGATGGAACTGCTCCTTGGCTGATAGAAGACAGCTGCTCTaGGGGAAGGCTGTAGCTCTGCAGATGGGTCATCTGTGCACTCCC +
Preference number: 1 (lower is better)
Translates to: CRGWNCSLADRRQLL*GKAVALQMGHLCTP
Trigger: GGGAGTGCACAGATGACCCATCTGCAGAGCTACAGCCTTCCCCCAGAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp AGGAGGTTAGATGTGCTGGGGTACAGCGTGGACACGGGGGCTGACTaGTGCCTTTGCTCCTTCAGGGACAACTCAATAGCTTTGGCTAAA +
Preference number: 1 (lower is better)
Translates to: RRLDVLGYSVDTGAD*CLCSFRDNSIALAK
Trigger: TTTAGCCAAAGCTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATCTAACCTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp GATGTGCTGGGGTACAGCGTGGACACGGGGGCTGACTGCTGCCTTTaGTCCTTCAGGGACAACTCAATAGCTTTGGCTAAATCTTCTTCT +
Preference number: 1 (lower is better)
Translates to: DVLGYSVDTGADCCL*SFRDNSIALAKSSS
Trigger: AGAAGAAGATTTAGCCAAAGCTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp AGGTTAGATGTGCTGGGGTACAGCGTGGACACGGGGGCTGACTGCTaGCTTTGCTCCTTCAGGGACAACTCAATAGCTTTGGCTAAATCT +
Preference number: 1 (lower is better)
Translates to: RLDVLGYSVDTGADC*LCSFRDNSIALAKS
Trigger: AGATTTAGCCAAAGCTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATCTAACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp CTGGGTCTGCTGACTAGGAAGAGCTTGATTTGCAGAGGATGGAACTaGTCCTTGGCTGATAGAAGACAGCTGCTCTGGGGGAAGGCTGTA +
Preference number: 1 (lower is better)
Translates to: LGLLTRKSLICRGWN*SLADRRQLLWGKAV
Trigger: TACAGCCTTCCCCCAGAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp ATTCGGGTAAGAAGCCTGGGTCTGCTGACTAGGAAGAGCTTGATTTaGAGAGGATGGAACTGCTCCTTGGCTGATAGAAGACAGCTGCTC +
Preference number: 1 (lower is better)
Translates to: IRVRSLGLLTRKSLI*RGWNCSLADRRQLL
Trigger: GAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 90 bp AGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGGAGGACTATATATTaGAGCCTGGCTAGGATACGAATTTCCTTGAACAGAACTAACCAT +
Preference number: 1 (lower is better)
Translates to: SSSSGSSSSSRRTIY*SLARIRISLNRTNH
Trigger: ATGGTTAGTTCTGTTCAAGGAAATTCGTATCCTAGCCAGGCTTCAATATATAGTCCTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 90 bp GCGGACACTGCAATAACAAGGTACATACAGGACATTTACAGACACTaGTGCTTTCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTG +
Preference number: 1 (lower is better)
Translates to: ADTAITRYIQDIYRH*CFLDVCLCYTETLL
Trigger: CAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTATGTACCTTGTTATTGCAGTGTCCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR TCA 90 bp AATGAGAGAGAAACTGGTGGTAGAAGATATATAAGGTCCTGGGTTTaGTCCCAGCACTGTGAAGAATGTGAGGCTGGTGGGTGGACAGAG +
Preference number: 1 (lower is better)
Translates to: NERETGGRRYIRSWV*SQHCEECEAGGWTE
Trigger: CTCTGTCCACCCACCAGCCTCACATTCTTCACAGTGCTGGGATCAAACCCAGGACCTTATATATCTTCTACCACCAGTTTCTCTCTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR GCA 90 bp AGGTACATACAGGACATTTACAGACACTGCTGCTTTCTGGACGTGTaGCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAA +
Preference number: 1 (lower is better)
Translates to: RYIQDIYRHCCFLDV*LCYTETLLVNSSRK
Trigger: TTTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTATGTACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR GCA 90 bp ATACAGGACATTTACAGACACTGCTGCTTTCTGGACGTGTGCCTGTaGTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAAAGACTT +
Preference number: 1 (lower is better)
Translates to: IQDIYRHCCFLDVCL*YTETLLVNSSRKRL
Trigger: AAGTCTTTTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 90 bp ACTAAGTGGGGCCTTAGTCTGCATCTCAGTTTCCCATTAACAAAATaGAGTGCCAATGTTGCCTCTCTCATAGGTAATATATGGAGTCAG +
Preference number: 1 (lower is better)
Translates to: TKWGLSLHLSFPLTK*SANVASLIGNIWSQ
Trigger: CTGACTCCATATATTACCTATGAGAGAGGCAACATTGGCACTCCATTTTGTTAATGGGAAACTGAGATGCAGACTAAGGCCCCACTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 90 bp AGTGAGAGAAAGGAAGTTCAATTTCAGTGTTCTGACCTCAATGCCTaGTTTTGGATCTTAACTAAGTGGGGCCTTAGTCTGCATCTCAGT +
Preference number: 1 (lower is better)
Translates to: SERKEVQFQCSDLNA*FWILTKWGLSLHLS
Trigger: ACTGAGATGCAGACTAAGGCCCCACTTAGTTAAGATCCAAAACCAGGCATTGAGGTCAGAACACTGAAATTGAACTTCCTTTCTCTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR TCA 90 bp GGATCAGAGAGATACACCACAGATACACTGGTGAGGACTGAAAAATaGATGGAGCACTCTGAGTTAATGAGAAACTCACCTTTATGCAGT +
Preference number: 1 (lower is better)
Translates to: GSERYTTDTLVRTEK*MEHSELMRNSPLCS
Trigger: ACTGCATAAAGGTGAGTTTCTCATTAACTCAGAGTGCTCCATTCATTTTTCAGTCCTCACCAGTGTATCTGTGGTGTATCTCTCTGATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR TCA 90 bp TTACATGTCAATGCATGTACAGATAACATTGGCCACAGCAGTTGTTaGTCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAA +
Preference number: 1 (lower is better)
Translates to: LHVNACTDNIGHSSC*SSECCRPGNFTRQQ
Trigger: TTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAACAACTGCTGTGGCCAATGTTATCTGTACATGCATTGACATGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR GCA 90 bp GCCAACTCTAGACACAAATGGGGCAGTCTGAACAGCGATGCCTACTaGCTGTTTTTCTTATCCAGATTTATGCTTATTAATCATTGTAAT +
Preference number: 1 (lower is better)
Translates to: ANSRHKWGSLNSDAY*LFFLSRFMLINHCN
Trigger: ATTACAATGATTAATAAGCATAAATCTGGATAAGAAAAACAGGCAGTAGGCATCGCTGTTCAGACTGCCCCATTTGTGTCTAGAGTTGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 90 bp CAACTGGTCCATTTTATCCTCATCAATAAAGGCTGGTTCTGGTTCTaGTTCTATTGTCTCTATCTGAACATCATCATTGAACTGTACCGT +
Preference number: 1 (lower is better)
Translates to: QLVHFILINKGWFWF*FYCLYLNIIIELYR
Trigger: ACGGTACAGTTCAATGATGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCAGCCTTTATTGATGAGGATAAAATGGACCAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR TCA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCCTAGTCAGGCCGCTTaGAGGATGGAAGGCTGGTGC +
Preference number: 2 (lower is better)
Translates to: DRVSLCSLVGLELTRQARPSQAA*RMEGWC
Trigger: GCACCAGCCTTCCATCCTTCAAGCGGCCTGACTAGG...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR TCA 90 bp ACTCCCTGCAACCAGGTAGGTACCGCTCTGCGCAGGCCCTGGATATACCTGGGACGTATGCTGGTATGGTaGCAACCAGTAGAGGGCAGA +
Preference number: 2 (lower is better)
Translates to: TPCNQVGTALRRPWIYLGRMLVW*QPVEGR
Trigger: TCTGCCCTCTACTGGTTGTCACCATACCAGCATACG...TCCCAGGTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCTGTCCCCAAGACGTTTaGAAGGTGTTCACTCAGGAG +
Preference number: 2 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSCPQDV*KVFTQE
Trigger: CTCCTGAGTGAACACCTTCCAAACGTCTTGGGGACA...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CCA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTACTCGGCAGGCCAGGCTaGCCTCAAACTCACCGAGCT +
Preference number: 2 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLLGRPG*PQTHRA
Trigger: AGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAG...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR GCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCCAGTCTGAACAGCGATaGCTACTGCCTGTTTTTCTT +
Preference number: 2 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSQSEQR*LLPVFL
Trigger: AAGAAAAACAGGCAGTAGGCATCGCTGTTCAGACTG...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 90 bp CCTTCCTCTTCCCGCCAGCCCCTCCCATGGAGCCCTACTCTCAGGTaGATAGCTTCCTTTTCTCGGATTATTGTTACATGCACACATGCA +
Preference number: 2 (lower is better)
Translates to: PSSSRQPLPWSPTLR*IASFSRIIVTCTHA
Trigger: TGCATGTGTGCATGTAACAATAATCCGAGAAAAGGAAGCTATCAACCTGAGAGTAGGGCTCCATGGGAGGGGCTGGCGGGAAGAGGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR GCA 90 bp ACTCCCTGCAACCAGGTAGGTACCGCTCTGCGCAGGCCCTGGATATACCTGGGAAAGGTTCTTGATCATTaGCGATATCAGACTAAGCTG +
