RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ST7L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045576

Ensembl transcript IDs: ENSMUST00000059271.13, ENSMUST00000106769.8, ENSMUST00000123876.6, ENSMUST00000183914.8, ENSMUST00000199335.2, ENSMUST00000200132.5

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTGAGGGTTTCACTTTCTCTGCTGTTGGCAGGAGAGCCCGGCTCTaGAATGCTACTCTCTGTTCCTCCCATCAGTGGCCGCAAATGGCT +
Preference number: 1 (lower is better)
Translates to: SEGFTFSAVGRRARL*NATLCSSHQWPQMA
Trigger: AGCCATTTGCGGCCACTGATGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCCTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR GCA 90 bp AAGCACTCTGCAGGGCAGCCACTTCTCCAGCCCGATAAGGCAGCATaGTATCCTGGTGTTCCAATTCCTCGCATTGGTGGCCAGAATAAC +
Preference number: 1 (lower is better)
Translates to: KHSAGQPLLQPDKAA*YPGVPIPRIGGQNN
Trigger: GTTATTCTGGCCACCAATGCGAGGAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCCCTGCAGAGTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR GCA 90 bp GGGTTTCACTTTCTCTGCTGTTGGCAGGAGAGCCCGGCTCTGAAATaGTACTCTCTGTTCCTCCCATCAGTGGCCGCAAATGGCTTATGG +
Preference number: 1 (lower is better)
Translates to: GFHFLCCWQESPALK*YSLFLPSVAANGLW
Trigger: CCATAAGCCATTTGCGGCCACTGATGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATaGTTTCCTGCGCTGGTTTATAAATACTCCACACAAGTCCTGGAG +
Preference number: 1 (lower is better)
Translates to: SVFRCSCGLALADER*FPALVYKYSTQVLE
Trigger: CTCCAGGACTTGTGTGGAGTATTTATAAACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR TCA 90 bp TTAAAGGGTTTCTCCAGACCTTGCATTCTGATAGATGGTGGTGTCTaGGGGTTTCACTTTCTCTGCTGTTGGCAGGAGAGCCCGGCTCTG +
Preference number: 1 (lower is better)
Translates to: LKGFSRPCILIDGGV*GFHFLCCWQESPAL
Trigger: CAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCCTCAGACACCACCATCTATCAGAATGCAAGGTCTGGAGAAACCCTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR TCA 90 bp AAAACTAGGAGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTaGAATGTCCCTCCTGTGCCTTCTATGCACTTATTCCCCACTATA +
Preference number: 1 (lower is better)
Translates to: KTRRTFEPRSTCHAW*NVPPVPSMHLFPTI
Trigger: TATAGTGGGGAATAAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR TCA 90 bp AAGAGGGTGGTGTTTCTCGTGCATAGACCATATGTTATGAAGTGGTaGAAAACTAGAAAAGGAGCCTCCAGTTCCTTGTTGCATGTCTTC +
Preference number: 1 (lower is better)
Translates to: KRVVFLVHRPYVMKW*KTRKGASSSLLHVF
Trigger: GAAGACATGCAACAAGGAACTGGAGGCTCCTTTTCTAGTTTTTCACCACTTCATAACATATGGTCTATGCACGAGAAACACCACCCTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR TCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGAGGAGAGCCCGGCTCTaGAATGCTACTCTCTGTTCC +
Preference number: 2 (lower is better)
Translates to: VFRCSCGLALADERCFPARRARL*NATLCS
Trigger: GGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCT...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCTCGCCTTTAATCCCTaGACTTGGGAGGCAGAGGCA +
Preference number: 2 (lower is better)
Translates to: VFRCSCGLALADERCFPALAFNP*TWEAEA
Trigger: TGCCTCTGCCTCCCAAGTGCAGGGATTAAAGGCGAG...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGGGGTTTCACTTTCTCTaGTGTTGGCAGGAGAGCCCG +
Preference number: 2 (lower is better)
Translates to: VFRCSCGLALADERCFPAGFHFL*CWQESP
Trigger: CGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCC...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp CGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCTGGTTGTGAAAAAGGTCTGGTaGTCCTGGGCAGACAAGTTC +
Preference number: 2 (lower is better)
Translates to: RCSCGLALADERCFPALVVKKVW*SWADKF
Trigger: GAACTTGTCTGCCCAGGATCACCAGACCTTTTTCAC...AACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CAA 90 bp GGTGTCAGAGCTGGGATCAGAGCAAAGCAGTTTGGTTCCAGAGTCTaGCTCATAAGCACTCTGCAGGGCAGCCACTTCTCCAGCCCGATA +
Preference number: 2 (lower is better)
Translates to: GVRAGIRAKQFGSRV*LISTLQGSHFSSPI
Trigger: TATCGGGCTGGAGAAGTGGCTGCCCTGCAGAGTGCTTATGAGCAAGACTCTGGAACCAAACTGCTTTGCTCTGATCCCAGCTCTGACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR TCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGACCAGAGCTTGTGTTTaGCACAGTCATGGTAGAAGC +
Preference number: 2 (lower is better)
Translates to: VFRCSCGLALADERCFPATRACV*HSHGRS
Trigger: GCTTCTACCATGACTGTGTCAAACACAAGCTCTGGT...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR CAA 90 bp AGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCCTCGCATaGGTGGCCAGAATAACTGGTGGTGGTGGTGGAAGGAGGCTTCTT +
Preference number: 2 (lower is better)
Translates to: SPIRQHAILVFQFLA*VARITGGGGGRRLL
Trigger: AAGAAGCCTCCTTCCACCACCACCACCAGTTATTCTGGCCACCAATGCGAGGAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CCA 90 bp CGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCTGGTTGTAGGACGTAGGCAGTaGCACAGTCATTGTTTAACT +
Preference number: 2 (lower is better)
Translates to: RCSCGLALADERCFPALVVGRRQ*HSHCLT
Trigger: AGTTAAACAATGACTGTGCCACTGCCTACGTCCTAC...AACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CAA 90 bp CATTCTGATAGATGGTGGTGTCTGAGGGTTTCACTTTCTCTGCTGTaGGCAGGAGAGCCCGGCTCTGAAATGCTACTCTCTGTTCCTCCC +
Preference number: 2 (lower is better)
Translates to: HSDRWWCLRVSLSLL*AGEPGSEMLLSVPP
Trigger: GGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCCTCAGACACCACCATCTATCAGAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCATGCCTCTCACACAGTaGGGTCATGTTAGTCTGAGA +
Preference number: 2 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFMPLTQ*GHVSLR
Trigger: TCTCAGACTAACATGACCTCACTGTGTGAGAGGCAT...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR TCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCTTCCTCTCCTCTAAGTaGACAGGATCCCCTTTTTGG +
Preference number: 2 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFFLSSK*TGSPFW
Trigger: CCAAAAAGGGGATCCTGTTCACTTAGAGGAGAGGAA...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCACCCATCTCTCTCGTTaGCTGTCTGGATCGTTCATA +
Preference number: 2 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFTHLSR*LSGSFI
Trigger: TATGAACGATCCAGACAGGCAACGAGAGAGATGGGT...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp ATAAGCACTCTGCAGGGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCCTCCAGTTCCTTGTTaGATGTCTTCTGTGGAAGCA +
Preference number: 2 (lower is better)
Translates to: ISTLQGSHFSSPIRQHAIPPVPC*MSSVEA
Trigger: TGCTTCCACAGAAGACATGCAACAAGGAACTGGAGG...GATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCCCTGCAGAGTGCTTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp CGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCTGGTTATTTCTTTCCCTCCATaGCTTCTGCATAACTGTGTC +
Preference number: 2 (lower is better)
Translates to: RCSCGLALADERCFPALVISFPP*LLHNCV
Trigger: GACACAGTTATGCAGAAGGCATGGAGGGAAAGAAAT...AACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCTCCCTGAGCAGCAGTTaGAAGTCATTTGTCTTGGAG +
Preference number: 2 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFSLSSS*KSFVLE
Trigger: CTCCAAGACAAATGACTTCCAACTGCTGCTCAGGGA...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR TCA 90 bp ATAAGCACTCTGCAGGGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCTGGAAGGAGGCTTCTTaGGCTTTAAAAGTGCATGCA +
Preference number: 2 (lower is better)
Translates to: ISTLQGSHFSSPIRQHAIWKEAS*ALKVHA
Trigger: TGCATGCACTTTTAAAGCTCAAGAAGCCTCCTTCCA...GATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCCCTGCAGAGTGCTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTATGATGATTGTGTTTaGATGATCCTGGGGACACAT +
Preference number: 2 (lower is better)
Translates to: VFRCSCGLALADERCFPAYDDCV*MILGTH
Trigger: ATGTGTCCCCAGGATCATGCAAACACAATCATCATA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR TCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCAGGGAAATACACTATTaGCTGCTCCATCTTTGTTGC +
Preference number: 2 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFREIHY*LLHLCC