Preference number: 2 (lower is better)
Translates to: TPCNQVGTALRRPWIYLGKVLDH*RYQTKL
Trigger: CAGCTTAGTCTGATATCGGCAATGATCAAGAACCTT...TCCCAGGTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCTCTGACCTCAATGCCTaGTTTTGGATCTTAACTAAG +
Preference number: 2 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSSDLNA*FWILTK
Trigger: CTTAGTTAAGATCCAAAACCAGGCATTGAGGTCAGA...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CCA 90 bp GGTACCGCTCTGCGCAGGCCCTGGATATACCTGGGAAGCAGAGACAGCCGACGACTAATTTTTGTCTCATaGTCCACAATACCTGGAACA +
Preference number: 2 (lower is better)
Translates to: GTALRRPWIYLGSRDSRRLIFVS*STIPGT
Trigger: TGTTCCAGGTATTGTGGACCATGAGACAAAAATTAG...TCGTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCCTGCGCAGAGCGGTACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR TCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCTTTGAGGAGAAAGGATaGATCCACTTTAACTTACTG +
Preference number: 2 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSFEEKG*IHFNLL
Trigger: CAGTAAGTTAAAGTGGATTCATCCTTTCTCCTCAAA...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR TCA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTACGTATGCTGGTATGGTaGCAACCAGTAGAGGGCAGA +
Preference number: 2 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLRMLVW*QPVEGR
Trigger: TCTGCCCTCTACTGGTTGTCACCATACCAGCATACG...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR CAA 90 bp CATTGCATTCGGGTAAGAAGCCTGGGTCTGCTGACTAGGAAGAGCTaGATTTGCAGAGGATGGAACTGCTCCTTGGCTGATAGAAGACAG +
Preference number: 2 (lower is better)
Translates to: HCIRVRSLGLLTRKS*ICRGWNCSLADRRQ
Trigger: CTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCGAATGCAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp AGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGGACAAAGGAAACCAATaGCCTTACTTCTTTCAAAAT +
Preference number: 2 (lower is better)
Translates to: SLVGLELTRQARLASNSPDKGNQ*PYFFQN
Trigger: ATTTTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTC...CGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR GCA 90 bp GACATAGTAGGTCCTGCATTCTGGTATATGGTGACATCAGCAGGTACAGGAACAGCTGACTGCTGCCTTTaGTCCTTCAGGGACAACTCA +
Preference number: 2 (lower is better)
Translates to: DIVGPAFWYMVTSAGTGTADCCL*SFRDNS
Trigger: TGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGC...TGTTCCTGTACCTGCTGATGTCACCATATACCAGAATGCAGGACCTACTATGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCCACTGCAATTCCAATaGTCACTAACAAAGTTACAT +
Preference number: 2 (lower is better)
Translates to: DRVSLCSLVGLELTRQARPLQFQ*SLTKLH
Trigger: ATGTAACTTTGTTAGTGACCATTGGAATTGCAGTGG...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR CCA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAAGGCCCTGGATATACCTaGGAAGCAGAGACAGCCGAC +
Preference number: 2 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQGPGYT*EAETAD
Trigger: GTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCC...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp GACATAGTAGGTCCTGCATTCTGGTATATGGTGACATCAGCAGGTACAGGAACATACGAGAGCTGGGCTTaGTTTTGCTTGTTCTGCAGC +
Preference number: 2 (lower is better)
Translates to: DIVGPAFWYMVTSAGTGTYESWA*FCLFCS
Trigger: GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTA...TGTTCCTGTACCTGCTGATGTCACCATATACCAGAATGCAGGACCTACTATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp TGCCTCCTGTTTGAGGCAGGGTTGATGATGTTAAAGTATAGTTTGGCACCTGGGAGGAAGAGCTTGATTTaGAGAGGATGGAACTGCTCC +
Preference number: 2 (lower is better)
Translates to: CLLFEAGLMMLKYSLAPGRKSLI*RGWNCS
Trigger: GGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCT...CCCAGGTGCCAAACTATACTTTAACATCATCAACCCTGCCTCAAACAGGAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACCTTGGCTACGAGAGCTaGGCTTGCTTTTGCTTGTTC +
Preference number: 2 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYLGYES*ACFCLF
Trigger: GAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAG...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAAACTCTAGACACAAATaGGGCAGTCTGAACAGCGAT +
Preference number: 2 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKENSRHK*GSLNSD
Trigger: ATCGCTGTTCAGACTGCCCCATTTGTGTCTAGAGTT...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CCA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTATATAGACCGCTGTTATaGTTTTTGAGACAGGGTCTC +
Preference number: 2 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLYRPLL*FLRQGL
Trigger: GAGACCCTGTCTCAAAAACCATAACAGCGGTCTATA...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR CAA 90 bp TGCTTGTTCTGCAGCCTGAGAGCCAATAGCTGGGAATGTTACACCTaGTTCCTTAAGGTTCTTGATCATTGCCGATATCAGACTAAGCTG +
Preference number: 2 (lower is better)
Translates to: CLFCSLRANSWECYT*FLKVLDHCRYQTKL
Trigger: CAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAGGCTGCAGAACAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR TCA 90 bp TACATTGGGTCTTCATTCATTAACTTCGTATACAGTGAGAGAGCTTCCATCACCGCTTGTTCTGCAGCCTaGGAGCCAATAGCTGGGAAT +
Preference number: 2 (lower is better)
Translates to: YIGSSFINFVYSERASITACSAA*EPIAGN
Trigger: ATTCCCAGCTATTGGCTCTCAGGCTGCAGAACAAGC...GGTGATGGAAGCTCTCTCACTGTATACGAAGTTAATGAATGAAGACCCAATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAAGACATTTACAGACACTaGTGCTTTCTGGACGTGTGC +
Preference number: 2 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQDIYRH*CFLDVC
Trigger: GCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTC...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CCA 90 bp GACATAGTAGGTCCTGCATTCTGGTATATGGTGACATCAGCAGGTACAGGAACAAAGATGAAGCAGCTCTaGCAAGTCTGGCTGATTATC +
Preference number: 2 (lower is better)
Translates to: DIVGPAFWYMVTSAGTGTKMKQL*QVWLII
Trigger: GATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTT...TGTTCCTGTACCTGCTGATGTCACCATATACCAGAATGCAGGACCTACTATGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATGGTGTGGAACCTATGGCATTTACAGACACTGCTaGTTTCTGGACGTGTGCCTG +
Preference number: 2 (lower is better)
Translates to: MLHTHQKYSSVAWCGTYGIYRHC*FLDVCL
Trigger: CAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAAT...GCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR GCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACACTATAACAGGACAATaGCTTCAGGTCAGTGTGCTA +
Preference number: 2 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYTITGQ*LQVSVL
Trigger: TAGCACACTGACCTGAAGGCATTGTCCTGTTATAGT...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAATCATGCAGCCCAAATTaGGCTTCTTCACTATCTTCC +
Preference number: 2 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQSCSPN*ASSLSS
Trigger: GGAAGATAGTGAAGAAGCCCAATTTGGGCTGCATGA...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR TCA 90 bp GCATACATAGAGTACATTGGGTCTTCATTCATTAACTTCGTATACAGTGAGAGAAAAAGCCCCACGCCTTaGTGGGTTTCACCTTTCCAC +
Preference number: 2 (lower is better)
Translates to: AYIEYIGSSFINFVYSERKSPTP*WVSPFH
Trigger: GTGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTT...TCTCTCACTGTATACGAAGTTAATGAATGAAGACCCAATGTACTCTATGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTAGCTGGGCTTGCTTTTaGTTGTTCTGCAGCCTGAGA +
Preference number: 2 (lower is better)
Translates to: VDLLSAADQVILQDNNNLSWACF*LFCSLR
Trigger: TCTCAGGCTGCAGAACAAGCAAAAGCAAGCCCAGCT...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp CCCCTTGAAATGAGTGATAAATTCACAAACATGGCAACACTGATCAAGAAGAAAAGAGGGCAAAGGGACTaGAGTGTGCTAGCACACACT +
Preference number: 2 (lower is better)
Translates to: PLEMSDKFTNMATLIKKKRGQRD*SVLAHT
Trigger: AGTGTGTGCTAGCACACTCCAGTCCCTTTGCCCTCT...TTTCTTCTTGATCAGTGTTGCCATGTTTGTGAATTTATCACTCATTTCAAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CCA 90 bp ATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTATTGCACCAAAACTGTaGCTACCGTATGCTGGTATG +
Preference number: 2 (lower is better)
Translates to: IPNHHGNYDKGNQCPYFFIAPKL*LPYAGM
Trigger: CATACCAGCATACGGTAGCCACAGTTTTGGTGCAAT...AAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAATTAATCCTAGAACTTTaGAGGCAGAGGCAGGCAGAT +
Preference number: 2 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQLILEL*RQRQAD
Trigger: ATCTGCCTGCCTCTGCCTCCAAAGTTCTAGGATTAA...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR CCA 90 bp ATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCTGAGAGCCAATAGCTaGGAATGTTACACCTTGTTC +
Preference number: 2 (lower is better)
Translates to: IPNHHGNYDKGNQCPYFFLRANS*ECYTLF
Trigger: GAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG...AAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR TCA 90 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATGGTGTGGAACCTATGGCCCTAATGTGCTGCAGTaGGAGAAAGGAAGTTCAATT +
Preference number: 2 (lower is better)
Translates to: MLHTHQKYSSVAWCGTYGPNVLQ*EKGSSI
Trigger: AATTGAACTTCCTTTCTCTCACTGCAGCACATTAGG...GCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR GCA 90 bp TGCCTCCTGTTTGAGGCAGGGTTGATGATGTTAAAGTATAGTTTGGCACCTGGGTTCAGCAGTAAGATCTaGAGTTACAAAATTAGAAGG +
Preference number: 2 (lower is better)
Translates to: CLLFEAGLMMLKYSLAPGFSSKI*SYKIRR
Trigger: CCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAA...CCCAGGTGCCAAACTATACTTTAACATCATCAACCCTGCCTCAAACAGGAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACCCACTGCAATTCCAATaGTCACTAACAAAGTTACAT +
Preference number: 2 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYPLQFQ*SLTKLH
Trigger: ATGTAACTTTGTTAGTGACCATTGGAATTGCAGTGG...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR-3UTR GCA 90 bp ATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTTTATTCTCCTCTAATTaGACCAAAACTGTGGCTACC +
Preference number: 2 (lower is better)
Translates to: IPNHHGNYDKGNQCPYFFLFSSN*TKTVAT
Trigger: GGTAGCCACAGTTTTGGTGCAATTAGAGGAGAATAA...AAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR-3UTR CCA 90 bp GCATACATAGAGTACATTGGGTCTTCATTCATTAACTTCGTATACAGTGAGAGAATTGCACCAAAACTGTaGCTACCGTATGCTGGTATG +
Preference number: 2 (lower is better)
Translates to: AYIEYIGSSFINFVYSERIAPKL*LPYAGM
Trigger: CATACCAGCATACGGTAGCCACAGTTTTGGTGCAAT...TCTCTCACTGTATACGAAGTTAATGAATGAAGACCCAATGTACTCTATGTATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR CAA 90 bp ATGGAGCACTCTGAGTTAATGAGAAACTCACCTTTATGCAGTATTTaGACAAACTCATTTATAAGGACAAAAAGCTGTGCAGCCATGGTG +
Preference number: 2 (lower is better)
Translates to: MEHSELMRNSPLCSI*TNSFIRTKSCAAMV
Trigger: CACCATGGCTGCACAGCTTTTTGTCCTTATAAATGAGTTTGTCAAAATACTGCATAAAGGTGAGTTTCTCATTAACTCAGAGTGCTCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 90 bp GGTACTCATGTAATGTCCACAGCTACCTCCAGTAGTAACAGTGTTTaGAGGAGAAAGGATGAATCCACTTTAACTTACTGGTCTATTAAT +
Preference number: 2 (lower is better)
Translates to: GTHVMSTATSSSNSV*RRKDESTLTYWSIN
Trigger: ATTAATAGACCAGTAAGTTAAAGTGGATTCATCCTTTCTCCTCAAAACACTGTTACTACTGGAGGTAGCTGTGGACATTACATGAGTACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CCA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAAAACATCTGTAACAACTaGTCCATTTTATCCTCATCA +
Preference number: 2 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQNICNN*SILSSS
Trigger: TGATGAGGATAAAATGGACCAGTTGTTACAGATGTT...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR CAA 90 bp TTAGAAATACAGGTATATACTCAGTGCAATAAAGTGTCTCAAGCTTaGAGGCCGTTCTCCAAGAATACATATCCAACTTGTATCTTTCCA +
Preference number: 2 (lower is better)
Translates to: LEIQVYTQCNKVSQA*RPFSKNTYPTCIFP
Trigger: TGGAAAGATACAAGTTGGATATGTATTCTTGGAGAACGGCCTCAAAGCTTGAGACACTTTATTGCACTGAGTATATACCTGTATTTCTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR TCA 90 bp AATGTTGTAAGTAGTTTCATTCCTCAGGGTAGAGGCATTCCTCTAAAAATTCAGCATTTTCTTTCCAGTTaGAAATTCTCCATGTGCATC +
Preference number: 2 (lower is better)
Translates to: NVVSSFIPQGRGIPLKIQHFLSS*KFSMCI
Trigger: GATGCACATGGAGAATTTTCAACTGGAAAGAAAATG...CTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR CCA 72 bp CCCTGCAACCAGGTAGGTACCGCTCTGCGCAGGCCCTaGATATACCTGGGAAGCAGAGACAGCCGACGACTG +
Preference number: 3 (lower is better)
Translates to: PCNQVGTALRRP*IYLGSRDSRRL
Trigger: CAGTCGTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CAA 90 bp GGTACCGCTCTGCGCAGGCCCTGGATATACCTGGGAAGCAGAGACAGCCGACGACTACGAGAGCTGGGCTaGCTTTTGCTTGTTCTGCAG +
Preference number: 3 (lower is better)
Translates to: GTALRRPWIYLGSRDSRRLRELG*LLLVLQ
Trigger: CTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAG...TCGTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCCTGCGCAGAGCGGTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 72 bp GTGCTGGGGTACAGCGTGGACACGGGGGCTGACTGCTaGCTTTGCTCCTTCAGGGACAACTCAATAGCTTTG +
Preference number: 3 (lower is better)
Translates to: VLGYSVDTGADC*LCSFRDNSIAL
Trigger: CAAAGCTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 72 bp GATGTGCTGGGGTACAGCGTGGACACGGGGGCTGACTaGTGCCTTTGCTCCTTCAGGGACAACTCAATAGCT +
Preference number: 3 (lower is better)
Translates to: DVLGYSVDTGAD*CLCSFRDNSIA
Trigger: AGCTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 72 bp CCCAGGGTCCTTGGCTACGAGAGCTGGGCTTGCTTTTaGTTGTTCTGCAGCCTGAGAGCCAATAGCTGGGAA +
Preference number: 3 (lower is better)
Translates to: PRVLGYESWACF*LFCSLRANSWE
Trigger: TTCCCAGCTATTGGCTCTCAGGCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAGGACCCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 72 bp GGGTACAGCGTGGACACGGGGGCTGACTGCTGCCTTTaGTCCTTCAGGGACAACTCAATAGCTTTGGCTAAA +
Preference number: 3 (lower is better)
Translates to: GYSVDTGADCCL*SFRDNSIALAK
Trigger: TTTAGCCAAAGCTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 72 bp TCAAAATCGTACACGGCGCGGACTTTCCTGCCTTCGTaGTGGTGGTTAGTGAGGAGGTTAGATGTGCTGGGG +
Preference number: 3 (lower is better)
Translates to: SKSYTARTFLPS*WWLVRRLDVLG
Trigger: CCCCAGCACATCTAACCTCCTCACTAACCACCAGCACGAAGGCAGGAAAGTCCGCGCCGTGTACGATTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR CCA 72 bp TGGAACTGCTCCTTGGCTGATAGAAGACAGCTGCTCTaGGGGAAGGCTGTAGCTCTGCAGATGGGTCATCTG +
Preference number: 3 (lower is better)
Translates to: WNCSLADRRQLL*GKAVALQMGHL
Trigger: CAGATGACCCATCTGCAGAGCTACAGCCTTCCCCCAGAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR GCA 72 bp CTGACTAGGAAGAGCTTGATTTGCAGAGGATGGAACTaGTCCTTGGCTGATAGAAGACAGCTGCTCTGGGGG +
Preference number: 3 (lower is better)
Translates to: LTRKSLICRGWN*SLADRRQLLWG
Trigger: CCCCCAGAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CAA 90 bp CCCCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTCACACCCAGCAAGGATaGTGTGAAGTGCAACTTGCA +
Preference number: 3 (lower is better)
Translates to: PQHCMRTVAQDRAVVCLLHTQQG*CEVQLA
Trigger: TGCAAGTTGCACTTCACACAATCCTTGCTGGGTGTG...AAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR CAA 90 bp TCAAGTCCTATAGCAGAGCCTTCTGAGAATATGCTTGCTGTGGCTGAGGTGGCTTCTTCTTCTTCCTTTTaGGTAGCCACAGTCCCAGGG +
Preference number: 3 (lower is better)
Translates to: SSPIAEPSENMLAVAEVASSSSF*VATVPG
Trigger: CCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGA...AGCCACCTCAGCCACAGCAAGCATATTCTCAGAAGGCTCTGCTATAGGACTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 72 bp AGCGGCAGCAGCAGCAGCAGCAGGAGGACTATATATTaGAGCCTGGCTAGGATACGAATTTCCTTGAACAGA +