Trigger: GCAACAAAGATGGAGCAGTCAATAGTGTATTTCCCT...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCAGCCCGGCTCTGAAATaGTACTCTCTGTTCCTCCCA +
Preference number: 2 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPSPALK*YSLFLP
Trigger: TGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCT...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CCA 90 bp CTGCAGCGAAGCCTGAGCCGATCCTTTCTTAACATGCTCCTACAAGAGGGTGGTGGGACACATTCATCATaGCATGTGTGTGAAAGTGAG +
Preference number: 2 (lower is better)
Translates to: LQRSLSRSFLNMLLQEGGGTHSS*HVCESE
Trigger: CTCACTTTCACACACATGCCATGATGAATGTGTCCC...ACCACCCTCTTGTAGGAGCATGTTAAGAAAGGATCGGCTCAGGCTTCGCTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CCA 90 bp CATGCTGAGGGCTCTGGTGCTGGCATTGCTGTGACCGTCTATAAATTATCTCTCTGTTCCTCCCATCAGTaGCCGCAAATGGCTTATGGA +
Preference number: 2 (lower is better)
Translates to: HAEGSGAGIAVTVYKLSLCSSHQ*PQMAYG
Trigger: TCCATAAGCCATTTGCGGCCACTGATGGGAGGAACA...GAGAGATAATTTATAGACGGTCACAGCAATGCCAGCACCAGAGCCCTCAGCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp CTACTCTCTGTTCCTCCCATCAGTGGCCGCAAATGGCTTATGGACACTTGTTCAACCAGAGCTTGTGTTTaGCACAGTCATGGTAGAAGC +
Preference number: 2 (lower is better)
Translates to: LLSVPPISGRKWLMDTCSTRACV*HSHGRS
Trigger: GCTTCTACCATGACTGTGTCAAACACAAGCTCTGGT...TGAACAAGTGTCCATAAGCCATTTGCGGCCACTGATGGGAGGAACAGAGAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATACATGCCACGCATGGTaGAATGTCCCTCCTGTGCCT +
Preference number: 2 (lower is better)
Translates to: SELQNSQGYTEKSCLKINTCHAW*NVPPVP
Trigger: AGGCACAGGAGGGACATTTCACCATGCGTGGCATGT...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR GCA 90 bp ATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAACAACTCTCGCCTTTAATCCCTaGACTTGGGAGGCAGAGGCA +
Preference number: 2 (lower is better)
Translates to: MILGTHSSWHVCESERTTLAFNP*TWEAEA
Trigger: TGCCTCTGCCTCCCAAGTGCAGGGATTAAAGGCGAG...AGTTGTTCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR GCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCCTCTCCTGCCCTGAGTaGCTGTTTAAACAACCTTTC +
Preference number: 2 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPLSCPE*LFKQPF
Trigger: GAAAGGTTGTTTAAACAGGCACTCAGGGCAGGAGAG...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGACATGCCACGCATGGTaGAATGTCCCTCCTGTGCCT +
Preference number: 2 (lower is better)
Translates to: VKVITKFPFPIRREWNSQTCHAW*NVPPVP
Trigger: AGGCACAGGAGGGACATTTCACCATGCGTGGCATGT...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp TTGCTTCTTCTTCGGCCAGTAGGACGTAGGCAGTGGCACAGTCATTGTTTAACTGAAATGTCCCTCCTGTaGCTTCTATGCACTTATTCC +
Preference number: 2 (lower is better)
Translates to: LLLLRPVGRRQWHSHCLTEMSLL*LLCTYS
Trigger: GGAATAAGTGCATAGAAGGCACAGGAGGGACATTTC...AGTTAAACAATGACTGTGCCACTGCCTACGTCCTACTGGCCGAAGAAGAAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR GCA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTGCCAGGCAATGGTGCTaGTCGCCTTTAATCCCTGCA +
Preference number: 2 (lower is better)
Translates to: REQLSKLGSLPPLYEFELARQWC*SPLIPA
Trigger: TGCAGGGATTAAAGGCGAGCAGCACCATTGCCTGGC...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR GCA 90 bp ATAAGCACTCTGCAGGGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCTTCTACTTTCAAAGGTaGAATTTTTCATTCTCGCGT +
Preference number: 2 (lower is better)
Translates to: ISTLQGSHFSSPIRQHAIFYFQR*NFSFSR
Trigger: ACGCGAGAATGAAAAATTGCACCTTTGAAAGTAGAA...GATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCCCTGCAGAGTGCTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR TCA 90 bp ATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAACAACTACCAGAGCTTGTGTTTaGCACAGTCATGGTAGAAGC +
Preference number: 2 (lower is better)
Translates to: MILGTHSSWHVCESERTTTRACV*HSHGRS
Trigger: GCTTCTACCATGACTGTGTCAAACACAAGCTCTGGT...AGTTGTTCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR GCA 90 bp GAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTATCAATAGAGATCCCCTaGCTCTGCCTCCCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: ENNFLNLALSHPYMSSNLSIEIP*LCLPSA
Trigger: AGCACTTGGGAGGCAGAGGCAGGGGATCTCTATTGA...TAAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp ATCATTCTAAAAGTGCCTTCCCATGTACACTGCAGGAGATTCAGAGCACCTTCTTCCCTCCATGCCTTCTaGATAACTGTGTCTGAAGGA +
Preference number: 2 (lower is better)
Translates to: IILKVPSHVHCRRFRAPSSLHAF*ITVSEG
Trigger: TCCTTCAGACACAGTTATGCAGAAGGCATGGAGGGA...AGAAGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGGCACTTTTAGAATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CCA 90 bp AAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTGTGCCACATAGAACTTaGGTGTCAGTGAACTTAAAA +
Preference number: 2 (lower is better)
Translates to: KKHMPRMVKCPSCAFYALVPHRT*VSVNLK
Trigger: TTTTAAGTTCACTGACACCCAAGTTCTATGTGGCAC...AAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CAA 90 bp CGTAAGAGCCAACACATCTGCAAGGCACAAAATAGACTAGTTCTTTaGGGTTCTGTTGTTGTTGACCCCCTCACATCTCAATACCTCTCA +
Preference number: 2 (lower is better)
Translates to: RKSQHICKAQNRLVL*GSVVVDPLTSQYLS
Trigger: TGAGAGGTATTGAGATGTGAGGGGGTCAACAACAACAGAACCCAAAAGAACTAGTCTATTTTGTGCCTTGCAGATGTGTTGGCTCTTACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR CAA 90 bp TACTTTACAACGAAGACTAGAGAAGATTGCATAACTTACATGAGGTaGCATAGGCGGTGTCAGAGCTGGGATCAGAGCAAAGCAGTTTGG +
Preference number: 2 (lower is better)
Translates to: YFTTKTREDCITYMR*HRRCQSWDQSKAVW
Trigger: CCAAACTGCTTTGCTCTGATCCCAGCTCTGACACCGCCTATGCAACCTCATGTAAGTTATGCAATCTTCTCTAGTCTTCGTTGTAAAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR TCA 90 bp GCTTCGCTATCTCCTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCATAGATGGTGGTGTCTaGGGGTTTCACTTTCTCTGC +
Preference number: 2 (lower is better)
Translates to: ASLSPRFRMCSGGKIKLFIDGGV*GFHFLC
Trigger: GCAGAGAAAGTGAAACCCTCAGACACCACCATCTAT...GAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAGGAGATAGCGAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR GCA 90 bp ATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAACAACTGAAATGTCCCTCCTGTaGCTTCTATGCACTTATTCC +
Preference number: 2 (lower is better)
Translates to: MILGTHSSWHVCESERTTEMSLL*LLCTYS
Trigger: GGAATAAGTGCATAGAAGGCACAGGAGGGACATTTC...AGTTGTTCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR GCA 90 bp AATAGATGTCCTTTCTCTAATGGGTATGGAATCATTCTAAAAGTGCCTTCCCATCCTGTCACTGGAGCTTaGAGCGTGTCAGGTAGCTTT +
Preference number: 2 (lower is better)
Translates to: NRCPFSNGYGIILKVPSHPVTGA*SVSGSF
Trigger: AAAGCTACCTGACACGCTGCAAGCTCCAGTGACAGG...ATGGGAAGGCACTTTTAGAATGATTCCATACCCATTAGAGAAAGGACATCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR GCA 90 bp AAATACTCCACACAAGTCCTGGAGATCATACTCACAGCTTTAGCAAAAACACCCAGATGTCCCTGTAAGTaGCACATAGAACTTGGGTGT +
Preference number: 2 (lower is better)
Translates to: KYSTQVLEIILTALAKTPRCPCK*HIELGC
Trigger: ACACCCAAGTTCTATGTGGCACTTACAGGGACATCT...GGGTGTTTTTGCTAAAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGTATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CCA 90 bp ATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAACAACTTTGCATTCTGATAGATaGTGGTGTCTGAGGGTTTCA +
Preference number: 2 (lower is better)
Translates to: MILGTHSSWHVCESERTTLHSDR*WCLRVS
Trigger: TGAAACCCTCAGACACCACCATCTATCAGAATGCAA...AGTTGTTCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp ATCATTCTAAAAGTGCCTTCCCATGTACACTGCAGGAGATTCAGAGCACCTTCTTGGAGAGAATTTATCTaGGACGGTTCTTGTTTTCAG +
Preference number: 2 (lower is better)
Translates to: IILKVPSHVHCRRFRAPSWREFI*DGSCFQ
Trigger: CTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCA...AGAAGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGGCACTTTTAGAATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR GCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGGAAATGTCCCTCCTGTaGCTTCTATGCACTTATTCC +