Preference number: 3 (lower is better)
Translates to: SGSSSSSRRTIY*SLARIRISLNR
Trigger: TCTGTTCAAGGAAATTCGTATCCTAGCCAGGCTTCAATATATAGTCCTCCTGCTGCTGCTGCTGCTGCCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR CCA 72 bp GGTACATACAGGACATTTACAGACACTGCTGCTTTCTaGACGTGTGCCTGTGCTACACAGAAACACTGCTGG +
Preference number: 3 (lower is better)
Translates to: GTYRTFTDTAAF*TCACATQKHCW
Trigger: CCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTATGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CAA 90 bp TCAAGTCCTATAGCAGAGCCTTCTGAGAATATGCTTGCTGTGGCTGAGGTGGCTCCATCTGGTGACACATaGCTTCAAGATGAAGCAGCT +
Preference number: 3 (lower is better)
Translates to: SSPIAEPSENMLAVAEVAPSGDT*LQDEAA
Trigger: AGCTGCTTCATCTTGAAGCAATGTGTCACCAGATGG...AGCCACCTCAGCCACAGCAAGCATATTCTCAGAAGGCTCTGCTATAGGACTTGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 72 bp TTGCACCAAAACTGTGGCTACCGTATGCTGGTATGGTaGCAACCAGTAGAGGGCAGAAGCTACAGGAAGATA +
Preference number: 3 (lower is better)
Translates to: LHQNCGYRMLVW*QPVEGRSYRKI
Trigger: TATCTTCCTGTAGCTTCTGCCCTCTACTGGTTGTCACCATACCAGCATACGGTAGCCACAGTTTTGGTGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR CCA 72 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATaGTGTGGAACCTATGGCAGGAGCAGACAAGAGGGC +
Preference number: 3 (lower is better)
Translates to: MLHTHQKYSSVA*CGTYGRSRQEG
Trigger: GCCCTCTTGTCTGCTCCTGCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR GCA 72 bp GCAATAACAAGGTACATACAGGACATTTACAGACACTaGTGCTTTCTGGACGTGTGCCTGTGCTACACAGAA +
Preference number: 3 (lower is better)
Translates to: AITRYIQDIYRH*CFLDVCLCYTE
Trigger: TTCTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTATGTACCTTGTTATTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 72 bp CATCTGGTGACACATTGCTTCAAGATGAAGCAGCTCTaGCAAGTCTGGCTGATTATCACTAGGATCTGTACT +
Preference number: 3 (lower is better)
Translates to: HLVTHCFKMKQL*QVWLIITRICT
Trigger: AGTACAGATCCTAGTGATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTTGAAGCAATGTGTCACCAGATG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CAA 90 bp GACATAGTAGGTCCTGCATTCTGGTATATGGTGACATCAGCAGGTACAGGAACAATGAATCTCCTAACATaGTCAATGGCATTCAGCGGA +
Preference number: 3 (lower is better)
Translates to: DIVGPAFWYMVTSAGTGTMNLLT*SMAFSG
Trigger: TCCGCTGAATGCCATTGACAATGTTAGGAGATTCAT...TGTTCCTGTACCTGCTGATGTCACCATATACCAGAATGCAGGACCTACTATGTC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CAA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAATTTAATCCTAGAACTTaGGAGGCAGAGGCAGGCAGA +
Preference number: 3 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQFNPRT*EAEAGR
Trigger: TCTGCCTGCCTCTGCCTCCAAAGTTCTAGGATTAAA...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR-3UTR CAA 90 bp TGCCTCCTGTTTGAGGCAGGGTTGATGATGTTAAAGTATAGTTTGGCACCTGGGGACAACTCAATAGCTTaGGCTAAATCTTCTTCTTCC +
Preference number: 3 (lower is better)
Translates to: CLLFEAGLMMLKYSLAPGDNSIA*AKSSSS
Trigger: GGAAGAAGAAGATTTAGCCAAAGCTATTGAGTTGTC...CCCAGGTGCCAAACTATACTTTAACATCATCAACCCTGCCTCAAACAGGAGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 72 bp TTAAACCCTCTTAGCACACACACAGGCTACAACTACTaGTCTCAGGCACTGACATATTATCACCCCAACACT +
Preference number: 3 (lower is better)
Translates to: LNPLSTHTGYNY*SQALTYYHPNT
Trigger: AGTGTTGGGGTGATAATATGTCAGTGCCTGAGATCAGTAGTTGTAGCCTGTGTGTGTGCTAAGAGGGTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR CCA 72 bp GAAAGATGTTACACACCCATCAAAAATATAGTAGTGTaGCATGGTGTGGAACCTATGGCAGGAGCAGACAAG +
Preference number: 3 (lower is better)
Translates to: ERCYTPIKNIVV*HGVEPMAGADK
Trigger: CTTGTCTGCTCCTGCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACATCTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 72 bp TGCTTTTGCTTGTTCTGCAGCCTGAGAGCCAATAGCTaGGAATGTTACACCTTGTTCCTTAAGGTTCTTGAT +
Preference number: 3 (lower is better)
Translates to: CFCLFCSLRANS*ECYTLFLKVLD
Trigger: ATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAGGCTGCAGAACAAGCAAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 72 bp TATATGTATGTATGTTTTTGTTCATGGCTTCGGGGCTaGCACCTCGGTACTAAAGAACCAACAGGGATGCAT +
Preference number: 3 (lower is better)
Translates to: YMYVCFCSWLRG*HLGTKEPTGMH
Trigger: ATGCATCCCTGTTGGTTCTTTAGTACCGAGGTGTCAGCCCCGAAGCCATGAACAAAAACATACATACATATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 72 bp AAGGAAGTTCAATTTCAGTGTTCTGACCTCAATGCCTaGTTTTGGATCTTAACTAAGTGGGGCCTTAGTCTG +
Preference number: 3 (lower is better)
Translates to: KEVQFQCSDLNA*FWILTKWGLSL
Trigger: CAGACTAAGGCCCCACTTAGTTAAGATCCAAAACCAGGCATTGAGGTCAGAACACTGAAATTGAACTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CCA 72 bp AAGGAACATTATTCTCCTCTAATTGCACCAAAACTGTaGCTACCGTATGCTGGTATGGTGACAACCAGTAGA +
Preference number: 3 (lower is better)
Translates to: KEHYSPLIAPKL*LPYAGMVTTSR
Trigger: TCTACTGGTTGTCACCATACCAGCATACGGTAGCCACAGTTTTGGTGCAATTAGAGGAGAATAATGTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR CCA 72 bp ACACATTGCTTCAAGATGAAGCAGCTCTGGCAAGTCTaGCTGATTATCACTAGGATCTGTACTTTGCAACAT +
Preference number: 3 (lower is better)
Translates to: THCFKMKQLWQV*LIITRICTLQH
Trigger: ATGTTGCAAAGTACAGATCCTAGTGATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTTGAAGCAATGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR TCA 72 bp AATGCATGTACAGATAACATTGGCCACAGCAGTTGTTaGTCTTCTGAGTGCTGCAGACCAGGTAATTTTACA +
Preference number: 3 (lower is better)
Translates to: NACTDNIGHSSC*SSECCRPGNFT
Trigger: TGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAACAACTGCTGTGGCCAATGTTATCTGTACATGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR CCA 72 bp GGCCTTAGTCTGCATCTCAGTTTCCCATTAACAAAATaGAGTGCCAATGTTGCCTCTCTCATAGGTAATATA +
Preference number: 3 (lower is better)
Translates to: GLSLHLSFPLTK*SANVASLIGNI
Trigger: TATATTACCTATGAGAGAGGCAACATTGGCACTCCATTTTGTTAATGGGAAACTGAGATGCAGACTAAGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CAA 90 bp ACTGTAATGATTTCTCCAGCTTTAAAGGTAAGCTCATTATCCTCAGCGGCTTCACATGTACAGATAACATaGGCCACAGCAGTTGTTGAT +
Preference number: 3 (lower is better)
Translates to: TVMISPALKVSSLSSAASHVQIT*ATAVVD
Trigger: ATCAACAACTGCTGTGGCCAATGTTATCTGTACATG...TGAAGCCGCTGAGGATAATGAGCTTACCTTTAAAGCTGGAGAAATCATTACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CAA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAATGGGAATGTTACACCTaGTTCCTTAAGGTTCTTGAT +
Preference number: 3 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQWECYT*FLKVLD
Trigger: ATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCA...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
3UTR-3UTR CAA 90 bp CCCCTTGAAATGAGTGATAAATTCACAAACATGGCAACACTGATCAAGAAGAAAATCATGCAGCCCAAATaGGGCTTCTTCACTATCTTC +
Preference number: 3 (lower is better)
Translates to: PLEMSDKFTNMATLIKKKIMQPK*GFFTIF
Trigger: GAAGATAGTGAAGAAGCCCAATTTGGGCTGCATGAT...TTTCTTCTTGATCAGTGTTGCCATGTTTGTGAATTTATCACTCATTTCAAGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CAA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTATGAATCTCCTAACATaGTCAATGGCATTCAGCGGA +
Preference number: 3 (lower is better)
Translates to: VDLLSAADQVILQDNNNLMNLLT*SMAFSG
Trigger: TCCGCTGAATGCCATTGACAATGTTAGGAGATTCAT...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR TCA 72 bp ACTATCTTCCTTGAAGTCACGTTAACATCCGGGACATaGCAACATAACAATGTCTTTAAAAGCTCACCCACT +
Preference number: 3 (lower is better)
Translates to: TIFLEVTLTSGT*QHNNVFKSSPT
Trigger: AGTGGGTGAGCTTTTAAAGACATTGTTATGTTGTCATGTCCCGGATGTTAACGTGACTTCAAGGAAGATAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR TCA 72 bp TCTATTTATCAAATTATAGACCGCTGTTATGGTTTTTaGGACAGGGTCTCACTATGTAGCCTGGTGGGCTTA +
Preference number: 3 (lower is better)
Translates to: SIYQIIDRCYGF*DRVSLCSLVGL
Trigger: TAAGCCCACCAGGCTACATAGTGAGACCCTGTCTCAAAAACCATAACAGCGGTCTATAATTTGATAAATAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR GCA 72 bp AGACACAAATGGGGCAGTCTGAACAGCGATGCCTACTaGCTGTTTTTCTTATCCAGATTTATGCTTATTAAT +
Preference number: 3 (lower is better)
Translates to: RHKWGSLNSDAY*LFFLSRFMLIN
Trigger: ATTAATAAGCATAAATCTGGATAAGAAAAACAGGCAGTAGGCATCGCTGTTCAGACTGCCCCATTTGTGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR GCA 72 bp TTACTACACACCCATCCATCATCATTCCTAATGTGCTaGAGTGAGAGAAAGGAAGTTCAATTTCAGTGTTCT +
Preference number: 3 (lower is better)
Translates to: LLHTHPSSFLMC*SERKEVQFQCS
Trigger: AGAACACTGAAATTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTGTAGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR GCA 72 bp TTGTGCAATAAATTAGAAATACAGGTATATACTCAGTaGAATAAAGTGTCTCAAGCTTTGAGGCCGTTCTCC +
Preference number: 3 (lower is better)
Translates to: LCNKLEIQVYTQ*NKVSQALRPFS
Trigger: GGAGAACGGCCTCAAAGCTTGAGACACTTTATTGCACTGAGTATATACCTGTATTTCTAATTTATTGCACAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR-3UTR CAA 90 bp TATATTCACATGATCACCACTGCAATTCCAATGGTCACTAACAAAGTTACATGTTGTTCCTTAAGGTTCTaGATCATTGCCGATATCAGA +
Preference number: 3 (lower is better)
Translates to: YIHMITTAIPMVTNKVTCCSLRF*IIADIR
Trigger: TCTGATATCGGCAATGATCAAGAACCTTAAGGAACA...ACATGTAACTTTGTTAGTGACCATTGGAATTGCAGTGGTGATCATGTGAATATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR TCA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCTATGCTTGCTGTGGCTaGGGTGGCTGTTGGCTGCCT +
Preference number: 4 (lower is better)
Translates to: TRQARLASNSPSSACLHLYACCG*GGCWLP
Trigger: AGGCAGCCAACAGCCACCTCAGCCACAGCAAGCATA...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCGGCCCTGGATATACCTaGGAAGCAGAGACAGCCGAC +
Preference number: 4 (lower is better)
Translates to: TRQARLASNSPSSACLHLGPGYT*EAETAD
Trigger: GTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCC...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCCACAAATATCCAAGATaGGGCCCCAGTCCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: TRQARLASNSPSSACLHLHKYPR*GPSPQQ
Trigger: CTGCTGAGGACTGGGGCCTCATCTTGGATATTTGTG...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCAGCCTTCTGAGAATATaGTTGCTGTGGCTGAGGTGG +
Preference number: 4 (lower is better)
Translates to: TRQARLASNSPSSACLHLSLLRI*LLWLRW
Trigger: CCACCTCAGCCACAGCAAGCATATTCTCAGAAGGCT...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCCACATTGCTTCAAGATaGAGCAGCTCTGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: TRQARLASNSPSSACLHLHIASR*SSSGKS
Trigger: AGACTTGCCAGAGCTGCTTCATCTTGAAGCAATGTG...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp AGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGTTGCTGTGGCTGAGGTaGCTGTTGGCTGCCTCCTGT +
Preference number: 4 (lower is better)
Translates to: SLVGLELTRQARLASNSPLLWLR*LLAASC
Trigger: ACAGGAGGCAGCCAACAGCCACCTCAGCCACAGCAA...CGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCCATTCTGGTATATGGTaGCATCAGCAGGTACAGGAA +
Preference number: 4 (lower is better)
Translates to: TRQARLASNSPSSACLHLHSGIW*HQQVQE
Trigger: TTCCTGTACCTGCTGATGTCACCATATACCAGAATG...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCGCTTGTTCTGCAGCCTaGGAGCCAATAGCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSACSAA*EPIAGN
Trigger: ATTCCCAGCTATTGGCTCTCAGGCTGCAGAACAAGC...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCGCTGACTGCTGCCTTTaGTCCTTCAGGGACAACTCA +
Preference number: 4 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSADCCL*SFRDNS
Trigger: TGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGC...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp AGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGGCTGACTGCTGCCTTTaGTCCTTCAGGGACAACTCA +
Preference number: 4 (lower is better)
Translates to: SLVGLELTRQARLASNSPADCCL*SFRDNS
Trigger: TGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGC...CGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGAGAAGACAGCTGCTCTaGGGGAAGGCTGTAGCTCTG +
Preference number: 4 (lower is better)
Translates to: DRVSLCSLVGLELTRQARRRQLL*GKAVAL
Trigger: CAGAGCTACAGCCTTCCCCCAGAGCAGCTGTCTTCT...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp AGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGGATGGAACTGCTCCTTaGCTGATAGAAGACAGCTGC +
Preference number: 4 (lower is better)
Translates to: SLVGLELTRQARLASNSPDGTAP*LIEDSC
Trigger: GCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATC...CGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp CCCCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTGCTCTGCGCAGGCCCTaGATATACCTGGGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: PQHCMRTVAQDRAVVCLLALRRP*IYLGSR
Trigger: TCTGCTTCCCAGGTATATCCAGGGCCTGCGCAGAGC...AAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGAGCTGGGCTTGCTTTTaGTTGTTCTGCAGCCTGAGA +
Preference number: 4 (lower is better)
Translates to: DRVSLCSLVGLELTRQARSWACF*LFCSLR
Trigger: TCTCAGGCTGCAGAACAAGCAAAAGCAAGCCCAGCT...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp TACAGGACATTTACAGACACTGCTGCTTTCTGGACGTGTGCCTGTGCTACACAGGGCCCTGGATATACCTaGGAAGCAGAGACAGCCGAC +
Preference number: 4 (lower is better)
Translates to: YRTFTDTAAFWTCACATQGPGYT*EAETAD
Trigger: GTCGGCTGTCTCTGCTTCCCAGGTATATCCAGGGCC...CTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 72 bp TCCCGCCAGCCCCTCCCATGGAGCCCTACTCTCAGGTaGATAGCTTCCTTTTCTCGGATTATTGTTACATGC +
Preference number: 4 (lower is better)
Translates to: SRQPLPWSPTLR*IASFSRIIVTC
Trigger: GCATGTAACAATAATCCGAGAAAAGGAAGCTATCAACCTGAGAGTAGGGCTCCATGGGAGGGGCTGGCGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 72 bp CGGGTAAGAAGCCTGGGTCTGCTGACTAGGAAGAGCTaGATTTGCAGAGGATGGAACTGCTCCTTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: RVRSLGLLTRKS*ICRGWNCSLAD
Trigger: ATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR GCA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCAAGGTTCTTGATCATTaGCGATATCAGACTAAGCTG +
Preference number: 4 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSKVLDH*RYQTKL
Trigger: CAGCTTAGTCTGATATCGGCAATGATCAAGAACCTT...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAGCTCTGCGCAGGCCCTaGATATACCTGGGAAGCAGA +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKEALRRP*IYLGSR
Trigger: TCTGCTTCCCAGGTATATCCAGGGCCTGCGCAGAGC...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR TCA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTAGCTTGTTCTGCAGCCTaGGAGCCAATAGCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLACSAA*EPIAGN
Trigger: ATTCCCAGCTATTGGCTCTCAGGCTGCAGAACAAGC...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp CCCCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTATAGCAGAGCCTTCTaGGAATATGCTTGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: PQHCMRTVAQDRAVVCLLYSRAF*EYACCG
Trigger: GCCACAGCAAGCATATTCTCAGAAGGCTCTGCTATA...AAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp CCCCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTGCAGAGGATGGAACTaGTCCTTGGCTGATAGAAGA +
Preference number: 4 (lower is better)
Translates to: PQHCMRTVAQDRAVVCLLCRGWN*SLADRR
Trigger: TCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCA...AAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAAGAAGACAGCTGCTCTaGGGGAAGGCTGTAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKERRQLL*GKAVAL