Preference number: 2 (lower is better)
Translates to: VKVITKFPFPIRREWNSQEMSLL*LLCTYS
Trigger: GGAATAAGTGCATAGAAGGCACAGGAGGGACATTTC...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CCA 90 bp GCTTCGCTATCTCCTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCCATTCTGATAGATGGTaGTGTCTGAGGGTTTCACTT +
Preference number: 2 (lower is better)
Translates to: ASLSPRFRMCSGGKIKLFHSDRW*CLRVSL
Trigger: AAGTGAAACCCTCAGACACCACCATCTATCAGAATG...GAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAGGAGATAGCGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CCA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTTGCTTTGATTCGAGCTaGAGGATTTCTTTCCCTCCA +
Preference number: 2 (lower is better)
Translates to: REQLSKLGSLPPLYEFELCFDSS*RISFPP
Trigger: TGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCA...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp TCTCCTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCATCTCTAGTAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCT +
Preference number: 2 (lower is better)
Translates to: SPRFRMCSGGKIKLFISSSLFHR*KRSGDP
Trigger: AGGATCACCAGACCTTTTTCACCTGTGAAACAGACT...ACTAGAGATGAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAGGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR TCA 90 bp TCTCCTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCATCTCTAGTTGCTTAACCCTTTTCTaGAGGCTGTTTCTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: SPRFRMCSGGKIKLFISSCLTLF*RLFLER
Trigger: TCTCTCCAGAAACAGCCTTCAGAAAAGGGTTAAGCA...ACTAGAGATGAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAGGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000183914.8
ENSMUST00000199335.2
3UTR-3UTR GCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGTATGATGATTGTGTTTaGATGATCCTGGGGACACAT +
Preference number: 2 (lower is better)
Translates to: VKVITKFPFPIRREWNSQYDDCV*MILGTH
Trigger: ATGTGTCCCCAGGATCATGCAAACACAATCATCATA...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR GCA 90 bp GTTTATAAATACTCCACACAAGTCCTGGAGATCATACTCACAGCTTTAGCAAAAGAAAGCATAGGCAATTaGTTCGCTATCTCCTCGCTT +
Preference number: 2 (lower is better)
Translates to: VYKYSTQVLEIILTALAKESIGN*FAISSL
Trigger: AAGCGAGGAGATAGCGAAGCAATTGCCTATGCTTTC...TTTTGCTAAAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGTATTTATAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CCA 90 bp CTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCATCTCTAGTAAGTGATGTACCATGCTTATaGAAGTACCACCATTCAAAT +
Preference number: 2 (lower is better)
Translates to: LASECVLEVRLNFSSLVSDVPCL*KYHHSN
Trigger: ATTTGAATGGTGGTACTTCCATAAGCATGGTACATC...ACTTACTAGAGATGAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CAA 90 bp ATAATATCCACTTACTTCTTACTGTGGAGGAATAGTTCTACACAGTaGATATACGTTAAACACATTTACCCCAACAACACCTATGTAGCA +
Preference number: 2 (lower is better)
Translates to: IISTYFLLWRNSSTQ*IYVKHIYPNNTYVA
Trigger: TGCTACATAGGTGTTGTTGGGGTAAATGTGTTTAACGTATATCAACTGTGTAGAACTATTCCTCCACAGTAAGAAGTAAGTGGATATTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CAA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTCACTTTCTCTGCTGTaGGCAGGAGAGCCCGGCTCT +
Preference number: 3 (lower is better)
Translates to: VFRCSCGLALADERCFPASLSLL*AGEPGS
Trigger: AGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR GCA 72 bp GCAGGGCAGCCACTTCTCCAGCCCGATAAGGCAGCATaGTATCCTGGTGTTCCAATTCCTCGCATTGGTGGC +
Preference number: 3 (lower is better)
Translates to: AGQPLLQPDKAA*YPGVPIPRIGG
Trigger: GCCACCAATGCGAGGAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR GCA 72 bp CAGCTCTTGCCGTCTACAAGTGTCTTCCGCTGCTCGTaGGGGTTAGCACTGGCAGATGAGAGATGCTTTCCT +
Preference number: 3 (lower is better)
Translates to: QLLPSTSVFRCS*GLALADERCFP
Trigger: AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACTTGTAGACGGCAAGAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR CAA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTCACATCACCAGAGCTaGTGTTTGACACAGTCATGG +
Preference number: 3 (lower is better)
Translates to: VFRCSCGLALADERCFPASHHQS*CLTQSW
Trigger: CCATGACTGTGTCAAACACAAGCTCTGGTGATGTGA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR-3UTR CAA 90 bp CGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCTGGTTTCACATCACCAGAGCTaGTGTTTGACACAGTCATGG +
Preference number: 3 (lower is better)
Translates to: RCSCGLALADERCFPALVSHHQS*CLTQSW
Trigger: CCATGACTGTGTCAAACACAAGCTCTGGTGATGTGA...AACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CAA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTGGATCAGGCTGTTCTaGAACTCAATAGAGATCCCC +
Preference number: 3 (lower is better)
Translates to: VFRCSCGLALADERCFPAWIRLF*NSIEIP
Trigger: GGGGATCTCTATTGAGTTCAAGAACAGCCTGATCCA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR GCA 72 bp TTTCTCTGCTGTTGGCAGGAGAGCCCGGCTCTGAAATaGTACTCTCTGTTCCTCCCATCAGTGGCCGCAAAT +
Preference number: 3 (lower is better)
Translates to: FLCCWQESPALK*YSLFLPSVAAN
Trigger: ATTTGCGGCCACTGATGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CAA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCCTCCCTGAGCAGCAGTaGGAAGTCATTTGTCTTGGA +
Preference number: 3 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFLPEQQ*EVICLG
Trigger: TCCAAGACAAATGACTTCCAACTGCTGCTCAGGGAG...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CAA 90 bp CTGCAGCGAAGCCTGAGCCGATCCTTTCTTAACATGCTCCTACAAGAGGGTGGTTTGACTGCTCCATCTTaGTTGCAGATTGCAGACCTG +
Preference number: 3 (lower is better)
Translates to: LQRSLSRSFLNMLLQEGGLTAPS*LQIADL
Trigger: CAGGTCTGCAATCTGCAACAAAGATGGAGCAGTCAA...ACCACCCTCTTGTAGGAGCATGTTAAGAAAGGATCGGCTCAGGCTTCGCTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR GCA 72 bp CGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATaGTTTCCTGCGCTGGTTTATAAATACTCCACACAA +
Preference number: 3 (lower is better)
Translates to: RCSCGLALADER*FPALVYKYSTQ
Trigger: TTGTGTGGAGTATTTATAAACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR TCA 72 bp TTCTCCAGACCTTGCATTCTGATAGATGGTGGTGTCTaGGGGTTTCACTTTCTCTGCTGTTGGCAGGAGAGC +
Preference number: 3 (lower is better)
Translates to: FSRPCILIDGGV*GFHFLCCWQES
Trigger: GCTCTCCTGCCAACAGCAGAGAAAGTGAAACCCTCAGACACCACCATCTATCAGAATGCAAGGTCTGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR GCA 72 bp GGTGTCAGTGAACTTAAAAACCCTGTCACTGGAGCTTaGAGCGTGTCAGGTAGCTTTTCCTGTGGTAGCGTA +
Preference number: 3 (lower is better)
Translates to: GVSELKNPVTGA*SVSGSFSCGSV
Trigger: TACGCTACCACAGGAAAAGCTACCTGACACGCTGCAAGCTCCAGTGACAGGGTTTTTAAGTTCACTGACACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CAA 90 bp CTCCCAAGTGCTGGGATTAAAGGCATGCAACACCATGGCCTGGCTCAGAATAAATCACATCACCAGAGCTaGTGTTTGACACAGTCATGG +
Preference number: 3 (lower is better)
Translates to: LPSAGIKGMQHHGLAQNKSHHQS*CLTQSW
Trigger: CCATGACTGTGTCAAACACAAGCTCTGGTGATGTGA...TTTATTCTGAGCCAGGCCATGGTGTTGCATGCCTTTAATCCCAGCACTTGGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR TCA 72 bp AGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTaGAATGTCCCTCCTGTGCCTTCTATGCACTTATTC +
Preference number: 3 (lower is better)
Translates to: RTFEPRSTCHAW*NVPPVPSMHLF
Trigger: GAATAAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR TCA 72 bp GCTTTAGCAAAAACACCCATGACTTCAGGAAACTGGTaGGTGAGAAACGCTAGCATTGCGGTAGAGGAGCAC +
Preference number: 3 (lower is better)
Translates to: ALAKTPMTSGNW*VRNASIAVEEH
Trigger: GTGCTCCTCTACCGCAATGCTAGCGTTTCTCACTCACCAGTTTCCTGAAGTCATGGGTGTTTTTGCTAAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CCA 72 bp GTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATaGAATAGTCAGTCTGCAACCCACACACCCACACTC +
Preference number: 3 (lower is better)
Translates to: VITKFPFPIRRE*NSQSATHTPTL
Trigger: GAGTGTGGGTGTGTGGGTTGCAGACTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR TCA 72 bp CCCTTTTTGGTCCATTTGTCCATGCCTCTCACACAGTaGGGTCATGTTAGTCTGAGACACACTTATTCCCCA +
Preference number: 3 (lower is better)
Translates to: PFLVHLSMPLTQ*GHVSLRHTYSP
Trigger: TGGGGAATAAGTGTGTCTCAGACTAACATGACCTCACTGTGTGAGAGGCATGGACAAATGGACCAAAAAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR CCA 72 bp ATCTCTCTCGTTGCCTGTCTGGATCGTTCATATATGTaGGTTAAGTGCCTCCCCACTTCTTTTCTTCCTCTC +
Preference number: 3 (lower is better)
Translates to: ISLVACLDRSYM*VKCLPTSFLPL
Trigger: GAGAGGAAGAAAAGAAGTGGGGAGGCACTTAACCCACATATATGAACGATCCAGACAGGCAACGAGAGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CAA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATAAACTAGGAGAACCTTaGAGCCAAGAAGCACATGCC +
Preference number: 3 (lower is better)
Translates to: SELQNSQGYTEKSCLKINKLGEP*SQEAHA
Trigger: GGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTT...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR TCA 72 bp CTGTGTCTGAAGGACGTAAAAAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCTGGGCAGACAAGTTCA +
Preference number: 3 (lower is better)
Translates to: LCLKDVKSLFHR*KRSGDPGQTSS
Trigger: TGAACTTGTCTGCCCAGGATCACCAGACCTTTTTCACCTGTGAAACAGACTTTTTACGTCCTTCAGACACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CCA 72 bp CAAGTGCTGGGATTAAAGGCATGCAACACCATGGCCTaGCTCAGAATAAACTATTCTCATGCCAGGAAAAGA +
Preference number: 3 (lower is better)
Translates to: QVLGLKACNTMA*LRINYSHARKR
Trigger: TCTTTTCCTGGCATGAGAATAGTTTATTCTGAGCCAGGCCATGGTGTTGCATGCCTTTAATCCCAGCACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR CCA 72 bp GAAAAATTCAAGAACCCATCTCTCTCGTTGCCTGTCTaGATCGTTCATATATGTGGGTTAAGTGCCTCCCCA +
Preference number: 3 (lower is better)
Translates to: EKFKNPSLSLPV*IVHICGLSASP
Trigger: TGGGGAGGCACTTAACCCACATATATGAACGATCCAGACAGGCAACGAGAGAGATGGGTTCTTGAATTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CAA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTAAACTAGGAGAACCTTaGAGCCAAGAAGCACATGCC +
Preference number: 3 (lower is better)
Translates to: REQLSKLGSLPPLYEFELKLGEP*SQEAHA
Trigger: GGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTT...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR GCA 72 bp CTGTTAGCTAGAACTTCAGGGAAATACACTATTGACTaGTCCATCTTTGTTGCAGATTGCAGACCTGCTCTA +
Preference number: 3 (lower is better)
Translates to: LLARTSGKYTID*SIFVADCRPAL
Trigger: TAGAGCAGGTCTGCAATCTGCAACAAAGATGGAGCAGTCAATAGTGTATTTCCCTGAAGTTCTAGCTAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR GCA 72 bp GGTGAAAAACTAGAAAAGGAGCCTCCAGTTCCTTGTTaGATGTCTTCTGTGGAAGCATTTAAGTGTTGCACA +
Preference number: 3 (lower is better)
Translates to: GEKLEKEPPVPC*MSSVEAFKCCT
Trigger: TGTGCAACACTTAAATGCTTCCACAGAAGACATGCAACAAGGAACTGGAGGCTCCTTTTCTAGTTTTTCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR GCA 72 bp TATGGAATCATTCTAAAAGTGCCTTCCCATGTACACTaGAGGAGATTCAGAGCACCTTCTATTCGTTTCCAG +
Preference number: 3 (lower is better)
Translates to: YGIILKVPSHVH*RRFRAPSIRFQ
Trigger: CTGGAAACGAATAGAAGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGGCACTTTTAGAATGATTCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CAA 90 bp GTTTGCATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAATGGCTTATGGACACTaGTTCAATAAAAGATGTACC +
Preference number: 3 (lower is better)
Translates to: VCMILGTHSSWHVCESERMAYGH*FNKRCT
Trigger: GGTACATCTTTTATTGAACAAGTGTCCATAAGCCAT...TCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCATGCAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR-3UTR CAA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTCAGGGAAATACACTATaGACTGCTCCATCTTTGTTG +
Preference number: 3 (lower is better)
Translates to: REQLSKLGSLPPLYEFELQGNTL*TAPSLL
Trigger: CAACAAAGATGGAGCAGTCAATAGTGTATTTCCCTG...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR-3UTR CAA 90 bp GTTTATAAATACTCCACACAAGTCCTGGAGATCATACTCACAGCTTTAGCAAAACAGCATCTACAATGGTaGTTGCTTCTTCTTCGGCCA +
Preference number: 3 (lower is better)
Translates to: VYKYSTQVLEIILTALAKQHLQW*LLLLRP
Trigger: TGGCCGAAGAAGAAGCAACAACCATTGTAGATGCTG...TTTTGCTAAAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGTATTTATAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR GCA 72 bp ACTATTTCTTACTTTACAACGAAGACTAGAGAAGATTaGATAACTTACATGAGGTTGCATAGGCGGTGTCAG +
Preference number: 3 (lower is better)
Translates to: TISYFTTKTRED*ITYMRLHRRCQ
Trigger: CTGACACCGCCTATGCAACCTCATGTAAGTTATGCAATCTTCTCTAGTCTTCGTTGTAAAGTAAGAAATAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR TCA 72 bp CTTACTTCTTACTGTGGAGGAATAGTTCTACACAGTTaGTATACGTTAAACACATTTACCCCAACAACACCT +
Preference number: 3 (lower is better)
Translates to: LTSYCGGIVLHS*YTLNTFTPTTP
Trigger: AGGTGTTGTTGGGGTAAATGTGTTTAACGTATATCAACTGTGTAGAACTATTCCTCCACAGTAAGAAGTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCCAGGAACAGGTGCATaGGGACACCCCACGGCCCGC +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAPGTGA*GHPTAR
Trigger: GCGGGCCGTGGGGTGTCCCCATGCACCTGTTCCTGG...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGCAAGCCAGGAACAGGTaGATGGGGACACCCCACGGC +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAQARNR*MGTPHG
Trigger: GCCGTGGGGTGTCCCCATGCACCTGTTCCTGGCTTG...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGCCAAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCCAAGCCAGGAACAGGTaGATGGGGACACCCCACGGC +
Preference number: 4 (lower is better)
Translates to: SQEAHATHGEMSLLCLLCQARNR*MGTPHG
Trigger: GCCGTGGGGTGTCCCCATGCACCTGTTCCTGGCTTG...GCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTAGGAGAGCCCGGCTCTaGAATGCTACTCTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPRRARL*NATLCS
Trigger: GGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGGTGAAAAAGGTCTGGTaGTCCTGGGCAGACAAGTTC +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAVKKVW*SWADKF
Trigger: GAACTTGTCTGCCCAGGATCACCAGACCTTTTTCAC...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTCAGGAAACTGGTGAGTaGGAAACGCTAGCATTGCGG +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPQETGE*ETLALR
Trigger: CCGCAATGCTAGCGTTTCTCACTCACCAGTTTCCTG...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTAGCCCGGCTCTGAAATaGTACTCTCTGTTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPSPALK*YSLFLP
Trigger: TGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
3UTR CAA 72 bp GCTGGGATCAGAGCAAAGCAGTTTGGTTCCAGAGTCTaGCTCATAAGCACTCTGCAGGGCAGCCACTTCTCC +
Preference number: 4 (lower is better)
Translates to: AGIRAKQFGSRV*LISTLQGSHFS
Trigger: GGAGAAGTGGCTGCCCTGCAGAGTGCTTATGAGCAAGACTCTGGAACCAAACTGCTTTGCTCTGATCCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR TCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCGTGAAAAAGGTCTGGTaGTCCTGGGCAGACAAGTTC +
Preference number: 4 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFVKKVW*SWADKF
Trigger: GAACTTGTCTGCCCAGGATCACCAGACCTTTTTCAC...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR TCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTGCTTAACCCTTTTCTaGAGGCTGTTTCTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPACLTLF*RLFLER
Trigger: TCTCTCCAGAAACAGCCTTCAGAAAAGGGTTAAGCA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGGGTTTCTCCAGACCTTaGATTCTGATAGATGGTGGT +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAGFSRP*ILIDGG
Trigger: ACCACCATCTATCAGAATGCAAGGTCTGGAGAAACC...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTCCTTCCCATGTACACTaGAGGAGATTCAGAGCACCT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPPSHVH*RRFRAP
Trigger: AGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGG...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTATCAGCAGTCTCTGTaGAGCTGGGATAAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAYQQSL*SWDKGK