Trigger: CAGAGCTACAGCCTTCCCCCAGAGCAGCTGTCTTCT...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGAAGGTTCTTGATCATTaGCGATATCAGACTAAGCTG +
Preference number: 4 (lower is better)
Translates to: DRVSLCSLVGLELTRQARKVLDH*RYQTKL
Trigger: CAGCTTAGTCTGATATCGGCAATGATCAAGAACCTT...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp TACAGGACATTTACAGACACTGCTGCTTTCTGGACGTGTGCCTGTGCTACACAGCTTGGCTACGAGAGCTaGGCTTGCTTTTGCTTGTTC +
Preference number: 4 (lower is better)
Translates to: YRTFTDTAAFWTCACATQLGYES*ACFCLF
Trigger: GAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAG...CTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp CCCCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTAAGATGAAGCAGCTCTaGCAAGTCTGGCTGATTATC +
Preference number: 4 (lower is better)
Translates to: PQHCMRTVAQDRAVVCLLKMKQL*QVWLII
Trigger: GATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTT...AAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACCACAAATATCCAAGATaGGGCCCCAGTCCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYHKYPR*GPSPQQ
Trigger: CTGCTGAGGACTGGGGCCTCATCTTGGATATTTGTG...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
CDS-3UTR GCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAATACGAGAGCTGGGCTTaGTTTTGCTTGTTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKEYESWA*FCLFCS
Trigger: GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTA...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAGATGGAACTGCTCCTTaGCTGATAGAAGACAGCTGC +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKEDGTAP*LIEDSC
Trigger: GCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATC...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR TCA 90 bp CTGCTGGTAAACTCTTCAAGGAAAAGACTTCACCCGTGTTCTTACAAAGCCAACCACAAATATCCAAGATaGGGCCCCAGTCCTCAGCAG +
Preference number: 4 (lower is better)
Translates to: LLVNSSRKRLHPCSYKANHKYPR*GPSPQQ
Trigger: CTGCTGAGGACTGGGGCCTCATCTTGGATATTTGTG...GTTGGCTTTGTAAGAACACGGGTGAAGTCTTTTCCTTGAAGAGTTTACCAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR TCA 90 bp GACATAGTAGGTCCTGCATTCTGGTATATGGTGACATCAGCAGGTACAGGAACATCACATACTTTAGGATaGCCCCTGTGCGAGATTGGC +
Preference number: 4 (lower is better)
Translates to: DIVGPAFWYMVTSAGTGTSHTLG*PLCEIG
Trigger: GCCAATCTCGCACAGGGGTCATCCTAAAGTATGTGA...TGTTCCTGTACCTGCTGATGTCACCATATACCAGAATGCAGGACCTACTATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR CCA 90 bp TACAGGACATTTACAGACACTGCTGCTTTCTGGACGTGTGCCTGTGCTACACAGTTGATTTGCAGAGGATaGAACTGCTCCTTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: YRTFTDTAAFWTCACATQLICRG*NCSLAD
Trigger: ATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAA...CTGTGTAGCACAGGCACACGTCCAGAAAGCAGCAGTGTCTGTAAATGTCCTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACAGAATATGCTTGCTGTaGCTGAGGTGGCTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYRICLL*LRWLLA
Trigger: AGCCAACAGCCACCTCAGCCACAGCAAGCATATTCT...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATGGTGTGGAACCTATGGCAAAAGCCCCACGCCTTaGTGGGTTTCACCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: MLHTHQKYSSVAWCGTYGKSPTP*WVSPFH
Trigger: GTGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTT...GCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR TCA 90 bp CTGCTGGTAAACTCTTCAAGGAAAAGACTTCACCCGTGTTCTTACAAAGCCAACCCAGCTTTTCATCAATaGGAGGTCCCATCTGGTGAC +
Preference number: 4 (lower is better)
Translates to: LLVNSSRKRLHPCSYKANPAFHQ*EVPSGD
Trigger: GTCACCAGATGGGACCTCTCATTGATGAAAAGCTGG...GTTGGCTTTGTAAGAACACGGGTGAAGTCTTTTCCTTGAAGAGTTTACCAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp TACCAGGTAGATAGGAGCACTCTGAAAAGAGACAAGGTCTGTAACATAAAGGGACAGATGGGTCATCTGTaGACTCCCTGCAACCAGGTA +
Preference number: 4 (lower is better)
Translates to: YQVDRSTLKRDKVCNIKGQMGHL*TPCNQV
Trigger: TACCTGGTTGCAGGGAGTGCACAGATGACCCATCTG...TCCCTTTATGTTACAGACCTTGTCTCTTTTCAGAGTGCTCCTATCTACCTGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp ATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAGATGGGTCATCTGTaGACTCCCTGCAACCAGGTA +
Preference number: 4 (lower is better)
Translates to: IPNHHGNYDKGNQCPYFFQMGHL*TPCNQV
Trigger: TACCTGGTTGCAGGGAGTGCACAGATGACCCATCTG...AAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAGCTTGCATAGCAACATaGGGGTCTTTATGGTTCACT +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKEACIAT*GSLWFT
Trigger: AGTGAACCATAAAGACCCCCATGTTGCTATGCAAGC...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAACTGAGAGCCAATAGCTaGGAATGTTACACCTTGTTC +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKELRANS*ECYTLF
Trigger: GAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAAAGATGAAGCAGCTCTaGCAAGTCTGGCTGATTATC +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKEKMKQL*QVWLII
Trigger: GATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTT...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR TCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAACACATTGCTTCAAGATaGAGCAGCTCTGGCAAGTCT +
Preference number: 4 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQHIASR*SSSGKS
Trigger: AGACTTGCCAGAGCTGCTTCATCTTGAAGCAATGTG...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAATGCTTTTGCTTGTTCTaGAGCCTGAGAGCCAATAGC +
Preference number: 4 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQCFCLF*SLRANS
Trigger: GCTATTGGCTCTCAGGCTGCAGAACAAGCAAAAGCA...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp CTGCTGGTAAACTCTTCAAGGAAAAGACTTCACCCGTGTTCTTACAAAGCCAACTGCAGAGGATGGAACTaGTCCTTGGCTGATAGAAGA +
Preference number: 4 (lower is better)
Translates to: LLVNSSRKRLHPCSYKANCRGWN*SLADRR
Trigger: TCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCA...GTTGGCTTTGTAAGAACACGGGTGAAGTCTTTTCCTTGAAGAGTTTACCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp CTGCTGGTAAACTCTTCAAGGAAAAGACTTCACCCGTGTTCTTACAAAGCCAACAGGAAGAGCTTGATTTaGAGAGGATGGAACTGCTCC +
Preference number: 4 (lower is better)
Translates to: LLVNSSRKRLHPCSYKANRKSLI*RGWNCS
Trigger: GGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCT...GTTGGCTTTGTAAGAACACGGGTGAAGTCTTTTCCTTGAAGAGTTTACCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp TATATTCACATGATCACCACTGCAATTCCAATGGTCACTAACAAAGTTACATGTGAGGTGGCTGTTGGCTaGCTCCTGTTTGAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: YIHMITTAIPMVTNKVTCEVAVG*LLFEAG
Trigger: CCCTGCCTCAAACAGGAGGCAGCCAACAGCCACCTC...ACATGTAACTTTGTTAGTGACCATTGGAATTGCAGTGGTGATCATGTGAATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACCTGAGAGCCAATAGCTaGGAATGTTACACCTTGTTC +
Preference number: 4 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYLRANS*ECYTLF
Trigger: GAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp CCCCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTGTTTTAATCATTTCTaGTTCAGCAGTAAGATCTGC +
Preference number: 4 (lower is better)
Translates to: PQHCMRTVAQDRAVVCLLCFNHF*FSSKIC
Trigger: GCAGATCTTACTGCTGAACCAGAAATGATTAAAACA...AAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp AGCCTAATCCCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACGTAGGTCCTGCATTCTaGTATATGGTGACATCAGCA +
Preference number: 4 (lower is better)
Translates to: SLIPNHHGNYDKGNQCPYVGPAF*YMVTSA
Trigger: TGCTGATGTCACCATATACCAGAATGCAGGACCTAC...GTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGGGATTAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
3UTR CAA 72 bp GAATTAAGAACTTTCAGCCATCTGTCCCCAAGACGTTaGGAAGGTGTTCACTCAGGAGGTGGTACTCATGTA +