Trigger: TTTACCCTTATCCCAGCTGCACAGAGACTGCTGATA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTGTTCCTCCCATCAGTaGCCGCAAATGGCTTATGGA +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPCSSHQ*PQMAYG
Trigger: TCCATAAGCCATTTGCGGCCACTGATGGGAGGAACA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGACTCCACACAAGTCCTaGAGATCATACTCACAGCTT +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPATPHKS*RSYSQL
Trigger: AAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGT...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
3UTR CAA 72 bp AGATGGTGGTGTCTGAGGGTTTCACTTTCTCTGCTGTaGGCAGGAGAGCCCGGCTCTGAAATGCTACTCTCT +
Preference number: 4 (lower is better)
Translates to: RWWCLRVSLSLL*AGEPGSEMLLS
Trigger: AGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCCTCAGACACCACCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTATAGATGGTGGTGTCTaGGGGTTTCACTTTCTCTGC +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPIDGGV*GFHFLC
Trigger: GCAGAGAAAGTGAAACCCTCAGACACCACCATCTAT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp CTGACACACAGTCTATACTTAAGGCCAGAACCTGAAAGGGTCAATGAAAGGATGCAAGCCAGGAACAGGTaGATGGGGACACCCCACGGC +
Preference number: 4 (lower is better)
Translates to: LTHSLYLRPEPERVNERMQARNR*MGTPHG
Trigger: GCCGTGGGGTGTCCCCATGCACCTGTTCCTGGCTTG...CATCCTTTCATTGACCCTTTCAGGTTCTGGCCTTAAGTATAGACTGTGTGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTGGGTTTCACTTTCTCTaGTGTTGGCAGGAGAGCCCG +
Preference number: 4 (lower is better)
Translates to: KKHMPRMVKCPSCAFYALGFHFL*CWQESP
Trigger: CGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCC...AAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTCCCTCCATGCCTTCTaGATAACTGTGTCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPSLHAF*ITVSEG
Trigger: TCCTTCAGACACAGTTATGCAGAAGGCATGGAGGGA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTCTCTCCTGCCCTGAGTaGCTGTTTAAACAACCTTTC +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPLSCPE*LFKQPF
Trigger: GAAAGGTTGTTTAAACAGGCACTCAGGGCAGGAGAG...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR CCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGCCAGGAACAGGTGCATaGGGACACCCCACGGCCCGC +
Preference number: 4 (lower is better)
Translates to: VKVITKFPFPIRREWNSQPGTGA*GHPTAR
Trigger: GCGGGCCGTGGGGTGTCCCCATGCACCTGTTCCTGG...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp AAGGCTGTTTCTGGAGAGAATTTATCTGAGACGGTTCTTGTTTTCAGTAGTGCTCCAGGAACAGGTGCATaGGGACACCCCACGGCCCGC +
Preference number: 4 (lower is better)
Translates to: KAVSGENLSETVLVFSSAPGTGA*GHPTAR
Trigger: GCGGGCCGTGGGGTGTCCCCATGCACCTGTTCCTGG...AGCACTACTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCAGAAACAGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS-3UTR CCA 90 bp GAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTACCAGGAACAGGTGCATaGGGACACCCCACGGCCCGC +
Preference number: 4 (lower is better)
Translates to: ENNFLNLALSHPYMSSNLPGTGA*GHPTAR
Trigger: GCGGGCCGTGGGGTGTCCCCATGCACCTGTTCCTGG...TAAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp AGCCAAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCTGTTCCTCCCATCAGTaGCCGCAAATGGCTTATGGA +
Preference number: 4 (lower is better)
Translates to: SQEAHATHGEMSLLCLLCCSSHQ*PQMAYG
Trigger: TCCATAAGCCATTTGCGGCCACTGATGGGAGGAACA...GCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTTGCATTCTGATAGATaGTGGTGTCTGAGGGTTTCA +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPALHSDR*WCLRVS
Trigger: TGAAACCCTCAGACACCACCATCTATCAGAATGCAA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCAGGAGAGCCCGGCTCTaGAATGCTACTCTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPRRARL*NATLCS
Trigger: GGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCT...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPSLFHR*KRSGDP
Trigger: AGGATCACCAGACCTTTTTCACCTGTGAAACAGACT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTGGAGAGAATTTATCTaGGACGGTTCTTGTTTTCAG +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAWREFI*DGSCFQ
Trigger: CTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTGCTTAACCCTTTTCTaGAGGCTGTTTCTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPCLTLF*RLFLER
Trigger: TCTCTCCAGAAACAGCCTTCAGAAAAGGGTTAAGCA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTACTTCAGGAAACTGGTaGGTGAGAAACGCTAGCATT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPTSGNW*VRNASI
Trigger: AATGCTAGCGTTTCTCACTCACCAGTTTCCTGAAGT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTAGATGTCCCTGTAAGTaGCACATAGAACTTGGGTGT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPRCPCK*HIELGC
Trigger: ACACCCAAGTTCTATGTGGCACTTACAGGGACATCT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGGATGCAAAAACTAGGAGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTGGGTTTCACTTTCTCTaGTGTTGGCAGGAGAGCCCG +
Preference number: 4 (lower is better)
Translates to: RMQKLGEPLSQEAHATHGGFHFL*CWQESP
Trigger: CGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCC...ACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTTTGCATCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTGCTTTGATTCGAGCTaGAGGATTTCTTTCCCTCCA +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPCFDSS*RISFPP
Trigger: TGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGTAGGACGTAGGCAGTaGCACAGTCATTGTTTAACT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPVGRRQ*HSHCLT
Trigger: AGTTAAACAATGACTGTGCCACTGCCTACGTCCTAC...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTACTCCACACAAGTCCTaGAGATCATACTCACAGCTT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPTPHKS*RSYSQL
Trigger: AAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGGATGCAAAAACTAGGAGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTCAGGAAACTGGTGAGTaGGAAACGCTAGCATTGCGG +
Preference number: 4 (lower is better)
Translates to: RMQKLGEPLSQEAHATHGQETGE*ETLALR
Trigger: CCGCAATGCTAGCGTTTCTCACTCACCAGTTTCCTG...ACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTTTGCATCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp GAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTACAAGCCAGGAACAGGTaGATGGGGACACCCCACGGC +
Preference number: 4 (lower is better)
Translates to: ENNFLNLALSHPYMSSNLQARNR*MGTPHG
Trigger: GCCGTGGGGTGTCCCCATGCACCTGTTCCTGGCTTG...TAAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTATTTCTTTCCCTCCATaGCTTCTGCATAACTGTGTC +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPISFPP*LLHNCV
Trigger: GACACAGTTATGCAGAAGGCATGGAGGGAAAGAAAT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR GCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGATAAATTATCTCTCCTaGCCTGAGTGCCTGTTTAAA +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPAINYLS*PECLFK
Trigger: TTTAAACAGGCACTCAGGGCAGGAGAGATAATTTAT...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR GCA 90 bp AGCCAAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCGAAAGCATAGGCAATTaGTTCGCTATCTCCTCGCTT +
Preference number: 4 (lower is better)
Translates to: SQEAHATHGEMSLLCLLCESIGN*FAISSL
Trigger: AAGCGAGGAGATAGCGAAGCAATTGCCTATGCTTTC...GCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp GAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTATCCTTCCCATGTACACTaGAGGAGATTCAGAGCACCT +
Preference number: 4 (lower is better)
Translates to: EAHATHGEMSLLCLLCTYPSHVH*RRFRAP
Trigger: AGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGG...ATAAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGGATGTACCATGCTTATaGAAGTACCACCATTCAAAT +
Preference number: 4 (lower is better)
Translates to: VFRCSCGLALADERCFPADVPCL*KYHHSN
Trigger: ATTTGAATGGTGGTACTTCCATAAGCATGGTACATC...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTCATTCTGATAGATGGTaGTGTCTGAGGGTTTCACTT +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPHSDRW*CLRVSL
Trigger: AAGTGAAACCCTCAGACACCACCATCTATCAGAATG...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTATAGATGGTGGTGTCTaGGGGTTTCACTTTCTCTGC +
Preference number: 4 (lower is better)
Translates to: KKHMPRMVKCPSCAFYALIDGGV*GFHFLC
Trigger: GCAGAGAAAGTGAAACCCTCAGACACCACCATCTAT...AAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTGGAGAGAATTTATCTaGGACGGTTCTTGTTTTCAG +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPWREFI*DGSCFQ
Trigger: CTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTGTTCCTCCCATCAGTaGCCGCAAATGGCTTATGGA +
Preference number: 4 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPCSSHQ*PQMAYG
Trigger: TCCATAAGCCATTTGCGGCCACTGATGGGAGGAACA...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp CTGCAGCGAAGCCTGAGCCGATCCTTTCTTAACATGCTCCTACAAGAGGGTGGTCATTCTGATAGATGGTaGTGTCTGAGGGTTTCACTT +
Preference number: 4 (lower is better)
Translates to: LQRSLSRSFLNMLLQEGGHSDRW*CLRVSL
Trigger: AAGTGAAACCCTCAGACACCACCATCTATCAGAATG...ACCACCCTCTTGTAGGAGCATGTTAAGAAAGGATCGGCTCAGGCTTCGCTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTATACACAAGTACATTaGTATCTCGCCTCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPYTQVH*YLASVE
Trigger: CTCAACTGAGGCGAGATACCAATGTACTTGTGTATA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR TCA 90 bp GTTTGCATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAGTGAAAAAGGTCTGGTaGTCCTGGGCAGACAAGTTC +
Preference number: 4 (lower is better)
Translates to: VCMILGTHSSWHVCESERVKKVW*SWADKF
Trigger: GAACTTGTCTGCCCAGGATCACCAGACCTTTTTCAC...TCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCATGCAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp GAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTATTGCTTAACCCTTTTCTaGAGGCTGTTTCTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: EAHATHGEMSLLCLLCTYCLTLF*RLFLER
Trigger: TCTCTCCAGAAACAGCCTTCAGAAAAGGGTTAAGCA...ATAAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp ATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAACAACTCAGGAAACTGGTGAGTaGGAAACGCTAGCATTGCGG +
Preference number: 4 (lower is better)
Translates to: MILGTHSSWHVCESERTTQETGE*ETLALR
Trigger: CCGCAATGCTAGCGTTTCTCACTCACCAGTTTCCTG...AGTTGTTCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATAGCCCGGCTCTGAAATaGTACTCTCTGTTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: SELQNSQGYTEKSCLKINSPALK*YSLFLP
Trigger: TGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCT...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp GAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTATGGTTTCTCCAGACCTTaGATTCTGATAGATGGTGGT +
Preference number: 4 (lower is better)
Translates to: EAHATHGEMSLLCLLCTYGFSRP*ILIDGG
Trigger: ACCACCATCTATCAGAATGCAAGGTCTGGAGAAACC...ATAAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGGATGCAAAAACTAGGAGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTTCCCTCCATGCCTTCTaGATAACTGTGTCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: RMQKLGEPLSQEAHATHGSLHAF*ITVSEG
Trigger: TCCTTCAGACACAGTTATGCAGAAGGCATGGAGGGA...ACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTTTGCATCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR GCA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCATAAATTATCTCTCCTaGCCTGAGTGCCTGTTTAAA +
Preference number: 4 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFINYLS*PECLFK
Trigger: TTTAAACAGGCACTCAGGGCAGGAGAGATAATTTAT...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR GCA 90 bp CTCCCAAGTGCTGGGATTAAAGGCATGCAACACCATGGCCTGGCTCAGAATAAATATCAGCAGTCTCTGTaGAGCTGGGATAAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: LPSAGIKGMQHHGLAQNKYQQSL*SWDKGK
Trigger: TTTACCCTTATCCCAGCTGCACAGAGACTGCTGATA...TTTATTCTGAGCCAGGCCATGGTGTTGCATGCCTTTAATCCCAGCACTTGGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp GAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTATACTCCACACAAGTCCTaGAGATCATACTCACAGCTT +
Preference number: 4 (lower is better)
Translates to: EAHATHGEMSLLCLLCTYTPHKS*RSYSQL
Trigger: AAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGT...ATAAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGAGGAGAGCCCGGCTCTaGAATGCTACTCTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: VKVITKFPFPIRREWNSQRRARL*NATLCS
Trigger: GGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCT...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR TCA 90 bp AGGATGCAAAAACTAGGAGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCT +
Preference number: 4 (lower is better)
Translates to: RMQKLGEPLSQEAHATHGSLFHR*KRSGDP
Trigger: AGGATCACCAGACCTTTTTCACCTGTGAAACAGACT...ACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTTTGCATCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCT +
Preference number: 4 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPSLFHR*KRSGDP
Trigger: AGGATCACCAGACCTTTTTCACCTGTGAAACAGACT...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATCCTTCCCATGTACACTaGAGGAGATTCAGAGCACCT +
Preference number: 4 (lower is better)
Translates to: SELQNSQGYTEKSCLKINPSHVH*RRFRAP
Trigger: AGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGG...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp CTCCCAAGTGCTGGGATTAAAGGCATGCAACACCATGGCCTGGCTCAGAATAAATTGCATTCTGATAGATaGTGGTGTCTGAGGGTTTCA +
Preference number: 4 (lower is better)
Translates to: LPSAGIKGMQHHGLAQNKLHSDR*WCLRVS
Trigger: TGAAACCCTCAGACACCACCATCTATCAGAATGCAA...TTTATTCTGAGCCAGGCCATGGTGTTGCATGCCTTTAATCCCAGCACTTGGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTCGTTTCCAGTGTTTTaGAACATGAGGATTAAATTC +
Preference number: 4 (lower is better)
Translates to: SVFRCSCGLALADERCFPSFPVF*NMRIKF
Trigger: GAATTTAATCCTCATGTTCCAAAACACTGGAAACGA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106769.8
3UTR CAA 72 bp AGGCTGTTTCTGGAGAGAATTTATCTGAGACGGTTCTaGTTTTCAGTAGTGCTGCTGTGTAGCAGATGGCCG +
Preference number: 4 (lower is better)
Translates to: RLFLERIYLRRF*FSVVLLCSRWP
Trigger: CGGCCATCTGCTACACAGCAGCACTACTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCAGAAACAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000183914.8
ENSMUST00000199335.2
CDS-3UTR GCA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATACACCAATTTCCTTCTaGAAAGCCCTCCATGTCTCC +
Preference number: 4 (lower is better)
Translates to: SELQNSQGYTEKSCLKINTPISF*KALHVS
Trigger: GGAGACATGGAGGGCTTTGCAGAAGGAAATTGGTGT...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS-3UTR CCA 90 bp GTTTGCATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGATGCTTTGATTCGAGCTaGAGGATTTCTTTCCCTCCA +
Preference number: 4 (lower is better)
Translates to: VCMILGTHSSWHVCESERCFDSS*RISFPP
Trigger: TGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCA...TCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCATGCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp CTGACACACAGTCTATACTTAAGGCCAGAACCTGAAAGGGTCAATGAAAGGATGAGAATCTCTGATCTTTaGCACTTGTCCCCGACTGTC +
Preference number: 4 (lower is better)
Translates to: LTHSLYLRPEPERVNERMRISDL*HLSPTV
Trigger: GACAGTCGGGGACAAGTGCCAAAGATCAGAGATTCT...CATCCTTTCATTGACCCTTTCAGGTTCTGGCCTTAAGTATAGACTGTGTGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
3UTR CAA 72 bp AGGGTCAATGAAAGGATGCAAAAACTAGGAGAACCTTaGAGCCAAGAAGCACATGCCACGCATGGTGAAATG +
Preference number: 4 (lower is better)
Translates to: RVNERMQKLGEP*SQEAHATHGEM
Trigger: CATTTCACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTTTGCATCCTTTCATTGACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000183914.8
ENSMUST00000200132.5
3UTR CAA 72 bp CTTCAGGGAAATACACTATTGACTGCTCCATCTTTGTaGCAGATTGCAGACCTGCTCTATTTCTCCCCCTTC +
Preference number: 4 (lower is better)
Translates to: LQGNTLLTAPSL*QIADLLYFSPF
Trigger: GAAGGGGGAGAAATAGAGCAGGTCTGCAATCTGCAACAAAGATGGAGCAGTCAATAGTGTATTTCCCTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR CAA 72 bp GAACTTCAGGGAAATACACTATTGACTGCTCCATCTTaGTTGCAGATTGCAGACCTGCTCTATTTCTCCCCC +