Preference number: 4 (lower is better)
Translates to: ELRTFSHLSPRR*EGVHSGGGTHV
Trigger: TACATGAGTACCACCTCCTGAGTGAACACCTTCCAAACGTCTTGGGGACAGATGGCTGAAAGTTCTTAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 72 bp TGCAGCCTGAGAGCCAATAGCTGGGAATGTTACACCTaGTTCCTTAAGGTTCTTGATCATTGCCGATATCAG +
Preference number: 4 (lower is better)
Translates to: CSLRANSWECYT*FLKVLDHCRYQ
Trigger: CTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAGGCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR TCA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTAAAAGCCCCACGCCTTaGTGGGTTTCACCTTTCCAC +
Preference number: 4 (lower is better)
Translates to: VDLLSAADQVILQDNNNLKSPTP*WVSPFH
Trigger: GTGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTT...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp AACCATTGCATTCGGGTAAGAAGCCTGGGTCTGCTGACTAGGAAGAGCTTGATTATTCAACTCACTAGTTaGTTTCTCAACATCCTGGTC +
Preference number: 4 (lower is better)
Translates to: NHCIRVRSLGLLTRKSLIIQLTS*FLNILV
Trigger: GACCAGGATGTTGAGAAAGCAACTAGTGAGTTGAAT...AATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCGAATGCAATGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR GCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAAAGAAGAGTTAAGGCTTaGATAGCAACATGGGGGTCT +
Preference number: 4 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQRRVKA*IATWGS
Trigger: AGACCCCCATGTTGCTATGCAAGCCTTAACTCTTCT...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAAAGGAAGAGCTTGATTTaGAGAGGATGGAACTGCTCC +
Preference number: 4 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQRKSLI*RGWNCS
Trigger: GGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCT...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAAAATTTTGCCACAGTTTaGTACACATGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQNFATV*YTCSQK
Trigger: CTTCTGGGAGCATGTGTATCAAACTGTGGCAAAATT...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR TCA 90 bp AATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAAAATCCAGCTTTTCATCAATaGGAGGTCCCATCTGGTGAC +
Preference number: 4 (lower is better)
Translates to: NHHGNYDKGNQCPYFFQNPAFHQ*EVPSGD
Trigger: GTCACCAGATGGGACCTCTCATTGATGAAAAGCTGG...ATTTTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp AATGTTGTAAGTAGTTTCATTCCTCAGGGTAGAGGCATTCCTCTAAAAATTCAGTGGCTGCCTCCTGTTTaGGGCAGGGTTGATGATGTT +
Preference number: 4 (lower is better)
Translates to: NVVSSFIPQGRGIPLKIQWLPPV*GRVDDV
Trigger: AACATCATCAACCCTGCCTCAAACAGGAGGCAGCCA...CTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTTACGAGAGCTGGGCTTaGTTTTGCTTGTTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: VDLLSAADQVILQDNNNLYESWA*FCLFCS
Trigger: GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTA...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTATTCAGCAGTAAGATCTaGAGTTACAAAATTAGAAGG +
Preference number: 4 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLFSSKI*SYKIRR
Trigger: CCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAA...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR TCA 90 bp CCTAATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAAAATTTTGCCACAGTTTaGTACACATGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: PNHHGNYDKGNQCPYFFQNFATV*YTCSQK
Trigger: CTTCTGGGAGCATGTGTATCAAACTGTGGCAAAATT...TTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAAATTCAACTCACTAGTTaGTTTCTCAACATCCTGGTC +
Preference number: 4 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQIQLTS*FLNILV
Trigger: GACCAGGATGTTGAGAAAGCAACTAGTGAGTTGAAT...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp CCCCTTGAAATGAGTGATAAATTCACAAACATGGCAACACTGATCAAGAAGAAAAGCTGGGCTTGCTTTTaGTTGTTCTGCAGCCTGAGA +
Preference number: 4 (lower is better)
Translates to: PLEMSDKFTNMATLIKKKSWACF*LFCSLR
Trigger: TCTCAGGCTGCAGAACAAGCAAAAGCAAGCCCAGCT...TTTCTTCTTGATCAGTGTTGCCATGTTTGTGAATTTATCACTCATTTCAAGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CCA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAATGTTTTAATCATTTCTaGTTCAGCAGTAAGATCTGC +
Preference number: 4 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKECFNHF*FSSKIC
Trigger: GCAGATCTTACTGCTGAACCAGAAATGATTAAAACA...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 72 bp GTAATGTCCACAGCTACCTCCAGTAGTAACAGTGTTTaGAGGAGAAAGGATGAATCCACTTTAACTTACTGG +
Preference number: 4 (lower is better)
Translates to: VMSTATSSSNSV*RRKDESTLTYW
Trigger: CCAGTAAGTTAAAGTGGATTCATCCTTTCTCCTCAAAACACTGTTACTACTGGAGGTAGCTGTGGACATTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 72 bp ATAGCTGGGAATGTTACACCTTGTTCCTTAAGGTTCTaGATCATTGCCGATATCAGACTAAGCTGTGGATCA +
Preference number: 4 (lower is better)
Translates to: IAGNVTPCSLRF*IIADIRLSCGS
Trigger: TGATCCACAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR GCA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTAGAAGAGTTAAGGCTTaGATAGCAACATGGGGGTCT +
Preference number: 4 (lower is better)
Translates to: VDLLSAADQVILQDNNNLRRVKA*IATWGS
Trigger: AGACCCCCATGTTGCTATGCAAGCCTTAACTCTTCT...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR GCA 90 bp AATGTTGTAAGTAGTTTCATTCCTCAGGGTAGAGGCATTCCTCTAAAAATTCAGTGCTTTTGCTTGTTCTaGAGCCTGAGAGCCAATAGC +
Preference number: 4 (lower is better)
Translates to: NVVSSFIPQGRGIPLKIQCFCLF*SLRANS
Trigger: GCTATTGGCTCTCAGGCTGCAGAACAAGCAAAAGCA...CTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp AATCACCACGGCAACTATGACAAAGGAAACCAATGCCCTTACTTCTTTCAAAATTTGATTTGCAGAGGATaGAACTGCTCCTTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: NHHGNYDKGNQCPYFFQNLICRG*NCSLAD
Trigger: ATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAA...ATTTTGAAAGAAGTAAGGGCATTGGTTTCCTTTGTCATAGTTGCCGTGGTGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp AATGTTGTAAGTAGTTTCATTCCTCAGGGTAGAGGCATTCCTCTAAAAATTCAGGCTTGCATAGCAACATaGGGGTCTTTATGGTTCACT +
Preference number: 4 (lower is better)
Translates to: NVVSSFIPQGRGIPLKIQACIAT*GSLWFT
Trigger: AGTGAACCATAAAGACCCCCATGTTGCTATGCAAGC...CTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CCA 90 bp CTGCTGGTAAACTCTTCAAGGAAAAGACTTCACCCGTGTTCTTACAAAGCCAACAACATCTGTAACAACTaGTCCATTTTATCCTCATCA +
Preference number: 4 (lower is better)
Translates to: LLVNSSRKRLHPCSYKANNICNN*SILSSS
Trigger: TGATGAGGATAAAATGGACCAGTTGTTACAGATGTT...GTTGGCTTTGTAAGAACACGGGTGAAGTCTTTTCCTTGAAGAGTTTACCAGCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
3UTR CAA 72 bp CAGGTATATACTCAGTGCAATAAAGTGTCTCAAGCTTaGAGGCCGTTCTCCAAGAATACATATCCAACTTGT +
Preference number: 4 (lower is better)
Translates to: QVYTQCNKVSQA*RPFSKNTYPTC
Trigger: ACAAGTTGGATATGTATTCTTGGAGAACGGCCTCAAAGCTTGAGACACTTTATTGCACTGAGTATATACCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp TACCAGGTAGATAGGAGCACTCTGAAAAGAGACAAGGTCTGTAACATAAAGGGATTCAGCAGTAAGATCTaGAGTTACAAAATTAGAAGG +
Preference number: 4 (lower is better)
Translates to: YQVDRSTLKRDKVCNIKGFSSKI*SYKIRR
Trigger: CCTTCTAATTTTGTAACTGCAGATCTTACTGCTGAA...TCCCTTTATGTTACAGACCTTGTCTCTTTTCAGAGTGCTCCTATCTACCTGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR GCA 90 bp TATATTCACATGATCACCACTGCAATTCCAATGGTCACTAACAAAGTTACATGTATTCAACTCACTAGTTaGTTTCTCAACATCCTGGTC +
Preference number: 4 (lower is better)
Translates to: YIHMITTAIPMVTNKVTCIQLTS*FLNILV
Trigger: GACCAGGATGTTGAGAAAGCAACTAGTGAGTTGAAT...ACATGTAACTTTGTTAGTGACCATTGGAATTGCAGTGGTGATCATGTGAATATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
3UTR CAA 72 bp AAAGCAAATTTTAGGATGTTAATGAATCTCCTAACATaGTCAATGGCATTCAGCGGAAATATGCCACCAAGA +