Preference number: 4 (lower is better)
Translates to: ELQGNTLLTAPS*LQIADLLYFSP
Trigger: GGGGGAGAAATAGAGCAGGTCTGCAATCTGCAACAAAGATGGAGCAGTCAATAGTGTATTTCCCTGAAGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
3UTR CAA 72 bp ACGAAGACTAGAGAAGATTGCATAACTTACATGAGGTaGCATAGGCGGTGTCAGAGCTGGGATCAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: TKTREDCITYMR*HRRCQSWDQSK
Trigger: TTTGCTCTGATCCCAGCTCTGACACCGCCTATGCAACCTCATGTAAGTTATGCAATCTTCTCTAGTCTTCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR TCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTGGAGAGAATTTATCTaGGACGGTTCTTGTTTTCAG +
Preference number: 4 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPWREFI*DGSCFQ
Trigger: CTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCA...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR TCA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATACTTCAGGAAACTGGTaGGTGAGAAACGCTAGCATT +
Preference number: 4 (lower is better)
Translates to: SELQNSQGYTEKSCLKINTSGNW*VRNASI
Trigger: AATGCTAGCGTTTCTCACTCACCAGTTTCCTGAAGT...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp AAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTGATGTACCATGCTTATaGAAGTACCACCATTCAAAT +
Preference number: 4 (lower is better)
Translates to: KKHMPRMVKCPSCAFYALDVPCL*KYHHSN
Trigger: ATTTGAATGGTGGTACTTCCATAAGCATGGTACATC...AAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CCA 90 bp CTGACACACAGTCTATACTTAAGGCCAGAACCTGAAAGGGTCAATGAAAGGATGGTAGGACGTAGGCAGTaGCACAGTCATTGTTTAACT +
Preference number: 4 (lower is better)
Translates to: LTHSLYLRPEPERVNERMVGRRQ*HSHCLT
Trigger: AGTTAAACAATGACTGTGCCACTGCCTACGTCCTAC...CATCCTTTCATTGACCCTTTCAGGTTCTGGCCTTAAGTATAGACTGTGTGTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTATACACAAGTACATTaGTATCTCGCCTCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPYTQVH*YLASVE
Trigger: CTCAACTGAGGCGAGATACCAATGTACTTGTGTATA...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR GCA 90 bp GAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTACTCTCCTGCCCTGAGTaGCTGTTTAAACAACCTTTC +
Preference number: 4 (lower is better)
Translates to: ENNFLNLALSHPYMSSNLLSCPE*LFKQPF
Trigger: GAAAGGTTGTTTAAACAGGCACTCAGGGCAGGAGAG...TAAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR GCA 90 bp GCTTCGCTATCTCCTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCAAACCCACTGGAGCATaGAACACCAATTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: ASLSPRFRMCSGGKIKLFKPTGA*NTNFLL
Trigger: CAGAAGGAAATTGGTGTTGCATGCTCCAGTGGGTTT...GAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAGGAGATAGCGAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS-3UTR CCA 90 bp GTTTGCATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAGTGCCACATAGAACTTaGGTGTCAGTGAACTTAAAA +
Preference number: 4 (lower is better)
Translates to: VCMILGTHSSWHVCESERVPHRT*VSVNLK
Trigger: TTTTAAGTTCACTGACACCCAAGTTCTATGTGGCAC...TCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCATGCAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
3UTR CAA 72 bp CAACACATCTGCAAGGCACAAAATAGACTAGTTCTTTaGGGTTCTGTTGTTGTTGACCCCCTCACATCTCAA +
Preference number: 4 (lower is better)
Translates to: QHICKAQNRLVL*GSVVVDPLTSQ
Trigger: TTGAGATGTGAGGGGGTCAACAACAACAGAACCCAAAAGAACTAGTCTATTTTGTGCCTTGCAGATGTGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR TCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGACTTCAGGAAACTGGTaGGTGAGAAACGCTAGCATT +
Preference number: 4 (lower is better)
Translates to: VKVITKFPFPIRREWNSQTSGNW*VRNASI
Trigger: AATGCTAGCGTTTCTCACTCACCAGTTTCCTGAAGT...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR GCA 90 bp GTAAAAGTCATTACCAAGTTTCCTTTCCCCATTAGGAGGGAATGGAATAGTCAGGAAAGCATAGGCAATTaGTTCGCTATCTCCTCGCTT +
Preference number: 4 (lower is better)
Translates to: VKVITKFPFPIRREWNSQESIGN*FAISSL
Trigger: AAGCGAGGAGATAGCGAAGCAATTGCCTATGCTTTC...CTGACTATTCCATTCCCTCCTAATGGGGAAAGGAAACTTGGTAATGACTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR GCA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTTATCAGCAGTCTCTGTaGAGCTGGGATAAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: REQLSKLGSLPPLYEFELYQQSL*SWDKGK
Trigger: TTTACCCTTATCCCAGCTGCACAGAGACTGCTGATA...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR GCA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTATTTCTTTCCCTCCATaGCTTCTGCATAACTGTGTC +
Preference number: 4 (lower is better)
Translates to: REQLSKLGSLPPLYEFELISFPP*LLHNCV
Trigger: GACACAGTTATGCAGAAGGCATGGAGGGAAAGAAAT...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CCA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATGATGTACCATGCTTATaGAAGTACCACCATTCAAAT +
Preference number: 4 (lower is better)
Translates to: SELQNSQGYTEKSCLKINDVPCL*KYHHSN
Trigger: ATTTGAATGGTGGTACTTCCATAAGCATGGTACATC...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS GCA 90 bp CTCTTTCCAGCCCAGCGGCGGGCCCAGGCCCAAGCCAGGAACAGGTaGATGGGGACACCCCACGGCCCGCGCGGCTTCCGCGAAGTAGTC +
Preference number: 5 (lower is better)
Translates to: LFPAQRRAQAQARNR*MGTPHGPRGFREVV
Trigger: GACTACTTCGCGGAAGCCGCGCGGGCCGTGGGGTGTCCCCATGCACCTGTTCCTGGCTTGGGCCTGGGCCCGCCGCTGGGCTGGAAAGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000123876.6
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS CCA 90 bp CCCTCAGAGCGTAAAGCAGCCCCAGCCCCGCCAGGAACCACAGCGTaGACCCAGAGTTCGCCAACCCGGCCTTCAGCCGCTCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: PSERKAAPAPPGTTA*TQSSPTRPSAALSS
Trigger: GCTGGAAAGAGCGGCTGAAGGCCGGGTTGGCGAACTCTGGGTCCACGCTGTGGTTCCTGGCGGGGCTGGGGCTGCTTTACGCTCTGAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000123876.6
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS CCA 90 bp AGAATCTCTGATCTTTGGCACTTGTCCCCGACTGTCCGGGAGGTTTaGGCCTCTCACCCGCTGTCACGTTGTCACACAGCCTCAGCGGGA +
Preference number: 5 (lower is better)
Translates to: RISDLWHLSPTVREV*ASHPLSRCHTASAG
Trigger: TCCCGCTGAGGCTGTGTGACAACGTGACAGCGGGTGAGAGGCCCAAACCTCCCGGACAGTCGGGGACAAGTGCCAAAGATCAGAGATTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS-3UTR CAA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGGGTATCTCGCCTCAGTaGAGCTTCATGCTGAGGGCT +
Preference number: 5 (lower is better)
Translates to: VFRCSCGLALADERCFPAGISPQ*SFMLRA
Trigger: AGCCCTCAGCATGAAGCTCAACTGAGGCGAGATACC...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR CAA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCTCACTTTCTCTGCTGTaGGCAGGAGAGCCCGGCTCT +
Preference number: 5 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFSLSLL*AGEPGS
Trigger: AGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGA...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CAA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTTCACTTTCTCTGCTGTaGGCAGGAGAGCCCGGCTCT +
Preference number: 5 (lower is better)
Translates to: SVFRCSCGLALADERCFPSLSLL*AGEPGS
Trigger: AGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGA...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGGGGTTTCTCCAGACCTaGCATTCTGATAGATGGTGG +
Preference number: 5 (lower is better)
Translates to: VFRCSCGLALADERCFPAGFLQT*HSDRWW
Trigger: CCACCATCTATCAGAATGCAAGGTCTGGAGAAACCC...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp GGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCCTGGTGTTCCAATTCGGGTTTCTCCAGACCTaGCATTCTGATAGATGGTGG +
Preference number: 5 (lower is better)
Translates to: GSHFSSPIRQHAILVFQFGFLQT*HSDRWW
Trigger: CCACCATCTATCAGAATGCAAGGTCTGGAGAAACCC...GAATTGGAACACCAGGATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CAA 90 bp GTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTGCGTATCTGAGACGGTTCTaGTTTTCAGTAGTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: VFRCSCGLALADERCFPAYLRRF*FSVVLL
Trigger: CAGCAGCACTACTGAAAACAAGAACCGTCTCAGATA...CGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTCAGCATCTACAATGGTaGTTGCTTCTTCTTCGGCCA +
Preference number: 5 (lower is better)
Translates to: SVFRCSCGLALADERCFPQHLQW*LLLLRP
Trigger: TGGCCGAAGAAGAAGCAACAACCATTGTAGATGCTG...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR CAA 90 bp CTCCCAAGTGCTGGGATTAAAGGCATGCAACACCATGGCCTGGCTCAGAATAAAGGTATCTCGCCTCAGTaGAGCTTCATGCTGAGGGCT +
Preference number: 5 (lower is better)
Translates to: LPSAGIKGMQHHGLAQNKGISPQ*SFMLRA
Trigger: AGCCCTCAGCATGAAGCTCAACTGAGGCGAGATACC...TTTATTCTGAGCCAGGCCATGGTGTTGCATGCCTTTAATCCCAGCACTTGGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CAA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTCATCTACAATGGTTGTaGCTTCTTCTTCGGCCAGTA +
Preference number: 5 (lower is better)
Translates to: SVFRCSCGLALADERCFPHLQWL*LLLRPV
Trigger: TACTGGCCGAAGAAGAAGCAACAACCATTGTAGATG...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
CDS-3UTR CAA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTAGATGGCCGCTGACTTaGGAAGGCTTATATCATCAT +
Preference number: 5 (lower is better)
Translates to: SVFRCSCGLALADERCFPRWPLT*EGLYHH
Trigger: ATGATGATATAAGCCTTCCAAAGTCAGCGGCCATCT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp AGCCAAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCAGAAAGCATAGGCAATaGCTTCGCTATCTCCTCGCT +
Preference number: 5 (lower is better)
Translates to: SQEAHATHGEMSLLCLLCRKHRQ*LRYLLA
Trigger: AGCGAGGAGATAGCGAAGCAATTGCCTATGCTTTCT...GCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp CTCGCTTCAGAATGTGTTCTGGAGGTAAGATTAAACTTTTCATCTCTAGTAAGTGACTGTCCGGGAGGTTaGGGCCTCTCACCCGCTGTC +
Preference number: 5 (lower is better)
Translates to: LASECVLEVRLNFSSLVSDCPGG*GLSPAV
Trigger: GACAGCGGGTGAGAGGCCCAAACCTCCCGGACAGTC...ACTTACTAGAGATGAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS-3UTR CAA 90 bp ATAAGCACTCTGCAGGGCAGCCACTTCTCCAGCCCGATAAGGCAGCATGCTATCATGGCTTATGGACACTaGTTCAATAAAAGATGTACC +
Preference number: 5 (lower is better)
Translates to: ISTLQGSHFSSPIRQHAIMAYGH*FNKRCT
Trigger: GGTACATCTTTTATTGAACAAGTGTCCATAAGCCAT...GATAGCATGCTGCCTTATCGGGCTGGAGAAGTGGCTGCCCTGCAGAGTGCTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CAA 90 bp AGTGTCTTCCGCTGCTCGTGCGGGTTAGCACTGGCAGATGAGAGATGCTTTCCTATGGCTTATGGACACTaGTTCAATAAAAGATGTACC +
Preference number: 5 (lower is better)
Translates to: SVFRCSCGLALADERCFPMAYGH*FNKRCT
Trigger: GGTACATCTTTTATTGAACAAGTGTCCATAAGCCAT...AGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp CCATCTTTGTTGCAGATTGCAGACCTGCTCTATTTCTCCCCCTTCCTACTCCATCAGCATCTACAATGGTaGTTGCTTCTTCTTCGGCCA +
Preference number: 5 (lower is better)
Translates to: PSLLQIADLLYFSPFLLHQHLQW*LLLLRP
Trigger: TGGCCGAAGAAGAAGCAACAACCATTGTAGATGCTG...ATGGAGTAGGAAGGGGGAGAAATAGAGCAGGTCTGCAATCTGCAACAAAGATGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CAA 90 bp AAGAAGCACATGCCACGCATGGTGAAATGTCCCTCCTGTGCCTTCTATGCACTTAGATGGCCGCTGACTTaGGAAGGCTTATATCATCAT +
Preference number: 5 (lower is better)
Translates to: KKHMPRMVKCPSCAFYALRWPLT*EGLYHH
Trigger: ATGATGATATAAGCCTTCCAAAGTCAGCGGCCATCT...AAGTGCATAGAAGGCACAGGAGGGACATTTCACCATGCGTGGCATGTGCTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp GGCATGTGTGTGAAAGTGAGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCCATCTACAATGGTTGTaGCTTCTTCTTCGGCCAGTA +
Preference number: 5 (lower is better)
Translates to: GMCVKVREQLSKLGSLPPHLQWL*LLLRPV
Trigger: TACTGGCCGAAGAAGAAGCAACAACCATTGTAGATG...GGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCTCACTTTCACACACATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059271.13
CDS-3UTR CAA 90 bp AGGATGCAAAAACTAGGAGAACCTTTGAGCCAAGAAGCACATGCCACGCATGGTTATCTGAGACGGTTCTaGTTTTCAGTAGTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RMQKLGEPLSQEAHATHGYLRRF*FSVVLL
Trigger: CAGCAGCACTACTGAAAACAAGAACCGTCTCAGATA...ACCATGCGTGGCATGTGCTTCTTGGCTCAAAGGTTCTCCTAGTTTTTGCATCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp GTTTGCATGATCCTGGGGACACATTCATCATGGCATGTGTGTGAAAGTGAGAGAAGATGGCCGCTGACTTaGGAAGGCTTATATCATCAT +
Preference number: 5 (lower is better)
Translates to: VCMILGTHSSWHVCESERRWPLT*EGLYHH
Trigger: ATGATGATATAAGCCTTCCAAAGTCAGCGGCCATCT...TCTCTCACTTTCACACACATGCCATGATGAATGTGTCCCCAGGATCATGCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATTATCTGAGACGGTTCTaGTTTTCAGTAGTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SELQNSQGYTEKSCLKINYLRRF*FSVVLL
Trigger: CAGCAGCACTACTGAAAACAAGAACCGTCTCAGATA...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS TCA 90 bp AACTCCAAACTGTGTCTGAAGGACGTAAAAAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCTTCTGTATTCTGCTCCTCTGAAGAG +
Preference number: 5 (lower is better)
Translates to: NSKLCLKDVKSLFHR*KRSGDPSVFCSSEE
Trigger: CTCTTCAGAGGAGCAGAATACAGAAGGATCACCAGACCTTTTTCACCTGTGAAACAGACTTTTTACGTCCTTCAGACACAGTTTGGAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123876.6
CDS-3UTR CAA 90 bp AGAGAACAACTTTCTAAACTTGGCTCTCTCCCACCCTTATATGAGTTCGAACTTAGAAAGCATAGGCAATaGCTTCGCTATCTCCTCGCT +
Preference number: 5 (lower is better)
Translates to: REQLSKLGSLPPLYEFELRKHRQ*LRYLLA
Trigger: AGCGAGGAGATAGCGAAGCAATTGCCTATGCTTTCT...AAGTTCGAACTCATATAAGGGTGGGAGAGAGCCAAGTTTAGAAAGTTGTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS-3UTR CAA 90 bp AGTGAGCTCCAGAACAGCCAGGGCTACACAGAGAAATCTTGCCTCAAAATAAATATGGCTTATGGACACTaGTTCAATAAAAGATGTACC +
Preference number: 5 (lower is better)
Translates to: SELQNSQGYTEKSCLKINMAYGH*FNKRCT
Trigger: GGTACATCTTTTATTGAACAAGTGTCCATAAGCCAT...ATTTATTTTGAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTCTGGAGCTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059271.13
ENSMUST00000200132.5
CDS CCA 72 bp CGTAAAGCAGCCCCAGCCCCGCCAGGAACCACAGCGTaGACCCAGAGTTCGCCAACCCGGCCTTCAGCCGCT +
Preference number: 6 (lower is better)
Translates to: RKAAPAPPGTTA*TQSSPTRPSAA
Trigger: AGCGGCTGAAGGCCGGGTTGGCGAACTCTGGGTCCACGCTGTGGTTCCTGGCGGGGCTGGGGCTGCTTTACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000059271.13
ENSMUST00000106769.8
ENSMUST00000123876.6
ENSMUST00000183914.8
ENSMUST00000200132.5
CDS CCA 72 bp GATCTTTGGCACTTGTCCCCGACTGTCCGGGAGGTTTaGGCCTCTCACCCGCTGTCACGTTGTCACACAGCC +
Preference number: 6 (lower is better)
Translates to: DLWHLSPTVREV*ASHPLSRCHTA
Trigger: GGCTGTGTGACAACGTGACAGCGGGTGAGAGGCCCAAACCTCCCGGACAGTCGGGGACAAGTGCCAAAGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS CAA 90 bp TGCAAAGCCCTCCATGTCTCCCCGAGAATCTCTGATCTTTGGCACTaGTCCCCGACTGTCCGGGAGGTTTGGGCCTCTCACCCGCTGTCA +
Preference number: 6 (lower is better)
Translates to: CKALHVSPRISDLWH*SPTVREVWASHPLS
Trigger: TGACAGCGGGTGAGAGGCCCAAACCTCCCGGACAGTCGGGGACAAGTGCCAAAGATCAGAGATTCTCGGGGAGACATGGAGGGCTTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS GCA 72 bp GGTGGCCCAAGCGACAAAAATAAACCCACTGGAGCATaGAACACCAATTTCCTTCTGCAAAGCCCTCCATGT +
Preference number: 6 (lower is better)
Translates to: GGPSDKNKPTGA*NTNFLLQSPPC
Trigger: ACATGGAGGGCTTTGCAGAAGGAAATTGGTGTTGCATGCTCCAGTGGGTTTATTTTTGTCGCTTGGGCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS GCA 72 bp ATAAACCCACTGGAGCATGCAACACCAATTTCCTTCTaGAAAGCCCTCCATGTCTCCCCGAGAATCTCTGAT +
Preference number: 6 (lower is better)
Translates to: INPLEHATPISF*KALHVSPRISD
Trigger: ATCAGAGATTCTCGGGGAGACATGGAGGGCTTTGCAGAAGGAAATTGGTGTTGCATGCTCCAGTGGGTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183914.8
CDS TCA 72 bp CTGTGTCTGAAGGACGTAAAAAGTCTGTTTCACAGGTaGAAAAGGTCTGGTGATCCTTCTGTATTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: LCLKDVKSLFHR*KRSGDPSVFCS
Trigger: GGAGCAGAATACAGAAGGATCACCAGACCTTTTTCACCTGTGAAACAGACTTTTTACGTCCTTCAGACACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123876.6