Preference number: 4 (lower is better)
Translates to: KANFRMLMNLLT*SMAFSGNMPPR
Trigger: TCTTGGTGGCATATTTCCGCTGAATGCCATTGACAATGTTAGGAGATTCATTAACATCCTAAAATTTGCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102960.11
ENSMUST00000193636.6
CDS-3UTR CAA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCCTTCTGAGAATATGCTaGCTGTGGCTGAGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: TRQARLASNSPSSACLHLLLRIC*LWLRWL
Trigger: CAGCCACCTCAGCCACAGCAAGCATATTCTCAGAAG...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp ACTCGGCAGGCCAGGCTGGCCTCAAACTCACCGAGCTCCGCCTGCCTCCACCTCCTGACTAGGAAGAGCTaGATTTGCAGAGGATGGAAC +
Preference number: 5 (lower is better)
Translates to: TRQARLASNSPSSACLHLLTRKS*ICRGWN
Trigger: GTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAG...GAGGTGGAGGCAGGCGGAGCTCGGTGAGTTTGAGGCCAGCCTGGCCTGCCGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGAGGTCCTGTGCGAGATaGGCCAACCTTATCACAAAT +
Preference number: 5 (lower is better)
Translates to: DRVSLCSLVGLELTRQARRSCAR*ANLITN
Trigger: ATTTGTGATAAGGTTGGCCAATCTCGCACAGGACCT...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp GACAGGGTCTCACTATGTAGCCTGGTGGGCTTAGAACTTACTCGGCAGGCCAGGCCATCTGGTGACACATaGCTTCAAGATGAAGCAGCT +
Preference number: 5 (lower is better)
Translates to: DRVSLCSLVGLELTRQARPSGDT*LQDEAA
Trigger: AGCTGCTTCATCTTGAAGCAATGTGTCACCAGATGG...CCTGGCCTGCCGAGTAAGTTCTAAGCCCACCAGGCTACATAGTGAGACCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS GCA 90 bp CTTCGGGTAAGAAGCCTGGGTCTGCTGACTAGGAAGAGCTTGATTTaGAGAGGATGGAACTGCTCCTTGGCTGATAGAAGACAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: LRVRSLGLLTRKSLI*RGWNCSLADRRQLL
Trigger: GAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp AGGCCGGGCGGATTCTCACTGACTCACAGGCAGGTTTTCCCAGCCCTTCTCAGCTGTTCCTTAAGGTTCTaGATCATTGCCGATATCAGA +
Preference number: 5 (lower is better)
Translates to: RPGGFSLTHRQVFPALLSCSLRF*IIADIR
Trigger: TCTGATATCGGCAATGATCAAGAACCTTAAGGAACA...GCTGAGAAGGGCTGGGAAAACCTGCCTGTGAGTCAGTGAGAATCCGCCCGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTACTACGAGAGCTGGGCTaGCTTTTGCTTGTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLLRELG*LLLVLQ
Trigger: CTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAG...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTATCTTCTTCTTCCTTTTaGGTAGCCACAGTCCCAGGG +
Preference number: 5 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLSSSSF*VATVPG
Trigger: CCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGA...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp CCAACACTGCATGAGGACTGTAGCACAGGACAGAGCTGTAGTCTGTCTCCTTTAAAAAAGCCCCACGCCTaGATGGGTTTCACCTTTCCA +
Preference number: 5 (lower is better)
Translates to: PTLHEDCSTGQSCSLSPLKKPHA*MGFTFP
Trigger: TGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTTT...TAAAGGAGACAGACTACAGCTCTGTCCTGTGCTACAGTCCTCATGCAGTGTTGG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp TCTGGACGTGTGCCTGTGCTACACAGAAACACTGCTGGTAAACTCTTCAAGGAAAAAAAGCCCCACGCCTaGATGGGTTTCACCTTTCCA +
Preference number: 5 (lower is better)
Translates to: SGRVPVLHRNTAGKLFKEKKPHA*MGFTFP
Trigger: TGGAAAGGTGAAACCCATCAAGGCGTGGGGCTTTTT...TTCCTTGAAGAGTTTACCAGCAGTGTTTCTGTGTAGCACAGGCACACGTCCAGA
49% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATGGTGTGGAACCTATGGCCTACGAGAGCTGGGCTaGCTTTTGCTTGTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: MLHTHQKYSSVAWCGTYGLRELG*LLLVLQ
Trigger: CTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAG...GCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp CACACCCATCCATCATCATTCCTAATGTGCTGCAGTGAGAGAAAGGAAGTTCAATCTTCTTCTTCCTTTTaGGTAGCCACAGTCCCAGGG +
Preference number: 5 (lower is better)
Translates to: HTHPSSFLMCCSERKEVQSSSSF*VATVPG
Trigger: CCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGA...TTGAACTTCCTTTCTCTCACTGCAGCACATTAGGAATGATGATGGATGGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp CTGCTGGTAAACTCTTCAAGGAAAAGACTTCACCCGTGTTCTTACAAAGCCAACCTGACTAGGAAGAGCTaGATTTGCAGAGGATGGAAC +
Preference number: 5 (lower is better)
Translates to: LLVNSSRKRLHPCSYKANLTRKS*ICRGWN
Trigger: GTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAG...GTTGGCTTTGTAAGAACACGGGTGAAGTCTTTTCCTTGAAGAGTTTACCAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATGGTGTGGAACCTATGGCCCATCTGGTGACACATaGCTTCAAGATGAAGCAGCT +
Preference number: 5 (lower is better)
Translates to: MLHTHQKYSSVAWCGTYGPSGDT*LQDEAA
Trigger: AGCTGCTTCATCTTGAAGCAATGTGTCACCAGATGG...GCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp TACATTGGGTCTTCATTCATTAACTTCGTATACAGTGAGAGAGCTTCCATCACCGACCCCTGTGCGAGATaGGCCAACCTTATCACAAAT +
Preference number: 5 (lower is better)
Translates to: YIGSSFINFVYSERASITDPCAR*ANLITN
Trigger: ATTTGTGATAAGGTTGGCCAATCTCGCACAGGGGTC...GGTGATGGAAGCTCTCTCACTGTATACGAAGTTAATGAATGAAGACCCAATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6
CDS-3UTR CAA 90 bp CCCCTTGAAATGAGTGATAAATTCACAAACATGGCAACACTGATCAAGAAGAAAAGGTCCTGTGCGAGATaGGCCAACCTTATCACAAAT +
Preference number: 5 (lower is better)
Translates to: PLEMSDKFTNMATLIKKKRSCAR*ANLITN
Trigger: ATTTGTGATAAGGTTGGCCAATCTCGCACAGGACCT...TTTCTTCTTGATCAGTGTTGCCATGTTTGTGAATTTATCACTCATTTCAAGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp ATGTTACACACCCATCAAAAATATAGTAGTGTGGCATGGTGTGGAACCTATGGCTGGGAATGTTACACCTaGTTCCTTAAGGTTCTTGAT +
Preference number: 5 (lower is better)
Translates to: MLHTHQKYSSVAWCGTYGWECYT*FLKVLD
Trigger: ATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCA...GCCATAGGTTCCACACCATGCCACACTACTATATTTTTGATGGGTGTGTAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTGACAACTCAATAGCTTaGGCTAAATCTTCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: VDLLSAADQVILQDNNNLDNSIA*AKSSSS
Trigger: GGAAGAAGAAGATTTAGCCAAAGCTATTGAGTTGTC...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp GTTGATCTTCTGAGTGCTGCAGACCAGGTAATTTTACAAGACAACAACAATCTTCTGTTTGAGGCAGGGTaGATGATGTTAAAGTATAGT +
Preference number: 5 (lower is better)
Translates to: VDLLSAADQVILQDNNNLLFEAG*MMLKYS
Trigger: ACTATACTTTAACATCATCAACCCTGCCTCAAACAG...AAGATTGTTGTTGTCTTGTAAAATTACCTGGTCTGCAGCACTCAGAAGATCAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp AATGTTGTAAGTAGTTTCATTCCTCAGGGTAGAGGCATTCCTCTAAAAATTCAGTGTTCCTTAAGGTTCTaGATCATTGCCGATATCAGA +
Preference number: 5 (lower is better)
Translates to: NVVSSFIPQGRGIPLKIQCSLRF*IIADIR
Trigger: TCTGATATCGGCAATGATCAAGAACCTTAAGGAACA...CTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS-3UTR CAA 90 bp CCCCTTGAAATGAGTGATAAATTCACAAACATGGCAACACTGATCAAGAAGAAAGACAACTCAATAGCTTaGGCTAAATCTTCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: PLEMSDKFTNMATLIKKKDNSIA*AKSSSS
Trigger: GGAAGAAGAAGATTTAGCCAAAGCTATTGAGTTGTC...TTTCTTCTTGATCAGTGTTGCCATGTTTGTGAATTTATCACTCATTTCAAGGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028050.14
CDS-3UTR CAA 90 bp AATGTTGTAAGTAGTTTCATTCCTCAGGGTAGAGGCATTCCTCTAAAAATTCAGAGGATACGAATTTCCTaGAACAGAACTAACCATTGC +
Preference number: 5 (lower is better)
Translates to: NVVSSFIPQGRGIPLKIQRIRIS*NRTNHC
Trigger: GCAATGGTTAGTTCTGTTCAAGGAAATTCGTATCCT...CTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102960.11
CDS CCA 72 bp TTTTTCACATACTTTAGGATGACCCCTGTGCGAGATTaGCCAACCTTATCACAAATATCCAAGATGAGGCCC +
Preference number: 6 (lower is better)
Translates to: FFTYFRMTPVRD*PTLSQISKMRP
Trigger: GGGCCTCATCTTGGATATTTGTGATAAGGTTGGCCAATCTCGCACAGGGGTCATCCTAAAGTATGTGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193636.6